BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012188
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 216 AIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHP 275
A DL+GFG+S KP D Y +H+ ++ + IE V S ++VA G LA LA + P
Sbjct: 60 APDLIGFGQSGKP-DIAYRFFDHVRYLD-AFIEQRGVTSAYLVAQDWGTALAFHLAARRP 117
Query: 276 GSVKSLTLL 284
V+ L +
Sbjct: 118 DFVRGLAFM 126
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 216 AIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHP 275
A DL+GFG+S KP D Y +H+ ++ + IE V S ++VA G LA LA + P
Sbjct: 60 APDLIGFGQSGKP-DIAYRFFDHVRYLD-AFIEQRGVTSAYLVAQDWGTALAFHLAARRP 117
Query: 276 GSVKSLTLL 284
V+ L +
Sbjct: 118 DFVRGLAFM 126
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 216 AIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHP 275
A DL+GFG+S KP D Y +H+ ++ + IE V S ++VA G LA LA + P
Sbjct: 60 APDLIGFGQSGKP-DIAYRFFDHVRYLD-AFIEQRGVTSAYLVAQDWGTALAFHLAARRP 117
Query: 276 GSVKSLTLL 284
V+ L +
Sbjct: 118 DFVRGLAFM 126
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 212 YRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALA 271
YR+ A D++GFG + +P + Y+ +D I +++ +++ HIV +S G LA+A A
Sbjct: 55 YRVIAPDMVGFGFTDRPENYNYSKDSWVDHI-IGIMDALEIEKAHIVGNSFGGGLAIATA 113
Query: 272 VKHPGSVKSLTLLA 285
+++ V + L+
Sbjct: 114 LRYSERVDRMVLMG 127
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 348 LVTRNRIRTFLLEGFFCHTH----------NAAWH-TLHNIICGTANKLD--GYLDAVRN 394
L R++ EGFF +A W+ + I G +D GY D +
Sbjct: 148 LTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTED 207
Query: 395 HVKCDVN--VFHGEDDELIPVECSYNVQRK-IPRARVKVIEKKDH-ITIVVGRQKTFARE 450
K D+ V HG+DD+++P++ + + IP A +KV E H I +V G ++ F R+
Sbjct: 208 LKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSHGIAMVPGDKEKFNRD 267
Query: 451 LEEI 454
L E
Sbjct: 268 LLEF 271
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 194 AFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPT-DSLYTVREHLDMIEKSVIEPNKV 252
+F + P F++A R+ A DL GFGRS KPT D++YT H + + ++ ++
Sbjct: 59 SFLYRKMLPVFTAAGG---RVVAPDLFGFGRSDKPTDDAVYTFGFHRRSL-LAFLDALQL 114
Query: 253 KSFHIVAHSLGCILALALAVKHPGSVKSLTLL 284
+ +V G IL L L V P V L ++
Sbjct: 115 ERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 212 YRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALA 271
YR+ A D++GFG + +P + Y+ +D I +++ +++ HIV ++ G LA+A A
Sbjct: 55 YRVIAPDMVGFGFTDRPENYNYSKDSWVDHI-IGIMDALEIEKAHIVGNAFGGGLAIATA 113
Query: 272 VKHPGSVKSLTLL--APPYYPVPKGAQASQYVMRKVAPRRVWPLIAFGASMACWYEHISR 329
+++ V + L+ A + V +G A VW + S+ E++
Sbjct: 114 LRYSERVDRMVLMGAAGTRFDVTEGLNA------------VW---GYTPSI----ENMRN 154
Query: 330 TICLLICKNHRVWEFLAKLVTRNRIRTFLLEGFFCHTHNAAWHTLHNIICGTANKLDGYL 389
+ + V + LA+L I+ E F ++ + L
Sbjct: 155 LLDIFAYDRSLVTDELARLRYEASIQPGFQESF------------SSMFPEPRQRWIDAL 202
Query: 390 DAVRNHVKCDVN---VFHGEDDELIPVECSYNVQRKIPRARVKVIEKKDHIT 438
+ +K N + HG +D+++P+ S + I RA++ V + H T
Sbjct: 203 ASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWT 254
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 212 YRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALA 271
YR+ A+D+LGFG++ KP D YT + + + N IV +S+G L ++
Sbjct: 66 YRVIAMDMLGFGKTAKP-DIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVS 124
Query: 272 VKHPGSVKSLTLLA 285
V H V +L L+
Sbjct: 125 VLHSELVNALVLMG 138
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILA 267
+ + YR+ A+D +GF +S KP Y+ ++ L +++E V ++ HS G LA
Sbjct: 70 ADAGYRVIAVDQVGFCKSSKPAHYQYSFQQ-LAANTHALLERLGVARASVIGHSXGGXLA 128
Query: 268 LALAVKHPGSVKSLTLLAP 286
A+ +P V+ L L+ P
Sbjct: 129 TRYALLYPRQVERLVLVNP 147
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQDWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQDWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 172 KFCTC-WSSSSRDTLF----VKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSP 226
+ C C W S + + QG + W E P + YR+ A DL G GRS
Sbjct: 15 QICLCSWGSPEHPVVLCIHGILEQGLA--WQEVALP----LAAQGYRVVAPDLFGHGRSS 68
Query: 227 K-PTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLA 285
+ Y+ L I++ VI+ + +V HS+G +LA A+A P +K L L+
Sbjct: 69 HLEMVTSYSSLTFLAQIDR-VIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVE 127
Query: 286 PP 287
P
Sbjct: 128 LP 129
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQDWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQDWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQDWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSL-YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
++S R+ A D GFG+S KP D YT H + + ++IE +++ +V G L
Sbjct: 71 AESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL-LALIERLDLRNITLVVQXWGGFL 129
Query: 267 ALALAVKHPGSVKSLTLL 284
L L + P K L ++
Sbjct: 130 GLTLPMADPSRFKRLIIM 147
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 197 TETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVK--- 253
T ++ + + + + A DL G+G S +P +V H++ K V+ ++V+
Sbjct: 37 THVMWHKIAPLLANNFTVVATDLRGYGDSSRPA----SVPHHINY-SKRVMAQDQVEVMS 91
Query: 254 -----SFHIVAHSLGCILALALAVKHPGSVKSLTLL 284
F++V H G +A LA+ HP VK L LL
Sbjct: 92 KLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALL 127
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
F C + + GP A N ++ YR+ +D G+G+S DS+
Sbjct: 29 FNDC-GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKS----DSV 83
Query: 233 YTVREHLDM---IEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLA 285
D+ I KSV++ + H++ +S+G ++A +K P V L L+
Sbjct: 84 VNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 210 STYRLFAIDLLGFGRSPKPTDSL----YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCI 265
+ Y + DL G+G S KP + Y+ R + ++ ++ + FH+V H+ G
Sbjct: 50 NEYTVVCADLRGYGGSSKPVGAPDHANYSFRA-MASDQRELMRTLGFERFHLVGHARGGR 108
Query: 266 LALALAVKHPGSVKSLTLL 284
+A+ HP SV SL +L
Sbjct: 109 TGHRMALDHPDSVLSLAVL 127
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 210 STYRLFAIDLLGFGRSPKPTDSL----YTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCI 265
+ Y + DL G+G S KP + Y+ R + ++ ++ + FH+V H G
Sbjct: 50 NEYTVVCADLRGYGGSSKPVGAPDHANYSFRA-MASDQRELMRTLGFERFHLVGHDRGGR 108
Query: 266 LALALAVKHPGSVKSLTLL 284
+A+ HP SV SL +L
Sbjct: 109 TGHRMALDHPDSVLSLAVL 127
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 179 SSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREH 238
S + LF+ S++ + P +A YR A DL+G G S KP D Y +++H
Sbjct: 27 GSGQPVLFLHGNPTSSYLWRNIIPYVVAAG---YRAVAPDLIGXGDSAKP-DIEYRLQDH 82
Query: 239 LDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL---LAPPYYPVP 292
+ + I+ + +V H G ++ A +P V ++ L PP P P
Sbjct: 83 VAYXD-GFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXP 138
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
L G ++W L + + Y++ D G G +P Y++ + +
Sbjct: 19 VLISGLGGSGSYWLPQL-----AVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQXAAELH 73
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSL 281
++++ ++ + +V H+LG ++ LA+ +P SV L
Sbjct: 74 QALVAAG-IEHYAVVGHALGALVGXQLALDYPASVTVL 110
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 208 SKSTYRLFAIDLLGFGRSPK-PTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
+ + YR+ AID G+GRS K Y ++E + + V++ + +V H G +
Sbjct: 57 AGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDV-VGVLDSYGAEQAFVVGHDWGAPV 115
Query: 267 ALALAVKHPGSVKSLTLLAPPYY--------PVPKGA-QASQYVMRKVAPRRVW 311
A A HP + ++ P+ P G + S Y + P RVW
Sbjct: 116 AWTFAWLHPDRCAGVVGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVW 169
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 208 SKSTYRLFAIDLLGFGRSPK-PTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCIL 266
+ + YR+ AID G+GRS K Y ++E + + V++ + +V H G +
Sbjct: 51 AGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDV-VGVLDSYGAEQAFVVGHDWGAPV 109
Query: 267 ALALAVKHPGSVKSLTLLAPPYY--------PVPKGA-QASQYVMRKVAPRRVW 311
A A HP + ++ P+ P G + S Y + P RVW
Sbjct: 110 AWTFAWLHPDRCAGVVGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVW 163
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 23/168 (13%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMR 303
+ IE ++ +V H G L A ++P VK + A +R
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI---------------ACMEFIR 133
Query: 304 KVAPRRVWPLIAFGASMACWYEHISRTICLLICKNHRVWEFLAKLVTR 351
+ WP A A + R L+I +N + + L K V R
Sbjct: 134 PIPTWDEWPEFARELFQAFRTADVGRE--LIIDQNAFIEQVLPKFVVR 179
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILA 267
+++ YR+ A+D+ G+G S P + E L + ++ + + H G +L
Sbjct: 63 AQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLV 122
Query: 268 LALAVKHPGSVKSLTLLAPPYYP 290
+A+ +P V+++ L P+ P
Sbjct: 123 WYMALFYPERVRAVASLNTPFIP 145
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILA 267
+++ YR+ A+D+ G+G S P + E L + ++ + + H G +L
Sbjct: 78 AQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLV 137
Query: 268 LALAVKHPGSVKSLTLLAPPYYP 290
+A+ +P V+++ L P+ P
Sbjct: 138 WYMALFYPERVRAVASLNTPFIP 160
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 32 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 86
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 87 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 32 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 86
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 87 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILA 267
+++ YR+ A+D+ G+G S P + E L + ++ + + H G +L
Sbjct: 282 AQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLV 341
Query: 268 LALAVKHPGSVKSLTLLAPPYYP 290
+A+ +P V+++ L P+ P
Sbjct: 342 WYMALFYPERVRAVASLNTPFIP 364
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 184 TLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE 243
LF+ S++ + P+ + ++R A DL+G G+S KP D Y +H+ ++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAP----SHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLD 89
Query: 244 KSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLT 282
+ IE ++ +V H G L A ++P VK +
Sbjct: 90 -AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 30/239 (12%)
Query: 94 ISDTLYTRPSLVSEASKQTVNELKRLKVDGNVAQSCERIKKGTVRSTFTVNSTI----IE 149
++++L +S+A +Q +E+ K+D + + GT +S N I IE
Sbjct: 84 VNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGT-QSNMNANEVISNRAIE 142
Query: 150 MLQGKIGGQQSHPIPRWSDCDCKFCTCWSSSSRDTLFVKTQGPSAFWTET-LFP---NFS 205
+L GKIG +Q HP + C+ S SS DT ++ + L P N
Sbjct: 143 ILGGKIGSKQVHP---NNHCN------QSQSSNDTFPTVMHIAASLQIQNELIPELTNLK 193
Query: 206 SASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCI 265
+A ++ + F ++ GR+ + T+ + + V N ++ VAHSL +
Sbjct: 194 NALEAKSKEFD-HIVKIGRTHLQDATPLTLGQEFSGYVQQV--ENGIQR---VAHSLKTL 247
Query: 266 LALALAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRK--VAPRRVWPLIAFGASMAC 322
LA G+ L P + V Q S+ K AP R L A A + C
Sbjct: 248 SFLA----QGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVEC 302
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 208 SKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILA 267
+++ +R+ AID+ G+G S P + E L + ++ + + H ++
Sbjct: 280 AQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMV 339
Query: 268 LALAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKV 305
+A+ +P V+++ L P+ P P + V+R +
Sbjct: 340 WNMALFYPERVRAVASLNTPFMP-PDPDVSPMKVIRSI 376
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 252 VKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAP 286
V++ ++V HS G ++A LA +P +K + LLAP
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 93/241 (38%), Gaps = 33/241 (13%)
Query: 201 FPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE----KSVIEPNKVKSFH 256
+ N + YR+ D GF +S D++ + E ++ K +++ + H
Sbjct: 53 YRNVGPFVDAGYRVILKDSPGFNKS----DAV-VMDEQRGLVNARAVKGLMDALDIDRAH 107
Query: 257 IVAHSLGCILALALAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKVAPRRVWPLIAF 316
+V +S+G AL A+++P + L L+ P G S + AP P+
Sbjct: 108 LVGNSMGGATALNFALEYPDRIGKLILMG------PGGLGPSMF-----APM---PMEGI 153
Query: 317 GASMACWYEHISRTICLLICKNHRVWEFLAKLVTRNRIRTFLLEGFFCHTHNAAWHTLHN 376
+ E T+ ++ +V+ + L+T LL+G + H +
Sbjct: 154 KLLFKLYAEPSYETLKQML----QVFLYDQSLITEE-----LLQGRWEAIQRQPEHLKNF 204
Query: 377 IICGTANKLDGY-LDAVRNHVKCDVNVFHGEDDELIPVECSYNVQRKIPRARVKVIEKKD 435
+I L + + A +K + G DD +P++ + I AR+ V K
Sbjct: 205 LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCG 264
Query: 436 H 436
H
Sbjct: 265 H 265
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 195 FWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREH----LDMIEKSVIEPN 250
F + +PN + S S YR +A+D++G P + T ++ LD+ + IE +
Sbjct: 78 FSSTXWYPNIADWS-SKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKS 136
Query: 251 KVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAP 286
H + SLG + ++ P VKS +L+P
Sbjct: 137 -----HXIGLSLGGLHTXNFLLRXPERVKSAAILSP 167
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 33/238 (13%)
Query: 201 FPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLYTVREHLDMIE----KSVIEPNKVKSFH 256
+ N + YR+ D GF +S D++ + E ++ K +++ + H
Sbjct: 53 YRNVGPFVDAGYRVILKDSPGFNKS----DAV-VMDEQRGLVNARAVKGLMDALDIDRAH 107
Query: 257 IVAHSLGCILALALAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKVAPRRVWPLIAF 316
+V +S+G AL A+++P + L L+ P G S + AP P+
Sbjct: 108 LVGNSMGGATALNFALEYPDRIGKLILMG------PGGLGPSMF-----APM---PMEGI 153
Query: 317 GASMACWYEHISRTICLLICKNHRVWEFLAKLVTRNRIRTFLLEGFFCHTHNAAWHTLHN 376
+ E T+ ++ +V+ + L+T LL+G + H +
Sbjct: 154 KLLFKLYAEPSYETLKQML----QVFLYDQSLITEE-----LLQGRWEAIQRQPEHLKNF 204
Query: 377 IICGTANKLDGY-LDAVRNHVKCDVNVFHGEDDELIPVECSYNVQRKIPRARVKVIEK 433
+I L + + A +K + G DD +P++ + I AR+ V K
Sbjct: 205 LISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSK 262
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 218 DLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGS 277
DL+G G+S K + Y + +H + N K V H G LA A +H
Sbjct: 76 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 135
Query: 278 VKSLT 282
+K++
Sbjct: 136 IKAIV 140
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 233 YTVREHLDMIEKSV-IEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAPPYYPV 291
Y E +I + ++P ++ I HS+G AL A+K+PG KS++ AP PV
Sbjct: 123 YVTEELPQLINANFPVDPQRMS---IFGHSMGGHGALICALKNPGKYKSVSAFAPICNPV 179
Query: 292 --PKGAQA 297
P G +A
Sbjct: 180 LCPWGKKA 187
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 218 DLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGS 277
DL+G G+S K + Y + +H + N K V H G LA A +H
Sbjct: 77 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 136
Query: 278 VKSLT 282
+K++
Sbjct: 137 IKAIV 141
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 218 DLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGS 277
DL+G G+S K + Y + +H + N K V H G LA A +H
Sbjct: 76 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 135
Query: 278 VKSLT 282
+K++
Sbjct: 136 IKAIV 140
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 218 DLLGFGRSPKPTDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGS 277
DL+G G+S K + Y + +H + N K V H G LA A +H
Sbjct: 77 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 136
Query: 278 VKSLT 282
+K++
Sbjct: 137 IKAIV 141
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 372 HTLHNIICGTANKLDGYLDAVRNHVK----CDVNV-FHGEDDELIPVECSYNVQRKIPRA 426
HT++ + G + DGY D + N+V CD N F G + Y P
Sbjct: 393 HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGA------LAKMYKHSGGDPIP 446
Query: 427 RVKVIEK--KDHITIVVGRQKT 446
K IEK D + I G T
Sbjct: 447 NFKAIEKITNDEVIIKAGLNST 468
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 372 HTLHNIICGTANKLDGYLDAVRNHVK----CDVNV-FHGEDDELIPVECSYNVQRKIPRA 426
HT++ + G + DGY D + N+V CD N F G + Y P
Sbjct: 393 HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGA------LAKMYKHSGGDPIP 446
Query: 427 RVKVIEK--KDHITIVVGRQKT 446
K IEK D + I G T
Sbjct: 447 NFKAIEKITNDEVIIKAGLNST 468
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV ++ S G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLMGSSYGGALALAYAVKYQDHLKGLIV 127
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV ++ S G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLMGSSYGGALALAYAVKYQDHLKGLIV 127
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV ++ S G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLMGSSYGGALALAYAVKYQDHLKGLIV 127
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 252 VKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAP 286
V++ ++V H+ G ++A LA +P +K + LLAP
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV ++ S G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLMGSSYGGALALAYAVKYQDHLKGLIV 127
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 252 VKSFHIVAHSLGCILALALAVKHPGSVKSLTLLAP 286
V++ ++V H+ G ++A LA +P +K + LLAP
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 208 SKSTYRLFAIDLLGFGRSPKP---------TDSLYTVREHLDMIEKSVI 247
S YR A D GFGRS +P D + + EHLD+ E +++
Sbjct: 43 SSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 208 SKSTYRLFAIDLLGFGRSPKP---------TDSLYTVREHLDMIEKSVI 247
S YR A D GFGRS +P D + + EHLD+ E +++
Sbjct: 43 SSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 208 SKSTYRLFAIDLLGFGRSPKP---------TDSLYTVREHLDMIEKSVI 247
S YR A D GFGRS +P D + + EHLD+ E +++
Sbjct: 43 SSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 208 SKSTYRLFAIDLLGFGRSPKP---------TDSLYTVREHLDMIEKSVI 247
S YR A D GFGRS +P D + + EHLD+ E +++
Sbjct: 43 SSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 208 SKSTYRLFAIDLLGFGRSPKP---------TDSLYTVREHLDMIEKSVI 247
S YR A D GFGRS +P D + + EHLD+ E +++
Sbjct: 43 SSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLKEVTLV 91
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 218 DLLGFGRSPKPTDSLYTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKH 274
D G GRS +P S +T+ E + + + KV ++ S G LALA AVK+
Sbjct: 62 DQFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKV---FLMGSSYGGALALAYAVKY 118
Query: 275 PGSVKSLTL 283
+K L +
Sbjct: 119 QDHLKGLIV 127
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLXTXHGGPGX--SHDYLLSLRDXTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV + S G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLXGSSYGGALALAYAVKYQDHLKGLIV 127
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 173 FCTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSL 232
+ C + + L GP + + +K + D G GRS +P S
Sbjct: 19 YKLCKAPEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSK 76
Query: 233 YTVR---EHLDMIEKSVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTL 283
+T+ E + + + KV ++ + G LALA AVK+ +K L +
Sbjct: 77 FTIDYGVEEAEALRSKLFGNEKV---FLMGSAYGGALALAYAVKYQDHLKGLIV 127
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 399 DVNVFHGEDDELIPVECSYNVQRKIPRARVKVIEKKDH 436
DV VFHG D ++P++ S + + + A + V+++ H
Sbjct: 227 DVLVFHGRQDRIVPLDTSLYLTKHLKHAELVVLDRCGH 264
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 174 CTCWSSSSRDTLFVKTQGPSAFWTETLFPNFSSASKSTYRLFAIDLLGFGRSPKPTDSLY 233
S + + GP A P +++ + + A DL+GFG+S P
Sbjct: 22 LVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFF-VVAPDLIGFGQSEYPETYPG 80
Query: 234 TVREHLDM-IEK--SVIEPNKVKSFHIVAHSLGCILALALAVKHPGSVKSLTLLA 285
+ + M +E+ ++ ++ HIV +S+G + L L V+ P + L+
Sbjct: 81 HIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMG 135
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 23/119 (19%)
Query: 200 LFPNFSSASKSTYRLFAIDLLGFGRSP----KPTDSLYTVREHLDMIEKSVIEPNKVKSF 255
LF FSS K YR F ID L G P K + R+ ++ I K+V E + +
Sbjct: 321 LFDLFSSLRKXGYRYFKIDFLFAGAVPGERKKNITPIQAFRKGIETIRKAVGEDSFI--- 377
Query: 256 HIVAHSLGCILALALAVKHPGSVKSLTLLAPPYYPV------PKGAQASQYVMRKVAPR 308
LGC L AV G V + P P GA A+++ +R R
Sbjct: 378 ------LGCGSPLLPAV---GCVDGXR-IGPDTAPFWGEHIEDNGAPAARWALRNAITR 426
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 214 LFAIDLLGFGRSPKP----TDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALA 269
+FA D +G G+S +D VR+ L ++ + + F ++ HS+G +A+
Sbjct: 90 VFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVF-LLGHSMGGAIAIL 148
Query: 270 LAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKVAPRRVWPLIAFG 317
A + PG + L++P P+ A + + KV V P ++ G
Sbjct: 149 TAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVL-NLVLPNLSLG 195
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 214 LFAIDLLGFGRSPKP----TDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALA 269
+FA D +G G+S +D VR+ L ++ + + F ++ HS+G +A+
Sbjct: 89 VFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVF-LLGHSMGGAIAIL 147
Query: 270 LAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKVAPRRVWPLIAFG 317
A + PG + L++P P+ A + + KV V P ++ G
Sbjct: 148 TAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVL-NLVLPNLSLG 194
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 214 LFAIDLLGFGRSPKP----TDSLYTVREHLDMIEKSVIEPNKVKSFHIVAHSLGCILALA 269
+FA D +G G+S +D VR+ L ++ + + F ++ HS+G +A+
Sbjct: 72 VFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVF-LLGHSMGGAIAIL 130
Query: 270 LAVKHPGSVKSLTLLAPPYYPVPKGAQASQYVMRKV 305
A + PG + L++P P+ A + + KV
Sbjct: 131 TAAERPGHFAGMVLISPLVLANPESATTFKVLAAKV 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,954,857
Number of Sequences: 62578
Number of extensions: 485706
Number of successful extensions: 1229
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 87
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)