Query 012186
Match_columns 469
No_of_seqs 286 out of 3192
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1E-42 3.5E-47 347.2 14.7 397 57-459 33-537 (606)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-43 4.4E-48 361.2 6.3 401 55-458 198-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.1E-41 3.6E-46 339.8 14.7 279 177-458 275-560 (606)
4 3rgz_A Protein brassinosteroid 100.0 4.4E-43 1.5E-47 357.3 4.5 396 57-456 269-738 (768)
5 4eco_A Uncharacterized protein 100.0 1.9E-42 6.5E-47 344.7 -0.9 406 45-462 66-604 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-41 1.2E-45 336.2 6.7 397 56-458 31-558 (606)
7 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-38 6.4E-43 312.7 21.3 391 56-459 25-511 (549)
8 2z63_A TOLL-like receptor 4, v 100.0 1.5E-40 5.3E-45 329.3 4.1 398 56-459 27-532 (570)
9 4ecn_A Leucine-rich repeat pro 100.0 1.2E-40 3.9E-45 336.9 2.8 403 49-462 315-844 (876)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-39 1.2E-43 325.8 13.2 399 56-458 48-549 (680)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-40 1.2E-44 339.3 4.4 397 55-458 22-517 (844)
12 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-38 1.1E-42 318.8 16.2 349 108-458 250-622 (680)
13 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-39 2.2E-43 319.7 6.4 392 59-459 13-535 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 5E-38 1.7E-42 307.4 11.5 387 57-459 21-482 (520)
15 3v47_A TOLL-like receptor 5B a 100.0 6.8E-37 2.3E-41 294.4 13.5 357 57-431 30-406 (455)
16 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-38 8.7E-43 325.5 1.9 394 55-459 46-540 (844)
17 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-33 7.1E-38 270.7 34.8 372 56-430 2-437 (461)
18 1z7x_W Ribonuclease inhibitor; 100.0 6.6E-34 2.3E-38 274.1 29.3 379 81-462 3-444 (461)
19 4eco_A Uncharacterized protein 100.0 1.7E-37 5.9E-42 309.0 4.2 368 81-459 81-580 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-36 8.6E-41 295.3 11.8 384 60-461 3-460 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 9.4E-36 3.2E-40 293.4 14.9 395 57-460 5-488 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 1.1E-35 3.7E-40 286.0 14.2 341 54-411 51-410 (455)
23 2z63_A TOLL-like receptor 4, v 100.0 3E-37 1E-41 305.7 2.4 393 59-461 9-510 (570)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-35 4.4E-40 292.6 9.6 390 56-458 51-510 (562)
25 1o6v_A Internalin A; bacterial 100.0 3.2E-33 1.1E-37 268.9 25.5 340 57-430 46-385 (466)
26 4ecn_A Leucine-rich repeat pro 100.0 3.3E-36 1.1E-40 304.5 4.8 370 73-456 440-862 (876)
27 2p1m_B Transport inhibitor res 100.0 6.1E-32 2.1E-36 269.0 33.5 459 1-467 8-528 (594)
28 1o6v_A Internalin A; bacterial 100.0 2.1E-32 7.3E-37 263.1 28.7 345 80-459 45-389 (466)
29 4fmz_A Internalin; leucine ric 100.0 6.6E-32 2.3E-36 250.0 25.5 307 103-459 41-347 (347)
30 3ogk_B Coronatine-insensitive 100.0 1.2E-31 4E-36 266.7 27.8 413 51-468 67-536 (592)
31 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-34 7.7E-39 289.1 7.5 399 55-458 50-580 (635)
32 3ogk_B Coronatine-insensitive 100.0 1.6E-31 5.6E-36 265.7 27.1 408 43-455 98-548 (592)
33 2id5_A Lingo-1, leucine rich r 100.0 1.4E-33 4.8E-38 272.7 11.8 300 131-431 32-331 (477)
34 4fmz_A Internalin; leucine ric 100.0 2.2E-30 7.5E-35 239.8 28.7 303 57-409 44-346 (347)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-33 1.9E-37 273.8 11.8 371 54-434 73-511 (562)
36 2p1m_B Transport inhibitor res 100.0 2.4E-30 8.3E-35 257.4 27.9 419 32-457 67-543 (594)
37 2id5_A Lingo-1, leucine rich r 100.0 2.3E-32 8E-37 264.2 12.3 302 106-409 32-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5.1E-36 251.5 15.1 313 104-437 43-355 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 3.2E-30 1.1E-34 242.5 17.1 317 79-416 43-359 (390)
40 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5.2E-35 257.7 13.9 313 104-437 49-361 (597)
41 3bz5_A Internalin-J, INLJ; leu 100.0 9.1E-30 3.1E-34 242.7 17.6 337 56-458 41-387 (457)
42 3oja_B Anopheles plasmodium-re 100.0 1.6E-29 5.4E-34 250.4 15.8 317 79-416 49-365 (597)
43 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-30 9.1E-35 259.4 8.6 393 60-461 34-558 (635)
44 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-29 1.2E-33 238.5 15.5 329 72-459 33-369 (457)
45 1xku_A Decorin; proteoglycan, 99.9 2.6E-28 8.9E-33 224.0 10.8 269 180-456 52-330 (330)
46 1jl5_A Outer protein YOPM; leu 99.9 3.2E-29 1.1E-33 238.7 4.7 303 106-459 91-410 (454)
47 1xku_A Decorin; proteoglycan, 99.9 2E-27 6.8E-32 218.1 13.0 290 107-430 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-28 8.2E-33 224.3 5.9 288 132-456 34-331 (332)
49 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-27 5.3E-32 218.9 8.4 287 107-430 34-330 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 3.3E-29 1.1E-33 227.4 -2.9 248 180-430 50-301 (313)
51 1ogq_A PGIP-2, polygalacturona 99.9 7.6E-29 2.6E-33 225.1 -1.3 248 205-456 51-302 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 6.5E-27 2.2E-31 216.7 10.7 251 180-430 52-311 (353)
53 1jl5_A Outer protein YOPM; leu 99.9 4.8E-25 1.6E-29 210.0 18.2 341 57-459 71-430 (454)
54 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.9E-30 208.3 10.3 278 130-411 30-316 (353)
55 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.9E-28 196.2 21.9 256 198-454 26-339 (386)
56 3o53_A Protein LRIM1, AGAP0063 99.9 3E-26 1E-30 208.6 3.1 251 188-453 18-270 (317)
57 3zyi_A Leucine-rich repeat-con 99.9 1E-25 3.5E-30 215.7 5.7 245 182-431 56-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.6E-30 214.9 5.7 245 182-431 45-290 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.4E-30 202.2 5.1 206 180-409 32-238 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 7.4E-25 2.5E-29 209.0 9.1 246 157-408 45-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 6.9E-25 2.4E-29 210.0 8.8 227 180-408 75-302 (452)
62 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-25 2.2E-29 196.9 7.7 223 207-432 14-237 (285)
63 2z66_A Variable lymphocyte rec 99.9 2E-25 6.7E-30 202.6 4.3 228 180-408 28-260 (306)
64 2ca6_A RAN GTPase-activating p 99.9 1.8E-22 6.1E-27 189.3 23.9 237 176-412 28-319 (386)
65 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.6E-28 193.3 15.3 237 1-262 11-257 (336)
66 2ast_B S-phase kinase-associat 99.9 1.5E-22 5.2E-27 186.2 20.5 227 228-459 70-307 (336)
67 2z66_A Variable lymphocyte rec 99.9 1.9E-24 6.7E-29 196.0 7.4 249 60-313 10-261 (306)
68 4fcg_A Uncharacterized protein 99.9 3.6E-25 1.2E-29 202.0 0.9 235 203-458 80-314 (328)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-25 1.4E-29 201.0 0.9 239 178-430 32-272 (317)
70 1wwl_A Monocyte differentiatio 99.9 7.3E-26 2.5E-30 205.6 -4.4 248 202-460 41-311 (312)
71 4fcg_A Uncharacterized protein 99.9 8E-24 2.8E-28 193.1 8.6 223 55-285 79-310 (328)
72 3goz_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 191.9 12.0 251 185-436 3-299 (362)
73 3oja_A Leucine-rich immune mol 99.9 4.8E-24 1.6E-28 205.1 5.6 235 205-453 35-270 (487)
74 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.2E-27 187.2 11.3 251 161-412 4-300 (362)
75 3g06_A SSPH2 (leucine-rich rep 99.9 8.4E-22 2.9E-26 193.2 15.6 270 131-446 40-309 (622)
76 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-21 7.1E-26 190.4 18.3 268 106-419 40-307 (622)
77 1wwl_A Monocyte differentiatio 99.9 1E-23 3.4E-28 191.5 0.4 253 102-385 39-309 (312)
78 3oja_A Leucine-rich immune mol 99.9 3.3E-23 1.1E-27 199.3 3.7 236 153-403 32-269 (487)
79 2z62_A TOLL-like receptor 4, v 99.9 1E-22 3.5E-27 181.7 2.5 203 228-431 28-235 (276)
80 2o6q_A Variable lymphocyte rec 99.8 2E-22 6.9E-27 178.9 3.8 201 228-431 16-216 (270)
81 2z62_A TOLL-like receptor 4, v 99.8 1.5E-21 5.3E-26 174.0 5.1 206 180-409 28-237 (276)
82 4glp_A Monocyte differentiatio 99.8 1.5E-21 5.2E-26 177.0 5.0 227 229-461 65-310 (310)
83 3rfs_A Internalin B, repeat mo 99.8 1.8E-21 6.2E-26 172.9 4.7 209 224-444 37-245 (272)
84 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.1E-25 169.0 11.2 194 225-435 38-231 (308)
85 2o6q_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 167.5 9.0 134 250-383 83-216 (270)
86 3rfs_A Internalin B, repeat mo 99.8 6.1E-21 2.1E-25 169.5 6.0 182 201-391 60-241 (272)
87 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.3E-24 162.8 13.5 196 200-411 37-232 (308)
88 1p9a_G Platelet glycoprotein I 99.8 2.4E-20 8.3E-25 166.8 4.9 204 199-409 5-208 (290)
89 4glp_A Monocyte differentiatio 99.8 4.9E-20 1.7E-24 167.1 5.9 33 396-430 272-304 (310)
90 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.7E-24 160.9 8.7 203 151-385 6-208 (290)
91 2xwt_C Thyrotropin receptor; s 99.8 8.7E-21 3E-25 165.3 -0.5 179 229-410 32-219 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 2E-20 6.8E-25 163.0 0.5 179 205-386 32-219 (239)
93 3m19_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 161.3 2.8 177 252-431 14-190 (251)
94 3m19_A Variable lymphocyte rec 99.7 3.2E-19 1.1E-23 156.4 4.1 181 228-411 14-194 (251)
95 1h6t_A Internalin B; cell adhe 99.7 2E-18 7E-23 154.5 6.3 168 249-430 43-210 (291)
96 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.2E-22 139.4 7.4 151 300-459 44-195 (197)
97 1h6t_A Internalin B; cell adhe 99.7 7.6E-17 2.6E-21 144.2 10.5 173 225-411 43-215 (291)
98 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.7E-22 161.7 6.2 173 248-435 39-211 (605)
99 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.9E-21 133.4 9.2 147 276-430 44-191 (197)
100 2o6s_A Variable lymphocyte rec 99.7 8.6E-18 2.9E-22 142.9 1.0 158 277-442 29-186 (208)
101 2xot_A Amphoterin-induced prot 99.7 5.6E-17 1.9E-21 150.1 5.3 174 255-431 21-200 (361)
102 1m9s_A Internalin B; cell inva 99.6 7.4E-17 2.5E-21 158.1 6.4 189 207-411 24-212 (605)
103 3sb4_A Hypothetical leucine ri 99.6 3.3E-17 1.1E-21 149.7 1.8 283 131-425 25-326 (329)
104 2o6s_A Variable lymphocyte rec 99.6 6.9E-17 2.4E-21 137.3 3.7 131 229-359 29-159 (208)
105 3sb4_A Hypothetical leucine ri 99.6 1.4E-16 4.8E-21 145.5 5.5 124 276-402 202-327 (329)
106 2v9t_B SLIT homolog 2 protein 99.6 4.1E-17 1.4E-21 139.6 1.5 150 279-431 14-163 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 8.1E-17 2.8E-21 137.7 2.8 150 279-431 14-164 (220)
108 3un9_A NLR family member X1; l 99.6 5.9E-15 2E-19 136.1 15.1 190 275-465 71-290 (372)
109 4ay9_X Follicle-stimulating ho 99.6 8.2E-18 2.8E-22 155.0 -4.8 240 183-430 12-256 (350)
110 3un9_A NLR family member X1; l 99.6 1.1E-14 3.6E-19 134.4 15.5 184 251-435 71-284 (372)
111 3e6j_A Variable lymphocyte rec 99.6 2E-16 7E-21 136.2 3.2 150 278-431 21-170 (229)
112 2xot_A Amphoterin-induced prot 99.6 3.9E-16 1.3E-20 144.4 5.1 176 231-409 21-202 (361)
113 3cvr_A Invasion plasmid antige 99.6 5.2E-16 1.8E-20 150.4 5.9 186 205-418 60-252 (571)
114 2v9t_B SLIT homolog 2 protein 99.6 3.1E-16 1E-20 134.1 3.4 152 255-409 14-165 (220)
115 1xeu_A Internalin C; cellular 99.6 2.3E-16 7.9E-21 138.8 1.9 168 252-435 19-186 (263)
116 4ay9_X Follicle-stimulating ho 99.6 4.7E-16 1.6E-20 143.3 3.8 239 60-309 12-255 (350)
117 2v70_A SLIT-2, SLIT homolog 2 99.6 7.6E-16 2.6E-20 131.7 4.5 153 254-409 13-166 (220)
118 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 121.2 6.2 128 324-454 17-149 (149)
119 3cvr_A Invasion plasmid antige 99.6 5.9E-15 2E-19 143.0 9.4 134 156-313 60-193 (571)
120 1xeu_A Internalin C; cellular 99.5 1.3E-15 4.5E-20 134.0 3.4 169 228-411 19-187 (263)
121 2ell_A Acidic leucine-rich nuc 99.5 1.1E-15 3.9E-20 124.9 2.2 133 324-459 24-161 (168)
122 3e6j_A Variable lymphocyte rec 99.5 2.2E-15 7.4E-20 129.8 4.1 153 253-409 20-172 (229)
123 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 116.3 7.1 128 300-429 17-149 (149)
124 1dce_A Protein (RAB geranylger 99.5 9.6E-17 3.3E-21 156.3 -7.1 122 325-452 442-567 (567)
125 4fdw_A Leucine rich hypothetic 99.5 1.5E-14 5.3E-19 134.7 6.3 262 155-430 113-380 (401)
126 4fs7_A Uncharacterized protein 99.5 1.1E-14 3.9E-19 136.3 5.3 315 72-430 62-376 (394)
127 1dce_A Protein (RAB geranylger 99.5 1.2E-15 4.2E-20 148.6 -2.5 209 201-427 346-567 (567)
128 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.6E-19 117.5 3.8 129 300-430 24-157 (168)
129 4fdw_A Leucine rich hypothetic 99.5 6.9E-14 2.4E-18 130.3 7.9 241 156-408 136-382 (401)
130 4fs7_A Uncharacterized protein 99.5 4.5E-14 1.6E-18 132.2 6.1 306 55-380 69-374 (394)
131 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 117.1 4.3 108 349-459 43-154 (176)
132 1w8a_A SLIT protein; signaling 99.4 1.8E-14 6.1E-19 120.3 -0.3 127 302-431 10-137 (192)
133 1ds9_A Outer arm dynein; leuci 99.4 5.7E-15 1.9E-19 124.2 -5.1 133 319-459 43-186 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.7E-18 111.7 4.8 128 299-430 18-150 (176)
135 2o6r_A Variable lymphocyte rec 99.4 9.9E-14 3.4E-18 114.3 1.8 132 301-436 8-139 (177)
136 2wfh_A SLIT homolog 2 protein 99.4 1.2E-13 4E-18 115.3 1.9 125 303-431 13-137 (193)
137 4b8c_D Glucose-repressible alc 99.4 3.9E-14 1.3E-18 142.4 -1.8 137 270-410 218-355 (727)
138 1w8a_A SLIT protein; signaling 99.3 1.9E-13 6.6E-18 114.0 1.4 129 279-410 11-140 (192)
139 2o6r_A Variable lymphocyte rec 99.3 7.5E-13 2.6E-17 109.0 5.0 132 278-412 9-140 (177)
140 2wfh_A SLIT homolog 2 protein 99.3 1.6E-12 5.5E-17 108.4 5.4 127 279-409 13-139 (193)
141 4b8c_D Glucose-repressible alc 99.3 1.6E-13 5.5E-18 138.0 -1.0 138 246-387 218-356 (727)
142 1ds9_A Outer arm dynein; leuci 99.3 5E-14 1.7E-18 118.4 -4.0 127 295-426 43-180 (198)
143 2ra8_A Uncharacterized protein 99.3 2.7E-11 9.1E-16 110.7 13.2 144 320-467 168-329 (362)
144 4gt6_A Cell surface protein; l 99.2 3.5E-11 1.2E-15 112.6 11.7 153 75-235 57-212 (394)
145 4gt6_A Cell surface protein; l 99.2 7.8E-11 2.7E-15 110.2 10.7 323 57-406 64-388 (394)
146 2ra8_A Uncharacterized protein 99.2 1.7E-10 5.9E-15 105.3 11.9 154 296-456 168-341 (362)
147 3g39_A Variable lymphocyte rec 99.1 5.1E-12 1.7E-16 103.0 -0.1 104 325-431 10-113 (170)
148 2r9u_A Variable lymphocyte rec 99.1 1.2E-11 4E-16 101.2 0.1 102 327-431 15-116 (174)
149 1io0_A Tropomodulin; LRR prote 99.1 2E-09 6.9E-14 88.7 13.0 118 343-461 31-167 (185)
150 3e4g_A ATP synthase subunit S, 99.1 3.6E-10 1.2E-14 90.4 7.9 90 57-146 61-154 (176)
151 3g39_A Variable lymphocyte rec 99.0 6.6E-11 2.3E-15 96.3 1.9 106 301-409 10-115 (170)
152 3e4g_A ATP synthase subunit S, 99.0 8.7E-10 3E-14 88.2 8.0 100 349-448 62-170 (176)
153 4h09_A Hypothetical leucine ri 99.0 7.3E-10 2.5E-14 103.1 6.8 106 296-404 236-341 (379)
154 2r9u_A Variable lymphocyte rec 98.9 2.9E-10 9.8E-15 92.8 3.4 86 324-409 33-118 (174)
155 4h09_A Hypothetical leucine ri 98.9 2.5E-09 8.6E-14 99.5 9.0 146 247-397 212-357 (379)
156 1io0_A Tropomodulin; LRR prote 98.9 1.5E-08 5.3E-13 83.4 12.1 114 321-435 33-165 (185)
157 2ifg_A High affinity nerve gro 98.8 7.2E-10 2.5E-14 101.8 1.6 101 328-431 12-114 (347)
158 2ifg_A High affinity nerve gro 98.8 2.5E-09 8.5E-14 98.2 3.6 104 303-409 11-116 (347)
159 3rw6_A Nuclear RNA export fact 98.2 8.8E-07 3E-11 76.5 3.9 80 369-451 167-257 (267)
160 1pgv_A TMD-1, tropomodulin TMD 98.1 7.7E-05 2.6E-09 60.8 13.2 88 371-458 69-170 (197)
161 3rw6_A Nuclear RNA export fact 98.0 3.4E-05 1.2E-09 66.6 9.6 85 52-138 165-258 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 0.00021 7.1E-09 58.2 12.2 37 394-430 124-167 (197)
163 3rfe_A Platelet glycoprotein I 95.2 0.0044 1.5E-07 47.0 0.7 57 375-433 11-68 (130)
164 3rfe_A Platelet glycoprotein I 94.6 0.012 4.1E-07 44.5 1.6 55 351-409 11-68 (130)
165 2lz0_A Uncharacterized protein 71.1 1.8 6.3E-05 30.5 1.8 45 69-115 8-52 (100)
166 2lz0_A Uncharacterized protein 55.7 1.2 4.2E-05 31.4 -1.6 47 383-430 7-53 (100)
167 2a5y_B CED-4; apoptosis; HET: 31.8 4.9 0.00017 38.7 -2.1 40 2-42 426-465 (549)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-42 Score=347.17 Aligned_cols=397 Identities=22% Similarity=0.253 Sum_probs=192.8
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+++++|+++++.+++..+..|.++++|++|++++| .+....+..|.++++|++|++++|.+ ....|..++.+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEe
Confidence 45666666666666555555666666666666653 45555555566666666666666542 23334455566666666
Q ss_pred ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCC--eeeccCC
Q 012186 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 214 (469)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~ 214 (469)
++++|......+..+..+++|++|++++|. +.......+..+++|++|++++|.++...+..+..+++|+ .|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 666554333233445555566666665533 2222222222355555555555554443333344444444 3333333
Q ss_pred CCc---------------------------------------------------------------------------hh
Q 012186 215 PVT---------------------------------------------------------------------------AA 219 (469)
Q Consensus 215 ~~~---------------------------------------------------------------------------~~ 219 (469)
.+. ..
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 222 22
Q ss_pred hHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC-------------
Q 012186 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC------------- 286 (469)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------- 286 (469)
.+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 12223344455555555554442 2233444455555555555444433333444444444444444
Q ss_pred ------------CCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH-HhhhCCCCCc
Q 012186 287 ------------GIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 351 (469)
Q Consensus 287 ------------~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 351 (469)
.+.... +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 333221 2223344444444444444433333334444444444444444433222 1234445555
Q ss_pred EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH---HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeecc
Q 012186 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (469)
Q Consensus 352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 428 (469)
.|++++|.++...+..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 5555555554444444445555555555555554311 1334555555555555555555555555555556666666
Q ss_pred CCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 429 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
+| .++...++.+.++++| .|++++|+++.
T Consensus 509 ~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 509 HN-RLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp SS-CCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CC-ccCcCChhHhCccccc-EEECcCCcccc
Confidence 55 5555555555555555 55666555543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-43 Score=361.18 Aligned_cols=401 Identities=23% Similarity=0.220 Sum_probs=242.0
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcH-------------
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA------------- 121 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------- 121 (469)
..+++++|++++|.+++..|. +..+++|++|++++| .++...+..+.++++|++|++++|.+...
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 456777777777777665554 667777777777764 45555666667777777777766653211
Q ss_pred --------HHHHHHhC-CCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc
Q 012186 122 --------QGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (469)
Q Consensus 122 --------~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 192 (469)
..|..+.. +++|++|++++|......+..+..+++|++|++++|..........+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 11222222 244444444444332233344444555555555543221111122244455555555555444
Q ss_pred ChhhhhhccC---------------------------CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH
Q 012186 193 TDSGIAYLKG---------------------------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245 (469)
Q Consensus 193 ~~~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (469)
.+..+..+.. +++|++|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 3222222221 3344445555444444444555556666666666665555555
Q ss_pred HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCC
Q 012186 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325 (469)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (469)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 55666666666666666666555555666666666666666665555555666677777777777666556666667777
Q ss_pred CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHH--------------------------------------
Q 012186 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA-------------------------------------- 367 (469)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------------------- 367 (469)
|++|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 777777777666666666667777777777766554222211
Q ss_pred --------------------------------HhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186 368 --------------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415 (469)
Q Consensus 368 --------------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (469)
+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++..|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 122456777777777777777777778888888888888888777777
Q ss_pred HhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 416 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
++.+++|+.|++++| .+++.+|..+..+++|+.|++++|+++
T Consensus 676 l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 676 VGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCccc
Confidence 888888888888888 777777777788888888888888765
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-41 Score=339.85 Aligned_cols=279 Identities=20% Similarity=0.256 Sum_probs=222.0
Q ss_pred cCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhH-HHHhhcCCCcc
Q 012186 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSKIGSLK 255 (469)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 255 (469)
..+++|++|+++++.++. .+..+..+++|++|++++|.+....+..+..+++|++|++.+|.+.... ...+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 344555555555555542 2334555566666666666665555555666666666666666554322 23466778888
Q ss_pred EEEccCCCCchHH--HHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecc
Q 012186 256 VLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332 (469)
Q Consensus 256 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 332 (469)
.|++++|.+.+.. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 8888888776543 5567889999999999998877767778899999999999998765443 347889999999999
Q ss_pred cCCCCchHHHhhhCCCCCcEEEccCCCCCHHH---HHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+|.+....+..+..+++|+.|++++|.+++.. ...+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 99998877888889999999999999987632 245788999999999999999988899999999999999999999
Q ss_pred HHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 410 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
+..|..+..++.| +|++++| .++...+..+..+++|+.|++++|++.
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence 9999999999999 9999999 888888888999999999999999875
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-43 Score=357.28 Aligned_cols=396 Identities=21% Similarity=0.171 Sum_probs=310.2
Q ss_pred CCccEEEecCCCCChHhhHhhhc-CCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
+++++|++++|.+++.+|..+.. +++|++|++++| .++...+..+.++++|++|++++|..........+..+++|++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 34444455544444445544443 366777777663 4555556667777777777777776432322344777777777
Q ss_pred EecccccccccccccccCCC-CccEEEccCCCCCChhhhhcccC--CCCCCEEEecccccChhhhhhccCCCCCCeeecc
Q 012186 136 LDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (469)
|++++|......+..+..++ +|++|++++|. +.+..+..+.. +++|++|++.+|.+++..+..+..+++|++|+++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 77777654445555566665 77777777743 33333444444 7789999999998887777888999999999999
Q ss_pred CCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHH
Q 012186 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292 (469)
Q Consensus 213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 292 (469)
+|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99888777888999999999999999998888888999999999999999998877888999999999999999988777
Q ss_pred HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh-----------------------------
Q 012186 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK----------------------------- 343 (469)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------- 343 (469)
+..++.+++|++|++++|.+....+..++.+++|+.|++++|.+....|..
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 778889999999999999998778888999999999999998655332222
Q ss_pred -----------------------------------------hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC
Q 012186 344 -----------------------------------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (469)
Q Consensus 344 -----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 382 (469)
+..+++|+.|++++|.+++..+..++.+++|+.|++++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 223578999999999999888889999999999999999
Q ss_pred CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
.+++.+|..+..+++|+.|++++|++++..|..+..+++|++|++++| .+++.+|+. +.+..+....+.+|+
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCCc-hhhccCCHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999 777766642 334555555566653
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-42 Score=344.69 Aligned_cols=406 Identities=17% Similarity=0.170 Sum_probs=332.1
Q ss_pred CHHH---HHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCc-----------------------------
Q 012186 45 NDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI----------------------------- 92 (469)
Q Consensus 45 ~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------- 92 (469)
.+.| .++.|....+++.|+|+++.+++.+|..++++++|++|++++|.
T Consensus 66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l 145 (636)
T 4eco_A 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145 (636)
T ss_dssp GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence 4566 55555444699999999999999999999999999999999862
Q ss_pred ------------------------------------------------ccChhHhHhhhCCCCCCEEeCCCCCcCcHH--
Q 012186 93 ------------------------------------------------QISDGGLEHLRGLSNLTSLSFRRNNAITAQ-- 122 (469)
Q Consensus 93 ------------------------------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 122 (469)
.++. .|..++++++|++|++++|.+ ...
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l-~~~~~ 223 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF-VAENI 223 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC-CGGGB
T ss_pred HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc-ccccc
Confidence 2223 466788999999999999984 442
Q ss_pred ---------------HHHHHh--CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCCh-hhhhcccCC-----
Q 012186 123 ---------------GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL----- 179 (469)
Q Consensus 123 ---------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~----- 179 (469)
.|..++ ++++|++|++++|......|..+.++++|++|++++|..+.. ..+..++.+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 788888 999999999999877777788899999999999999664665 566666665
Q ss_pred -CCCCEEEecccccChhhhh--hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCC-cc
Q 012186 180 -TNLKSLQISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LK 255 (469)
Q Consensus 180 -~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~ 255 (469)
++|++|++++|.++ ..+. .+..+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |+
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 99999999999998 4444 78999999999999999885455 8888999999999999887 45566888888 99
Q ss_pred EEEccCCCCchHHHHHhhCC--CCCCEEecCCCCCChHHHHHhh-------CCCCCCEEeccCCCCChhhHHHhhCCCCC
Q 012186 256 VLNLGFNEITDECLVHLKGL--TNLESLNLDSCGIGDEGLVNLT-------GLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (469)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 326 (469)
.|++++|.++ ..+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.+.......+..+++|
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 9999999988 455555544 4899999999988776666666 67799999999999887666667789999
Q ss_pred cEEecccCCCCchHHHhhhCC-------CCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCCCCCChhHHHHhHcCCC
Q 012186 327 ESINLSFTGISDGSLRKLAGL-------SSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKN 397 (469)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 397 (469)
+.|++++|.+.......+... ++|+.|++++|.++.. +..+. .+++|++|++++|++++ +|..+..+++
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 999999998885443333322 3999999999999954 45554 89999999999999998 6788889999
Q ss_pred CCeeee------CCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHH
Q 012186 398 LRSLEI------CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462 (469)
Q Consensus 398 L~~L~l------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 462 (469)
|+.|++ ++|.+.+..|..+..+++|++|++++| .++.. |..+. ++|+.|++++|++...++
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~i-p~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKV-NEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC-CSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCcc-CHhHh--CcCCEEECcCCCCccccH
Confidence 999999 457778888889999999999999999 66554 43333 899999999998876543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-41 Score=336.16 Aligned_cols=397 Identities=23% Similarity=0.232 Sum_probs=251.3
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
++++++|+++++.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+ ....|..++.+++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcc-cccChhhcCCcccCCE
Confidence 468889999988888777778888899999999884 67777777888888999999988874 4455777888889999
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCC-----------
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ----------- 204 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~----------- 204 (469)
|++++|......+..+.++++|++|++++|.......+..++++++|++|++++|.++...+..+..++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 999887544444466888888999998885533323467788888888888888877665443332222
Q ss_pred ----------------CCCeeeccCCCCch-hhHHh--------------------------------------------
Q 012186 205 ----------------KLTLLNLEGCPVTA-ACLDS-------------------------------------------- 223 (469)
Q Consensus 205 ----------------~L~~L~l~~~~~~~-~~~~~-------------------------------------------- 223 (469)
+|+.|++++|.+.. ..+..
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 34445554443321 11111
Q ss_pred ----------------------------------hhcCCCCcEEECCCCCCChhHHH--------------------Hhh
Q 012186 224 ----------------------------------LSALGSLFYLNLNRCQLSDDGCE--------------------KFS 249 (469)
Q Consensus 224 ----------------------------------~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~ 249 (469)
+..+++|+.|++.+|.+.. .+. .+.
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccceeeccCCcCccchhhc
Confidence 1122334444444443311 110 112
Q ss_pred cCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCC
Q 012186 250 KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNL 326 (469)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 326 (469)
.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 334444444444444332 1334455555555555555443322 344555666666666665544433 345566777
Q ss_pred cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH-HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (469)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (469)
+.|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 7777777766665556666677777777777766652 344556677777777777777776666677777777777777
Q ss_pred CCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCc-ccccccccCCCCC
Q 012186 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSRIT 458 (469)
Q Consensus 406 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~ 458 (469)
|++++..|..+..+++|++|++++| .++..+.. +..++ +|+.|++++|++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCC-cCcccCHh-HhhhcccCcEEEccCCCcc
Confidence 7777766667777777777777777 56643333 66665 4777777777654
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-38 Score=312.72 Aligned_cols=391 Identities=21% Similarity=0.191 Sum_probs=283.8
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
++++++|+++++.+++..+..+.++++|++|++++| .++...+..|.++++|++|++++|.+ ....+..++.+++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcE
Confidence 368999999999998877888899999999999984 67777778899999999999999874 5556677899999999
Q ss_pred Eecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 136 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
|++++|.... ..+..+.++++|++|+++++..........+..+++|++|++++|.++...+..+..+++|++|+++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999985433 234678889999999999876566555567888999999999998888777777777777888887777
Q ss_pred CCchhhHHhhhcCCCCcEEECCCCCCChh---------------------------HHHH----hhc-------------
Q 012186 215 PVTAACLDSLSALGSLFYLNLNRCQLSDD---------------------------GCEK----FSK------------- 250 (469)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------------~~~~----~~~------------- 250 (469)
.+.......+..+++|++|++++|.+... .+.. +..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 66554343445567777777777665431 0000 011
Q ss_pred ----------------------------------------------CCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186 251 ----------------------------------------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (469)
Q Consensus 251 ----------------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 284 (469)
.++|+.|++++|.+.......+..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 1234444444444432222223457777777777
Q ss_pred CCCCChHHHHH---hhCCCCCCEEeccCCCCChhhH--HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186 285 SCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (469)
Q Consensus 285 ~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (469)
+|.+.+..+.. ++.+++|+.|++++|.+..... ..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence 77776654332 4567777788887777765432 446677778888887777663 33445566777888887777
Q ss_pred CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHH
Q 012186 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439 (469)
Q Consensus 360 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 439 (469)
++.... . -.++|++|++++|++++.. ..+++|+.|++++|+++.. |. ...+++|++|++++| .++...++
T Consensus 422 l~~l~~-~--~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 422 IRVVKT-C--IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CSCCCT-T--SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cccccc-h--hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCC-ccCCcCHH
Confidence 764321 1 1257888888888777642 4689999999999999854 43 457899999999999 88888888
Q ss_pred HHHhCcccccccccCCCCCH
Q 012186 440 LISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 440 ~l~~l~~L~~L~l~~~~~~~ 459 (469)
.+..+++|+.|++++|++.-
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCC
T ss_pred HHhcCcccCEEEecCCCccC
Confidence 88999999999999999764
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=329.31 Aligned_cols=398 Identities=21% Similarity=0.208 Sum_probs=289.5
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
++++++|+++++.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+ ....+..|..+++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcC-CccCHhhhcCcccccc
Confidence 457899999998888877778889999999999885 57776677888899999999998873 4445577888999999
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC----Ceeec
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL 211 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l 211 (469)
|++++|.........+..+++|++|+++++.......+..++++++|++|++++|.++......+..+++| +.+++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 99988753333334588889999999988543322346678888899999998888876655556555555 66676
Q ss_pred cCCCCchhhHH---------------------------------------------------------------------
Q 012186 212 EGCPVTAACLD--------------------------------------------------------------------- 222 (469)
Q Consensus 212 ~~~~~~~~~~~--------------------------------------------------------------------- 222 (469)
++|.+....+.
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 66655433222
Q ss_pred ------------hhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHH-------------------H
Q 012186 223 ------------SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------------H 271 (469)
Q Consensus 223 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~ 271 (469)
.+..+++|+.|++.++.+.. .+..+..+ +|+.|++++|.+...... .
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 23334556666665554432 22222333 444444444433311000 0
Q ss_pred hhCCCCCCEEecCCCCCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH-HhhhCCC
Q 012186 272 LKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLS 348 (469)
Q Consensus 272 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 348 (469)
...+++|+.|++++|.+.... +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ ..+..++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 035677777777777765432 34566788888888888876654433 6788888888888887665443 4567889
Q ss_pred CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeec
Q 012186 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (469)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 427 (469)
+|+.|++++|.+....+..+..+++|++|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999888776777888999999999999887 456777888999999999999999888888889999999999
Q ss_pred cCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 428 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
++| .++...+..+..+++|+.|++++|+++.
T Consensus 502 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999 7888877788899999999999988763
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-40 Score=336.94 Aligned_cols=403 Identities=17% Similarity=0.149 Sum_probs=320.8
Q ss_pred HHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChh-------------------------------
Q 012186 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG------------------------------- 97 (469)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------------- 97 (469)
..+.|....+++.|+|+++.+.+.+|..++++++|++|+++.++.+...
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~ 394 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence 3444443478999999999999999999999999999999332322111
Q ss_pred ---------------------------------------------HhHhhhCCCCCCEEeCCCCCcCcH-----------
Q 012186 98 ---------------------------------------------GLEHLRGLSNLTSLSFRRNNAITA----------- 121 (469)
Q Consensus 98 ---------------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~----------- 121 (469)
.|..++++++|++|++++|.+...
T Consensus 395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence 456788999999999999985331
Q ss_pred -----HHHHHHh--CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCCh-hhhhccc-------CCCCCCEEE
Q 012186 122 -----QGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLS-------GLTNLKSLQ 186 (469)
Q Consensus 122 -----~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~-------~~~~L~~L~ 186 (469)
.+|..++ ++++|++|++++|......|..+.++++|++|++++|..+.. ..+..+. .+++|+.|+
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 3677766 999999999999877777788899999999999999664665 4554444 456999999
Q ss_pred ecccccChhhhh--hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCC-ccEEEccCCC
Q 012186 187 ISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNE 263 (469)
Q Consensus 187 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 263 (469)
+++|.+. ..+. .+..+++|+.|++++|.+.. .| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.
T Consensus 555 Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred eeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 9999998 4444 78999999999999999884 35 8889999999999999988 56667888888 9999999999
Q ss_pred CchHHHHHhhCCC--CCCEEecCCCCCChHHHH---Hhh--CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCC
Q 012186 264 ITDECLVHLKGLT--NLESLNLDSCGIGDEGLV---NLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (469)
Q Consensus 264 ~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 336 (469)
+. ..+..+..++ +|+.|++++|.+.+..+. .+. .+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 88 4455555444 499999999988653221 112 345899999999999876666667899999999999988
Q ss_pred CchHHHhhh-------CCCCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC--
Q 012186 337 SDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-- 405 (469)
Q Consensus 337 ~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 405 (469)
.......+. ++++|+.|++++|.++.. +..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred CccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 754333332 223999999999999954 45555 89999999999999998 577888999999999976
Q ss_pred ----CCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHH
Q 012186 406 ----GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462 (469)
Q Consensus 406 ----~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 462 (469)
|.+.+..|..+..+++|+.|++++| .+.. +|..+ .++|+.|+|++|++.....
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~-Ip~~l--~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK-VDEKL--TPQLYILDIADNPNISIDV 844 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB-CCSCC--CSSSCEEECCSCTTCEEEC
T ss_pred CcccccccccChHHHhcCCCCCEEECCCC-CCCc-cCHhh--cCCCCEEECCCCCCCccCh
Confidence 7778888889999999999999999 6654 44333 3799999999999876543
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-39 Score=325.78 Aligned_cols=399 Identities=21% Similarity=0.233 Sum_probs=198.0
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
.+++++|+++++.+++..+..+.++++|++|++++| .++......|.++++|++|++++|.+ ....+..++++++|++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCE
Confidence 345555555555555544555555555555555553 34433333455555555555555542 2222334555555555
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcc--cCCCCCCEEEecccccChhhhhhccCC----------
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYLKGL---------- 203 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l---------- 203 (469)
|++++|......+..+.++++|++|+++++. +....+..+ ..+++|+.|++++|.+....+..+..+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 5555543333333444555555555555532 222222222 133555555555555444333333222
Q ss_pred -----------------CCCCeeeccCCCCchhhHHhhhcCC--CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC
Q 012186 204 -----------------QKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (469)
Q Consensus 204 -----------------~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (469)
++|+.|+++++.+....+..+..++ +|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 3344444444444444344444443 377777777777666566677777888888887777
Q ss_pred chHHHHHhhCCCCCCEEecCCCCCChH---------HHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEeccc--
Q 012186 265 TDECLVHLKGLTNLESLNLDSCGIGDE---------GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-- 333 (469)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 333 (469)
.+..+..+..+++|+.|+++++..... ....+..+++|++|++.+|.+....+..+..+++|++|++++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 655555555556666666554321110 001234455566666665555544444444444444444443
Q ss_pred --------------------------CCCCchHHHhhhCCCCCcEEEccCCCCCHHH-HHHHhcCCCCCEeecCCCCCCh
Q 012186 334 --------------------------TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 386 (469)
Q Consensus 334 --------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~ 386 (469)
|.+....+..+..+++|+.|++++|.++... ...+..+++|++|++++|++.+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 3333333344455556666666665554321 1334455555555555554443
Q ss_pred hH--------------------------HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHH--
Q 012186 387 SG--------------------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-- 438 (469)
Q Consensus 387 ~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~-- 438 (469)
.. |..+..+++|+.|++++|.+++..+..+.++++|++|++++| .++....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 523 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHA 523 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTT
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-Cccccchhh
Confidence 33 333444455555555555555444444455555555555555 3433211
Q ss_pred ------HHHHhCcccccccccCCCCC
Q 012186 439 ------ELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 439 ------~~l~~l~~L~~L~l~~~~~~ 458 (469)
..+.++++|+.|++++|+++
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCC
Confidence 11344555555555555554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=339.27 Aligned_cols=397 Identities=21% Similarity=0.200 Sum_probs=241.6
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
.++++++|++++|.+++..+..|.++++|++|++++|..+....+..|.++++|++|++++|.+ ....|..|..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccC
Confidence 4578999999999999888888999999999999997555555678899999999999999874 455678899999999
Q ss_pred EEeccccccccccccc--ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCC--CCCCeee
Q 012186 135 KLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN 210 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ 210 (469)
+|++++|......+.. +.++++|++|++++|..........++++++|++|++++|.+.......+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999998544433433 88999999999999664443333578899999999999988766544444333 4444444
Q ss_pred ccCCCCchhhHHhhhcC---------------------------------------------------------------
Q 012186 211 LEGCPVTAACLDSLSAL--------------------------------------------------------------- 227 (469)
Q Consensus 211 l~~~~~~~~~~~~~~~~--------------------------------------------------------------- 227 (469)
+++|.+....+..+..+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 44443332222111111
Q ss_pred -----CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCC
Q 012186 228 -----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (469)
Q Consensus 228 -----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (469)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 455555665555554444455556666666666666655445555666666666666666554444455566666
Q ss_pred CEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC--------------------CH
Q 012186 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI--------------------TD 362 (469)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------~~ 362 (469)
+.|++++|.+....+..+..+++|+.|++++|.+.... .+++|+.|.+++|.+ +.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 66666666655544445556666666666666554311 123333333333222 22
Q ss_pred H-HHHHHhcCCCCCEeecCCCCCChhHHH-HhHcCCCCCeeeeCCCCCCHH-----HHHHHhcCCCCCeeeccCCCCCCh
Q 012186 363 T-GLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 363 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~l~~ 435 (469)
. ....+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++.. .+..+.++++|+.|++++| .++.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 494 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS 494 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTT
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccc
Confidence 1 122234566666666666665542211 122344555555555544321 1122344555555555555 4555
Q ss_pred hHHHHHHhCcccccccccCCCCC
Q 012186 436 KTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 436 ~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
..+..+.++++|+.|++++|+++
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCS
T ss_pred cChhHccchhhhheeECCCCCCC
Confidence 55555555556666666665554
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-38 Score=318.75 Aligned_cols=349 Identities=23% Similarity=0.257 Sum_probs=252.4
Q ss_pred CCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCC--------ChhhhhcccCC
Q 012186 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI--------TDSDMKPLSGL 179 (469)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------~~~~~~~~~~~ 179 (469)
|++|++++|.+ ....+..++.+++|++|++++|......+..+..+++|++|++.++... .......+..+
T Consensus 250 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCC-CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCc-CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 66666666542 3333445566666666666665443334445666666666666543211 11111245566
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCc--hhhHHhhhc--CCCCcEEECCCCCCChhHHHHhhcCCCcc
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--AACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 255 (469)
++|++|++++|.+.......+..+++|++|++++|.+. ......+.. .++|+.|++++|.+....+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 77777777777776666666677777777777776432 111122222 25777777777777776667778888888
Q ss_pred EEEccCCCCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC--hhhHHHhhCCCCCcEEecc
Q 012186 256 VLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--SSGLRHLSGLTNLESINLS 332 (469)
Q Consensus 256 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~ 332 (469)
.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+. ...+..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 88888888765333 46778888889998888776655666778889999999888654 2345567788999999999
Q ss_pred cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHH--------HHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
+|.+....+..+..+++|+.|++++|.++..... .+..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 9988887777788899999999999988765322 25678999999999999997766678899999999999
Q ss_pred CCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH-hCcccccccccCCCCC
Q 012186 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRIT 458 (469)
Q Consensus 405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~ 458 (469)
+|+++...+..|..+++|+.|++++| .++...+..+. .+++|+.|++++|++.
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 99999887777788999999999999 88888888887 7899999999998764
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-39 Score=319.73 Aligned_cols=392 Identities=20% Similarity=0.194 Sum_probs=278.0
Q ss_pred ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (469)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (469)
-++++.++..++. +|..+. +++++|++++ +.++...+..|.++++|++|++++|.+ ....|..|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeEC
Confidence 4578888888874 454443 8999999999 468887778899999999999999974 4555778999999999999
Q ss_pred ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCc
Q 012186 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVT 217 (469)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 217 (469)
++|......+..+.++++|++|++++|. +....+..++.+++|++|++++|.+... .+..+.++++|++|++++|.+.
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9986555557889999999999999955 5555556789999999999999998763 4678899999999999999887
Q ss_pred hhhHHhhhcCCCC----cEEECCCCCCChhHHHHh---------------------------------------------
Q 012186 218 AACLDSLSALGSL----FYLNLNRCQLSDDGCEKF--------------------------------------------- 248 (469)
Q Consensus 218 ~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~--------------------------------------------- 248 (469)
...+..+..+++| ..+++++|.+.......+
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 6544444333222 244444444332211111
Q ss_pred ---------------------------------------------------------hcCCCccEEEccCCCCchHHHH-
Q 012186 249 ---------------------------------------------------------SKIGSLKVLNLGFNEITDECLV- 270 (469)
Q Consensus 249 ---------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~- 270 (469)
..+++|+.|++++|.+. ..+.
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~ 325 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL 325 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccC
Confidence 11123333333333321 1110
Q ss_pred -------------------HhhCCCCCCEEecCCCCCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEE
Q 012186 271 -------------------HLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329 (469)
Q Consensus 271 -------------------~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 329 (469)
.+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCee
Confidence 1122344444444444433221 334455566666666666544322 345566777777
Q ss_pred ecccCCCCchHH-HhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCCh-hHHHHhHcCCCCCeeeeCCCC
Q 012186 330 NLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGG 407 (469)
Q Consensus 330 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 407 (469)
++++|.+....+ ..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 777776655544 466777888888888888877666677788888888888888877 356777888999999999999
Q ss_pred CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
+++..|..+..+++|++|++++| .++...|..+..+++|+.|++++|+++.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 88887888888899999999999 7888878888889999999999998874
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=307.36 Aligned_cols=387 Identities=14% Similarity=0.143 Sum_probs=277.5
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+++++|+++++.+++..+..+.++++|++|++++| .++...+..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEE
Confidence 68899999988888877788888999999999884 677777788888999999999988753 23433 78889999
Q ss_pred ecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCC--CEEEeccccc--Chhhhhhc-----------
Q 012186 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYL----------- 200 (469)
Q Consensus 137 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l----------- 200 (469)
++++|.... ..+..+..+++|++|+++++. +.. ..+..+++| +.|++.+|.+ ....+..+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 998875443 245678888899999998854 443 345556666 8888887766 33322222
Q ss_pred ---------------cCCCCCCeeeccCCC-------CchhhHHhhhcCCCCcEEECCCCCCChhHHHHh---hcCCCcc
Q 012186 201 ---------------KGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLK 255 (469)
Q Consensus 201 ---------------~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~ 255 (469)
..+++|+.+++++|. +.... ..+..+++|+.|++.++.+.......+ ...++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 235566666666654 22222 245566666666666655544322211 1134555
Q ss_pred EEEccCCCCchHHHHHh-----hCC--------------------------CCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186 256 VLNLGFNEITDECLVHL-----KGL--------------------------TNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (469)
Q Consensus 256 ~L~l~~~~~~~~~~~~~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (469)
.|++++|.+.+..+..+ ..+ ++|+.|++++|.+.... ....+++|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 55555555443222222 223 34666666666543321 1257889999
Q ss_pred EeccCCCCChhhHHHhhCCCCCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCC
Q 012186 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 381 (469)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~ 381 (469)
|++++|.+....+..++.+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.++. .+...+..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999888777788899999999999999987 445778899999999999999987 4444567889999999999
Q ss_pred CCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
|.+++..+..+. ++|+.|++++|+++.. |..+..+++|++|++++| .++...+..+..+++|+.|++++|++.-
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999877665542 7999999999999854 666778999999999999 7887655558889999999999999864
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-37 Score=294.42 Aligned_cols=357 Identities=23% Similarity=0.199 Sum_probs=199.5
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+++++|+++++.+++..+..+.++++|++|++++|.......+..|.++++|++|++++|.+ ....|..++.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence 45666666666665555555566666666666654221122344455555666666655542 23334445555555555
Q ss_pred eccccccccccccc--ccCCCCccEEEccCCCCCChhhhhc-ccCCCCCCEEEecccccChhhhhhccCC--CCCCeeec
Q 012186 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL 211 (469)
Q Consensus 137 ~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l 211 (469)
++++|......+.. +..+++|++|++++|. +....+.. +..+++|++|++++|.+....+..+..+ .+|+.|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 55554322212222 4445555555555433 22222222 4444555555555554444333333322 34444444
Q ss_pred cCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhC---CCCCCEEecCCCCC
Q 012186 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGI 288 (469)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~~~~ 288 (469)
+++.+....+..+. ......+..+++|+.|++++|.+.+..+..+.. .++|+.|+++++..
T Consensus 188 ~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 188 SSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 44433322111000 000011123355555566555555444443322 24555555555432
Q ss_pred ChH----------HHHHhh--CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEcc
Q 012186 289 GDE----------GLVNLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (469)
Q Consensus 289 ~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (469)
... ....+. ..++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 110 000111 23578888888887777666667778888888888887777666677777888888888
Q ss_pred CCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
+|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 887777666667777888888888888877777777777888888888888777665566777788888888873
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=325.47 Aligned_cols=394 Identities=20% Similarity=0.141 Sum_probs=258.7
Q ss_pred cCCCccEEEecCCCCChHh-hHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHH--HHhCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK--AFAGLI 131 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~l~ 131 (469)
..+++++|+++++.....+ +..|.++++|++|++++| .+....+..|.++++|++|++++|... ...+. .+.+++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccC
Confidence 4567888888877544433 566778888888888774 566666777778888888888877642 22232 367778
Q ss_pred CCCEEeccccccccccc-ccccCCCCccEEEccCCCCCChhhhh--------------------------cccCCC----
Q 012186 132 NLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMK--------------------------PLSGLT---- 180 (469)
Q Consensus 132 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~~---- 180 (469)
+|++|++++|......+ ..+.++++|++|+++++. +....+. .+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 88888887765433333 457778888888887743 2221111 122222
Q ss_pred --CCCEEEecccccChhhhhhc------------------------------------cC--CCCCCeeeccCCCCchhh
Q 012186 181 --NLKSLQISCSKVTDSGIAYL------------------------------------KG--LQKLTLLNLEGCPVTAAC 220 (469)
Q Consensus 181 --~L~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~~~ 220 (469)
.|+.|++++|.+....+..+ .+ .++|+.|++++|.+....
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 27788887775443222111 11 267999999999888776
Q ss_pred HHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCC
Q 012186 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300 (469)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 300 (469)
+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..++
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 77888999999999999999887778899999999999999999876677888999999999999988776666688899
Q ss_pred CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC--------------------ch-HHHhhhCCCCCcEEEccCCC
Q 012186 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--------------------DG-SLRKLAGLSSLKSLNLDARQ 359 (469)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~-~~~~~~~~~~L~~L~l~~~~ 359 (469)
+|+.|++++|.+... ..+++|+.|.+++|.+. .. ....+..+++|+.|++++|.
T Consensus 363 ~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 363 KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 999999999977642 22445555554444332 21 12234467777777777777
Q ss_pred CCHHHHH-HHhcCCCCCEeecCCCCCCh-----hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186 360 ITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (469)
Q Consensus 360 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 433 (469)
++..... .+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 516 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RL 516 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CC
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CC
Confidence 6643211 22345666666666666542 22233455566666666666666555555556666666666666 55
Q ss_pred ChhHHHHHHhCcccccccccCCCCCH
Q 012186 434 TDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 434 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
+...+..+. ++|+.|++++|+++.
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred CccChhhhh--ccccEEECCCCcCCC
Confidence 544433322 455555555555543
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.1e-33 Score=270.67 Aligned_cols=372 Identities=24% Similarity=0.314 Sum_probs=217.7
Q ss_pred CCCccEEEecCCCCChHhhHh-hhcCCCCCEEecCCCcccChhH----hHhhhCCCCCCEEeCCCCCcCcHHHHHHH-hC
Q 012186 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 129 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 129 (469)
++++++|+++++.+++..... +..+++|++|++++| .+++.. +..+..+++|++|++++|.+ ....+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHH
Confidence 457899999999998765544 788999999999986 466543 45567889999999999874 44444333 34
Q ss_pred CC----CCCEEeccccccccc----ccccccCCCCccEEEccCCCCCChhhhhccc-----CCCCCCEEEecccccChhh
Q 012186 130 LI----NLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 196 (469)
Q Consensus 130 l~----~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~ 196 (469)
++ +|++|++++|..... .+..+..+++|++|++++|. +.+..+..+. ..++|++|++++|.++...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 688888888754432 24566777888888887754 4433333222 2456777777777666533
Q ss_pred ----hhhccCCCCCCeeeccCCCCchhhHHhhh-----cCCCCcEEECCCCCCChhH----HHHhhcCCCccEEEccCCC
Q 012186 197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE 263 (469)
Q Consensus 197 ----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~ 263 (469)
...+..+++|++|++++|.+....+..+. ..++|++|++++|.+.... +..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 33445566777777777766554333332 2456777777766665532 3444556666666666666
Q ss_pred CchHHHHH-----hhCCCCCCEEecCCCCCChHH----HHHhhCCCCCCEEeccCCCCChhhHHHhh-----CCCCCcEE
Q 012186 264 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI 329 (469)
Q Consensus 264 ~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L 329 (469)
+.+..... +..+++|++|++++|.++... +..+..+++|++|++++|.+.......+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 55432211 224566666666666665542 23344456666666666655544433332 12466666
Q ss_pred ecccCCCCchH----HHhhhCCCCCcEEEccCCCCCHHHHHHHhc-----CCCCCEeecCCCCCCh----hHHHHhHcCC
Q 012186 330 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFK 396 (469)
Q Consensus 330 ~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~ 396 (469)
++++|.++... +..+..+++|+.|++++|.++..++..+.. .++|++|++++|.+++ .++..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 66666555442 233344556666666665555544433332 4455555555555554 3444455555
Q ss_pred CCCeeeeCCCCCCHHHHHHHhc-----CCCCCeeeccCC
Q 012186 397 NLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQN 430 (469)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~ 430 (469)
+|+.|++++|.+++.....+.. ..+|+.|.+.++
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 5555555555555544333321 224555555555
No 18
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.6e-34 Score=274.14 Aligned_cols=379 Identities=23% Similarity=0.240 Sum_probs=294.7
Q ss_pred CCCCEEecCCCcccChhHhHh-hhCCCCCCEEeCCCCCcCcH---HHHHHHhCCCCCCEEecccccccccccccc-cCCC
Q 012186 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA---QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLM 155 (469)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 155 (469)
++|++|+++++ .+++..... +..+++|++|++++|.+... ..+..+..+++|++|++++|......+..+ ..++
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 57899999884 577666554 78899999999999985322 456778889999999999986444333332 3344
Q ss_pred ----CccEEEccCCCCCCh----hhhhcccCCCCCCEEEecccccChhhhhhc-----cCCCCCCeeeccCCCCchhh--
Q 012186 156 ----KLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYL-----KGLQKLTLLNLEGCPVTAAC-- 220 (469)
Q Consensus 156 ----~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~-- 220 (469)
+|++|++++|. +.+ ..+..+..+++|++|++++|.+.+.....+ ...++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 79999999965 443 346677899999999999999876554433 23568999999999887643
Q ss_pred --HHhhhcCCCCcEEECCCCCCChhHHHHhh-----cCCCccEEEccCCCCchH----HHHHhhCCCCCCEEecCCCCCC
Q 012186 221 --LDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIG 289 (469)
Q Consensus 221 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 289 (469)
+..+..+++|++|++++|.+.......+. ..++|+.|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 55667789999999999998776655553 367999999999998864 4566778899999999999887
Q ss_pred hHHHHHh-----hCCCCCCEEeccCCCCChhh----HHHhhCCCCCcEEecccCCCCchHHHhhhC-----CCCCcEEEc
Q 012186 290 DEGLVNL-----TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLNL 355 (469)
Q Consensus 290 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l 355 (469)
......+ ..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+.. .++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 6544333 25889999999999988763 445667999999999999988776665553 379999999
Q ss_pred cCCCCCHHH----HHHHhcCCCCCEeecCCCCCChhHHHHhHc-----CCCCCeeeeCCCCCCH----HHHHHHhcCCCC
Q 012186 356 DARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTD----AGVKHIKDLSSL 422 (469)
Q Consensus 356 ~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L 422 (469)
++|.++... +..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ ..+..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 999998763 455667899999999999998877766643 6799999999999997 567778889999
Q ss_pred CeeeccCCCCCChhHHHHHHh-----CcccccccccCCCCCHHHH
Q 012186 423 TLLNLSQNCNLTDKTLELISG-----LTGLVSLNVSNSRITSAGL 462 (469)
Q Consensus 423 ~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~ 462 (469)
++|++++| .++......+.. .++|+.|++.++.+++..-
T Consensus 401 ~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 401 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred cEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 99999999 788876655542 2358888887777765443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-37 Score=309.02 Aligned_cols=368 Identities=20% Similarity=0.196 Sum_probs=300.8
Q ss_pred CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCc------------------------------------------
Q 012186 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------------------------------------------ 118 (469)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------------------------------------ 118 (469)
.+++.|+++++ .+....+.+++++++|++|++++|..
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999984 67777889999999999999998842
Q ss_pred -----------------------------------CcHHHHHHHhCCCCCCEEeccccccccc-----------------
Q 012186 119 -----------------------------------ITAQGMKAFAGLINLVKLDLERCTRIHG----------------- 146 (469)
Q Consensus 119 -----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 146 (469)
++. +|..++++++|++|++++|. +..
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcc
Confidence 112 56678899999999999986 444
Q ss_pred -cccccc--CCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc-cCh-hhhhhccCC------CCCCeeeccCCC
Q 012186 147 -GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCP 215 (469)
Q Consensus 147 -~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~ 215 (469)
.|..+. ++++|++|++++|. +....+..+.++++|++|++++|. +++ ..+..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 677778 99999999999865 444566788899999999999998 886 556666554 899999999998
Q ss_pred CchhhHH--hhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCC-CCEEecCCCCCChHH
Q 012186 216 VTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEG 292 (469)
Q Consensus 216 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~ 292 (469)
+.. .|. .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .
T Consensus 317 l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l 392 (636)
T 4eco_A 317 LKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I 392 (636)
T ss_dssp CSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C
T ss_pred CCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c
Confidence 884 455 78899999999999999885555 7888899999999999887 45666888888 9999999998873 3
Q ss_pred HHHhhCC--CCCCEEeccCCCCChhhHHHhh-------CCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH
Q 012186 293 LVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (469)
Q Consensus 293 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 363 (469)
+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.+.......+..+++|+.|++++|.++..
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 4444443 4899999999998877666666 778999999999999876666677789999999999999855
Q ss_pred HHHHHhcC-------CCCCEeecCCCCCChhHHHHhH--cCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccC-----
Q 012186 364 GLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ----- 429 (469)
Q Consensus 364 ~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----- 429 (469)
....+... ++|++|++++|.++. +|..+. .+++|+.|++++|.+++ .|..+..+++|++|++++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 43333333 289999999999995 556665 89999999999999998 578888999999999954
Q ss_pred -CCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 430 -NCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 430 -~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
| .+....|..+..+++|+.|++++|+++.
T Consensus 551 ~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 580 (636)
T 4eco_A 551 GN-RTLREWPEGITLCPSLTQLQIGSNDIRK 580 (636)
T ss_dssp CC-BCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred cC-cccccChHHHhcCCCCCEEECCCCcCCc
Confidence 5 5677778889999999999999999854
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=295.31 Aligned_cols=384 Identities=18% Similarity=0.151 Sum_probs=291.4
Q ss_pred cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (469)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (469)
++|+++++.++. +|..+. ++|++|++++| .++...+..|.++++|++|++++|.+ ....|..++.+++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecC
Confidence 689999999984 665554 89999999995 67777788999999999999999974 55567889999999999999
Q ss_pred cccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC--CeeeccCCCC-
Q 012186 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV- 216 (469)
Q Consensus 140 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~- 216 (469)
+|. +...+.. .+++|++|++++|.......+..++.+++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 78 ~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred CCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccc
Confidence 984 4444444 8999999999996543323567889999999999999998863 45666777 9999999877
Q ss_pred -chhhHHhhhc--------------------------CCCCcEEECCCCC-------CChhHHHHhhcCCCccEEEccCC
Q 012186 217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN 262 (469)
Q Consensus 217 -~~~~~~~~~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~ 262 (469)
....+..+.. +++|+.+++++|. +.+.. ..+..+++|+.|+++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence 4433444433 5667777777664 33322 36778889999999888
Q ss_pred CCchHHHHHh---hCCCCCCEEecCCCCCChHHHHHh-----hCCCCCC--------------------------EEecc
Q 012186 263 EITDECLVHL---KGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLK--------------------------CLELS 308 (469)
Q Consensus 263 ~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~--------------------------~L~l~ 308 (469)
.+.+.....+ ...++|+.|++++|.+.+..+..+ ..+++|+ .|+++
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence 7775433322 124689999988876553333333 3444444 44444
Q ss_pred CCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH--HHHHHhcCCCCCEeecCCCCCCh
Q 012186 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD 386 (469)
Q Consensus 309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~ 386 (469)
+|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+++
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 44333211 115789999999999999887778888999999999999999973 34678899999999999999998
Q ss_pred hHH-HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186 387 SGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461 (469)
Q Consensus 387 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 461 (469)
.+| ..+..+++|+.|++++|.+++..|..+. ++|+.|++++| .++. .|..+..+++|+.|++++|+++...
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccC
Confidence 444 3477889999999999999887665442 79999999999 7774 4555669999999999999988643
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.4e-36 Score=293.44 Aligned_cols=395 Identities=20% Similarity=0.162 Sum_probs=257.4
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+.....+.+++.++. +|..+ .++|++|++++| .++...+..+.++++|++|++++|.+ ....+..+..+++|++|
T Consensus 5 ~~~~~c~~~~~~l~~-ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTTSCCSS-CCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEE
T ss_pred CCCceEECCCCcccc-ccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEE
Confidence 334446777777763 45433 379999999995 67877778899999999999999974 45566789999999999
Q ss_pred ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc-cChhhhhhccCCCCCCeeeccCCC
Q 012186 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP 215 (469)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 215 (469)
++++|......+..+..+++|++|++++|.......+..+..+++|++|++++|. +.......+..+++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999865444445699999999999999654332345678899999999999997 555555678999999999999999
Q ss_pred CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHH---HHHhhCCCCCCEEecCCCCCChHH
Q 012186 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEG 292 (469)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~ 292 (469)
+....+..+..+++|+.|++.++.+.......+..+++|+.|++++|.+.+.. ......+++|+.|++.++.+.+..
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 98877888999999999999999887654444567899999999988776421 001112233333333333222211
Q ss_pred HHHh---------------------------------------------------------------hCCCCCCEEeccC
Q 012186 293 LVNL---------------------------------------------------------------TGLCNLKCLELSD 309 (469)
Q Consensus 293 ~~~~---------------------------------------------------------------~~~~~L~~L~l~~ 309 (469)
+..+ ...++|+.|++.+
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 1111 1112344444444
Q ss_pred CCCChhhHHHhhCCCCCcEEecccCCCCchHHHh---hhCCCCCcEEEccCCCCCHHHH--HHHhcCCCCCEeecCCCCC
Q 012186 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARI 384 (469)
Q Consensus 310 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~ 384 (469)
|.+.......+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++.... ..+..+++|++|++++|++
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 4444333333345666666666666665544322 3455666666666666655432 3355566666666666655
Q ss_pred ChhHHHHhHcCCCCCeeeeCCCCCCHHHHH-----------------HHhcCCCCCeeeccCCCCCChhHHHHHHhCccc
Q 012186 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447 (469)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 447 (469)
+. +|..+..+++|+.|++++|.++..... .+..+++|++|++++| .++.... ...+++|
T Consensus 400 ~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~l~~L 475 (549)
T 2z81_A 400 HP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD--ASLFPVL 475 (549)
T ss_dssp CC-CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC--GGGCTTC
T ss_pred cc-CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC--cccCccC
Confidence 53 233444445555555555544322100 0135677888888888 6664332 3567888
Q ss_pred ccccccCCCCCHH
Q 012186 448 VSLNVSNSRITSA 460 (469)
Q Consensus 448 ~~L~l~~~~~~~~ 460 (469)
+.|++++|+++..
T Consensus 476 ~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 476 LVMKISRNQLKSV 488 (549)
T ss_dssp CEEECCSSCCCCC
T ss_pred CEEecCCCccCCc
Confidence 8888888887753
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-35 Score=286.03 Aligned_cols=341 Identities=16% Similarity=0.146 Sum_probs=240.9
Q ss_pred hcCCCccEEEecCCCCChHh-hHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHH--HhCC
Q 012186 54 SQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA--FAGL 130 (469)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~l 130 (469)
...+++++|+++++.+.+.+ +..|..+++|++|++++| .++...+..+.++++|++|++++|.+ ....+.. +..+
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCc
Confidence 35689999999999887544 567899999999999995 67777788999999999999999985 4434544 8899
Q ss_pred CCCCEEeccccccccccccc-ccCCCCccEEEccCCCCCChhhhhcccCC--CCCCEEEecccccChhhhhh--------
Q 012186 131 INLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAY-------- 199 (469)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~-------- 199 (469)
++|++|++++|......+.. +..+++|++|+++++. +....+..+..+ .+|+.++++++.+.......
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 99999999998654444544 8899999999999955 454455555544 78999999998877643322
Q ss_pred ccCCCCCCeeeccCCCCchhhHHhhhcC---CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHh--hC
Q 012186 200 LKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--KG 274 (469)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~ 274 (469)
+..+++|++|++++|.+....+..+... ++|+.|++.++........ .+.+.......+ ..
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGT
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCccccccccc
Confidence 2355678888888888777666655443 7777888777654321100 000000000011 12
Q ss_pred CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEE
Q 012186 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (469)
Q Consensus 275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 354 (469)
.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 35677777777766655555566677777777777777666666667777777777777777666666677777777777
Q ss_pred ccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 355 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
+++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++..
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 777777776666677777777777777777776666667777788888877776543
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=305.67 Aligned_cols=393 Identities=20% Similarity=0.239 Sum_probs=290.9
Q ss_pred ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (469)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (469)
.+.++.++.+++. +|..+ .++++.|++++| .++...+..|.++++|++|++++|.+ ....+..|.++++|++|++
T Consensus 9 ~~~~~c~~~~l~~-ip~~l--~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYK-IPDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSS-CCSSS--CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCC-CEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccc-cCCCc--cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcC-CccCcccccCchhCCEEeC
Confidence 4556777666653 44433 358999999994 67777778899999999999999974 4555678899999999999
Q ss_pred ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCc
Q 012186 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVT 217 (469)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 217 (469)
++|......+..+..+++|++|+++++. +.......++.+++|++|++++|.+... .+..+.++++|++|++++|.+.
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 9986544445789999999999999954 5544445688999999999999988863 4677899999999999999988
Q ss_pred hhhHHhhhcCCCC----cEEECCCCCCChhHHHHh---------------------------------------------
Q 012186 218 AACLDSLSALGSL----FYLNLNRCQLSDDGCEKF--------------------------------------------- 248 (469)
Q Consensus 218 ~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~--------------------------------------------- 248 (469)
...+..+..+++| ..+++.+|.+....+..+
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 7766667766666 778888776654333222
Q ss_pred ------------------------------------hcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHH
Q 012186 249 ------------------------------------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292 (469)
Q Consensus 249 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 292 (469)
..+++|+.|+++++.+.. .+..+..+ +|+.|++++|.+....
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFP 320 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccC
Confidence 234555555555554442 22333333 5555555555433111
Q ss_pred HHH-------------------hhCCCCCCEEeccCCCCChhh--HHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc
Q 012186 293 LVN-------------------LTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (469)
Q Consensus 293 ~~~-------------------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (469)
... ...+++|+.|++++|.+.... +..+..+++|++|++++|.+....+. +..+++|+
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~ 399 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence 100 034567777777777665443 45566778888888888776654433 67788888
Q ss_pred EEEccCCCCCHHHH-HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC-HHHHHHHhcCCCCCeeeccC
Q 012186 352 SLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQ 429 (469)
Q Consensus 352 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~ 429 (469)
.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +..|..+..+++|++|++++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 88888887766433 35678899999999999988888888888999999999999987 45677788899999999999
Q ss_pred CCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461 (469)
Q Consensus 430 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 461 (469)
| .++...+..+..+++|+.|++++|+++...
T Consensus 480 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 480 C-QLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred C-ccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 9 788888888899999999999999987654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-35 Score=292.57 Aligned_cols=390 Identities=16% Similarity=0.139 Sum_probs=280.2
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
++++++|++++|.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+. .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCE
Confidence 378999999999988877788899999999999984 677777788889999999999998753 33433 7889999
Q ss_pred Eecccccccccc-cccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc--Chhhhhhcc-----------
Q 012186 136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLK----------- 201 (469)
Q Consensus 136 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~----------- 201 (469)
|++++|...... +..+.++++|++|+++++. +.......+..+ +|+.|++++|.+ ....+..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCc-cccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999987544322 3678889999999998844 443333333333 349999988877 433333332
Q ss_pred ---------------CCCCCCeeeccCCCCc----hhhHHhhhcCCCCcEEECCCCCCChhHHHHh---hcCCCccEEEc
Q 012186 202 ---------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL 259 (469)
Q Consensus 202 ---------------~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l 259 (469)
.+++|+.+++++|... ......+..+++|+.+++.++.+.......+ ...++|+.|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 3456777777766311 1123345666777766666665544322111 22346777777
Q ss_pred cCCCCchHHHHHh-------------------------------hCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186 260 GFNEITDECLVHL-------------------------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (469)
Q Consensus 260 ~~~~~~~~~~~~~-------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (469)
++|.+.+..+..+ ....+|+.|+++++.+.... ....+++|++|+++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence 6665543222211 11245777777777654321 12578899999999
Q ss_pred CCCCChhhHHHhhCCCCCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCCCCCC
Q 012186 309 DTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT 385 (469)
Q Consensus 309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 385 (469)
+|.+....+..++.+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++. .....+..+++|++|++++|+++
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 999888777778899999999999998886 345668889999999999999887 43445667899999999999998
Q ss_pred hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
+..+..+. ++|+.|++++|+++.. |..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 76655432 7999999999999865 555668999999999999 788655555888999999999999986
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-33 Score=268.92 Aligned_cols=340 Identities=28% Similarity=0.342 Sum_probs=254.3
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+++++|+++++.+.. ++ .+..+++|++|++++| .++...+ +.++++|++|++++|.+. ...+ +..+++|++|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence 478999999888764 33 4778899999999885 4555433 888999999999988753 3223 8889999999
Q ss_pred ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (469)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (469)
++++|. +...+ .+.++++|++|++++|. +.. ...+..+++|+.|++.+ .+... ..+..+++|++|++++|.+
T Consensus 118 ~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSC-CCCCG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCC-CCCCh-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 998874 33333 37888999999998854 332 23577888899998863 33332 2377888889999988877
Q ss_pred chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHh
Q 012186 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (469)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 296 (469)
... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 664 347788888888888888776543 66788888888888887753 356778888888888887765433 6
Q ss_pred hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (469)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (469)
..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 778888888888887776543 6778888888888887776543 6677888888888888776544 667888888
Q ss_pred eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 88888887775 356778888888888888877665 677888888888888
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-36 Score=304.53 Aligned_cols=370 Identities=15% Similarity=0.101 Sum_probs=287.5
Q ss_pred hhHhhhcCCCCCEEecCCCcccCh-----------------hHhHhhh--CCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186 73 GLIHLKDCSNLQSLDFNFCIQISD-----------------GGLEHLR--GLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (469)
Q Consensus 73 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (469)
+|..+.++++|+.|++++| .++. ..|..++ ++++|++|++++|.. ....|..+.++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCC
Confidence 6778899999999999995 5666 3677776 999999999999974 45567889999999
Q ss_pred CEEeccccccccc--ccccc-------cCCCCccEEEccCCCCCChhhhh--cccCCCCCCEEEecccccChhhhhhccC
Q 012186 134 VKLDLERCTRIHG--GLVNL-------KGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGIAYLKG 202 (469)
Q Consensus 134 ~~L~l~~~~~~~~--~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 202 (469)
++|++++|..+.. .|..+ ..+++|++|++++|. +. ..+. .+..+++|+.|++++|.+... + .+..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQKMVKLGLLDCVHNKVRHL-E-AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHTTCTTCCEEECTTSCCCBC-C-CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC-ccCChhhhhcCCCCCEEECCCCCcccc-h-hhcC
Confidence 9999999863443 44433 455699999999965 44 3455 789999999999999998843 3 7899
Q ss_pred CCCCCeeeccCCCCchhhHHhhhcCCC-CcEEECCCCCCChhHHHHhhcCC--CccEEEccCCCCchHHHHH---hh--C
Q 012186 203 LQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVH---LK--G 274 (469)
Q Consensus 203 l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~ 274 (469)
+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+.+..+.. +. .
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 999999999999988 45677888998 999999999988 4455555544 4999999999987643321 12 3
Q ss_pred CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhh-------CCCCCcEEecccCCCCchHHHhhh--
Q 012186 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLA-- 345 (469)
Q Consensus 275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~-- 345 (469)
+++|+.|++++|.+...+...+..+++|+.|++++|.+.......+. ++++|+.|++++|.+.. .+..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~ 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhc
Confidence 45899999999998865555566899999999999988754333332 22399999999999884 455665
Q ss_pred CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCC------CCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (469)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (469)
.+++|+.|++++|.++.. +..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+.. .|..+ .
T Consensus 751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~ 826 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--T 826 (876)
T ss_dssp TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--C
T ss_pred cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--c
Confidence 899999999999999884 56677999999999976 77888889999999999999999999954 45554 3
Q ss_pred CCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
++|+.|+|++| .+....+..+.....+..+.+.+++
T Consensus 827 ~~L~~LdLs~N-~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 827 PQLYILDIADN-PNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp SSSCEEECCSC-TTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCCEEECCCC-CCCccChHHccccccchheeecCCC
Confidence 79999999999 5555443333333333444444433
No 27
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.1e-32 Score=268.96 Aligned_cols=459 Identities=21% Similarity=0.215 Sum_probs=323.2
Q ss_pred CCcHHHHHHHHHHHH-hccCCCH--HhHHhh--ccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh----
Q 012186 1 MLPRDISQQIFNELV-YSRCLTE--VSLEAF--RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD---- 71 (469)
Q Consensus 1 ~~~~e~~~~~~~~lv-~~~~~~~--~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---- 71 (469)
.+|+|+...+|..|- .+..... +..... .....+++.+..+...... ....+.+++++|+++++....
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhccc
Confidence 379999999997654 2111100 000000 0112445666665544433 344567899999999864211
Q ss_pred -----------HhhHhhhcCCCCCEEecCCCcccChhHhHhhh-CCCCCCEEeCCCCCcCcHH-HHHHHhCCCCCCEEec
Q 012186 72 -----------SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDL 138 (469)
Q Consensus 72 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l 138 (469)
.+......+++|+.|++++| .+++..+..+. .+++|++|++++|..++.. .+.....+++|++|++
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 11233468999999999996 57887777775 7999999999999545544 4455558999999999
Q ss_pred cccccccccccc----ccCCCCccEEEccCCC-CCChhhhhc-ccCCCCCCEEEecccccChhhhhhccCCCCCCeeecc
Q 012186 139 ERCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (469)
Q Consensus 139 ~~~~~~~~~~~~----l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (469)
++|......+.. ...+++|++|++++|. .+....... ...+++|++|++.++.........+..+++|+.|+++
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 998633333222 3477899999999875 233222222 3457999999999883333355667889999999977
Q ss_pred CCCC--c----hhhHHhhhcCCCCcEEE-CCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHH-HhhCCCCCCEEecC
Q 012186 213 GCPV--T----AACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD 284 (469)
Q Consensus 213 ~~~~--~----~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 284 (469)
++.. . ...+..+.++++|+.+. +.... ....+..+..+++|+.|++++|.+++.... .+..+++|+.|++.
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 6532 1 12344678899999993 43322 122333445789999999999988765433 35788999999999
Q ss_pred CCCCChHHHHHhh-CCCCCCEEeccC---------CCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhh-CCCCCcE
Q 012186 285 SCGIGDEGLVNLT-GLCNLKCLELSD---------TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKS 352 (469)
Q Consensus 285 ~~~~~~~~~~~~~-~~~~L~~L~l~~---------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~ 352 (469)
+| +.......+. .+++|++|++.+ +.++......+. .+++|+.|.+..+.+++.....+. .+++|+.
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 88 5444444443 589999999833 456655555554 589999998888899887777776 5899999
Q ss_pred EEcc--C----CCCC----HHH-HHHHhcCCCCCEeecCCCCCChhHHHHhHc-CCCCCeeeeCCCCCCHHHHHHH-hcC
Q 012186 353 LNLD--A----RQIT----DTG-LAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDL 419 (469)
Q Consensus 353 L~l~--~----~~~~----~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~ 419 (469)
|+++ + +.++ ... ...+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ .++
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 9998 3 5666 222 23466899999999988 788877777765 8999999999999998877776 679
Q ss_pred CCCCeeeccCCCCCChhHHHH-HHhCcccccccccCCCCCHHHHHhhhh
Q 012186 420 SSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLNH 467 (469)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~ 467 (469)
++|++|++++| .++...+.. +..+++|+.|++++|++++.|++.+++
T Consensus 481 ~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 481 DSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp TTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred CCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 99999999999 557666553 346899999999999999999998854
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-32 Score=263.12 Aligned_cols=345 Identities=29% Similarity=0.406 Sum_probs=179.0
Q ss_pred CCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (469)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 159 (469)
+++++.|++.++ .+.. ...+..+++|++|++++|.+. ...+ +..+++|++|++++|. +...+. +.++++|++
T Consensus 45 l~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred hccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCE
Confidence 445556665553 2322 123455556666666655432 2112 5556666666665543 222222 555666666
Q ss_pred EEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC
Q 012186 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (469)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (469)
|++++|. +.... .+..+++|++|++++|.+... ..+..+++|+.|++.+ .+... ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQ-ITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSC-CCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence 6665533 22221 255556666666655555432 2355555666665542 22221 125555666666666655
Q ss_pred CChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHH
Q 012186 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319 (469)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (469)
+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 5432 234555566666666555554322 44455566666665555432 234455566666666655544332
Q ss_pred hhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCC
Q 012186 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399 (469)
Q Consensus 320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 399 (469)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.++...+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 4555666666666665554333 4555666666666655554322 4555666666666665555443 44556666
Q ss_pred eeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 400 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
.|++++|.+++. ..+..+++|+.|++++| .+.+..| +..+++|+.|++++|+++.
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccC
Confidence 666666655554 23455566666666666 4554444 5555666666666555443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-32 Score=250.02 Aligned_cols=307 Identities=29% Similarity=0.346 Sum_probs=183.7
Q ss_pred hCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCC
Q 012186 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182 (469)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 182 (469)
..+++|++|+++++.+.. .+ .+..+++|++|++++|. +...+. +..+++|++|++++|. +.. ...+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTC
T ss_pred hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcC
Confidence 345666666666665321 11 25556666666666653 222222 5555555555555532 221 1234455555
Q ss_pred CEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCC
Q 012186 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (469)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (469)
++|+++++.+..... +..++ +|+.|++++|...... ..+..+++|+.|+++++
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~------------------------~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLT------------------------KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCT------------------------TCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS
T ss_pred CEEECcCCcccCchh--hccCC------------------------ceeEEECCCCCCcccc-cchhhCCCCcEEEecCC
Confidence 555555554443221 44444 4444444444322211 12445555555555555
Q ss_pred CCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHH
Q 012186 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342 (469)
Q Consensus 263 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 342 (469)
.+....+ +..+++|+.|++++|.+..... +..+++|+.+++.+|.+..... +..+++|+.|++++|.+....+
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 5443222 4555666666666665543322 5556666666666666555433 5666777777777776665543
Q ss_pred hhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCC
Q 012186 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422 (469)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 422 (469)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 66777777777777777664 3466778888888888877775 356778888888888888888878888888888
Q ss_pred CeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 423 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
++|++++| .++...+ +..+++|+.|++++|++++
T Consensus 314 ~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 314 TTLFLSQN-HITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SEEECCSS-SCCCCGG--GGGCTTCSEESSSCC----
T ss_pred CEEEccCC-ccccccC--hhhhhccceeehhhhcccC
Confidence 88888888 5776665 7788888888888888763
No 30
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.2e-31 Score=266.74 Aligned_cols=413 Identities=20% Similarity=0.209 Sum_probs=298.5
Q ss_pred HHHhcCCCccEEEecCCCC--------------Ch-HhhHhhhcCCCCCEEecCCCcccChhHhHhhhC-CCC-CCEEeC
Q 012186 51 VIASQGSSLLSVDLSGSDV--------------TD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLSF 113 (469)
Q Consensus 51 ~~~~~~~~l~~L~l~~~~~--------------~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~L~l 113 (469)
....+.+++++|+++++.. .. ........+++|++|++++| .+++..+..+.. +++ |++|++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEEC
Confidence 3455678899999976321 11 12233348999999999986 677777777765 444 999999
Q ss_pred CCCCcCcHH-HHHHHhCCCCCCEEecccccccccc----cccccCCCCccEEEccCCCCC--C-hhhhhcccCCCCCCEE
Q 012186 114 RRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKSL 185 (469)
Q Consensus 114 ~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~--~-~~~~~~~~~~~~L~~L 185 (469)
++|...... .+.....+++|++|++++|...... ......+++|++|+++++... . ......+..+++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 988744333 3344558899999999998543332 223467889999999885542 1 2233445678999999
Q ss_pred EecccccChhhhhhccCCCCCCeeeccCCCCc---hhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCC
Q 012186 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (469)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (469)
++.++.+.+. +..+..+++|+.|++++.... ......+..+++|+.+.+.++.. ...+..+..+++|+.|++++|
T Consensus 226 ~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 9998887753 466788899999999754222 11223456778999999887532 334555677889999999998
Q ss_pred CCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHh-hCCCCCCEEeccC-----------CCCChhhHHH-hhCCCCCcE
Q 012186 263 EITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLES 328 (469)
Q Consensus 263 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~ 328 (469)
.+++... ..+..+++|+.|++. +.+.......+ ..+++|++|++.+ +.++...... ...+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 8776544 446789999999998 33444444443 5788999999983 4566554444 456899999
Q ss_pred EecccCCCCchHHHhhhC-CCCCcEEEcc----CCCCCHH-----HHHHHhcCCCCCEeecCCCC--CChhHHHHhH-cC
Q 012186 329 INLSFTGISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYLR-NF 395 (469)
Q Consensus 329 L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~-~~ 395 (469)
|.++.+.+++..+..++. +++|+.|+++ .+.++.. ....+.++++|++|+++.|. +++.....+. .+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 999888898888877776 8999999996 4566642 33456679999999997654 7777666664 48
Q ss_pred CCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeeccCCCCCChhHH-HHHHhCcccccccccCCCCCHHHHHhhhhc
Q 012186 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLNHA 468 (469)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 468 (469)
++|+.|++++|++++... ..+.++++|++|++++|+ ++.... ..+..+++|+.|++++|++++.|++.+++.
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 999999999999988554 445788999999999994 776544 445689999999999999999999888754
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-34 Score=289.06 Aligned_cols=399 Identities=22% Similarity=0.227 Sum_probs=272.2
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
-++++++|+|++|.++...+..|.++++|++|++++| .++...+.+|.++++|++|+|++|.+ ....+..|..+++|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCC
Confidence 3568999999999999877788999999999999995 68887788899999999999999974 455567789999999
Q ss_pred EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC----Ceee
Q 012186 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLN 210 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~ 210 (469)
+|++++|......+..+.++++|++|+++++.......+..+..+++|++|++++|.++......+..++++ ..++
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999999854444445689999999999999654443455677889999999999998876554444332221 1222
Q ss_pred ccCCCCch------------------------hhHHhhhcCCCC------------------------------------
Q 012186 211 LEGCPVTA------------------------ACLDSLSALGSL------------------------------------ 230 (469)
Q Consensus 211 l~~~~~~~------------------------~~~~~~~~~~~L------------------------------------ 230 (469)
++.+.+.. .....+..++.+
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 22222110 111111122211
Q ss_pred ---------------------cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHH-------------------H
Q 012186 231 ---------------------FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------------------V 270 (469)
Q Consensus 231 ---------------------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~ 270 (469)
+.+.+..+.+.. ...+.....++.|++.++.+..... .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 112111111110 0112233344444443332211000 0
Q ss_pred HhhCCCCCCEEecCCCCCChH--HH-----------------------HHhhCCCCCCEEeccCCCCChh-hHHHhhCCC
Q 012186 271 HLKGLTNLESLNLDSCGIGDE--GL-----------------------VNLTGLCNLKCLELSDTQVGSS-GLRHLSGLT 324 (469)
Q Consensus 271 ~~~~l~~L~~L~l~~~~~~~~--~~-----------------------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 324 (469)
....+++|+.++++.+.+... .+ ..+..+++|+.+++..+..... ....+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 112344555555555443211 11 1233445556666555432221 122355778
Q ss_pred CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeee
Q 012186 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (469)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (469)
+++.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|++|++++|++++..|..+..+++|+.|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 88888888888777666777788999999999886443 34556778899999999999999988888999999999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhC-cccccccccCCCCC
Q 012186 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRIT 458 (469)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~ 458 (469)
++|++++..+..|.++++|+.|++++| .++...++.+..+ ++|+.|++++|++.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999988888889999999999999 8888888888887 68999999998874
No 32
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.6e-31 Score=265.71 Aligned_cols=408 Identities=18% Similarity=0.153 Sum_probs=307.8
Q ss_pred CCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhc-CCC-CCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcC
Q 012186 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119 (469)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 119 (469)
+....|...+...++++++|+++++.+++..+..+.+ +++ |++|++++|..++......+ .++++|++|++++|.+.
T Consensus 98 ~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 98 GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp CBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred ccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence 4456788888888999999999999999888887765 555 99999999876665554443 58999999999999642
Q ss_pred cH---HHHHHHhCCCCCCEEeccccccc----ccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc
Q 012186 120 TA---QGMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (469)
Q Consensus 120 ~~---~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 192 (469)
.. ..+.....+++|++|+++++... ...+..+.++++|++|++.+|.. .. .+..+..+++|++|++.....
T Consensus 178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~-l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LE-LVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GG-GHHHHHHCTTCCEEEECBCCC
T ss_pred CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HH-HHHHHhhhhHHHhhccccccc
Confidence 21 14556678999999999987543 12234466899999999998653 32 446778899999999975432
Q ss_pred C---hhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCccEEEccCCCCchH-
Q 012186 193 T---DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE- 267 (469)
Q Consensus 193 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~- 267 (469)
. ......+..+++|+.+.++++... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++++ .+.+.
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~ 333 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRG 333 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHH
T ss_pred ccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHH
Confidence 2 223345678889999999886433 335667788999999999999877655 3468899999999994 44433
Q ss_pred HHHHhhCCCCCCEEecCC-----------CCCChHHHHH-hhCCCCCCEEeccCCCCChhhHHHhhC-CCCCcEEecc--
Q 012186 268 CLVHLKGLTNLESLNLDS-----------CGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS-- 332 (469)
Q Consensus 268 ~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~-- 332 (469)
.+.....+++|++|++++ +.++...... ...+++|++|++..+.++......++. +++|+.|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 334456789999999994 4666655544 346899999999888888887777765 9999999997
Q ss_pred --cCCCCch-----HHHhhhCCCCCcEEEccCC--CCCHHHHHHHh-cCCCCCEeecCCCCCChhH-HHHhHcCCCCCee
Q 012186 333 --FTGISDG-----SLRKLAGLSSLKSLNLDAR--QITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSL 401 (469)
Q Consensus 333 --~~~~~~~-----~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 401 (469)
.+.+++. ....+..+++|+.|+++.| .++...+..+. .+++|++|++++|.+++.. +..+..+++|+.|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 4456542 3444667999999999864 47777666665 4899999999999999854 4556889999999
Q ss_pred eeCCCCCCHHHHHH-HhcCCCCCeeeccCCCCCChhHHHHHH-hCcccccccccCC
Q 012186 402 EICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNS 455 (469)
Q Consensus 402 ~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~ 455 (469)
++++|.+++..+.. ...+++|++|++++| .++......+. .+|.+....+..+
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999998765544 467999999999999 57776544443 5677766655544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=272.71 Aligned_cols=300 Identities=21% Similarity=0.197 Sum_probs=233.5
Q ss_pred CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (469)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (469)
+++++|++++|......+..+.++++|++|+++++ .+....+..+.++++|++|++++|.++......+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57888998887544444567888888888888884 46656667788888888888888888877666778888888888
Q ss_pred ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (469)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 290 (469)
+++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 88888877767778888888888888888877666677788888888888888877666677888888888888887776
Q ss_pred HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (469)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 370 (469)
.....+..+++|+.|+++++......+.......+|+.|++++|.+.......+..+++|+.|++++|.++......+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 55556777888888888887655444444444557888888888877766667778888888888888887766666777
Q ss_pred CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..|..+++|++|++++|+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 8888888888888887777777788888888888888877766666777888888888884
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.2e-30 Score=239.79 Aligned_cols=303 Identities=30% Similarity=0.355 Sum_probs=172.7
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
+++++|+++++.+... ..+..+++|++|++++| .++...+ +..+++|++|++++|.+.. . ..+..+++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD--I-SALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEE
T ss_pred ccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEE
Confidence 4566666666665432 23556666666666664 3443322 5566666666666664322 1 235556666666
Q ss_pred ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (469)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (469)
++++|. +...+. +..+++|++|++++|..... ...+..+++|++|+++++.+.....
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence 665543 222221 55555555555555433332 1224445555555555544443221
Q ss_pred chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHh
Q 012186 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (469)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 296 (469)
+..+++|+.|++++|.+..... +..+++|+.++++++.+.+..+ +..+++|+.|++++|.+....+ +
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 173 -------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp -------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred -------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 4444555555555554443222 4455555555555555543222 4555566666666665544322 5
Q ss_pred hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (469)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (469)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5666666666666655543 2456677777777777766654 34667778888888888887777777778888888
Q ss_pred eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
|++++|++++..+ +..+++|+.|++++|.++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888877655 667888888888888765
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=5.5e-33 Score=273.82 Aligned_cols=371 Identities=18% Similarity=0.148 Sum_probs=263.5
Q ss_pred hcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (469)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (469)
...+++++|++++|.+++..|..|..+++|++|++++| .++.. +.. .+++|++|++++|.+.....|..++++++|
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 35689999999999999888899999999999999995 56643 333 799999999999986433345789999999
Q ss_pred CEEecccccccccccccccCCCCccEEEccCCCCC-Chhhhhcc--------------------------cCCCCCCEEE
Q 012186 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI-TDSDMKPL--------------------------SGLTNLKSLQ 186 (469)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--------------------------~~~~~L~~L~ 186 (469)
++|++++|.........+.++ +|++|+++++... ....+..+ ..+++|+.++
T Consensus 149 ~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 149 TFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp CEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred cEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 999999975443333333333 4499999986530 22222222 2355677777
Q ss_pred ecccccC----hhhhhhccCCCCCCeeeccCCCCchhhHHh---hhcCCCCcEEECCCCCCChhHH--------------
Q 012186 187 ISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGC-------------- 245 (469)
Q Consensus 187 l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-------------- 245 (469)
++++... ......+..+++|+.+++.++.+....... ....++|++|++++|.+.+..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 7765311 112234455666666665555443321111 1122355555555554432111
Q ss_pred -----------------HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186 246 -----------------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (469)
Q Consensus 246 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (469)
..+....+|+.|+++++.+.... ....+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 11122356888888888775321 12678899999999999887667778899999999999
Q ss_pred CCCCChh--hHHHhhCCCCCcEEecccCCCCc-hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186 309 DTQVGSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (469)
Q Consensus 309 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (469)
+|.+... .+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|.+++..+..+. ++|++|++++|+++
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 9998873 34668899999999999999877 3334567789999999999999875443322 69999999999999
Q ss_pred hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCC
Q 012186 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434 (469)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 434 (469)
.. |..+..+++|+.|++++|+++...+..+..+++|+.|++++|+...
T Consensus 464 ~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 464 SI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred cc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 64 5555589999999999999997644448889999999999995433
No 36
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2.4e-30 Score=257.45 Aligned_cols=419 Identities=19% Similarity=0.181 Sum_probs=312.1
Q ss_pred ceeEEecCCCC-------------CCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhh-cCCCCCEEecCCCcccChh
Q 012186 32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDG 97 (469)
Q Consensus 32 ~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 97 (469)
.++.+.+..++ +....|...+...++++++|+++++.+++..+..+. .+++|++|++++|..++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 36666665543 334567777888899999999999999998888775 7999999999998777776
Q ss_pred HhHhh-hCCCCCCEEeCCCCCcCcHHHHH----HHhCCCCCCEEeccccc-ccc-ccc-ccccCCCCccEEEccCCCCCC
Q 012186 98 GLEHL-RGLSNLTSLSFRRNNAITAQGMK----AFAGLINLVKLDLERCT-RIH-GGL-VNLKGLMKLESLNIKWCNCIT 169 (469)
Q Consensus 98 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~-~~~-~~~-~~l~~l~~L~~L~l~~~~~~~ 169 (469)
....+ .++++|++|++++|.+ +...+. ....+++|++|++++|. .+. ... .....+++|++|++.+|....
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 55554 5899999999999873 222222 23367899999999875 111 111 223568999999999975544
Q ss_pred hhhhhcccCCCCCCEEEecccc-------cChhhhhhccCCCCCCee-eccCCCCchhhHHhhhcCCCCcEEECCCCCCC
Q 012186 170 DSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (469)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (469)
. .+..+..+++|+.|++..+. +.. ....+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+.
T Consensus 226 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 K-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp H-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred H-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 4 55666789999999976543 222 23467889999999 4444322 223444456899999999999987
Q ss_pred hhHHHH-hhcCCCccEEEccCCCCchHHHH-HhhCCCCCCEEecC---------CCCCChHHHHHhh-CCCCCCEEeccC
Q 012186 242 DDGCEK-FSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD---------SCGIGDEGLVNLT-GLCNLKCLELSD 309 (469)
Q Consensus 242 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~ 309 (469)
...... +..+++|+.|++.++ +.+.... ....+++|+.|++. .+.++......+. .+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 665443 568999999999988 4433333 33568999999993 3466666665555 489999999988
Q ss_pred CCCChhhHHHhh-CCCCCcEEecc--c----CCCC----ch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhc-CCCCCE
Q 012186 310 TQVGSSGLRHLS-GLTNLESINLS--F----TGIS----DG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTH 376 (469)
Q Consensus 310 ~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~----~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~ 376 (469)
+.++......+. .+++|+.|+++ + +.++ +. ....+..+++|+.|++++ .++...+..+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 888887776665 69999999999 3 3555 22 223356789999999987 888877777765 999999
Q ss_pred eecCCCCCChhHHHHh-HcCCCCCeeeeCCCCCCHHHHHHH-hcCCCCCeeeccCCCCCChhHHHHH-HhCccccccccc
Q 012186 377 LDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVS 453 (469)
Q Consensus 377 L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~ 453 (469)
|++++|.+++.....+ ..+++|+.|++++|.+++..+..+ ..+++|++|++++| .++......+ ..+|.|+...+.
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEEC
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999998777766 779999999999999988766544 56899999999999 5577666666 578888776666
Q ss_pred CCCC
Q 012186 454 NSRI 457 (469)
Q Consensus 454 ~~~~ 457 (469)
.+.-
T Consensus 540 ~~~~ 543 (594)
T 2p1m_B 540 ERGA 543 (594)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 5543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.3e-32 Score=264.17 Aligned_cols=302 Identities=22% Similarity=0.219 Sum_probs=263.7
Q ss_pred CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEE
Q 012186 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (469)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (469)
+++++|++++|.+ ....+..|..+++|++|++++|......+..+.++++|++|+++++. +.......+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 5899999999974 45556788999999999999986555557789999999999999854 565556678899999999
Q ss_pred EecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc
Q 012186 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (469)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (469)
++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++.+|.+.......+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999998877788899999999999999988877778999999999999999998877778899999999999999988
Q ss_pred hHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh
Q 012186 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (469)
Q Consensus 266 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (469)
...+..+..+++|+.|++++|......+.......+|+.|++++|.+.......+..+++|+.|++++|.+....+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 76666788899999999999865544444444556999999999999888778889999999999999999888777888
Q ss_pred CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
.+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 9999999999999999887788889999999999999999988888888999999999999876
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=251.52 Aligned_cols=313 Identities=16% Similarity=0.163 Sum_probs=240.9
Q ss_pred CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCC
Q 012186 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (469)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (469)
.++++++|+++++.+ ....+..+..+++|++|++++|......+..+..+++|++|+++++. +....+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 467899999998864 44445667889999999999986444444578899999999999854 5556667788899999
Q ss_pred EEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC
Q 012186 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (469)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (469)
+|++++|.++..+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999988876666678899999999999988877677788899999999999888764 25667889999999887
Q ss_pred CchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh
Q 012186 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (469)
Q Consensus 264 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 343 (469)
+.. +...++|+.|++++|.+..... ...++|+.|++.+|.+... ..+..+++|+.|++++|.+.+..+..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 764 3455688899998887765421 2356888888888877764 46778888888888888888777777
Q ss_pred hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (469)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 423 (469)
+..+++|+.|++++|.++... ..+..+++|++|++++|+++.. +..+..+++|+.|++++|.++... +..+++|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~ 342 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 342 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred ccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccCC
Confidence 888888888888888887642 2335678888888888887754 445667788888888888877652 55677888
Q ss_pred eeeccCCCCCChhH
Q 012186 424 LLNLSQNCNLTDKT 437 (469)
Q Consensus 424 ~L~l~~~~~l~~~~ 437 (469)
+|++++| .+....
T Consensus 343 ~L~l~~N-~~~~~~ 355 (390)
T 3o6n_A 343 NLTLSHN-DWDCNS 355 (390)
T ss_dssp EEECCSS-CEEHHH
T ss_pred EEEcCCC-Cccchh
Confidence 8888888 455433
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-30 Score=242.47 Aligned_cols=317 Identities=16% Similarity=0.113 Sum_probs=257.6
Q ss_pred cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (469)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (469)
.+++++.|+++++ .++......+..+++|++|++++|.+ ....+..+..+++|++|++++|......+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 5689999999984 57776667788999999999999874 445556788999999999999865545556688999999
Q ss_pred EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (469)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (469)
+|+++++. +.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 99999854 5544445568899999999999999877777789999999999999988765 3567899999999998
Q ss_pred CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH
Q 012186 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (469)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (469)
.+.. +...++|+.|++++|.+.... ....++|+.|++++|.+... ..+..+++|++|++++|.+....+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 8764 345678999999999887542 13357899999999988764 4678899999999999999887778
Q ss_pred HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (469)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (469)
.+..+++|+.|++++|.+.... ..+..+++|+.|++++|.++.. +..+..+++|++|++++|++++.. +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccC
Confidence 8889999999999999887643 3446789999999999998865 334667899999999999988763 6678999
Q ss_pred CeeeeCCCCCCHHHHHHH
Q 012186 399 RSLEICGGGLTDAGVKHI 416 (469)
Q Consensus 399 ~~L~l~~~~~~~~~~~~l 416 (469)
+.|++++|.+.......+
T Consensus 342 ~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SEEECCSSCEEHHHHHHH
T ss_pred CEEEcCCCCccchhHHHH
Confidence 999999999987655443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=257.65 Aligned_cols=313 Identities=16% Similarity=0.157 Sum_probs=251.9
Q ss_pred CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCC
Q 012186 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (469)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (469)
.+.+++.++++++.+ ....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 367899999998864 44555678889999999999986444444588999999999999854 6666667788999999
Q ss_pred EEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC
Q 012186 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (469)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (469)
+|++++|.++..+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.... +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999998777777889999999999999988877778899999999999999887643 5667899999999988
Q ss_pred CchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh
Q 012186 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (469)
Q Consensus 264 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 343 (469)
+.. +...++|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|+.|++++|.+....+..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 764 4556789999999988764322 2346899999999988763 56788899999999999888887788
Q ss_pred hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (469)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 423 (469)
+..+++|+.|++++|.++.. +..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++... +..+++|+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred hcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 88889999999999888875 3334568899999999998885 4556778889999999998887762 56688899
Q ss_pred eeeccCCCCCChhH
Q 012186 424 LLNLSQNCNLTDKT 437 (469)
Q Consensus 424 ~L~l~~~~~l~~~~ 437 (469)
.|++++| .+....
T Consensus 349 ~L~l~~N-~~~~~~ 361 (597)
T 3oja_B 349 NLTLSHN-DWDCNS 361 (597)
T ss_dssp EEECCSS-CEEHHH
T ss_pred EEEeeCC-CCCChh
Confidence 9999998 444433
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=9.1e-30 Score=242.68 Aligned_cols=337 Identities=19% Similarity=0.139 Sum_probs=220.5
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
.+++++|+++++.+++. | .+..+++|++|++++| .++.. .++.+++|++|++++|.+... + ++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence 46889999998888764 4 6788899999999885 46554 278888999999998875332 2 778889999
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (469)
|++++|. +...+ +..+++|++|+++++. +... .++.+++|++|++++|...+.. .+..+++|++|++++|.
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9998874 33332 7888889999998854 4432 3677888999998888433222 46778888899998888
Q ss_pred CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (469)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 295 (469)
++... +..+++|+.|++++|.+... .+..+++|+.|++++|.+++. + +..+++|+.|++++|.+....
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 77742 77788888898888887764 367788888888888888763 3 677888888888888776543
Q ss_pred hhCCCCCCEEeccCCCCC----------hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186 296 LTGLCNLKCLELSDTQVG----------SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (469)
+..+++|+.|++.++.+. ...+ ++.+++|+.|++++|......+. ..++|+.|++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l---------- 314 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL---------- 314 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC----------
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech----------
Confidence 345666666655543221 1111 23445555555555533222211 1122222222
Q ss_pred HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCc
Q 012186 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445 (469)
Q Consensus 366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 445 (469)
..+++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|.+++| .+.+. +.+.
T Consensus 315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n-~l~g~-----~~~~ 374 (457)
T 3bz5_A 315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN-NFEAE-----GQTI 374 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT-SEEEE-----EEEE
T ss_pred ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC-cEEec-----ceee
Confidence 2335666666666666663 25566666666666666654 244555555555 33332 2445
Q ss_pred ccccccccCCCCC
Q 012186 446 GLVSLNVSNSRIT 458 (469)
Q Consensus 446 ~L~~L~l~~~~~~ 458 (469)
+|+.+++++|+++
T Consensus 375 ~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 375 TMPKETLTNNSLT 387 (457)
T ss_dssp ECCCBCCBTTBEE
T ss_pred ecCccccccCcEE
Confidence 5666666666654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.6e-29 Score=250.38 Aligned_cols=317 Identities=16% Similarity=0.109 Sum_probs=265.1
Q ss_pred cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (469)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (469)
.+.+++.++++++ .+....+..+..+++|++|++++|.+ ....+..++.+++|++|++++|......+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 5689999999984 67777777789999999999999974 555566899999999999999865555556689999999
Q ss_pred EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (469)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (469)
+|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 99999954 5555555678999999999999999988888899999999999999988775 3567899999999999
Q ss_pred CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH
Q 012186 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (469)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (469)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 8765 3456789999999998875322 2246899999999988763 5688899999999999999988888
Q ss_pred HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (469)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (469)
.++.+++|+.|++++|.+... +..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+++.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 899999999999999998874 34456789999999999999865 445678899999999999998763 6678999
Q ss_pred CeeeeCCCCCCHHHHHHH
Q 012186 399 RSLEICGGGLTDAGVKHI 416 (469)
Q Consensus 399 ~~L~l~~~~~~~~~~~~l 416 (469)
+.|++++|.+....+..+
T Consensus 348 ~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp SEEECCSSCEEHHHHHHH
T ss_pred CEEEeeCCCCCChhHHHH
Confidence 999999999987654433
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.7e-30 Score=259.44 Aligned_cols=393 Identities=19% Similarity=0.189 Sum_probs=274.5
Q ss_pred cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (469)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (469)
+..+.++.+++ .+|..+. +++++|++++ +.++...+.+|.++++|++|++++|.+ ....+.+|.++++|++|+++
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEcc
Confidence 34556655565 3454331 4799999999 578888788999999999999999974 45556789999999999999
Q ss_pred cccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCch
Q 012186 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTA 218 (469)
Q Consensus 140 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 218 (469)
+|......+..+..+++|++|++++|. +.......++++++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 985433344668999999999999954 5655666789999999999999988764 34667889999999999998877
Q ss_pred hhHHhhhcCCC----CcEEECCCCCCChh------------------------HHHHhhcCCCccEEEc-----------
Q 012186 219 ACLDSLSALGS----LFYLNLNRCQLSDD------------------------GCEKFSKIGSLKVLNL----------- 259 (469)
Q Consensus 219 ~~~~~~~~~~~----L~~L~l~~~~~~~~------------------------~~~~~~~~~~L~~L~l----------- 259 (469)
..+..+..+.+ ...+++..+.+... ....+..++.++...+
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 65555443322 22445544433211 1122233333333222
Q ss_pred ----------------------------------------------cCCCCchHHHHHhhCCCCCCEEecCCCCCChHH-
Q 012186 260 ----------------------------------------------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG- 292 (469)
Q Consensus 260 ----------------------------------------------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~- 292 (469)
.++.+.. ...+.....++.|++.++.+....
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCc
Confidence 1111111 012233456777777665332111
Q ss_pred ------------------HHHhhCCCCCCEEeccCCCCChh--hHHHhhCC-----------------------CCCcEE
Q 012186 293 ------------------LVNLTGLCNLKCLELSDTQVGSS--GLRHLSGL-----------------------TNLESI 329 (469)
Q Consensus 293 ------------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~-----------------------~~L~~L 329 (469)
......+++|+.++++++.+... .+.....+ ++|+.+
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL 425 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence 01123567899999988865432 12223334 444444
Q ss_pred ecccCCCCch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCC
Q 012186 330 NLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGG 407 (469)
Q Consensus 330 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 407 (469)
.+..+..... ....+..+++++.++++.|.+....+..+..++.|+.|++++|... ...|..+..+++|+.|++++|+
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 4444322211 1234456778888888888887766677778899999999999744 4456778889999999999999
Q ss_pred CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461 (469)
Q Consensus 408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 461 (469)
+++..|..|.++++|++|++++| .++...+..+.++++|+.|++++|+++...
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred cCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 99998889999999999999999 899988888999999999999999987643
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.6e-29 Score=238.52 Aligned_cols=329 Identities=19% Similarity=0.145 Sum_probs=240.4
Q ss_pred HhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151 (469)
Q Consensus 72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 151 (469)
..+..+.++++|++|+++++ .++.. + .+..+++|++|++++|.+.. .+ ++.+++|++|++++|. +... .+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n-~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~-l~~~--~~ 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNS-SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNK-LTNL--DV 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSS-CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSC-CSCC--CC
T ss_pred ccccChhHcCCCCEEEccCC-CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCC-Ccee--ec
Confidence 34456788999999999985 56654 3 68899999999999998533 23 8889999999999975 4333 28
Q ss_pred cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (469)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (469)
..+++|++|+++++. +... .+..+++|++|++++|.++.. .+..+++|++|++++|...... .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCc-CCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999864 4433 378899999999999988874 3778899999999998443322 477889999
Q ss_pred EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCC
Q 012186 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311 (469)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (469)
.|++++|.+.... +..+++|+.|++++|.+++. .+..+++|+.|++++|.+...+ +..+++|+.|++++|.
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc
Confidence 9999999887742 67889999999999988864 3778889999999999887632 7788899999999998
Q ss_pred CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH-
Q 012186 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA- 390 (469)
Q Consensus 312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 390 (469)
+.... ++.+++|+.|.++.+ +|+.|++++|.+.+..+ ...+++|+.|++++|...+.+|.
T Consensus 245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence 87653 456677777766554 23344444443332211 23445555555555543332221
Q ss_pred -------HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186 391 -------YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 391 -------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
.+..+++|+.|++++|++++. .+..+++|+.|++++| .+.+ +++|+.|++++|.+..
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB--------CTTGGGSSGGGTSEEE
T ss_pred CCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC--------ccccccccccCCcEEe
Confidence 123347888899999988885 3778889999999998 6665 4677788888877653
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.6e-28 Score=223.97 Aligned_cols=269 Identities=19% Similarity=0.199 Sum_probs=161.0
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
++++.|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.... ..+ .++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~--~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKM--PKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC-SSC--CTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC-hhh--cccccEEEC
Confidence 34555555555555444444555555555555555554444445555555555555555544321 111 245666666
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCCCCCh--HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 337 (469)
++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..... ...++|+.|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCC
Confidence 6666555545555566666666666665532 223345556666666666665554221 12267777777777777
Q ss_pred chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHh
Q 012186 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417 (469)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 417 (469)
...+..+..+++|+.|++++|.++...+..+..+++|++|++++|+++. +|.++..+++|+.|++++|.+++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 6666667777777777777777776655566777778888888777774 455667777888888888877776555543
Q ss_pred c------CCCCCeeeccCCCCCCh--hHHHHHHhCcccccccccCCC
Q 012186 418 D------LSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 418 ~------~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 456 (469)
. .+.++.|++++|+ +.. ..+..+..+++++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 2 3678888888884 332 344567778888888888774
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.2e-29 Score=238.69 Aligned_cols=303 Identities=18% Similarity=0.115 Sum_probs=175.6
Q ss_pred CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCC-CCccEEEccCCCCCChhhhhcccCCCCCCE
Q 012186 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (469)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 184 (469)
++|++|++++|.+.. .|. .+++|++|++++|. +... ... ++|++|++++|. +.. .+ .++.+++|++
T Consensus 91 ~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~-l~~l----~~~~~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNN-LKAL----SDLPPLLEYLGVSNNQ-LEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSC-CSCC----CSCCTTCCEEECCSSC-CSS-CC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCc-cCcc----cCCCCCCCEEECcCCC-CCC-Cc-ccCCCCCCCE
Confidence 455666665554321 221 23556666666542 2221 112 567777776643 332 22 4666777777
Q ss_pred EEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC
Q 012186 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (469)
Q Consensus 185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (469)
|++++|.++..+ . ..++|++|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.|++++|.+
T Consensus 158 L~l~~N~l~~lp-~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCSCCC-C---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred EECCCCcCcccC-C---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCCcC
Confidence 777777665421 1 224677777777766653 2 4666777777777777665411 1234677777777776
Q ss_pred chHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh
Q 012186 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (469)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 344 (469)
.. .+ .+..+++|+.|++++|.+.... ..+++|+.|++++|.+.... ..+++|+.|++++|.+.+.. .+
T Consensus 228 ~~-lp-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~--~~ 295 (454)
T 1jl5_A 228 EE-LP-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS--EL 295 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES--CC
T ss_pred Cc-cc-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc--Cc
Confidence 63 23 3667777777777777665421 12467777777777665421 13467888888877766521 11
Q ss_pred hCCCCCcEEEccCCCCCHHHHHHHhcC-CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186 345 AGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (469)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 423 (469)
.++|+.|++++|.++.. ..+ ++|++|++++|++++. |. .+++|+.|++++|.++.. |. .+++|+
T Consensus 296 --~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~l-p~---~l~~L~ 360 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEV-PE---LPQNLK 360 (454)
T ss_dssp --CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCC
T ss_pred --CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCccccc-cc---hhhhcc
Confidence 25788888888877752 234 4888888888888763 32 258889999998888864 33 478899
Q ss_pred eeeccCCCCCCh--hHHHHHHhC-------------cccccccccCCCCCH
Q 012186 424 LLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITS 459 (469)
Q Consensus 424 ~L~l~~~~~l~~--~~~~~l~~l-------------~~L~~L~l~~~~~~~ 459 (469)
+|++++| .+.+ ..|..+..+ ++|+.|++++|+++.
T Consensus 361 ~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 361 QLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EEECCSS-CCSSCCCCCTTCCEEECCC------------------------
T ss_pred EEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 9999998 6666 445555555 788999999988875
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2e-27 Score=218.11 Aligned_cols=290 Identities=16% Similarity=0.154 Sum_probs=154.7
Q ss_pred CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (469)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (469)
++++++++++... ..|..+ .+++++|++++|......+..+.++++|++|+++++. +....+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc--ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEE
Confidence 5666666655431 122211 2456666666653222222345555566666665532 3333344555555555555
Q ss_pred ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCch
Q 012186 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266 (469)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (469)
+++|.++..+... .++|++|++++|.+....+..+..+++|+.|++++|.+... +
T Consensus 107 Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~ 161 (330)
T 1xku_A 107 LSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------G 161 (330)
T ss_dssp CCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------G
T ss_pred CCCCcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------C
Confidence 5555554322111 14455555555555444444444555555555555444321 0
Q ss_pred HHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhC
Q 012186 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346 (469)
Q Consensus 267 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 346 (469)
..+..+..+++|+.|++++|.+..... . ..++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 122334445555555555554432111 1 1245666666666655555555666666666666666666555555666
Q ss_pred CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc------CCCCCeeeeCCCCCCH--HHHHHHhc
Q 012186 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTD--AGVKHIKD 418 (469)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~l~~ 418 (469)
+++|+.|++++|.++.. +..+..+++|++|++++|++++..+..+.. .+.++.|++++|.+.. ..|..+..
T Consensus 239 l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 66777777777666643 334556677777777777776655544422 3677788888887754 44556777
Q ss_pred CCCCCeeeccCC
Q 012186 419 LSSLTLLNLSQN 430 (469)
Q Consensus 419 ~~~L~~L~l~~~ 430 (469)
+.+++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 788888888877
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.4e-28 Score=224.34 Aligned_cols=288 Identities=18% Similarity=0.199 Sum_probs=152.0
Q ss_pred CCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeec
Q 012186 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (469)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (469)
+++.++++++. +...+..+ .++|++|+++++. +....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45666665542 22222222 2455555555532 33333344555555555555555555444444555555555555
Q ss_pred cCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh-
Q 012186 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD- 290 (469)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 290 (469)
++|.+... +..+. ++|++|++++|.+....+.. +..+++|+.|++++|.+..
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGV------------------------FSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGG------------------------GSSCSSCCEEECCSCCCBGG
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhH------------------------hCCCccCCEEECCCCccccC
Confidence 55544432 11111 44455555444444333333 4444455555555444432
Q ss_pred -HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHh
Q 012186 291 -EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (469)
Q Consensus 291 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (469)
..+..+..+ +|+.|++++|.+..... ...++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 112223333 55555555554443211 1125666666666666655555566666777777777666665555566
Q ss_pred cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhc------CCCCCeeeccCCCCCC--hhHHHHH
Q 012186 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI 441 (469)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~--~~~~~~l 441 (469)
.+++|++|++++|+++. +|..+..+++|+.|++++|.++...+..+.. .+.|+.|++++|+ +. ...+..+
T Consensus 239 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-ccccccCcccc
Confidence 67777777777776664 3455666777777777777777665544433 3567778888874 43 3445566
Q ss_pred HhCcccccccccCCC
Q 012186 442 SGLTGLVSLNVSNSR 456 (469)
Q Consensus 442 ~~l~~L~~L~l~~~~ 456 (469)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 677788888877764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.5e-27 Score=218.94 Aligned_cols=287 Identities=19% Similarity=0.166 Sum_probs=184.4
Q ss_pred CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (469)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (469)
++++++++++.. ...|..+ .++|++|++++|......+..+.++++|++|++++| .+....+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEE
Confidence 689999998875 2334333 369999999998644444567999999999999995 46666678899999999999
Q ss_pred ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCCh--hHHHHhhcCCCccEEEccCCCC
Q 012186 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEI 264 (469)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 264 (469)
+++|.++..+.... ++|++|++++|.+....+..+..+++|+.|++.+|.+.. ..+..+..+ +|+.|++++|.+
T Consensus 109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 99998885443322 799999999999988766778999999999999998864 233444455 777777777766
Q ss_pred chHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh
Q 012186 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (469)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 344 (469)
+.. +..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus 185 ~~l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------------- 240 (332)
T 2ft3_A 185 TGI-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--------------------- 240 (332)
T ss_dssp SSC-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC---------------------
T ss_pred Ccc-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC---------------------
Confidence 542 1111 1456666666665554433344455555555555554444333334444
Q ss_pred hCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc------CCCCCeeeeCCCCCC--HHHHHHH
Q 012186 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT--DAGVKHI 416 (469)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l 416 (469)
++|+.|++++|.++.. +..+..+++|++|++++|++++..+..+.. .+.|+.|++++|.+. +..+..+
T Consensus 241 ---~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 241 ---PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp ---TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred ---CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 4555555554444432 223445555555555555555443333322 345666666666665 4445556
Q ss_pred hcCCCCCeeeccCC
Q 012186 417 KDLSSLTLLNLSQN 430 (469)
Q Consensus 417 ~~~~~L~~L~l~~~ 430 (469)
..+++|+.+++++|
T Consensus 317 ~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 317 RCVTDRLAIQFGNY 330 (332)
T ss_dssp TTBCCSTTEEC---
T ss_pred cccchhhhhhcccc
Confidence 66777777777766
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.3e-29 Score=227.44 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=152.4
Q ss_pred CCCCEEEecccccCh--hhhhhccCCCCCCeeeccC-CCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccE
Q 012186 180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 256 (469)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888876 5667788888888888885 6666656777788888888888888877666667777888888
Q ss_pred EEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCC-CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCC
Q 012186 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (469)
Q Consensus 257 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 335 (469)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888777765566677777777777777776644455566665 666666666655544444455444 6666666655
Q ss_pred CCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415 (469)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (469)
+....+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++..|.++..+++|+.|++++|.+++..|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 5544444455555555555555555433221 334444555555544444444444444444444444444444333322
Q ss_pred HhcCCCCCeeeccCC
Q 012186 416 IKDLSSLTLLNLSQN 430 (469)
Q Consensus 416 l~~~~~L~~L~l~~~ 430 (469)
..+++|+.+++++|
T Consensus 288 -~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 288 -GNLQRFDVSAYANN 301 (313)
T ss_dssp -TTGGGSCGGGTCSS
T ss_pred -ccccccChHHhcCC
Confidence 33344444444444
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=7.6e-29 Score=225.11 Aligned_cols=248 Identities=16% Similarity=0.176 Sum_probs=137.0
Q ss_pred CCCeeeccCCCCch--hhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (469)
Q Consensus 205 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 281 (469)
+++.|+++++.+.. ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45556666655554 3445555566666666653 55444444555556666666666655554444555555666666
Q ss_pred ecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCC-CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (469)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (469)
++++|.+....+..+..+++|++|++++|.+....+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6665555433344455556666666666655544444555554 566666666555544444555544 66666666555
Q ss_pred CHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHH
Q 012186 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440 (469)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~ 440 (469)
+...+..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..|..+..+++|++|++++| .+++..|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~ 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQG 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCCS
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCCC
Confidence 544444555556666666666655544333 445556666666666655555555555666666666666 444444433
Q ss_pred HHhCcccccccccCCC
Q 012186 441 ISGLTGLVSLNVSNSR 456 (469)
Q Consensus 441 l~~l~~L~~L~l~~~~ 456 (469)
..+++|+.+++++|+
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 455566666666554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=216.71 Aligned_cols=251 Identities=23% Similarity=0.195 Sum_probs=151.5
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 46777777777777665556677777777777777776655556667777777777777766655555666777777777
Q ss_pred cCCCCchHHH-HHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186 260 GFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (469)
Q Consensus 260 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 337 (469)
++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 7766654322 24556666777776666 344433444556666666666666665555555666666666666666665
Q ss_pred chHHHhhhCCCCCcEEEccCCCCCHHHHH---HHhcCCCCCEeecCCCCCChh----HHHHhHcCCCCCeeeeCCCCCCH
Q 012186 338 DGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTD 410 (469)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 410 (469)
......+..+++|+.|++++|.++...+. .....+.++.+++.++.+.+. +|.++..+++|+.|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 54444444556666666666665543221 122345556666666655542 34455566666666666666664
Q ss_pred HHHHHHhcCCCCCeeeccCC
Q 012186 411 AGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 411 ~~~~~l~~~~~L~~L~l~~~ 430 (469)
..+..+..+++|++|++++|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSS
T ss_pred cCHHHHhcCCCCCEEEeeCC
Confidence 43323455666666666666
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.8e-25 Score=209.96 Aligned_cols=341 Identities=17% Similarity=0.111 Sum_probs=200.8
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCC-CCCCE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK 135 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~ 135 (469)
.++++|+++++.+++ +|. -.++|++|++++| .++. .+. .+++|++|++++|.+.. +... ++|++
T Consensus 71 ~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n-~l~~-lp~---~~~~L~~L~l~~n~l~~------l~~~~~~L~~ 135 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPE---LPPHLESLVASCN-SLTE-LPE---LPQSLKSLLVDNNNLKA------LSDLPPLLEY 135 (454)
T ss_dssp HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS-CCSS-CCC---CCTTCCEEECCSSCCSC------CCSCCTTCCE
T ss_pred cCCCEEEecCCcccc-CCC---CcCCCCEEEccCC-cCCc-ccc---ccCCCcEEECCCCccCc------ccCCCCCCCE
Confidence 356788888877765 222 2367888888774 4444 222 24678888888876422 1122 57888
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (469)
|++++|. +...+ .+..+++|++|+++++. +.. .+. ..++|++|++++|.++... .+..+++|++|++++|.
T Consensus 136 L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~-lp~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 136 LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKK-LPD---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred EECcCCC-CCCCc-ccCCCCCCCEEECCCCc-Ccc-cCC---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc
Confidence 8888864 33333 57788888888888754 332 111 2357888888888777632 57778888888888887
Q ss_pred CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (469)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 295 (469)
+... +. ..++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+. + ...++|+.|++++|.+....
T Consensus 207 l~~l-~~---~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~l~~N~l~~l~--- 273 (454)
T 1jl5_A 207 LKKL-PD---LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP--- 273 (454)
T ss_dssp CSSC-CC---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC---
T ss_pred CCcC-CC---CcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcc-c---ccccccCEEECCCCcccccC---
Confidence 6652 11 23578888888887763 33 367788888888888877642 1 12467888888888765421
Q ss_pred hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCC-CCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGL 374 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (469)
..+++|+.|++++|.+.... ...++|+.|++++|.+... ..+ ++|+.|++++|.+++... .+++|
T Consensus 274 -~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L 339 (454)
T 1jl5_A 274 -ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPA----LPPRL 339 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred -cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccccc----cCCcC
Confidence 12467888888888766521 1236788888888877652 233 478888888887775321 35778
Q ss_pred CEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCH--HHHHHHhcC-------------CCCCeeeccCCCCCCh--hH
Q 012186 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDL-------------SSLTLLNLSQNCNLTD--KT 437 (469)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~l~~--~~ 437 (469)
++|++++|.++... . .+++|+.|++++|.+++ ..|.++..+ ++|++|++++| .+.+ ..
T Consensus 340 ~~L~L~~N~l~~lp-~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~i 414 (454)
T 1jl5_A 340 ERLIASFNHLAEVP-E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDI 414 (454)
T ss_dssp CEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred CEEECCCCcccccc-c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccccc
Confidence 88888888777533 2 36788888888888777 445555555 78999999999 5655 22
Q ss_pred HHHHHhCcccccccccCCCCCH
Q 012186 438 LELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 438 ~~~l~~l~~L~~L~l~~~~~~~ 459 (469)
| ++++.|.+.+|.+..
T Consensus 415 P------~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 415 P------ESVEDLRMNSERVVD 430 (454)
T ss_dssp ----------------------
T ss_pred h------hhHhheeCcCcccCC
Confidence 2 456777777776544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=208.33 Aligned_cols=278 Identities=19% Similarity=0.166 Sum_probs=159.1
Q ss_pred CCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCee
Q 012186 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (469)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 209 (469)
|+.....+.+++ .+...|..+. ++|++|+++++. +.......+..+++|++|++++|.++...+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444444555443 2333333222 466666666633 444444456666666666666666665555556666666666
Q ss_pred eccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCccEEEccCCC-CchHHHHHhhCCCCCCEEecCCCC
Q 012186 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG 287 (469)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 287 (469)
++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 666666666555556666666666666666654332 245566666666666652 443334455666666666666666
Q ss_pred CChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh---hCCCCCcEEEccCCCCCHH-
Q 012186 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITDT- 363 (469)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~- 363 (469)
+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+ ...+.++.+++.++.+...
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 655445556666666666666666655444444556666666666665554322221 2345566666666666553
Q ss_pred ---HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 364 ---GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 364 ---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
.+..+..+++|++|++++|+++......+..+++|+.|++++|.+...
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 233455666666666666666654333345666666666666666543
No 55
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.7e-23 Score=196.16 Aligned_cols=256 Identities=18% Similarity=0.180 Sum_probs=162.9
Q ss_pred hhccCCCCCCeeeccCCCCchhhHHh----hhcCCCCcEEECCCCCCC---hhHHH-------HhhcCCCccEEEccCCC
Q 012186 198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE 263 (469)
Q Consensus 198 ~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~ 263 (469)
..+..+++|++|++++|.+....+.. +..+++|++|++++|.+. ...+. .+..+++|+.|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45567788888888888877654433 557888888888886433 22222 23577888888888888
Q ss_pred Cch----HHHHHhhCCCCCCEEecCCCCCChHHHHHhhC----C---------CCCCEEeccCCCCChhhH----HHhhC
Q 012186 264 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG 322 (469)
Q Consensus 264 ~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~ 322 (469)
+.. ..+..+..+++|+.|++++|.++...+..+.. + ++|++|++++|.+..... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 776 35566777788888888888776544433332 2 677777777777763322 24556
Q ss_pred CCCCcEEecccCCCCchH----HH-hhhCCCCCcEEEccCCCCC----HHHHHHHhcCCCCCEeecCCCCCChh----HH
Q 012186 323 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQIT----DTGLAALTSLTGLTHLDLFGARITDS----GA 389 (469)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~ 389 (469)
+++|+.|++++|.+.... .. .+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+++. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 777777777777776432 22 4556677777777777775 33344556677777777777777765 23
Q ss_pred HHhHc--CCCCCeeeeCCCCCCH----HHHHHH-hcCCCCCeeeccCCCCCChhHH--HHH-HhCcccccccccC
Q 012186 390 AYLRN--FKNLRSLEICGGGLTD----AGVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSN 454 (469)
Q Consensus 390 ~~~~~--~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~l~~~~~--~~l-~~l~~L~~L~l~~ 454 (469)
..+.. +++|+.|++++|.++. ..|..+ .++++|++|++++| .++...+ ..+ ..+++++.+++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 44433 6777777777777776 345555 45677777777777 4554442 222 2345555454443
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3e-26 Score=208.58 Aligned_cols=251 Identities=17% Similarity=0.186 Sum_probs=154.2
Q ss_pred cccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchH
Q 012186 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267 (469)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (469)
+.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~- 94 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE- 94 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-
Confidence 3333433333334445566666666666655555556666666666666666544332 5556666666666666553
Q ss_pred HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh-C
Q 012186 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-G 346 (469)
Q Consensus 268 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~ 346 (469)
+...++|+.|++++|.+..... ..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+. .
T Consensus 95 ----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 95 ----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp ----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 2233566666666666554321 2356677777777766665555566667777777777776665555443 5
Q ss_pred CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeee
Q 012186 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426 (469)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 426 (469)
+++|+.|++++|.++.. .....+++|++|++++|.+++..+ .+..+++|+.|++++|.++.. |..+..+++|+.|+
T Consensus 168 l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFD 243 (317)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEE
T ss_pred cCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCCCEEE
Confidence 67777777777777654 222246777777777777776433 366677777777777777754 44566677777777
Q ss_pred ccCCCCCC-hhHHHHHHhCccccccccc
Q 012186 427 LSQNCNLT-DKTLELISGLTGLVSLNVS 453 (469)
Q Consensus 427 l~~~~~l~-~~~~~~l~~l~~L~~L~l~ 453 (469)
+++| .+. ...+..+..+++|+.|+++
T Consensus 244 l~~N-~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 244 LRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTC-CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCC-CccCcCHHHHHhccccceEEECC
Confidence 7777 444 5566667777777777765
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1e-25 Score=215.70 Aligned_cols=245 Identities=19% Similarity=0.186 Sum_probs=196.2
Q ss_pred CCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccC
Q 012186 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (469)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (469)
...++..+..++..+. . -.+++++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 56 ~~~v~c~~~~l~~iP~-~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-G--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCC-C--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4566666666664332 2 236899999999998887778888999999999999998887777888899999999999
Q ss_pred CCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (469)
Q Consensus 262 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 340 (469)
|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++.++ .+.......+..+++|+.|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9888766666788899999999999887666667788899999999884 45444445677888899999988887764
Q ss_pred HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420 (469)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 420 (469)
..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..++
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2466778888888888888887777788888888888888888887777788888888888888888877666677788
Q ss_pred CCCeeeccCCC
Q 012186 421 SLTLLNLSQNC 431 (469)
Q Consensus 421 ~L~~L~l~~~~ 431 (469)
+|+.|++++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 88888888885
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.1e-25 Score=214.86 Aligned_cols=245 Identities=19% Similarity=0.212 Sum_probs=201.1
Q ss_pred CCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccC
Q 012186 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (469)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (469)
.+.++..+..++..+. .+ .++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4566666666664432 22 36789999999998887778889999999999999999887778888999999999999
Q ss_pred CCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (469)
Q Consensus 262 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 340 (469)
|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++.++ .+.......+..+++|+.|++++|.+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 9988766667888999999999999888766667888999999999885 455444556788899999999999877543
Q ss_pred HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420 (469)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 420 (469)
.+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...+..+..++
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 466788899999999988887777888889999999999988888788888889999999999988887777777888
Q ss_pred CCCeeeccCCC
Q 012186 421 SLTLLNLSQNC 431 (469)
Q Consensus 421 ~L~~L~l~~~~ 431 (469)
+|+.|++++|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 89999999885
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1e-25 Score=202.22 Aligned_cols=206 Identities=20% Similarity=0.234 Sum_probs=107.4
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC-CChhHHHHhhcCCCccEEE
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 258 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 258 (469)
++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 466666666666665555555666666666666665555444555555666666666554 4443344455555555555
Q ss_pred ccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (469)
Q Consensus 259 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 338 (469)
+++|.+....+..+..+++|++|++++|.+.. .....++.+++|+.|++++|.+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA------------------------LPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccc------------------------cCHhHhccCCCccEEECCCCcccc
Confidence 55555544333344445555555555554443 333333444444444444444444
Q ss_pred hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 33333444455555555555554444444445555555555555555544445555555555555555443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=209.00 Aligned_cols=246 Identities=19% Similarity=0.202 Sum_probs=211.1
Q ss_pred ccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECC
Q 012186 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (469)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (469)
.+.++..+ ..+.. .+..+ .++++.|++++|.+.......+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 45 ~~~v~c~~-~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVR-KNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCS-CCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCC-CCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 44555554 22332 22333 3789999999999998888889999999999999999988877889999999999999
Q ss_pred CCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChh
Q 012186 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (469)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (469)
+|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99998776677889999999999999998766667889999999999985 45544455688899999999999988764
Q ss_pred hHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcC
Q 012186 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (469)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (469)
. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 47789999999999999998888889999999999999999998878888899999999999999999888888899
Q ss_pred CCCCeeeeCCCCC
Q 012186 396 KNLRSLEICGGGL 408 (469)
Q Consensus 396 ~~L~~L~l~~~~~ 408 (469)
++|+.|++++|.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 9999999999765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=6.9e-25 Score=209.98 Aligned_cols=227 Identities=21% Similarity=0.213 Sum_probs=203.5
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
+++++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999999888888999999999999999998887788999999999999999998877777889999999999
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 338 (469)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence 999998766667889999999999985 455444556788999999999999887643 57789999999999999999
Q ss_pred hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCC
Q 012186 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (469)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (469)
..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 8888999999999999999999988788888999999999999999988878888999999999999864
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6.5e-25 Score=196.92 Aligned_cols=223 Identities=20% Similarity=0.208 Sum_probs=183.2
Q ss_pred CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (469)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 286 (469)
++++.+++.+... |. ...++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5677777766654 22 23478999999999988877677888999999999999888766777888899999999988
Q ss_pred C-CChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186 287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (469)
Q Consensus 287 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (469)
. +....+..+..+++|++|++.+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 666556677888899999999998887767778888999999999998887766677888899999999988887766
Q ss_pred HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCC
Q 012186 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432 (469)
Q Consensus 366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 432 (469)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 6677888999999999988888788888888999999999988888777788888999999998853
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2e-25 Score=202.58 Aligned_cols=228 Identities=20% Similarity=0.192 Sum_probs=132.7
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhh--HHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (469)
++|++|+++++.++......+..+++|++|++++|.+.... +..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 57777888777777655555677777777777777665321 3344556777777777776653 23335566777777
Q ss_pred EccCCCCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh-hhHHHhhCCCCCcEEecccCC
Q 012186 258 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG 335 (469)
Q Consensus 258 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 335 (469)
++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777766654332 345566666666666666554444445556666666666665443 233344555566666666655
Q ss_pred CCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCC-CCCeeeeCCCCC
Q 012186 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGL 408 (469)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 408 (469)
+.+..+..+..+++|+.|++++|.++......+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5554444555555555555555555544333444555555555555555554444444442 555555555544
No 64
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.8e-22 Score=189.28 Aligned_cols=237 Identities=16% Similarity=0.186 Sum_probs=123.4
Q ss_pred ccCCCCCCEEEecccccChhhhhh----ccCCCCCCeeeccCCCCc---hhhHH-------hhhcCCCCcEEECCCCCCC
Q 012186 176 LSGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVT---AACLD-------SLSALGSLFYLNLNRCQLS 241 (469)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~~~ 241 (469)
+..+++|++|++++|.+....... +..+++|++|++++|.+. ...|. .+..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 344556666666666555443322 445566666666654222 11122 2245566666666666655
Q ss_pred h----hHHHHhhcCCCccEEEccCCCCchHHHHHh----hCC---------CCCCEEecCCCCCChHHH----HHhhCCC
Q 012186 242 D----DGCEKFSKIGSLKVLNLGFNEITDECLVHL----KGL---------TNLESLNLDSCGIGDEGL----VNLTGLC 300 (469)
Q Consensus 242 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~l~~~~~~~~~~----~~~~~~~ 300 (469)
. ..+..+..+++|+.|++++|.+....+..+ ..+ ++|++|++++|.++.... ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 233445556666666666666543322222 222 566666666665542221 2344555
Q ss_pred CCCEEeccCCCCChhh----HH-HhhCCCCCcEEecccCCCC----chHHHhhhCCCCCcEEEccCCCCCHHHH----HH
Q 012186 301 NLKCLELSDTQVGSSG----LR-HLSGLTNLESINLSFTGIS----DGSLRKLAGLSSLKSLNLDARQITDTGL----AA 367 (469)
Q Consensus 301 ~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~ 367 (469)
+|++|++++|.+.... .. .+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.++..+. ..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 6666666666555321 11 3445566666666666654 2233444555666666666666655422 22
Q ss_pred Hhc--CCCCCEeecCCCCCCh----hHHHHh-HcCCCCCeeeeCCCCCCHHH
Q 012186 368 LTS--LTGLTHLDLFGARITD----SGAAYL-RNFKNLRSLEICGGGLTDAG 412 (469)
Q Consensus 368 l~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 412 (469)
+.. +++|++|++++|.+++ .++..+ .++++|+.|++++|.+++..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 222 5666666666666665 244444 44566666666666665544
No 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-23 Score=193.28 Aligned_cols=237 Identities=18% Similarity=0.185 Sum_probs=146.5
Q ss_pred CCcHHHHHHHHHHHHhccCCCHHhHHhhccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcC
Q 012186 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (469)
Q Consensus 1 ~~~~e~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 80 (469)
.+|+|+...+|..+-. .+ +..+..++..|...... +..++.++++++.+.+ ..+.++
T Consensus 11 ~LP~eil~~If~~L~~------~d-------------~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCL------PE-------------LLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCH------HH-------------HHHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred hCCHHHHHHHHHhCCH------HH-------------HHHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence 4799999988875421 11 11234567888876653 6679999999988873 455666
Q ss_pred --CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (469)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (469)
++++.|+++++ .+....+ .+..+++|++|++++|.+.....+..+..+++|++|++++|......+..+..+++|+
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhccceEEEcCCc-cccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 89999999984 4555433 3567899999999999753344778888899999999988754434555667777777
Q ss_pred EEEccCCCCCChh-hhhcccCCCCCCEEEeccc-ccChh-hhhhccCCC-CCCeeeccCC--CCc-hhhHHhhhcCCCCc
Q 012186 159 SLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGC--PVT-AACLDSLSALGSLF 231 (469)
Q Consensus 159 ~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~~~~~~~L~ 231 (469)
+|++++|..+.+. .+..+..+++|++|++++| .+++. ....+..++ +|++|++++| .+. ...+..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 7777776445542 2333455666666666666 55543 233344555 5555555555 233 22233344455555
Q ss_pred EEECCCCC-CChhHHHHhhcCCCccEEEccCC
Q 012186 232 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262 (469)
Q Consensus 232 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 262 (469)
+|++++|. +++..+..+..+++|+.|++++|
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555544 33333334444444444444444
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.5e-22 Score=186.23 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=121.4
Q ss_pred CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchH-HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEe
Q 012186 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (469)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (469)
++++.+++.++.+....+. +..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555544444332221 23445555555555555433 444455555666666665555555555555556666666
Q ss_pred ccCC-CCChh-hHHHhhCCCCCcEEecccC-CCCch-HHHhhhCCC-CCcEEEccCC--CCC-HHHHHHHhcCCCCCEee
Q 012186 307 LSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLDAR--QIT-DTGLAALTSLTGLTHLD 378 (469)
Q Consensus 307 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~ 378 (469)
+++| .+... .+..+..+++|++|++++| .+++. .+..+..++ +|+.|++++| .++ ...+..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6655 44432 2333455666666666666 55543 234455566 6666666665 444 22234445666666666
Q ss_pred cCCCC-CChhHHHHhHcCCCCCeeeeCCC-CCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 379 LFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 379 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
+++|. +++..+..+..+++|+.|++++| .+.......+..+++|++|++++| ++......+. .+++.|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHH--hhCcceEEeccc
Confidence 66666 55555556666666666666666 344433334556666666666666 3333322222 234455566666
Q ss_pred CCH
Q 012186 457 ITS 459 (469)
Q Consensus 457 ~~~ 459 (469)
++.
T Consensus 305 l~~ 307 (336)
T 2ast_B 305 FTT 307 (336)
T ss_dssp SCC
T ss_pred Ccc
Confidence 654
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-24 Score=196.01 Aligned_cols=249 Identities=23% Similarity=0.244 Sum_probs=163.8
Q ss_pred cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcH-HHHHHHhCCCCCCEEec
Q 012186 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDL 138 (469)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l 138 (469)
+.++.+++.++. +|..+ .++|++|++++| .++......+.++++|++|++++|.+... ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 467777766653 33322 367888888874 56655555677888888888888764211 11345567888888888
Q ss_pred ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCch
Q 012186 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (469)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (469)
++|. +...+..+..+++|++|+++++..........+..+++|++|++++|.+.......+..+++|++|++++|.+..
T Consensus 86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 8864 444555677788888888887543222222456677888888888777776666667777788888888777654
Q ss_pred -hhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh
Q 012186 219 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297 (469)
Q Consensus 219 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 297 (469)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 3455666777777777777777665556666677777777777766654444556666777777777766554444455
Q ss_pred CCC-CCCEEeccCCCCC
Q 012186 298 GLC-NLKCLELSDTQVG 313 (469)
Q Consensus 298 ~~~-~L~~L~l~~~~~~ 313 (469)
.++ +|+.|++++|++.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 553 6666666666543
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.6e-25 Score=201.99 Aligned_cols=235 Identities=22% Similarity=0.224 Sum_probs=142.7
Q ss_pred CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEe
Q 012186 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (469)
Q Consensus 203 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 282 (469)
.++++.|+++++.+... +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45566666666665533 444555666666666666655 34445556666666666666655 3344555566666666
Q ss_pred cCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH
Q 012186 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (469)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (469)
+++|......+..+.. ..+. ..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.++.
T Consensus 157 L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 6654332222211111 0000 01234667777777777665 334456667777777777777665
Q ss_pred HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH
Q 012186 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442 (469)
Q Consensus 363 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~ 442 (469)
. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++| .+.+..|+.+.
T Consensus 221 l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~iP~~l~ 298 (328)
T 4fcg_A 221 L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-VNLSRLPSLIA 298 (328)
T ss_dssp C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC-TTCCCCCGGGG
T ss_pred C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC-CchhhccHHHh
Confidence 4 234666777777777777777666666777777777777777776666666777777777777777 55555666677
Q ss_pred hCcccccccccCCCCC
Q 012186 443 GLTGLVSLNVSNSRIT 458 (469)
Q Consensus 443 ~l~~L~~L~l~~~~~~ 458 (469)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 7777777777665443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.2e-25 Score=201.05 Aligned_cols=239 Identities=20% Similarity=0.209 Sum_probs=135.3
Q ss_pred CCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (469)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (469)
.+++|++|++++|.++...+..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ...++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEE
Confidence 33445555555554444444444455555555555554443222 44455555555555544321 123555555
Q ss_pred EccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHh-hCCCCCcEEecccCCC
Q 012186 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGI 336 (469)
Q Consensus 258 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 336 (469)
++++|.+.... ...+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 55555554322 1234556666666665554444445555666666666666555444433 3566666666666666
Q ss_pred CchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC-HHHHHH
Q 012186 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKH 415 (469)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~ 415 (469)
.... ....+++|+.|++++|.++...+. +..+++|++|++++|.++. +|..+..+++|+.|++++|.+. +..+.+
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred cccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 5441 222366777777777777665333 6667777777777777775 3455666777777777777777 556666
Q ss_pred HhcCCCCCeeeccCC
Q 012186 416 IKDLSSLTLLNLSQN 430 (469)
Q Consensus 416 l~~~~~L~~L~l~~~ 430 (469)
+..+++|+.|++++|
T Consensus 258 ~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 258 FSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhccccceEEECCCc
Confidence 777777777777655
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7.3e-26 Score=205.59 Aligned_cols=248 Identities=21% Similarity=0.183 Sum_probs=169.8
Q ss_pred CCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCCh-hHHHH-------hhcCCCccEEEccCCCCchHHHHHh-
Q 012186 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEK-------FSKIGSLKVLNLGFNEITDECLVHL- 272 (469)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~- 272 (469)
..++|+.++++++.+ . .|..+... ++.|+++++.+.. ..+.. +..+++|++|++++|.+++..+..+
T Consensus 41 ~~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555555555555 2 22222222 5555555554421 11111 1256777777777777765444443
Q ss_pred -hCCCCCCEEecCCCCCChHHHHHhhCC-----CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch--HHHhh
Q 012186 273 -KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKL 344 (469)
Q Consensus 273 -~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~ 344 (469)
..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.+++|++|++++|.+... .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6677777777777766654 3333333 7888888888887776667777888888888888876654 23344
Q ss_pred --hCCCCCcEEEccCCCCCH---HHHHHHhcCCCCCEeecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHHHHhc
Q 012186 345 --AGLSSLKSLNLDARQITD---TGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKD 418 (469)
Q Consensus 345 --~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 418 (469)
..+++|+.|++++|.++. .....+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++.. |..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc-
Confidence 678899999999998883 333455678999999999999888653 3455678999999999999844 54443
Q ss_pred CCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHH
Q 012186 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (469)
Q Consensus 419 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 460 (469)
++|++|++++| .++.. |. +..+++|+.|++++|++++.
T Consensus 274 -~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 78999999999 77776 33 78899999999999998864
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8e-24 Score=193.10 Aligned_cols=223 Identities=20% Similarity=0.201 Sum_probs=135.6
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
..+++++|+++++.++ .+|..+.++++|++|++++| .++ ..+..+.++++|++|++++|.+. .+|..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 4578999999998887 56777888999999999884 565 55677888899999999988753 5577788888899
Q ss_pred EEecccccccccccccccC---------CCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCC
Q 012186 135 KLDLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 205 (469)
+|++++|......+..+.. +++|++|++++|. +. ..+..+..+++|++|++++|.+... +..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence 9988887666555544432 5555555555532 22 2333455555555555555555532 223455555
Q ss_pred CCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCC
Q 012186 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (469)
Q Consensus 206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 285 (469)
|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++++.+.+..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55555555544444444445555555555555544444444444455555555555444444444444555555554443
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.6e-23 Score=191.93 Aligned_cols=251 Identities=15% Similarity=0.194 Sum_probs=145.7
Q ss_pred EEecccccChhhhhhccCCCCCCeeeccCCCCchhhH----HhhhcCC-CCcEEECCCCCCChhHHHHhhcC-----CCc
Q 012186 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GSL 254 (469)
Q Consensus 185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 254 (469)
++++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677776655555666668888888887766554 5666677 78888887777766555545443 777
Q ss_pred cEEEccCCCCchHHHH----HhhCC-CCCCEEecCCCCCChHHHHHh----hC-CCCCCEEeccCCCCChhhHH----Hh
Q 012186 255 KVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEGLVNL----TG-LCNLKCLELSDTQVGSSGLR----HL 320 (469)
Q Consensus 255 ~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~~ 320 (469)
+.|++++|.+++..+. .+..+ ++|+.|++++|.++......+ .. .++|++|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777776654333 23344 677777777776655443332 23 24777777777766643322 23
Q ss_pred hCCC-CCcEEecccCCCCchHHHhh----hCC-CCCcEEEccCCCCCHHH----HHHHhc-CCCCCEeecCCCCCChhHH
Q 012186 321 SGLT-NLESINLSFTGISDGSLRKL----AGL-SSLKSLNLDARQITDTG----LAALTS-LTGLTHLDLFGARITDSGA 389 (469)
Q Consensus 321 ~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~~~~~~~ 389 (469)
..++ +|++|++++|.+++..+..+ ..+ ++|+.|++++|.++..+ +..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3444 67777777776655444333 334 36777777766666522 223333 3466666666666665443
Q ss_pred HH----hHcCCCCCeeeeCCCC---CCHHHHH----HHhcCCCCCeeeccCCCCCChh
Q 012186 390 AY----LRNFKNLRSLEICGGG---LTDAGVK----HIKDLSSLTLLNLSQNCNLTDK 436 (469)
Q Consensus 390 ~~----~~~~~~L~~L~l~~~~---~~~~~~~----~l~~~~~L~~L~l~~~~~l~~~ 436 (469)
.. +..+++|+.|++++|. ++..... .+..+++|+.|++++| .+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 22 2445666666666665 3322221 2234455666666666 44443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.8e-24 Score=205.07 Aligned_cols=235 Identities=17% Similarity=0.190 Sum_probs=128.2
Q ss_pred CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (469)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 284 (469)
+|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++ +...++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEEECc
Confidence 34444444444444333344444444444444444433222 4444555555555554432 1122455555555
Q ss_pred CCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh-CCCCCcEEEccCCCCCHH
Q 012186 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDT 363 (469)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 363 (469)
+|.+....+ ..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+. .+++|+.|++++|.++..
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 555443221 2345566666666665555444555666666666666666655555444 466666666666666654
Q ss_pred HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHh
Q 012186 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443 (469)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~ 443 (469)
. ....+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++. |..+..+++|+.|++++|+......+..+..
T Consensus 185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 1 22246667777777776666433 356667777777777776653 4455666777777777773332455566666
Q ss_pred Cccccccccc
Q 012186 444 LTGLVSLNVS 453 (469)
Q Consensus 444 l~~L~~L~l~ 453 (469)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666663
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.8e-22 Score=187.24 Aligned_cols=251 Identities=20% Similarity=0.219 Sum_probs=152.5
Q ss_pred EccCCCCCChhhhhcccCCCCCCEEEecccccChhhh----hhccCCC-CCCeeeccCCCCchhhHHhhhcC-----CCC
Q 012186 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----AYLKGLQ-KLTLLNLEGCPVTAACLDSLSAL-----GSL 230 (469)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 230 (469)
.+++ +.+....+..+...++|++|++++|.+++... ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 4 ~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4444 23444444444555557777777777766555 5566666 77777777777766545444443 777
Q ss_pred cEEECCCCCCChhHHHH----hhcC-CCccEEEccCCCCchHHHHH----hhC-CCCCCEEecCCCCCChH----HHHHh
Q 012186 231 FYLNLNRCQLSDDGCEK----FSKI-GSLKVLNLGFNEITDECLVH----LKG-LTNLESLNLDSCGIGDE----GLVNL 296 (469)
Q Consensus 231 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~----~~~~~ 296 (469)
++|++++|.+....+.. +..+ ++|+.|++++|.+++..... +.. .++|++|++++|.++.. ....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777766544443 3333 67777777777776544333 333 34777777777766632 23334
Q ss_pred hCCC-CCCEEeccCCCCChhhHHHh----hCC-CCCcEEecccCCCCchHH----HhhhC-CCCCcEEEccCCCCCHHHH
Q 012186 297 TGLC-NLKCLELSDTQVGSSGLRHL----SGL-TNLESINLSFTGISDGSL----RKLAG-LSSLKSLNLDARQITDTGL 365 (469)
Q Consensus 297 ~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~~ 365 (469)
..++ +|++|++++|.+....+..+ ..+ ++|+.|++++|.+.+... ..+.. .++|+.|++++|.++..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 77777777777665554333 344 477777777777766332 23333 3577777777777776444
Q ss_pred HH----HhcCCCCCEeecCCCCCC---hhH----HHHhHcCCCCCeeeeCCCCCCHHH
Q 012186 366 AA----LTSLTGLTHLDLFGARIT---DSG----AAYLRNFKNLRSLEICGGGLTDAG 412 (469)
Q Consensus 366 ~~----l~~~~~L~~L~l~~~~~~---~~~----~~~~~~~~~L~~L~l~~~~~~~~~ 412 (469)
.. +..+++|++|++++|.+. ... +..+..+++|+.|++++|.+....
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 32 245677777777777633 221 123345666777777777776653
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=8.4e-22 Score=193.23 Aligned_cols=270 Identities=21% Similarity=0.121 Sum_probs=213.2
Q ss_pred CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (469)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (469)
.++++|+++++. +...+..+. ++|++|++++|. +.... . .+++|++|++++|.++..+. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLP-A---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCC-C---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCC-C---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 469999999974 445555454 899999999965 44322 2 57899999999999886433 779999999
Q ss_pred ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (469)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 290 (469)
+++|.+..... .+++|+.|++++|.+..... .+++|+.|++++|.++.. + ..+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCCCC
Confidence 99998877432 57899999999998876322 358999999999988752 1 245789999999998876
Q ss_pred HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (469)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 370 (469)
.. ..+++|+.|++++|.+.... ..+++|+.|.+++|.+.... ..+++|+.|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 33 45789999999999877532 24589999999999887533 23588999999999998753 56
Q ss_pred CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcc
Q 012186 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446 (469)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 446 (469)
+++|+.|++++|.++.... .+++|+.|++++|.++.. |..+..+++|+.|++++| .+.+..+..+..+++
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREITS 309 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhccc
Confidence 7899999999999886433 578999999999999955 677889999999999999 788888887776543
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=2.1e-21 Score=190.43 Aligned_cols=268 Identities=15% Similarity=0.079 Sum_probs=213.4
Q ss_pred CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEE
Q 012186 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (469)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (469)
.++++|+++++.+. .+|..+. ++|++|++++|. +...+. .+++|++|++++|. +.... . .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp-~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLP-V---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCC-C---CCTTCCEE
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCC-C---CCCCCCEE
Confidence 46999999998752 4454443 799999999984 444443 67999999999965 44322 2 67999999
Q ss_pred EecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc
Q 012186 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (469)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (469)
++++|.++..+. .+++|++|++++|.+.... . .+++|++|++++|.+.... ..+++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence 999998886433 6789999999999887642 2 3589999999999887532 24678999999999988
Q ss_pred hHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh
Q 012186 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (469)
Q Consensus 266 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (469)
.. + ..+++|+.|++++|.+.... ..+++|+.|++.+|.+.... ..+++|+.|++++|.+.... .
T Consensus 175 ~l-~---~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 175 SL-P---MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred CC-c---ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence 63 2 55789999999999886522 23579999999999877543 24689999999999887643 4
Q ss_pred CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (469)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (469)
.+++|+.|++++|.++..+. .+++|+.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 56899999999999987533 67899999999999995 47789999999999999999999988877543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1e-23 Score=191.47 Aligned_cols=253 Identities=21% Similarity=0.252 Sum_probs=111.2
Q ss_pred hhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEeccccccccc-cccccc-------CCCCccEEEccCCCCCChhhh
Q 012186 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-------GLMKLESLNIKWCNCITDSDM 173 (469)
Q Consensus 102 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~-------~l~~L~~L~l~~~~~~~~~~~ 173 (469)
++..++|++|+++++.+ ..|..+... |++|+++++..... .+..+. .+++|++|+++++. +.+..+
T Consensus 39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence 34556777777777764 334434332 77777776543221 111111 35555555555532 222222
Q ss_pred hcc--cCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC
Q 012186 174 KPL--SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (469)
Q Consensus 174 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (469)
..+ ..+++|++|++++|.+++. +..+..+ .....++|++|++++|.+....+..+..+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 222 4445555555555544433 2222222 00001444444444444444333444444
Q ss_pred CCccEEEccCCCCchH--HHHHh--hCCCCCCEEecCCCCCCh---HHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCC
Q 012186 252 GSLKVLNLGFNEITDE--CLVHL--KGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGL 323 (469)
Q Consensus 252 ~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 323 (469)
++|+.|++++|.+.+. .+..+ ..+++|+.|++++|.+.. .....+..+++|+.|++++|.+....+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544332 12222 445555555555555442 111222344555555555554443221 122334
Q ss_pred CCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (469)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (469)
++|+.|++++|.++. .+..+. ++|+.|++++|+++.. +. +..+++|++|++++|+++
T Consensus 253 ~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 555555555554442 122221 4455555555555443 11 444455555555555444
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.3e-23 Score=199.28 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=127.4
Q ss_pred CCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcE
Q 012186 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (469)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 232 (469)
.+++|++|+++++ .+....+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+... ...++|+.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 3446777777764 3444455566677777777777776654332 66667777777777665542 22366666
Q ss_pred EECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCC
Q 012186 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQ 311 (469)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 311 (469)
|++++|.+....+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 6666666655332 2345666666666666554444555556666666666655544343443 45566666666665
Q ss_pred CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHH
Q 012186 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAA 390 (469)
Q Consensus 312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 390 (469)
+.... ....+++|+.|++++|.++...+ .+..+++|+.|++++|.++.. +..+..+++|+.|++++|++. +..+.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHH
Confidence 54431 12235555555555555544332 244455555555555555542 222344455555555555554 33344
Q ss_pred HhHcCCCCCeeee
Q 012186 391 YLRNFKNLRSLEI 403 (469)
Q Consensus 391 ~~~~~~~L~~L~l 403 (469)
++..++.|+.+++
T Consensus 257 ~~~~l~~L~~l~~ 269 (487)
T 3oja_A 257 FFSKNQRVQTVAK 269 (487)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhCCCCcEEec
Confidence 4444444444433
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1e-22 Score=181.72 Aligned_cols=203 Identities=23% Similarity=0.188 Sum_probs=161.0
Q ss_pred CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (469)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (469)
+++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999988776667888999999999999888766667888899999999999887766667888899999999
Q ss_pred cCCCCChhhHHHhhCCCCCcEEecccCCCCch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC----EeecCCC
Q 012186 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT----HLDLFGA 382 (469)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 382 (469)
.+|.+.......++.+++|+.|++++|.+... .+..+..+++|+.|++++|.++...+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99888776655678889999999999888764 366778888999999999888875444444444444 7888888
Q ss_pred CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
.+++..+..+. ..+|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 88876554443 3478889999888887766667788889999998884
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=2e-22 Score=178.93 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=170.2
Q ss_pred CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (469)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (469)
.+.+.++++++.+... +..+ .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4577899988887653 2222 367999999999988766667888999999999999887665556778999999999
Q ss_pred cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (469)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (469)
++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99988877777778899999999999998887777788899999999999999887666688899999999999999987
Q ss_pred HHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
.+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77778889999999999999988766677889999999999995
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1.5e-21 Score=174.04 Aligned_cols=206 Identities=20% Similarity=0.176 Sum_probs=112.5
Q ss_pred CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776655556666777777777777666555555666666666666666665554455556666666666
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 339 (469)
++|.+....+..+..+++|+.|++++|.+.... .+..++.+++|+.|++++|.+...
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----------------------LPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----------------------CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceec-----------------------CchhhccCCCCCEEECCCCCCCcC
Confidence 666555433323445555555555555443311 123344445555555555544443
Q ss_pred HHHhhhCCCCCc----EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 340 SLRKLAGLSSLK----SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 340 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
.+..+..+++|+ .|++++|.++......+ ...+|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 333333222232 55555555554432222 2235666666666665554444555666666666665544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=177.01 Aligned_cols=227 Identities=17% Similarity=0.103 Sum_probs=152.9
Q ss_pred CCcEEECCCCCCChhHHHH---hhcCCCccEEEccCCCCchHHHHHh--hCCCCCCEEecCCCCCChH----HHHHhhCC
Q 012186 229 SLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDE----GLVNLTGL 299 (469)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~----~~~~~~~~ 299 (469)
.++.+.+.++.+....... +..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+... ....+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3445555554443322211 1223456666666666655444444 5666777777777765541 12334467
Q ss_pred CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH----HhhhCCCCCcEEEccCCCCCHHHHH---HHhcCC
Q 012186 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA---ALTSLT 372 (469)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~ 372 (469)
++|++|++++|.+....+..++.+++|++|++++|.+..... ..+..+++|+.|++++|.++..... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 777788887777766666667777888888888887654211 1224678889999998888753221 356789
Q ss_pred CCCEeecCCCCCChhHHHHhHcC---CCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCccccc
Q 012186 373 GLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449 (469)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 449 (469)
+|++|++++|.+++..|..+..+ ++|+.|++++|+++.. |..+ .++|++|++++| .++.... +..+++|+.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSN-RLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSC-CCCSCCC--TTSCCCCSC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCC-cCCCCch--hhhCCCccE
Confidence 99999999999888766656555 6999999999999854 5444 379999999999 7776422 567899999
Q ss_pred ccccCCCCCHHH
Q 012186 450 LNVSNSRITSAG 461 (469)
Q Consensus 450 L~l~~~~~~~~~ 461 (469)
|++++|++++.|
T Consensus 299 L~L~~N~l~~~g 310 (310)
T 4glp_A 299 LTLDGNPFLVPG 310 (310)
T ss_dssp EECSSTTTSCCC
T ss_pred EECcCCCCCCCC
Confidence 999999988653
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.8e-21 Score=172.93 Aligned_cols=209 Identities=21% Similarity=0.200 Sum_probs=146.5
Q ss_pred hhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCC
Q 012186 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (469)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (469)
...+++|+.|++.++.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34567888888888776642 3466778888888888877653 3567778888888888877665555567777888
Q ss_pred EEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCC
Q 012186 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (469)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (469)
+|++++|.+....+..++.+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888877776655556777777888877777776655556677777777777777776655556677777777777777
Q ss_pred CChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhC
Q 012186 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444 (469)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l 444 (469)
+++..+..+..+++|+.|++++|.+.. .++.|+.|+++.| .+.+..|..++.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n-~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN-KHSGVVRNSAGSV 245 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHH-HTGGGBBCTTSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHH-hCCCcccCccccc
Confidence 777666666777777777777776542 3566777777766 5555555544443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.1e-20 Score=169.02 Aligned_cols=194 Identities=28% Similarity=0.396 Sum_probs=154.2
Q ss_pred hcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (469)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (469)
..+++|++|++.++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3567899999999887753 257788999999999998876544 78889999999999887654 35778889999
Q ss_pred EeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCC
Q 012186 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (469)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 384 (469)
|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.++.... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999998877643 37888899999999888876544 7788889999998888887544 77888888999988888
Q ss_pred ChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 435 (469)
++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++| .++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE-EEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC-eeec
Confidence 87554 7788888888888888887653 677888888888888 4443
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-20 Score=167.48 Aligned_cols=134 Identities=23% Similarity=0.225 Sum_probs=53.4
Q ss_pred cCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEE
Q 012186 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329 (469)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 329 (469)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 33444444444433332222223333444444444443333222223334444444444443333322233344444444
Q ss_pred ecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCC
Q 012186 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (469)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (469)
++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 444444443333333444444444444444443333333344444444444443
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=6.1e-21 Score=169.52 Aligned_cols=182 Identities=24% Similarity=0.180 Sum_probs=76.6
Q ss_pred cCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCE
Q 012186 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (469)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 280 (469)
..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3344444444444433331 13334444444444444444333333344444444444444444333333344444444
Q ss_pred EecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (469)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (469)
|++++|.+....+..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 44444444333222233444444444444444433333334444444444444444443333344444444444444443
Q ss_pred CHHHHHHHhcCCCCCEeecCCCCCChhHHHH
Q 012186 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAY 391 (469)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 391 (469)
.. .+++|+.++++.|.+++.+|.+
T Consensus 218 ~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 218 DC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred cc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 32 2344444444444444443333
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.8e-19 Score=162.78 Aligned_cols=196 Identities=30% Similarity=0.390 Sum_probs=167.9
Q ss_pred ccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCC
Q 012186 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (469)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 279 (469)
...+++|+.|+++++.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34577899999999988774 268889999999999999887554 88999999999999998864 3688899999
Q ss_pred EEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (469)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (469)
.|++++|.+.... .+..+++|+.|++++|.+..... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999887643 48899999999999998877554 7899999999999999887654 8889999999999999
Q ss_pred CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 360 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
++.... +..+++|++|++++|++++.. .+..+++|+.|++++|.++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 987644 789999999999999999866 378899999999999988653
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.4e-20 Score=166.82 Aligned_cols=204 Identities=20% Similarity=0.106 Sum_probs=148.8
Q ss_pred hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCC
Q 012186 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278 (469)
Q Consensus 199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 278 (469)
.+..++++++++++++.++.. |..+ .++++.|++++|.+....+..+..+++|+.|++++|.++.... ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 456788899999998887764 3222 3688899999988887777778888889999998888775322 2577888
Q ss_pred CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (469)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (469)
+.|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888888877632 334567778888888888777666566777788888888888777666666667777888888777
Q ss_pred CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+++......+..+++|+.|++++|+++.. |..+...++|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 77766555566777777778777777753 444555667777777776654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=4.9e-20 Score=167.09 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=16.1
Q ss_pred CCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
++|+.|++++|++++. |. +..+++|+.|++++|
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 4555555555555443 11 334555555555555
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2e-19 Score=160.91 Aligned_cols=203 Identities=21% Similarity=0.178 Sum_probs=107.0
Q ss_pred ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCC
Q 012186 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (469)
Q Consensus 151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (469)
+.++++++++++.++. +.. .+..+ .++++.|++++|.++......+..+++|++|++++|.+..... ...+++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~- 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV- 78 (290)
T ss_dssp EECSTTCCEEECTTSC-CSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT-
T ss_pred ccccCCccEEECCCCC-CCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc-
Confidence 4455556666665522 222 11122 1455555555555554444455555555555555555443211 133444
Q ss_pred cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (469)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (469)
|+.|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 79 -----------------------L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 79 -----------------------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp -----------------------CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred -----------------------CCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 4555554444432 2223344555555555555554443344555556666666666
Q ss_pred CCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (469)
Q Consensus 311 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (469)
.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++.. +..+..+++|+.+++.+|++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 55554444455566666666666666655545555666677777776666643 333445566777777776554
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=8.7e-21 Score=165.27 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=87.3
Q ss_pred CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC-CchHHHHHhhCCCCCCEEecCC-CCCChHHHHHhhCCCCCCEEe
Q 012186 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE 306 (469)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 306 (469)
++++|++++|.+....+..+..+++|+.|++++|. ++...+..+..+++|+.|++++ +.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666655444455556666666666664 5443333455555666666655 555444333445555555555
Q ss_pred ccCCCCChhhHHHhhCCCCCc---EEecccC-CCCchHHHhhhCCCCCc-EEEccCCCCCHHHHHHHhcCCCCCEeecCC
Q 012186 307 LSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (469)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 381 (469)
+.+|.+..... +..+++|+ .|++++| .+....+..+..+++|+ .|++++|.++......+.. ++|++|++++
T Consensus 112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55554443211 34444444 5555555 44444333444445555 5555554444332222222 4444444444
Q ss_pred CC-CChhHHHHhHcC-CCCCeeeeCCCCCCH
Q 012186 382 AR-ITDSGAAYLRNF-KNLRSLEICGGGLTD 410 (469)
Q Consensus 382 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 410 (469)
|+ +++..+..+..+ ++|+.|++++|.++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 42 444333344444 444444444444443
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2e-20 Score=162.97 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=83.0
Q ss_pred CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC-CChhHHHHhhcCCCccEEEccC-CCCchHHHHHhhCCCCCCEEe
Q 012186 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 282 (469)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 282 (469)
++++|+++++.++...+..+..+++|++|++++|. +....+..|..+++|+.|++++ |.++...+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555444433344445555555555553 4443333444455555555554 444433333444455555555
Q ss_pred cCCCCCChHHHHHhhCCCCCC---EEeccCC-CCChhhHHHhhCCCCCc-EEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 283 LDSCGIGDEGLVNLTGLCNLK---CLELSDT-QVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
+++|.+...+ .+..+++|+ .|++++| .+.......+..+++|+ .|++++|.+.......+.. ++|+.|++++
T Consensus 112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 5554443311 134444444 5555555 44444333444455555 5555555444332222222 4455555555
Q ss_pred CC-CCHHHHHHHhcC-CCCCEeecCCCCCCh
Q 012186 358 RQ-ITDTGLAALTSL-TGLTHLDLFGARITD 386 (469)
Q Consensus 358 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 386 (469)
|. ++......+..+ ++|+.|++++|++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 52 444433444444 555555555554443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=5.7e-20 Score=161.25 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=145.1
Q ss_pred CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEec
Q 012186 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (469)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 331 (469)
...+.++++++.++. .|..+ .++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456788888887764 23322 257899999999887766667888899999999999888777777888899999999
Q ss_pred ccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988877777778889999999999988877666677888999999999988887777788889999999999988887
Q ss_pred HHHHHhcCCCCCeeeccCCC
Q 012186 412 GVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 412 ~~~~l~~~~~L~~L~l~~~~ 431 (469)
.+..+..+++|++|++++|+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 77677888899999999984
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=3.2e-19 Score=156.40 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=156.4
Q ss_pred CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (469)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (469)
.+.+.+++.++.+.... ..+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888776532 222 368999999999998777777889999999999999988776667889999999999
Q ss_pred cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (469)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (469)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999887777788999999999999999887777788899999999999999987766788999999999999999988
Q ss_pred HHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 388 GAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
.+..+..+++|+.|++++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 877888999999999999988654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2e-18 Score=154.48 Aligned_cols=168 Identities=29% Similarity=0.367 Sum_probs=124.7
Q ss_pred hcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcE
Q 012186 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (469)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 328 (469)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence 4567788888888877653 246778888888888887765443 777888888888888776632 3777888888
Q ss_pred EecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCC
Q 012186 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (469)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (469)
|++++|.+.+. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888877664 3566778888888888877765 456677888888888887777554 67778888888888877
Q ss_pred CHHHHHHHhcCCCCCeeeccCC
Q 012186 409 TDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 409 ~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
++.. .+..+++|+.|++++|
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEE
T ss_pred CCCh--hhccCCCCCEEECcCC
Confidence 7652 3667778888888877
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-17 Score=139.42 Aligned_cols=151 Identities=22% Similarity=0.320 Sum_probs=79.6
Q ss_pred CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeec
Q 012186 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (469)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 379 (469)
++|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34445555444444222 344455555555555544332 23445555555555555555444444555566666666
Q ss_pred CCCCCChhHHHHhHcCCCCCeeeeCCCC-CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 380 FGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
++|.+++..+..+..+++|+.|++++|. ++.. + .+..+++|++|++++| .++... .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcccC
Confidence 6666655555555566666666666665 4443 2 3556666666666666 454432 3556666666666666654
Q ss_pred H
Q 012186 459 S 459 (469)
Q Consensus 459 ~ 459 (469)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=7.6e-17 Score=144.25 Aligned_cols=173 Identities=30% Similarity=0.318 Sum_probs=146.3
Q ss_pred hcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (469)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (469)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4578899999999988764 347889999999999999886544 88899999999999988763 34888999999
Q ss_pred EeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCC
Q 012186 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (469)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 384 (469)
|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999988774 4678899999999999988875 567889999999999999988654 88999999999999999
Q ss_pred ChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 385 TDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
++.. .+..+++|+.|++++|.++..
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCh--hhccCCCCCEEECcCCcccCC
Confidence 8853 478899999999999887654
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.2e-17 Score=161.74 Aligned_cols=173 Identities=28% Similarity=0.362 Sum_probs=133.5
Q ss_pred hhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCc
Q 012186 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (469)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 327 (469)
+..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCC
Confidence 35667888888888887653 247788889999998888766443 778888888888888777632 577888888
Q ss_pred EEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCC
Q 012186 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (469)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (469)
.|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888887764 3577788888888888888775 567788888888888888887655 7778888888888888
Q ss_pred CCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 435 (469)
+.+. ..+..+++|+.|++++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8775 24777888888888888 4444
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=1.7e-16 Score=133.41 Aligned_cols=147 Identities=25% Similarity=0.353 Sum_probs=92.0
Q ss_pred CCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEc
Q 012186 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (469)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (469)
++|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34455555554443211 344455555555555543332 24556666666666666666555555666777777777
Q ss_pred cCCCCCHHHHHHHhcCCCCCEeecCCCC-CChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 356 DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
++|.++...+..+..+++|++|++++|. +++. + .+..+++|+.|++++|.+++.. .+..+++|++|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 7777776556667777777777777776 5553 2 5667777777777777777643 5667778888888877
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.6e-18 Score=142.89 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEcc
Q 012186 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (469)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (469)
+++.|+++++.+.......+..+++|++|++.+|.+.......+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444443332222223334444444444444333333333444444444444444443333334444455555555
Q ss_pred CCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (469)
Q Consensus 357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 436 (469)
+|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+++|++|+++.| .+++.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n-~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN-KHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHH-HCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHH-hCCce
Confidence 544444333334445555555555555544444344445555555555554331 2444555555555 44444
Q ss_pred HHHHHH
Q 012186 437 TLELIS 442 (469)
Q Consensus 437 ~~~~l~ 442 (469)
.|..++
T Consensus 181 ip~~~~ 186 (208)
T 2o6s_A 181 VRNSAG 186 (208)
T ss_dssp BBCTTS
T ss_pred eeccCc
Confidence 443333
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=5.6e-17 Score=150.06 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=106.0
Q ss_pred cEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEeccc
Q 012186 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (469)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 333 (469)
+.++++++.++. .|..+ .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466777666653 22222 23567777777776655444454 667777777777766665555566667777777777
Q ss_pred CCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHh---HcCCCCCeeeeCCCCCCH
Q 012186 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 410 (469)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 410 (469)
|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 76666555556666666666666666666555556666666666666666665444333 345666666666666665
Q ss_pred HHHHHHhcCCC--CCeeeccCCC
Q 012186 411 AGVKHIKDLSS--LTLLNLSQNC 431 (469)
Q Consensus 411 ~~~~~l~~~~~--L~~L~l~~~~ 431 (469)
..+..+..++. ++.|++++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 55555555554 3566666663
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=7.4e-17 Score=158.07 Aligned_cols=189 Identities=31% Similarity=0.306 Sum_probs=156.1
Q ss_pred CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (469)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 286 (469)
..+.+..+.+.... .+..+++|+.|++.++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 33444444444322 245678999999999988764 357889999999999999887544 889999999999999
Q ss_pred CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHH
Q 012186 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366 (469)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 366 (469)
.+... +.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 98 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 98 KIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 88753 3688899999999999988864 4588999999999999998875 568899999999999999988655
Q ss_pred HHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 367 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88999999999999999985 4688899999999999988764
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.3e-17 Score=149.67 Aligned_cols=283 Identities=14% Similarity=0.090 Sum_probs=122.0
Q ss_pred CCCCEEecccccccccccccccC-CCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccC-------
Q 012186 131 INLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG------- 202 (469)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------- 202 (469)
.+++.|.+++.- .......+.. +++|++|+++++.. .... ..-+.++.++.+.+..+.+. ...|.+
T Consensus 25 ~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i-~~~~-~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEI-KMYS-GKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEE-CCEE-ESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred CceeEEEEeccc-cHHHHHHHHHhhccCeEEecCccee-EEec-CccccccccccccccccccC---HHHhccccccccc
Confidence 466777776531 1111222333 66777777776432 2000 00011222333333333222 234455
Q ss_pred -CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC----chHHHHHhhCCCC
Q 012186 203 -LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI----TDECLVHLKGLTN 277 (469)
Q Consensus 203 -l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~~ 277 (469)
+++|+.+.+.+ .++.....+|.++++|+.+++..+.+.......|..+.++..+....... .......+..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777766 55555556677777777777777666555555555555555554433110 0000111233344
Q ss_pred CC-EEecCCCCCChHHHHHhh---CCCCCCEEeccCCCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhhCCCCCcE
Q 012186 278 LE-SLNLDSCGIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (469)
Q Consensus 278 L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (469)
|+ .+.+..... .....+. ...++..+.+.+.- .......+. .+++|+.+++++|.+......+|.++++|+.
T Consensus 178 L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 178 LETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cceeEEecCCCc--HHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 44 233322211 1111111 12334444443331 111111111 2444555555444444444444444444444
Q ss_pred EEccCCCCCHHHHHHHhcCCCCC-EeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCee
Q 012186 353 LNLDARQITDTGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425 (469)
Q Consensus 353 L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 425 (469)
+.+.++ ++.....+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++.++.++.+....|.++++|+.+
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 444443 3333334444444444 444444 3433333444444444444444444444434444444444443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=6.9e-17 Score=137.28 Aligned_cols=131 Identities=24% Similarity=0.197 Sum_probs=49.9
Q ss_pred CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (469)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (469)
++++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33344444333333222223333444444444443332222223334444444444443332222223334444444444
Q ss_pred CCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (469)
Q Consensus 309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (469)
+|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 443333222223334444444444444433333333334444444444443
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.4e-16 Score=145.52 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=72.5
Q ss_pred CCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc-EE
Q 012186 276 TNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK-SL 353 (469)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L 353 (469)
.+++.+.+.+. +.......+. .+++|+.+++.+|.+.......|.+|++|+.+.++.+ +......+|.++++|+ .+
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 44555555443 2222222222 3566666666665555555555666666666666655 5555555666666666 66
Q ss_pred EccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (469)
Q Consensus 354 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (469)
.+.+ .++.....+|.+|++|+.+++.++.++...+.+|.++++|+.++
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6665 55555556666667777777666666666666666666666654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=4.1e-17 Score=139.56 Aligned_cols=150 Identities=22% Similarity=0.239 Sum_probs=124.0
Q ss_pred CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (469)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (469)
+.++.+++.+...+ ..+ .++++.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777665432 122 358899999999888777667888899999999999988877788888999999999999
Q ss_pred CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9887766667788999999999999988878888888999999999999888877778888899999999985
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=8.1e-17 Score=137.74 Aligned_cols=150 Identities=20% Similarity=0.221 Sum_probs=119.4
Q ss_pred CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
+.++++++.++..+ ..+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888776432 222 3467889998888876533 3467888899999988888877777788888889999988
Q ss_pred CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88888777778888888888888888888777788888888888888888888777778888888888888884
No 108
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=136.15 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=143.7
Q ss_pred CCCCCEEecCCCCCChHHHHHhhC-----CCCCCEEeccCCCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhh---
Q 012186 275 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 345 (469)
Q Consensus 275 l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--- 345 (469)
.+.|+.|++++|.++......+.. .++|++|++++|.++......+. .+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999998766655442 36899999999998876655543 567899999999999887766653
Q ss_pred --CCCCCcEEEccCCCCCHHHHHH----HhcCCCCCEeecCCCCCChhH----HHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186 346 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 415 (469)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (469)
..++|+.|++++|.++..+... +..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 4688999999999998755444 367889999999999988765 455677889999999999998865544
Q ss_pred H----hcCCCCCeeeccCCCCCChhHHHHHHhCc--c---ccccc--ccCCCCCHHHHHhh
Q 012186 416 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSAGLRHL 465 (469)
Q Consensus 416 l----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~--~---L~~L~--l~~~~~~~~~~~~l 465 (469)
+ ..+++|++|++++| .++......+..+. . |+.+. +..+.+++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l 290 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHH
Confidence 3 45789999999999 78888887776542 2 77777 77788877654443
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=8.2e-18 Score=155.03 Aligned_cols=240 Identities=18% Similarity=0.137 Sum_probs=167.9
Q ss_pred CEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChh-HHHHhhcCCCccE-EEcc
Q 012186 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKV-LNLG 260 (469)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-L~l~ 260 (469)
+.++.+++.++..+. .+ .+++++|++++|+++...+..|.++++|++|++++|.+... ....|..++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456677777775432 22 36799999999999887667889999999999999987543 3346777888765 4555
Q ss_pred CCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCC-CCCcEEecccCCCCc
Q 012186 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL-TNLESINLSFTGISD 338 (469)
Q Consensus 261 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 338 (469)
+|.+....+..+..+++|+.|++++|.+.......+....++..+++.++ .+.......+..+ ..++.|.+++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 67777666777888999999999998876554444445556777887654 4554444444544 468888998888876
Q ss_pred hHHHhhhCCCCCcEEEccC-CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHh
Q 012186 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417 (469)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 417 (469)
.....+ ...+|+.+.+.+ +.++......+..+++|++|++++|+++...+.. +..|+.|.+.++.-....| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 544333 446788888875 6677666667788888999999998888765433 4556666655543322234 366
Q ss_pred cCCCCCeeeccCC
Q 012186 418 DLSSLTLLNLSQN 430 (469)
Q Consensus 418 ~~~~L~~L~l~~~ 430 (469)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 7888888888764
No 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=134.44 Aligned_cols=184 Identities=23% Similarity=0.310 Sum_probs=140.4
Q ss_pred CCCccEEEccCCCCchHHHHHhh-----CCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhh---
Q 012186 251 IGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLS--- 321 (469)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--- 321 (469)
++.|+.|++++|.++......+. ..++|+.|++++|.++......+. .+++|+.|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999875544442 236899999999999876665554 467899999999999887766653
Q ss_pred --CCCCCcEEecccCCCCchHHHhh----hCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCCCCChhHHH-
Q 012186 322 --GLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA- 390 (469)
Q Consensus 322 --~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~- 390 (469)
..++|+.|++++|.+++.....+ ..+++|++|++++|.++..+. ..+..+++|++|++++|.+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46899999999999987655444 678999999999999987664 4456788999999999999986543
Q ss_pred ---HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCC-----CCeee--ccCCCCCCh
Q 012186 391 ---YLRNFKNLRSLEICGGGLTDAGVKHIKDLSS-----LTLLN--LSQNCNLTD 435 (469)
Q Consensus 391 ---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-----L~~L~--l~~~~~l~~ 435 (469)
.+..+++|+.|++++|.+++.+...+..+.. |+.+. +..+ .+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCH
Confidence 4456799999999999999988887765422 66666 5555 4443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=2e-16 Score=136.20 Aligned_cols=150 Identities=21% Similarity=0.151 Sum_probs=107.4
Q ss_pred CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
.+.++.+++.+...+. .-.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4566666665543321 1236788888888877776666677788888888888877666556667778888888888
Q ss_pred CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
|.++......+..+++|++|++++|+++. +|..+..+++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 87777655566677888888888887774 45566777888888888887777655566777788888888874
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=3.9e-16 Score=144.42 Aligned_cols=176 Identities=21% Similarity=0.181 Sum_probs=142.7
Q ss_pred cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhh-CCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccC
Q 012186 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (469)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (469)
+.++.+++.+... |.. -.+.++.|++++|.++...+..+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4677777776653 222 235689999999998876666666 889999999999988877666788899999999999
Q ss_pred CCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHH---hcCCCCCEeecCCCCCCh
Q 012186 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL---TSLTGLTHLDLFGARITD 386 (469)
Q Consensus 310 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 386 (469)
|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+ ..+++|+.|++++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99888777778889999999999999988777888889999999999999887655544 568999999999999998
Q ss_pred hHHHHhHcCCC--CCeeeeCCCCCC
Q 012186 387 SGAAYLRNFKN--LRSLEICGGGLT 409 (469)
Q Consensus 387 ~~~~~~~~~~~--L~~L~l~~~~~~ 409 (469)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 87788888887 488999998765
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=5.2e-16 Score=150.37 Aligned_cols=186 Identities=15% Similarity=0.092 Sum_probs=116.3
Q ss_pred CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (469)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 284 (469)
+++.|+++++.+... |..+ .++|++|++++|.+... + ..+++|+.|++++|.+++ .+. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 788888888777653 3322 36788888888777642 2 446777888888777765 233 332 77777777
Q ss_pred CCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHH
Q 012186 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (469)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (469)
+|.+...+. .+++|+.|++++|.+..... .+++|+.|++++|.+..... +. ++|+.|++++|.++..+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 777665222 46677777777776665322 45677777777776665322 33 67777777777766432
Q ss_pred HHHHhcCCCC-------CEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhc
Q 012186 365 LAALTSLTGL-------THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418 (469)
Q Consensus 365 ~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 418 (469)
. +.. +| +.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2 222 44 677777776665 3444555677777777777777666666544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=3.1e-16 Score=134.14 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=131.7
Q ss_pred cEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccC
Q 012186 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (469)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 334 (469)
+.++++++.++.. |..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5778888777642 3222 268999999999988776667888999999999999998887888999999999999999
Q ss_pred CCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 998877777888999999999999999887788889999999999999999988888889999999999998764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=2.3e-16 Score=138.82 Aligned_cols=168 Identities=23% Similarity=0.332 Sum_probs=129.5
Q ss_pred CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEec
Q 012186 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (469)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 331 (469)
.++..++++++.+++.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44556667777666433 3566788999999998876543 57788899999999998887654 788899999999
Q ss_pred ccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
++|.+.+... +.. ++|+.|++++|.++.. ..+..+++|+.|++++|++++.. .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998876432 333 8899999999888875 35778889999999999888753 677888999999999888876
Q ss_pred HHHHHhcCCCCCeeeccCCCCCCh
Q 012186 412 GVKHIKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 412 ~~~~l~~~~~L~~L~l~~~~~l~~ 435 (469)
..+..+++|+.|++++| .+..
T Consensus 166 --~~l~~l~~L~~L~l~~N-~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQ-KCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEE-EEEC
T ss_pred --HHhccCCCCCEEeCCCC-cccC
Confidence 45777888999999888 4443
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=4.7e-16 Score=143.26 Aligned_cols=239 Identities=18% Similarity=0.118 Sum_probs=129.8
Q ss_pred cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (469)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (469)
++++.++++++ .+|..+ .+++++|++++ +.++.....+|.++++|++|++++|.+.....+..|.++++++++...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555665555 234333 24666666666 355555555666666777777766654333333455566666554433
Q ss_pred cccccccc-cccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecc-cccChhhhhhccCCC-CCCeeeccCCCC
Q 012186 140 RCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQ-KLTLLNLEGCPV 216 (469)
Q Consensus 140 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~ 216 (469)
.+..+... +..+..+++|++|+++++. +.......+....++..+++.+ +.+.......+..+. .++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 32233333 3456667777777776633 3333333333445556666644 345444444444443 466777777776
Q ss_pred chhhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCC-CChHHHH
Q 012186 217 TAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 294 (469)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~ 294 (469)
+...+..+ ...+|+.+.+.+ +.+.......|..+++|+.|++++|.++..... .+.+|+.|.+.++. +... +
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l--P 240 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL--P 240 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC--C
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC--C
Confidence 65433333 345677777754 445544445567777777777777777643222 24455565554442 2211 1
Q ss_pred HhhCCCCCCEEeccC
Q 012186 295 NLTGLCNLKCLELSD 309 (469)
Q Consensus 295 ~~~~~~~L~~L~l~~ 309 (469)
.+..+++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 355677777777754
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=7.6e-16 Score=131.68 Aligned_cols=153 Identities=17% Similarity=0.244 Sum_probs=131.4
Q ss_pred ccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHH-HHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecc
Q 012186 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (469)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 332 (469)
-+.++++++.++. .|..+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3588999888775 23322 3467899999998876533 347789999999999999988777788999999999999
Q ss_pred cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998888888899999999999999999887778889999999999999999988888999999999999999875
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.7e-15 Score=121.22 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCCcEEecccCCCC-chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186 324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (469)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (469)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 23333445566666666666666654 4455667777777777777665566666677777777
Q ss_pred eCCCCCCHH-HHHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccccC
Q 012186 403 ICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSN 454 (469)
Q Consensus 403 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~ 454 (469)
+++|.+++. .+..+..+++|++|++++| .++...+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 777777664 2356667777777777777 5555544 4667777777777653
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=5.9e-15 Score=142.97 Aligned_cols=134 Identities=20% Similarity=0.147 Sum_probs=80.6
Q ss_pred CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (469)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (469)
+|+.|+++++. +.. .+..+ .++|++|++++|.++..+ ..+++|++|++++|.++.. +. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 78888887744 443 22323 367888888887777433 4467777777777776663 32 333 7777777
Q ss_pred CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC
Q 012186 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (469)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (469)
++|.+... +. .+++|+.|++++|.++.. +. .+++|+.|++++|.+...+. +. ++|+.|++++|.+.
T Consensus 128 s~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTML-PE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCcCCCC-CC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence 77776652 22 456677777777666542 21 34566666666666554221 32 56666666666554
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-15 Score=133.95 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=139.0
Q ss_pred CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (469)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (469)
.++..+++.++.+.+.. .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44556667777766533 4677899999999999987542 67889999999999998876554 889999999999
Q ss_pred cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (469)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (469)
++|.+..... +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.++... .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998876432 333 8999999999998875 35888999999999999998863 688999999999999999986
Q ss_pred HHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 388 GAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
..+..+++|+.|++++|.++..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6678899999999999987655
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.1e-15 Score=124.94 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCCcEEecccCCCC-chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186 324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (469)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (469)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44444444444443 12222334445555555555555443 3344555555555555555554444555556666666
Q ss_pred eCCCCCCHHH-HHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccccCCCCCH
Q 012186 403 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 403 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~~ 459 (469)
+++|.+++.. +..+..+++|++|++++| .++...+ ..+..+++|+.|++++|.+.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6666555532 244555666666666666 4444433 355566666666666665543
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=2.2e-15 Score=129.76 Aligned_cols=153 Identities=21% Similarity=0.169 Sum_probs=121.3
Q ss_pred CccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecc
Q 012186 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (469)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 332 (469)
..+.++.+++.+... |.. -.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~i-p~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV-PAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCcc-CCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 356777777766532 222 23788999999988877666677888899999999998877666667888999999999
Q ss_pred cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9988877666777888999999999888854 455678889999999999888877777888889999999988776
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.2e-14 Score=116.26 Aligned_cols=128 Identities=24% Similarity=0.288 Sum_probs=84.2
Q ss_pred CCCCEEeccCCCCC-hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEee
Q 012186 300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (469)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 378 (469)
++++.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555554 22233445566666666666666554 4556667777777777777764455666677777777
Q ss_pred cCCCCCChh-HHHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeeccC
Q 012186 379 LFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQ 429 (469)
Q Consensus 379 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 429 (469)
+++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777764 34667777888888888877776544 4667788888887763
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=9.6e-17 Score=156.35 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=85.7
Q ss_pred CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
.|+.|++++|.++.. +. +..+++|+.|++++|.++.. +..+..+++|+.|++++|.+++. | .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 577777777777653 22 66777788888887777743 45677777888888888877773 3 67777888888888
Q ss_pred CCCCCHHH-HHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccc
Q 012186 405 GGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNV 452 (469)
Q Consensus 405 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l 452 (469)
+|.+++.. |..++.+++|+.|++++| .++..++ ..+..+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 88777765 677777888888888887 5555432 23445777777753
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=1.5e-14 Score=134.68 Aligned_cols=262 Identities=10% Similarity=0.096 Sum_probs=119.7
Q ss_pred CCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEE
Q 012186 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (469)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (469)
..++.+.+.. .+......++.++ +|+.+.+..+ ++......|.++ +|+.+.+.. .+.......|..+++|+.++
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4455555442 2333333444443 4555555433 333333344442 355555543 23333334455555555555
Q ss_pred CCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh
Q 012186 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (469)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (469)
+..+.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. .+|+.+.+.+ .+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 555544443333333 345555555432 33233344555555555555543 22222333433 4555555532 2333
Q ss_pred hhHHHhhCCCCCcEEecccCCCC-----chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHH
Q 012186 315 SGLRHLSGLTNLESINLSFTGIS-----DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (469)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 389 (469)
.....|..|++|+.+.+.++... .....+|..|++|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 33444555555555555554332 22334445555555555552 344444444555555555555332 444444
Q ss_pred HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC-CCCeeeccCC
Q 012186 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN 430 (469)
Q Consensus 390 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 430 (469)
.+|.++ +|+.+.+.+|.........|.+++ .++.|.+..+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 445555 555555555544443333333342 4445544443
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=1.1e-14 Score=136.35 Aligned_cols=315 Identities=16% Similarity=0.133 Sum_probs=161.8
Q ss_pred HhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151 (469)
Q Consensus 72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 151 (469)
....+|..|.+|+.+.+.. .++.....+|.+|.+|+.+++..+ +.......|..+.+|+.+.+... .......++
T Consensus 62 Ig~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred hHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3346788888999988864 467777778888888998888765 23344566778888888777653 222233445
Q ss_pred cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (469)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (469)
..+..++...... .......++.++++|+.+.+.++. .......|.++++|+.+.+..+ +.......+..+..|+
T Consensus 137 ~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccccccCcc---ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 5554433333222 223334566777778887776442 3344456677777777777654 3333344566666666
Q ss_pred EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCC
Q 012186 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311 (469)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (469)
.+.+..+...- .........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+.....
T Consensus 212 ~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~- 286 (394)
T 4fs7_A 212 NMEFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV- 286 (394)
T ss_dssp BCCCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS-
T ss_pred eeecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce-
Confidence 66554432110 0111223445555543221 111122334445555555544321 111223334444444443332
Q ss_pred CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHH
Q 012186 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391 (469)
Q Consensus 312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 391 (469)
.+.+ ..+..+.+|+.+.+..+ ++..+..++.+|.+|+.+++.++ ++.+...+
T Consensus 287 -----------------------~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 287 -----------------------IVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp -----------------------EECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred -----------------------eecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 2111 22334444555444332 33333344445555555555432 44444445
Q ss_pred hHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
|.+|.+|+.+.+..+ ++......|.+|++|+.+++..+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 555555655555543 44444445556666666666544
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.2e-15 Score=148.59 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=130.3
Q ss_pred cCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCE
Q 012186 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (469)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 280 (469)
..+++|+.|++++|.+.. .|..++.+++|+.|++.++......+..+. .+...+..+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence 456677777777776654 366777777777777754421000000000 00112223334444444444
Q ss_pred Ee-cCCCCCChH--------HHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc
Q 012186 281 LN-LDSCGIGDE--------GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (469)
Q Consensus 281 L~-l~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (469)
|+ ++.+.+... ....+. ...|+.|++++|.+.... . ++.+++|+.|++++|.+.. .|..++.+++|+
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~ 489 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLE 489 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCC
T ss_pred CcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCCc-C-ccccccCcEeecCcccccc-cchhhhcCCCCC
Confidence 44 222211110 011111 135778888888776643 2 7778888888888887774 456777888888
Q ss_pred EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeec
Q 012186 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNL 427 (469)
Q Consensus 352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l 427 (469)
.|++++|.++..+ .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+ ..+..+|+|+.|++
T Consensus 490 ~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 490 VLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888888753 6778888888888888888876 7788888888888888888876533 23345888888864
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.9e-14 Score=117.55 Aligned_cols=129 Identities=25% Similarity=0.279 Sum_probs=84.1
Q ss_pred CCCCEEeccCCCCC-hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEee
Q 012186 300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (469)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 378 (469)
++|+.|++.+|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555544 12233345566666777766666554 4555667777777777777664455555677777777
Q ss_pred cCCCCCChhH-HHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeeccCC
Q 012186 379 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 379 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 430 (469)
+++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7777777643 2566677778888888877766544 46677888888888888
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=6.9e-14 Score=130.28 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=135.0
Q ss_pred CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (469)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (469)
+|+.+.+.. .+......++.++ +|+.+.+.. .+.......|.+|++|+.+++.++.+.......|. +.+|+.+.+
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 455555443 1333333344442 455555543 33333344555555555555555555444334444 355666655
Q ss_pred CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC--
Q 012186 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-- 313 (469)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-- 313 (469)
..+ +.......|..+++|+.+.+..+ +.......|.. .+|+.+.+.++ +......+|..|++|+.+.+.++...
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 432 43334445555666666666543 22222334444 46666666433 44444455666777777777665433
Q ss_pred ---hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186 314 ---SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (469)
Q Consensus 314 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 390 (469)
......|.+|++|+.+.+.. .+......+|.+|++|+.+.+.. .++.....+|.+| +|+.+.+.+|........
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 33445567777777777773 46555666777778888888754 3555555667777 888888887766655445
Q ss_pred HhHcCC-CCCeeeeCCCCC
Q 012186 391 YLRNFK-NLRSLEICGGGL 408 (469)
Q Consensus 391 ~~~~~~-~L~~L~l~~~~~ 408 (469)
.+..++ .++.|.+..+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 555553 677777776543
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=4.5e-14 Score=132.23 Aligned_cols=306 Identities=16% Similarity=0.148 Sum_probs=196.0
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
.+.+|+++.+.. .++.....+|..|.+|+.+++.. .++.....+|..+.+|+.+.+...- ......+|..+..+.
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l--~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLML--KSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTC--CEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCce--eeecceeeecccccc
Confidence 467899999974 36655667899999999999975 3677777889999999998887542 233445566665544
Q ss_pred EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
....... ......++..+++|+.+.+.. .........+.++.+|+.+.+..+ ++......+..+..|+.+.+..+
T Consensus 144 ~~~~~~~--~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 144 ITIPEGV--TVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccCccc--cccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 4443332 222345688999999999975 244455677888999999988765 44455567788889998888765
Q ss_pred CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHH
Q 012186 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (469)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 294 (469)
.... ........+|+.+.+... ........+..+..++.+.+..+... .....+..+..++.+......+. ..
T Consensus 219 ~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 219 LYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp CCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred ceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cc
Confidence 3322 122334578888887643 23333345677888999988765432 23345677888888877654332 23
Q ss_pred HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (469)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (469)
.+..+.+|+.+.+..+ +.......|.+|.+|+.+.+..+ +......+|.+|.+|+.+.+..+ ++..+..+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4667778888877654 44444445666677777766532 44444445555566666655443 443334445555555
Q ss_pred CEeecC
Q 012186 375 THLDLF 380 (469)
Q Consensus 375 ~~L~l~ 380 (469)
+.+++.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 555553
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=3.2e-14 Score=117.10 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=47.7
Q ss_pred CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeec
Q 012186 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 427 (469)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l 427 (469)
+|+.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 444444444444432 233344444444444444444333333444555555555554443221 13444555555555
Q ss_pred cCCCCCChhHHH---HHHhCcccccccccCCCCCH
Q 012186 428 SQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 428 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~ 459 (469)
++| .+...... .+..+++|+.|++++|...+
T Consensus 121 ~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 555 23322211 24455555555555555443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.8e-14 Score=120.31 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=102.6
Q ss_pred CCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHH-hhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (469)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (469)
.+.++++++.+..... . -.++++.|++++|.+....+. .+..+++|+.|++++|.++...+..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-D--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCS-C--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCcc-C--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3678888887755332 1 234889999999988776543 47788899999999999888777778888999999999
Q ss_pred CCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
+|++++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999988877778888999999999999888877788888899999999984
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=5.7e-15 Score=124.19 Aligned_cols=133 Identities=23% Similarity=0.253 Sum_probs=78.0
Q ss_pred HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (469)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (469)
.+..+++|++|++++|.+... + .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 455556666666666555442 2 455556666666666655533 23334456666666666666663 2 45566667
Q ss_pred CeeeeCCCCCCHHHH-HHHhcCCCCCeeeccCCCCCChhHH----------HHHHhCcccccccccCCCCCH
Q 012186 399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL----------ELISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 399 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L~l~~~~~~~ 459 (469)
+.|++++|.++...+ ..+..+++|++|++++| .+....+ ..+..+++|+.|+ ++++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777766665433 45566677777777777 4433322 2356778888776 555554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=2.5e-13 Score=111.69 Aligned_cols=128 Identities=21% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCCEEeccCCCCChhhHHHhhC-CCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEe
Q 012186 299 LCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377 (469)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 377 (469)
+++|+.|++++|.+... + .+.. .++|+.|++++|.+.+. ..+..+++|+.|++++|.++...+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444455544444432 1 1222 23555555555555543 345555666666666666665433444566666666
Q ss_pred ecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHH---HHhcCCCCCeeeccCC
Q 012186 378 DLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK---HIKDLSSLTLLNLSQN 430 (469)
Q Consensus 378 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~ 430 (469)
++++|.++.... ..+..+++|+.|++++|.++..... .+..+++|+.|++++|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666666655322 2556667777777777666543221 3566777777777777
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=9.9e-14 Score=114.35 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=105.6
Q ss_pred CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (469)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (469)
+.+.+++.++.+.... ....++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567888887766543 2234789999999998887666677888999999999999887766667788999999999
Q ss_pred CCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (469)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 436 (469)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceecc
Confidence 99998877777788899999999999988776666677899999999999 44443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=115.28 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=98.2
Q ss_pred CEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC
Q 012186 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (469)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 382 (469)
+.++++++.+..... .-.++|+.|++++|.+.... ..+..+++|+.|++++|.++......+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~---~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK---GIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCS---CCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCC---CCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777776665331 12468888998888887543 67778888888888888888876677888888888888888
Q ss_pred CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
.++...+..+..+++|+.|++++|.++...+..|..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8888777778888888888888888887766667778888888888885
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3.9e-14 Score=142.40 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=71.2
Q ss_pred HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCC
Q 012186 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349 (469)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 349 (469)
..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..++.+++|+.|++++|.+.. .+..+..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCC
Confidence 3445555566666666555422 223335556666666666555 233445566666666666665552 3445555666
Q ss_pred CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCC-CCeeeeCCCCCCH
Q 012186 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTD 410 (469)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 410 (469)
|+.|++++|.++.. +..+..+++|+.|++++|.+++.+|..+..+.. +..+++++|.+++
T Consensus 295 L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 295 LKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 66666666666543 333556666666666666666655555433211 1124455555543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=1.9e-13 Score=114.02 Aligned_cols=129 Identities=16% Similarity=0.258 Sum_probs=111.5
Q ss_pred CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH-HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
+.++++++.+...+ ..+ .++++.|++.+|.+....+. .++.+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78899988876432 222 34899999999988876553 478999999999999999988888899999999999999
Q ss_pred CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCH
Q 012186 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (469)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (469)
|.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99998877778899999999999999999888889999999999999998874
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=7.5e-13 Score=109.03 Aligned_cols=132 Identities=17% Similarity=0.127 Sum_probs=105.1
Q ss_pred CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
.+.++++++.+...+ ....++|+.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467788777765432 12346889999999988776666678889999999999988877666678889999999999
Q ss_pred CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHH
Q 012186 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412 (469)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (469)
|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9888776666778899999999999888876666778899999999999887543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=108.36 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=107.5
Q ss_pred CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (469)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (469)
+.++++++.+...+ .. -.++++.|++.+|.+.... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888776432 22 2368999999999887544 67889999999999999998887788899999999999999
Q ss_pred CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999887778889999999999999999877777888999999999998764
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=1.6e-13 Score=138.00 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=72.5
Q ss_pred HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCC
Q 012186 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325 (469)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (469)
..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.. .+..++.+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCC
Confidence 344555556666666555542 2233335566666666666555 223445556666666666665552 3444566666
Q ss_pred CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCC-CCCEeecCCCCCChh
Q 012186 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS 387 (469)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~ 387 (469)
|++|++++|.+... +..+..+++|+.|++++|.+++..+..+..+. .+..+++.+|.+++.
T Consensus 295 L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 295 LKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp CSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 66666666665532 33456666666666666666655554443221 112245555555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=5e-14 Score=118.38 Aligned_cols=127 Identities=26% Similarity=0.285 Sum_probs=79.6
Q ss_pred HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (469)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (469)
.+..+++|++|++++|.+.... .+..+++|+.|++++|.+... +..+..+++|+.|++++|.++... .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 4555666666666666554422 455666667777766655532 233444566777777777776642 46666777
Q ss_pred CEeecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHH----------HHhcCCCCCeee
Q 012186 375 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK----------HIKDLSSLTLLN 426 (469)
Q Consensus 375 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~ 426 (469)
+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777777776443 4566777777777777776554332 366788888886
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.29 E-value=2.7e-11 Score=110.71 Aligned_cols=144 Identities=21% Similarity=0.236 Sum_probs=74.4
Q ss_pred hhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCC--CCC-Ch----hHHH
Q 012186 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFG--ARI-TD----SGAA 390 (469)
Q Consensus 320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~--~~~-~~----~~~~ 390 (469)
+..+|+|+.|.+.++.-.... .+ ..++|+.|.+..+.++......+. .+|+|++|+++. +.. .+ .+..
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 345555555555554111100 11 245666666666665555444443 456666666532 110 00 0001
Q ss_pred Hh--HcCCCCCeeeeCCCCCCHHHHHHHh---cCCCCCeeeccCCCCCChhHHHHH----HhCcccccccccCCCCCHHH
Q 012186 391 YL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSAG 461 (469)
Q Consensus 391 ~~--~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~ 461 (469)
.+ ..+|+|+.|++.+|.+.+..+..+. .+++|++|+++.| .+++..+..+ ..+++|+.|++++|.+++.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 11 2356666666666666654444343 3556777777666 5666443333 34566777777777777777
Q ss_pred HHhhhh
Q 012186 462 LRHLNH 467 (469)
Q Consensus 462 ~~~l~~ 467 (469)
++.+++
T Consensus 324 ~~~l~~ 329 (362)
T 2ra8_A 324 KKELQK 329 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=3.5e-11 Score=112.60 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=71.6
Q ss_pred HhhhcCC-CCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCC--cCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186 75 IHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151 (469)
Q Consensus 75 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 151 (469)
.+|..|. .|+.+.+.. .++.....+|.+|.+|+.+.+..+. .+......+|..+.+|+.+.+..+ .......++
T Consensus 57 ~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 4455553 466666654 3555556666666666666664321 122223344555666666555442 122222345
Q ss_pred cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (469)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (469)
..+.+|+.+.+.. .........+..+..|+.+.+..+ +.......|.. ..|+.+.+...- .......+..+.++.
T Consensus 134 ~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCC
T ss_pred hhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccc
Confidence 5566666666542 233333344555566666655433 22222223322 345555554331 111123344445555
Q ss_pred EEEC
Q 012186 232 YLNL 235 (469)
Q Consensus 232 ~L~l 235 (469)
....
T Consensus 209 ~~~~ 212 (394)
T 4gt6_A 209 TITS 212 (394)
T ss_dssp EEEE
T ss_pred eecc
Confidence 4443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=7.8e-11 Score=110.19 Aligned_cols=323 Identities=15% Similarity=0.156 Sum_probs=180.2
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCC--cccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
..++++.+..+ ++.....+|..|.+|+.+.+..+ ..++.....+|..|.+|+.+.+..+ +.......|..+.+|+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 35889999754 66666688999999999998652 2466677788889999998888765 2344456778899999
Q ss_pred EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
.+.+... .......++..+..|+.+.+.. .+......++.. ..|+.+.+.... .......+..+..+........
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCS
T ss_pred cccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccc
Confidence 9999763 3333446688899999999875 244444455543 578898886543 2234456777888887766554
Q ss_pred CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHH
Q 012186 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (469)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 294 (469)
.........+........... .+.....+..+.+... +.......|..+..|+.+.+.... ......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~ 282 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTG 282 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTT
T ss_pred ccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCc
Confidence 322210000111110000000 0011122222322211 111112345555666666665432 122233
Q ss_pred HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (469)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (469)
++..+++|+.+.+.. .+.......|.+|.+|+.+.+..+ +......+|.+|.+|+.+.+.. .++..+..+|.+|.+|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence 455666666666643 233334445666666666666543 4444445666677777777753 2444445566677777
Q ss_pred CEeecCCCCCChhHHHHhHcCCCCCeeeeCCC
Q 012186 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (469)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (469)
+.+++.++... ...+..+..|+.+.+..+
T Consensus 360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 77777665321 234445666666666543
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=1.7e-10 Score=105.33 Aligned_cols=154 Identities=22% Similarity=0.331 Sum_probs=82.3
Q ss_pred hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh--CCCCCcEEEccCC--C------CCHHHH
Q 012186 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR--Q------ITDTGL 365 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~------~~~~~~ 365 (469)
+..+|+|+.|.+.++.-.... .+ ..++|+.|.+..|.+.......+. .+|+|+.|+|+.+ . +....
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~- 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR- 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-
T ss_pred HhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-
Confidence 344555666655554111100 01 245666666666666555444443 4566666665321 1 10000
Q ss_pred HHH--hcCCCCCEeecCCCCCChhHHHHhH---cCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCCCCCChh
Q 012186 366 AAL--TSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDK 436 (469)
Q Consensus 366 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 436 (469)
..+ ..+|+|+.|++.+|.+.+..+..+. .+++|+.|+++.|.+.+.++..+ ..+++|+.|++++| .++..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence 011 2366777777777766655444443 35677777777777776554433 34577777777777 56666
Q ss_pred HHHHHHh-CcccccccccCCC
Q 012186 437 TLELISG-LTGLVSLNVSNSR 456 (469)
Q Consensus 437 ~~~~l~~-l~~L~~L~l~~~~ 456 (469)
....+.. + ..++++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 6555553 3 2446666655
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=5.1e-12 Score=103.00 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=86.8
Q ss_pred CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
..+.++++++.+.... ..+ .++|+.|++++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578888888776643 222 3789999999999998877778889999999999999998877778889999999999
Q ss_pred CCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 405 GGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
+|+++...+..|..+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999988877678889999999999994
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=1.2e-11 Score=101.18 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=82.8
Q ss_pred cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCC
Q 012186 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (469)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (469)
+.++++++.+.... ..+. ++|+.|++++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888775532 2232 78999999999998877777888899999999999998876666788899999999999
Q ss_pred CCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 407 GLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 407 ~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
+++...+..|..+++|++|++++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 9888766667888999999999984
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.07 E-value=2e-09 Score=88.73 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=71.4
Q ss_pred hhhCCCCCcEEEccCC-CCCHHHHH----HHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHH
Q 012186 343 KLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGV 413 (469)
Q Consensus 343 ~~~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~ 413 (469)
.+...+.|++|++++| .+...+.. .+...++|++|++++|.+.+... ..+...++|+.|++++|.+.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344555555555555 55544332 23345666666666666665443 334455677777777777776543
Q ss_pred H----HHhcCCCCCeeec--cCCCCCChhHHH----HHHhCcccccccccCCCCCHHH
Q 012186 414 K----HIKDLSSLTLLNL--SQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSAG 461 (469)
Q Consensus 414 ~----~l~~~~~L~~L~l--~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~ 461 (469)
. .+...++|++|++ ++| .++..... .+...++|++|++++|++.+.|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3 3345667888888 667 66665443 3445578888888888887776
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.06 E-value=3.6e-10 Score=90.40 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCC----CCCCEEeCCCCCcCcHHHHHHHhCCCC
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (469)
-.+++|+++++.+++.....+..|++|+.|++++|..+++.....+..+ ++|++|++++|..+++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3688888888888888777888888888888888888888888888775 478888888887777777777888888
Q ss_pred CCEEeccccccccc
Q 012186 133 LVKLDLERCTRIHG 146 (469)
Q Consensus 133 L~~L~l~~~~~~~~ 146 (469)
|++|++++|+.+..
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888765554
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=6.6e-11 Score=96.33 Aligned_cols=106 Identities=20% Similarity=0.168 Sum_probs=90.9
Q ss_pred CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (469)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (469)
..+.++++++.+.... .. -.++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip-~~--~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccC-cc--CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999988777643 22 24889999999999988878888899999999999999998777778899999999999
Q ss_pred CCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 381 GARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+|++++..+..+..+++|+.|++++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999887777889999999999999875
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.00 E-value=8.7e-10 Score=88.18 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=60.8
Q ss_pred CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC-CCChhHHHHhHcC----CCCCeeeeCCCC-CCHHHHHHHhcCCCC
Q 012186 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF----KNLRSLEICGGG-LTDAGVKHIKDLSSL 422 (469)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~L 422 (469)
.|+.|++++|.++..+...+..|++|++|++++| .+++.....+..+ ++|+.|++++|. +++.+...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555555555555555666666666665 3555555555442 467777777763 777777777777888
Q ss_pred CeeeccCCCCCChhHH--HHH-HhCcccc
Q 012186 423 TLLNLSQNCNLTDKTL--ELI-SGLTGLV 448 (469)
Q Consensus 423 ~~L~l~~~~~l~~~~~--~~l-~~l~~L~ 448 (469)
++|++++|+.+++... ..+ ..+|+++
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8888888877776432 222 2456543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.95 E-value=7.3e-10 Score=103.12 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=47.3
Q ss_pred hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC
Q 012186 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 375 (469)
+..+..|+.+.+..+ +.......+..+.+|+.+.+... +......++..|++|+.+.+.++.++.....+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344444555544332 22222333444445555544322 2222333444455555555554444444444455555555
Q ss_pred EeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 376 HLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5555432 333334444555555555554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.9e-10 Score=92.85 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=50.7
Q ss_pred CCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeee
Q 012186 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (469)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (469)
++|+.|++++|.+....+..+..+++|+.|++++|+++......+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45555555555555554455555666666666666665544444555666666666666666554445566666666666
Q ss_pred CCCCCC
Q 012186 404 CGGGLT 409 (469)
Q Consensus 404 ~~~~~~ 409 (469)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666554
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=2.5e-09 Score=99.48 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=93.3
Q ss_pred HhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCC
Q 012186 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (469)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 326 (469)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +......++..+.+|+.+.+... +.......+..|++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566666666543 22222344566777777777654 33344445667777887777543 444444566778888
Q ss_pred cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCC
Q 012186 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397 (469)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 397 (469)
+.+.+..+.+......+|.+|.+|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.+...+|.+++.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 8888877777666667777888888888864 355555667778888888888653 55555556655543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=1.5e-08 Score=83.37 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=66.7
Q ss_pred hCCCCCcEEecccC-CCCchHHH----hhhCCCCCcEEEccCCCCCHHHHH----HHhcCCCCCEeecCCCCCChhH---
Q 012186 321 SGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSG--- 388 (469)
Q Consensus 321 ~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~--- 388 (469)
...+.|++|++++| .+.+.... .+...++|++|++++|.+...+.. .+...++|++|++++|.+.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34444555555554 44443322 223345666666666666554432 2334566777777777776654
Q ss_pred -HHHhHcCCCCCeeee--CCCCCCHHHHHH----HhcCCCCCeeeccCCCCCCh
Q 012186 389 -AAYLRNFKNLRSLEI--CGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 389 -~~~~~~~~~L~~L~l--~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~l~~ 435 (469)
...+...++|+.|++ ++|.+.+.+... +...++|++|++++| .+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCCh
Confidence 334456677888888 677777665433 345678888888888 4443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=7.2e-10 Score=101.84 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=83.6
Q ss_pred EEecccC-CCCchHHHhhhCCCCCcEEEccC-CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186 328 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (469)
Q Consensus 328 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (469)
.++.+++ .+... |. ++.+++|+.|+|++ |.++...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 67663 44 88888999999996 999988777888999999999999999998888889999999999999
Q ss_pred CCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 406 ~~~~~~~~~~l~~~~~L~~L~l~~~~ 431 (469)
|+++...+..+..++ |+.|++.+|+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCC
Confidence 999887655555554 9999999994
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2.5e-09 Score=98.23 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred CEEeccCC-CCChhhHHHhhCCCCCcEEeccc-CCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186 303 KCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (469)
Q Consensus 303 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (469)
..+++.++ .+... +. +..+++|+.|++++ |.+....+..+..+++|+.|+|++|.++...+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677777 67664 44 88899999999996 99998888889999999999999999999888888999999999999
Q ss_pred CCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 381 GARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+|++++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999987666666555 999999999876
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=8.8e-07 Score=76.53 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=49.9
Q ss_pred hcCCCCCEeecCCCCCCh--hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC--CCCeeeccCCCCCChh-------H
Q 012186 369 TSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS--SLTLLNLSQNCNLTDK-------T 437 (469)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~l~~~-------~ 437 (469)
.++++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+. ..+..+. +|++|++++|+ +... .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST-TGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc-CccccCcchhHH
Confidence 356777777777777766 3345556677777777777777664 2233333 77778887774 4321 2
Q ss_pred HHHHHhCccccccc
Q 012186 438 LELISGLTGLVSLN 451 (469)
Q Consensus 438 ~~~l~~l~~L~~L~ 451 (469)
...+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 23456777777765
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.08 E-value=7.7e-05 Score=60.79 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=40.7
Q ss_pred CCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCCC--CCChh----
Q 012186 371 LTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNC--NLTDK---- 436 (469)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~l~~~---- 436 (469)
-..|++|++++|.+.+... ..+..-++|+.|++++|.|.+.+...+ ..-+.|++|++++|. .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3445555555555544332 223344555555555555555443333 223446666665432 23332
Q ss_pred HHHHHHhCcccccccccCCCCC
Q 012186 437 TLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 437 ~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
+.+.+..-+.|+.|+++.+...
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 2233344455666666544433
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=3.4e-05 Score=66.59 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=56.3
Q ss_pred HHhcCCCccEEEecCCCCCh--HhhHhhhcCCCCCEEecCCCcccChh-HhHhhhCCCCCCEEeCCCCCcCc------HH
Q 012186 52 IASQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAIT------AQ 122 (469)
Q Consensus 52 ~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~------~~ 122 (469)
+....+++++|+|++|.+++ .++..+..+++|+.|+|++| .++.. ....+..+ +|++|++++|.+.. ..
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 33467888888888888876 44566678888888888884 55543 23333334 88888888887532 12
Q ss_pred HHHHHhCCCCCCEEec
Q 012186 123 GMKAFAGLINLVKLDL 138 (469)
Q Consensus 123 ~~~~~~~l~~L~~L~l 138 (469)
....+..+++|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 2345567777777763
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.88 E-value=0.00021 Score=58.24 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=18.3
Q ss_pred cCCCCCeeeeCCC---CCCHHH----HHHHhcCCCCCeeeccCC
Q 012186 394 NFKNLRSLEICGG---GLTDAG----VKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 394 ~~~~L~~L~l~~~---~~~~~~----~~~l~~~~~L~~L~l~~~ 430 (469)
.-+.|+.|+++++ .+.... .+.+..-++|++|+++.|
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3445555555543 333322 233344566666666655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.20 E-value=0.0044 Score=46.98 Aligned_cols=57 Identities=21% Similarity=0.103 Sum_probs=43.4
Q ss_pred CEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186 375 THLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (469)
Q Consensus 375 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 433 (469)
..++.+++.++ ..+|..+ .++|+.|+|++|.++.+.+..|..+++|+.|+|++|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777776 1233322 457999999999999887777888999999999999743
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.56 E-value=0.012 Score=44.54 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=43.6
Q ss_pred cEEEccCCCCC--HHHHHHHhcC-CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 351 KSLNLDARQIT--DTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 351 ~~L~l~~~~~~--~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
..++.++..++ ..+ . .+ ++|+.|+|++|.++...+..|..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP-~---~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLP-T---AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSC-S---CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCC-C---CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777776 432 1 23 47999999999999988888999999999999998654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.13 E-value=1.8 Score=30.50 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=26.1
Q ss_pred CChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCC
Q 012186 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115 (469)
Q Consensus 69 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 115 (469)
++......|..|.+|+.+.+.. .++.....+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3333335566666666666654 35555555666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.67 E-value=1.2 Score=31.44 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=34.1
Q ss_pred CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
.++.+....|.+|.+|+.+.|.. .++.++...|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 44555556677888888888876 455555667888888888888765
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=31.80 E-value=4.9 Score=38.68 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHHHhccCCCHHhHHhhccCceeEEecCCCC
Q 012186 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP 42 (469)
Q Consensus 2 ~~~e~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (469)
.++|+++ ||.+|+.++++++........|.+|++.++...
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~ 465 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLK 465 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHH
Confidence 3678888 999999999999875544456788888775443
Done!