Query 012193
Match_columns 468
No_of_seqs 159 out of 211
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 00:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05817 Ribophorin_II: Oligos 100.0 4E-114 8E-119 939.3 42.5 445 2-462 189-636 (636)
2 KOG2447 Oligosaccharyltransfer 100.0 3E-68 6.5E-73 517.1 15.0 270 180-459 13-284 (287)
3 PF01544 CorA: CorA-like Mg2+ 67.3 6.6 0.00014 38.6 4.0 36 392-429 253-290 (292)
4 PF11797 DUF3324: Protein of u 63.9 39 0.00084 30.7 8.1 71 103-175 43-116 (140)
5 PRK09546 zntB zinc transporter 62.9 22 0.00047 36.5 6.9 23 380-405 274-296 (324)
6 PRK15036 hydroxyisourate hydro 60.8 37 0.00081 31.1 7.3 65 103-173 26-91 (137)
7 PRK11085 magnesium/nickel/coba 60.1 20 0.00043 37.2 6.1 36 379-421 265-300 (316)
8 TIGR00383 corA magnesium Mg(2+ 57.7 30 0.00064 35.0 6.8 35 379-420 267-301 (318)
9 TIGR02962 hdxy_isourate hydrox 52.4 65 0.0014 28.5 7.2 64 105-174 2-67 (112)
10 cd05822 TLP_HIUase HIUase (5-h 49.9 68 0.0015 28.4 6.9 65 105-174 2-67 (112)
11 COG0598 CorA Mg2+ and Co2+ tra 47.0 34 0.00074 35.2 5.3 45 380-429 272-316 (322)
12 KOG2447 Oligosaccharyltransfer 42.4 2.6E+02 0.0057 28.8 10.5 108 346-461 163-283 (287)
13 PF08400 phage_tail_N: Prophag 40.0 2E+02 0.0044 26.4 8.6 54 112-173 11-64 (134)
14 PF07608 DUF1571: Protein of u 38.1 1E+02 0.0022 30.5 6.7 41 237-277 13-56 (213)
15 COG2966 Uncharacterized conser 35.7 77 0.0017 31.9 5.7 24 353-376 110-133 (250)
16 PF13620 CarboxypepD_reg: Carb 31.5 1.2E+02 0.0026 23.8 5.2 55 105-172 1-55 (82)
17 PF11837 DUF3357: Domain of un 30.0 17 0.00038 31.7 0.0 40 349-388 6-48 (106)
18 PF05751 FixH: FixH; InterPro 29.9 2.8E+02 0.006 24.6 7.8 60 239-308 69-131 (146)
19 COG4420 Predicted membrane pro 28.7 1.3E+02 0.0027 29.3 5.5 46 376-421 57-103 (191)
20 PF05751 FixH: FixH; InterPro 28.6 2.8E+02 0.0061 24.5 7.7 64 104-175 69-134 (146)
21 PRK12438 hypothetical protein; 28.4 2.7E+02 0.0058 33.6 9.1 99 358-460 161-280 (991)
22 PF05915 DUF872: Eukaryotic pr 27.3 1.6E+02 0.0034 26.3 5.5 31 364-394 37-67 (115)
23 PF03699 UPF0182: Uncharacteri 26.5 2.2E+02 0.0048 33.4 8.0 93 370-463 161-271 (774)
24 KOG3006 Transthyretin and rela 24.8 2.8E+02 0.006 25.3 6.6 65 103-172 20-85 (132)
25 PRK10669 putative cation:proto 24.1 81 0.0017 34.8 3.9 90 368-459 31-140 (558)
26 TIGR03061 pip_yhgE_Nterm YhgE/ 23.9 85 0.0018 28.7 3.4 44 355-404 2-48 (164)
27 PF13571 DUF4133: Domain of un 23.7 1.2E+02 0.0026 26.4 3.9 42 409-450 18-60 (96)
28 PF02369 Big_1: Bacterial Ig-l 22.8 2.2E+02 0.0047 24.1 5.5 64 102-173 23-88 (100)
29 PF11465 Receptor_2B4: Natural 21.9 60 0.0013 28.8 1.9 30 141-172 61-91 (108)
30 PF13715 DUF4480: Domain of un 21.1 2.9E+02 0.0062 22.1 5.7 49 106-172 2-51 (88)
31 PF13828 DUF4190: Domain of un 20.6 93 0.002 24.7 2.5 22 441-462 17-38 (62)
32 PRK00068 hypothetical protein; 20.6 4.8E+02 0.01 31.5 9.3 99 357-459 158-279 (970)
33 PF14782 BBS2_C: Ciliary BBSom 20.4 8.8E+02 0.019 26.5 10.7 80 238-331 113-194 (431)
34 PF00576 Transthyretin: HIUase 20.1 1.8E+02 0.0039 25.7 4.5 64 106-174 3-68 (112)
No 1
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=100.00 E-value=3.9e-114 Score=939.31 Aligned_cols=445 Identities=38% Similarity=0.614 Sum_probs=420.8
Q ss_pred ccccceeeeccccccccccCCcchhhhhhhhhhhccccccCCCCCChhHHHHHhhhhhccCCCCChhhHHHHHHHHHhhh
Q 012193 2 VNDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLGIGIPGDTKNFFDQVDSLACLE 81 (468)
Q Consensus 2 ~~~~~~~~~~~~~~~~~feggLs~Ta~~v~g~~~l~~~~~k~~~i~~~Q~~~~anyllsr~~~~s~~~a~~~~~al~~l~ 81 (468)
+||+.++.||.....-+|||||++||++|+|+|+|+++++|+|+|++||++||||||||||++|++||||++++||++|+
T Consensus 189 ieD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~v~s~k~a~~l~~al~~L~ 268 (636)
T PF05817_consen 189 IEDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRSVQSPKDAFNLLEALKSLS 268 (636)
T ss_pred HHHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecEEEEccCceeccccCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCC
Q 012193 82 NNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPAS 161 (468)
Q Consensus 82 ~n~~~~Pi~~~l~~~~~~~~~~~~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k 161 (468)
+|++++|+|+++++++++.+++|.|+|+|+|+||+|+++++|++++++++.+++++++++++|+++++++.|++|+++.|
T Consensus 269 ~N~~~~Pv~i~l~~~~~~~~~~~~l~v~Vt~vlG~~~~~~~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k 348 (636)
T PF05817_consen 269 SNKFHVPVVISLESSASLSSSKPSLKVRVTNVLGQPLPPLSVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLK 348 (636)
T ss_pred hCCccccEEEEeCCCcccccCCCcEEEEEEeccCCcCCcchhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCC
Confidence 99999999999999999999999999999999999999999999999888888899999999998888889999999999
Q ss_pred CCceeEEEEEEEeecccccceeeeecceeEEEEEEEEEEEEEeeEEEEecCCCCccceeeeeecCCCcceeeecCCcceE
Q 012193 162 FDVGEYIFVFKMLVQDSEQQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKL 241 (468)
Q Consensus 162 ~~~G~Y~~~~~v~~~d~~~~~~~~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~l 241 (468)
+++|+|++++++ . ++ ..+++ .+.+++|||+++|+|++++++|.|+|+++.++++++++++++..+|++|++|++
T Consensus 349 ~~~G~Y~~~~~~-~---~~-~~~~~-~~~~~~vkV~~~v~v~~~~v~v~d~d~~~~~~~~~v~~~~k~~~~l~ad~~~~l 422 (636)
T PF05817_consen 349 PARGYYKFSFSV-S---GD-KRLIG-NTAQLQVKVLGEVSVENAEVSVADSDQSSAPKKTSVDYPSKLSSSLSADSHQKL 422 (636)
T ss_pred CCCceEEEEEEe-c---Cc-cceee-eEEEEEEEEEEEEEEeEEEEEeecCCCCcCcceeeecccccccCCccCCCCceE
Confidence 999999999987 2 12 23333 348899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEc-CCCCCCCceeEEEEEEe-CCceEEEEEec-cCCceEEEEEccccchhhhhccCccEEEEEEEecccccCCc
Q 012193 242 RLSFQMST-PLGNAFKPHQAFLRLRH-ETKVEHTFVVG-SSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSL 318 (468)
Q Consensus 242 ~l~F~l~~-~~g~~~~PhQafl~L~~-~tg~e~~f~vk-~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~~~ 318 (468)
+++|+|++ ++|++++||||||||+| ++|+|++|+++ +++++|++++|.++++++|.++||+|+++|||||+.++||+
T Consensus 423 ~l~f~l~~~~~g~~~~phQafl~l~~~~t~~e~~f~~~~~~~~~~k~~l~~~~~~~~f~~~sg~y~~~LiiGd~~~~~~~ 502 (636)
T PF05817_consen 423 KLKFSLTDKSDGKPKRPHQAFLRLTHQETGLEIIFPAEVDSSGKYKFELDLKDLPKQFLYLSGPYSLSLIIGDASISNPL 502 (636)
T ss_pred EEEEEEEEcCCCCccceeEEEEEEEeCCCCceEEEeeecCCCceEEEEEeccccchhhhhcCCceeEEEEEecCCcCCce
Confidence 99999965 78999999999999999 99999999996 55678999999999999999999999999999999999999
Q ss_pred ceeeeeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 012193 319 LRDIGYVELDLPEPPENASRPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLK 398 (468)
Q Consensus 319 ~~~l~~v~L~~~~~~~~~~~~p~~~~e~~~ry~pkPEI~HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG~Nl~ 398 (468)
.|++|+++|++++.. ++.+++++.||+|||||||+||+||||||++||++|+++|++||++||++|.++|+|++
T Consensus 503 ~~~l~~i~l~~~~~~------~~~~~~~~~ry~~kpEI~H~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl~ 576 (636)
T PF05817_consen 503 NWNLGDISLKFPEDA------PPPKYEKPVRYGPKPEIHHIFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGANLS 576 (636)
T ss_pred eeeeeEEEEecCCcC------CCCCccccccCCCCCceeeecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 999999999998741 22456678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhhheeeeehhHHHHHHHHHh
Q 012193 399 NFPTSAVPATFAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 462 (468)
Q Consensus 399 n~p~s~~p~~~~i~F~~sL~gie~Lf~~Ywl~l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la~~r 462 (468)
|+|+++ ++++||+||+|||++|++||++|||||||+|+++||+|||++|+|+||++++||
T Consensus 577 ~l~~~~----~~~~F~~~l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~a~~r 636 (636)
T PF05817_consen 577 NLPFSP----SAILFHGGLGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSGNRALRELAERR 636 (636)
T ss_pred hCCCCc----hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 999998 699999999999999999999999999999999999999999999999999998
No 2
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-68 Score=517.06 Aligned_cols=270 Identities=41% Similarity=0.696 Sum_probs=252.3
Q ss_pred cceeeeecceeEEEEEEEEEEEEEeeEEEEecCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEcCCCCCCCcee
Q 012193 180 QQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMSTPLGNAFKPHQ 259 (468)
Q Consensus 180 ~~~~~~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~l~l~F~l~~~~g~~~~PhQ 259 (468)
+++.|++.+++.+ |+++++|.++|+++++.|+|++.+++.++++++.|++..+++|++|++.++|++++..|.+.+|||
T Consensus 13 ~~~~~ia~a~~l~-v~a~~~V~v~n~~ig~~d~d~~~a~~~~~vt~~~k~~~vl~ad~~q~l~l~Fql~~~~g~~~kpHQ 91 (287)
T KOG2447|consen 13 CISFYIAYAQALV-VAASGTVGVSNLEIGIVDSDIGIAETVKKVTLPDKLEVVLSADAIQKLNLKFQLTLLTGAPLKPHQ 91 (287)
T ss_pred hhHHHHHHHHHHh-hhhccccccceEEEEeeccccCcccccceeeecCCCceeEeeccchhheeeEEEEecCCCCCccch
Confidence 4456766555555 999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEEEEe-CCceEEEEEeccC-CceEEEEEccccchhhhhccCccEEEEEEEecccccCCcceeeeeEEecCCCCCCCCC
Q 012193 260 AFLRLRH-ETKVEHTFVVGSS-GKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEPPENAS 337 (468)
Q Consensus 260 afl~L~~-~tg~e~~f~vk~s-~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~~~~~~l~~v~L~~~~~~~~~~ 337 (468)
+|+|+.+ ++|.|++|+++.+ ||.|++++|..+.+++|.++||+|++.|+|||+.++||+.|++|+++|+||++.|+++
T Consensus 92 af~rl~~~~~g~e~vfv~~~d~~~v~~~~l~~~~~~~s~~~~sgtyti~L~vgdas~knpl~~~i~~l~l~fp~~~e~~~ 171 (287)
T KOG2447|consen 92 AFFRLENKKTGKEVVFVVEPDQGKVYKLELDTLLQEASFSYLSGTYTIYLLVGDASLKNPLLWNIAQLNLNFPEDHEPKP 171 (287)
T ss_pred heeEeeecCCCeEEEEEEecCCchhHHHHHHHhccccccccCCCcEEEEEEecccccCCcchhhhhheEecCCccccccc
Confidence 9999999 7899999999865 7789999999999999999999999999999999999999999999999999877666
Q ss_pred CCCCCCCCCCCCCCCCCceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHH
Q 012193 338 RPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGI 417 (468)
Q Consensus 338 ~~p~~~~e~~~ry~pkPEI~HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i~F~~sL 417 (468)
+++ .++|||||||+|+||+||||||+++|++|+++|+.|+++|+++|.++|+|++|+|.++. |+++||+||
T Consensus 172 ~~~------~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~---s~~~Fh~gi 242 (287)
T KOG2447|consen 172 KVS------QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPT---STLGFHAGI 242 (287)
T ss_pred ccc------hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCc---hhhhhhhHH
Confidence 532 36899999999999999999999999999999999999999999999999999999974 899999999
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHhhhheeeeehhHHHHHHH
Q 012193 418 AAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 459 (468)
Q Consensus 418 ~gie~Lf~~Ywl~l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la 459 (468)
+|+|+||++||+++||||||+|+++||++||++|||+||...
T Consensus 243 ~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra~~ 284 (287)
T KOG2447|consen 243 AGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRAQG 284 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999544
No 3
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=67.25 E-value=6.6 Score=38.56 Aligned_cols=36 Identities=25% Similarity=0.723 Sum_probs=18.1
Q ss_pred HhcccCCCCCCCCCcchhHHHHH--HHHHHHHHHHHHhhh
Q 012193 392 RLGVNLKNFPTSAVPATFAVIFH--LGIAAVLLLYVLFWL 429 (468)
Q Consensus 392 ~lG~Nl~n~p~s~~p~~~~i~F~--~sL~gie~Lf~~Ywl 429 (468)
..|.|+.++|....+ |...|. .++..+.++...||+
T Consensus 253 ~fGMN~~~~p~~~~~--~g~~~~~~~~~~~~~~~~~~~~~ 290 (292)
T PF01544_consen 253 IFGMNFKGMPELDWP--YGYFFVIILGLMILVAILLYWWF 290 (292)
T ss_dssp STTS-SS---SSSSS--S-SHHH--HHHHHHHHHHHHCCT
T ss_pred HhhCCccCCCccCCc--cHHHHHHHHHHHHHHHHHHHHhe
Confidence 348899999977644 333343 555555566666665
No 4
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=63.92 E-value=39 Score=30.65 Aligned_cols=71 Identities=8% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEE--eccccccCCCCc-eEEEcCCCCCCCceeEEEEEEEee
Q 012193 103 KDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSII--ENQELKFDPQDA-VYFLDDLPASFDVGEYIFVFKMLV 175 (468)
Q Consensus 103 ~~~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~--~~~~l~~~~~~~-~y~l~~~~~k~~~G~Y~~~~~v~~ 175 (468)
.+.|.+++.|.=..-++.++|.+ .++....+ .++. ++..+++.|+.. .|.++.......+|-|++.+.+..
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a-~V~~~~~~-k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDA-KVTKKGSK-KVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEE-EEEECCCC-eEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEc
Confidence 56788888888777787887774 44444333 3444 334466666653 466665556889999999876543
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=62.90 E-value=22 Score=36.49 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCC
Q 012193 380 ILPLFGFIIGLLRLGVNLKNFPTSAV 405 (468)
Q Consensus 380 lapll~Lli~W~~lG~Nl~n~p~s~~ 405 (468)
.+|+-++.+. .|.|++++|....
T Consensus 274 flPlT~IaGi---yGMNf~~mPel~~ 296 (324)
T PRK09546 274 FLPTTFLTGL---FGVNLGGIPGGGW 296 (324)
T ss_pred HHHHHHHHhh---hccccCCCCCcCC
Confidence 4444344333 3889999999863
No 6
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=60.83 E-value=37 Score=31.06 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEE
Q 012193 103 KDSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 173 (468)
Q Consensus 103 ~~~l~v~V~~v-lg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 173 (468)
+..|+.+|-|. -|+|++.+.|.+.+.. ++.-..+... .+++++.+...+.+....+|.|++.|++
T Consensus 26 ~~~Is~HVLDt~~G~PA~gV~V~L~~~~---~~~w~~l~~~---~Td~dGR~~~l~~~~~~~~G~Y~L~F~t 91 (137)
T PRK15036 26 QNILSVHILNQQTGKPAADVTVTLEKKA---DNGWLQLNTA---KTDKDGRIKALWPEQTATTGDYRVVFKT 91 (137)
T ss_pred CCCeEEEEEeCCCCcCCCCCEEEEEEcc---CCceEEEEEE---EECCCCCCccccCcccCCCeeEEEEEEc
Confidence 35799999987 8999999999996532 1111111111 2233345543221233678999999875
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=60.11 E-value=20 Score=37.20 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHH
Q 012193 379 TILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVL 421 (468)
Q Consensus 379 vlapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i~F~~sL~gie 421 (468)
+++|.-++.+. .|.|++++|... |..+|..+++++.
T Consensus 265 if~pptliagi---yGMNf~~mP~~~----~~~g~~~~l~~~~ 300 (316)
T PRK11085 265 VFLPPTLVASS---YGMNFEFMPELK----WSFGYPGAIILMI 300 (316)
T ss_pred HHHHHHHHHhh---cccccCCCCCCC----CcHHHHHHHHHHH
Confidence 34444444333 388999999766 3444554544443
No 8
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=57.73 E-value=30 Score=35.04 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHH
Q 012193 379 TILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAV 420 (468)
Q Consensus 379 vlapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i~F~~sL~gi 420 (468)
+++|+-++-+.| |.|++++|... +..+|...++.+
T Consensus 267 IflP~t~IaGiy---GMNf~~mP~l~----~~~gy~~~l~~m 301 (318)
T TIGR00383 267 IFIPLTFIAGIY---GMNFKFMPELN----WKYGYPAVLIVM 301 (318)
T ss_pred HHHHHHHHHHHH---hCCcccCcccc----chhHHHHHHHHH
Confidence 455554444443 88999999976 334454444443
No 9
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=52.37 E-value=65 Score=28.52 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=37.1
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEE-EcCCCCCCCceeEEEEEEEe
Q 012193 105 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYF-LDDLPASFDVGEYIFVFKML 174 (468)
Q Consensus 105 ~l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~-l~~~~~k~~~G~Y~~~~~v~ 174 (468)
.|..+|-| ..|+|+..+.|.+.+.. .++-..+... ..+.|+ ... .........+|.|++.|.+.
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~~---~~~~~~i~~~--~Tn~DG-R~~~~l~~~~~~~~G~Y~l~F~~g 67 (112)
T TIGR02962 2 PLSTHVLDTTSGKPAAGVPVTLYRLD---GSGWTPLAEG--VTNADG-RCPDLLPEGETLAAGIYKLRFDTG 67 (112)
T ss_pred CceEEEEeCCCCccCCCCEEEEEEec---CCCeEEEEEE--EECCCC-CCcCcccCcccCCCeeEEEEEEhh
Confidence 57788887 78999999999996432 2211112111 122333 332 11123355789999999763
No 10
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=49.90 E-value=68 Score=28.43 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=37.7
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEEe
Q 012193 105 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKML 174 (468)
Q Consensus 105 ~l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~ 174 (468)
.|..+|-| ..|+|...+.|.+.+... .+-..+... ..+.|+-.=.+.........|.|++.|.+.
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~~~---~~~~~i~~~--~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 67 (112)
T cd05822 2 PLSTHVLDTATGKPAAGVAVTLYRLDG---NGWTLLATG--VTNADGRCDDLLPPGAQLAAGTYKLTFDTG 67 (112)
T ss_pred CceeEEEeCCCCcccCCCEEEEEEecC---CCeEEEEEE--EECCCCCccCcccccccCCCeeEEEEEEhh
Confidence 46778877 789999999999965432 111112211 123333221221222467889999999863
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=47.03 E-value=34 Score=35.20 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 012193 380 ILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWL 429 (468)
Q Consensus 380 lapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i~F~~sL~gie~Lf~~Ywl 429 (468)
++|.-++.+.| |.|++++|..-.+ |...+.+++.++..++..+|.
T Consensus 272 flPpTlIagiy---GMNf~~mPel~~~--~Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 272 FLPPTLITGFY---GMNFKGMPELDWP--YGYPIALILMLLLALLLYLYF 316 (322)
T ss_pred HHhhHHHHccc---ccCCCCCcCCCCc--ccHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 8899999987744 333344444444444444443
No 12
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=42.39 E-value=2.6e+02 Score=28.77 Aligned_cols=108 Identities=16% Similarity=-0.012 Sum_probs=72.2
Q ss_pred CCCCCCCCCceeeeccCCCCCCChhhHHHHH----------HH--HHHHHHHHHHHHHHhcccCCCCCCCCCcchhHH-H
Q 012193 346 PYTRYGPKAEITHIFRAPEKRPPQELSLAFL----------VL--TILPLFGFIIGLLRLGVNLKNFPTSAVPATFAV-I 412 (468)
Q Consensus 346 ~~~ry~pkPEI~HiFR~peK~Pp~ivS~~Ft----------~l--vlapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i-~ 412 (468)
-|+++.++|+-. .++=.|-+.|+=+|- .. ++.++.-|+++...++---.|+..-+ +.. -
T Consensus 163 fp~~~e~~~~~~----~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~p----ss~~s 234 (287)
T KOG2447|consen 163 FPEDHEPKPKVS----QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFP----SSPTS 234 (287)
T ss_pred CCcccccccccc----hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----CCCch
Confidence 345677777654 444455555666652 22 24444444444434333333666554 455 9
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHhhhheeeeehhHHHHHHHHH
Q 012193 413 FHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASA 461 (468)
Q Consensus 413 F~~sL~gie~Lf~~Ywl~l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la~~ 461 (468)
+++.++|+-+++++|++-|.=+....-+.+++.+++.++--.=|=++..
T Consensus 235 ~~~Fh~gi~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra~ 283 (287)
T KOG2447|consen 235 TLGFHAGIAGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRAQ 283 (287)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHhh
Confidence 9999999999999999999999999999999999988876555555443
No 13
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=40.03 E-value=2e+02 Score=26.38 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=30.9
Q ss_pred eccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEE
Q 012193 112 TVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 173 (468)
Q Consensus 112 ~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 173 (468)
|=.|+|++..++.+.....+ . ++|..-..-....+++.|.++ ..+|.|.+.+..
T Consensus 11 dg~G~pv~g~~I~L~A~~tS--~-~Vv~~t~as~~t~~~G~Ys~~-----~epG~Y~V~l~~ 64 (134)
T PF08400_consen 11 DGAGKPVPGCTITLKARRTS--S-TVVVGTVASVVTGEAGEYSFD-----VEPGVYRVTLKV 64 (134)
T ss_pred CCCCCcCCCCEEEEEEccCc--h-heEEEEEEEEEcCCCceEEEE-----ecCCeEEEEEEE
Confidence 55689998888887443322 2 222211111122344678885 458999988754
No 14
>PF07608 DUF1571: Protein of unknown function (DUF1571); InterPro: IPR011465 This is a family of paralogous proteins found in Planctomycetacia and Betaproteobacteria.
Probab=38.09 E-value=1e+02 Score=30.53 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.7
Q ss_pred CcceEEEEEEEEcCCCCCCCceeEEEEEEe-C--CceEEEEEec
Q 012193 237 HLQKLRLSFQMSTPLGNAFKPHQAFLRLRH-E--TKVEHTFVVG 277 (468)
Q Consensus 237 ~~~~l~l~F~l~~~~g~~~~PhQafl~L~~-~--tg~e~~f~vk 277 (468)
..|.+.+++.-...+|....|+++++.+-. . .|+|++|+..
T Consensus 13 ~~~~m~~KvR~~~~~~~~~~PlsVY~Kwl~p~~~~GrEvIY~eg 56 (213)
T PF07608_consen 13 EPQTMELKVRHRSNDGRDVQPLSVYLKWLPPGAHAGREVIYVEG 56 (213)
T ss_pred CCcEEEEEEEEecccCCCCCCeEEEEEecCCCCCCCcEEEEecc
Confidence 457778875544467888999999999988 4 7999999754
No 15
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=35.66 E-value=77 Score=31.87 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=16.3
Q ss_pred CCceeeeccCCCCCCChhhHHHHH
Q 012193 353 KAEITHIFRAPEKRPPQELSLAFL 376 (468)
Q Consensus 353 kPEI~HiFR~peK~Pp~ivS~~Ft 376 (468)
+.+..+++++|.+.++..+-+...
T Consensus 110 ~~~l~~i~~~~~~y~~~l~~~~~g 133 (250)
T COG2966 110 HKKLDEIQKQPLRYSRWLVLLMAG 133 (250)
T ss_pred HHHHHHhhhCccccccHHHHHHHH
Confidence 456677888888887776554443
No 16
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=31.51 E-value=1.2e+02 Score=23.84 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=32.1
Q ss_pred ceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 105 SLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 105 ~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
+|+=+|.|--|+|++.++|.+... ... . ... ..+++++.|.+..+ .+|.|.+.++
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~---~~~-~----~~~-~~Td~~G~f~~~~l----~~g~Y~l~v~ 55 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQ---DGG-T----VYT-TTTDSDGRFSFEGL----PPGTYTLRVS 55 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET-----TTT-E----CCE-EE--TTSEEEEEEE-----SEEEEEEEE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEe---eCC-C----EEE-EEECCCceEEEEcc----CCEeEEEEEE
Confidence 366789999999999999998332 111 1 111 23334467998744 3599998753
No 17
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=29.97 E-value=17 Score=31.68 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCceeeeccCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 012193 349 RYGPKAEITHIFRAP---EKRPPQELSLAFLVLTILPLFGFII 388 (468)
Q Consensus 349 ry~pkPEI~HiFR~p---eK~Pp~ivS~~Ft~lvlapll~Lli 388 (468)
.|.|+|+=.|-=+.| ..||.+.+..+|+.++++.+++.|+
T Consensus 6 sY~PLP~~~~~~~~~~~~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 6 SYTPLPDSSESAPGPGGRRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------------------------------
T ss_pred ccCCCCCCCcccCCCCcCcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 488888888777766 7788889999888877666555544
No 18
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=29.95 E-value=2.8e+02 Score=24.61 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=41.1
Q ss_pred ceEEEEEEEEcCCCCCCCceeEEEEEEe--CCceEEEEEeccCC-ceEEEEEccccchhhhhccCccEEEEEE
Q 012193 239 QKLRLSFQMSTPLGNAFKPHQAFLRLRH--ETKVEHTFVVGSSG-KKFEITLDFLGLVEKFFYLSGRYDIQLT 308 (468)
Q Consensus 239 ~~l~l~F~l~~~~g~~~~PhQafl~L~~--~tg~e~~f~vk~s~-k~y~~~ld~~~l~~~f~~~sg~y~v~Li 308 (468)
+.+.+. +++.+|.+..+..+.+.|.+ +.+.+..+..+..+ ..|...++. + .+|.+.+++-
T Consensus 69 ~~~~i~--~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~--~------~~G~W~l~l~ 131 (146)
T PF05751_consen 69 NSLTIR--LTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPL--L------KKGRWYLRLD 131 (146)
T ss_pred CeEEEE--EEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCC--C------CCccEEEEEE
Confidence 445555 65678888999999999988 56666666655333 357766532 2 4799999883
No 19
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.65 E-value=1.3e+02 Score=29.33 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-CCCCCCCcchhHHHHHHHHHHHH
Q 012193 376 LVLTILPLFGFIIGLLRLGVNLK-NFPTSAVPATFAVIFHLGIAAVL 421 (468)
Q Consensus 376 t~lvlapll~Lli~W~~lG~Nl~-n~p~s~~p~~~~i~F~~sL~gie 421 (468)
+...+..+.++|+.|..+..-+. +.|+.+-|+++--+++.++++|.
T Consensus 57 sw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~Aaiq 103 (191)
T COG4420 57 SWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQ 103 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHH
Confidence 45566777788899985443222 46676644443333334444433
No 20
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=28.61 E-value=2.8e+02 Score=24.55 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=39.5
Q ss_pred CceEEEEEeccCCCCCCceEEE--EEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEEee
Q 012193 104 DSLKVKVNTVLGSHAPPLTVTL--VRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLV 175 (468)
Q Consensus 104 ~~l~v~V~~vlg~~l~~~~V~~--~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~ 175 (468)
..+.++++|--|+|+.+.++.+ .+......+-+. .|+. .+++.|..... .+..|.|.+.+++..
T Consensus 69 ~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~-----~l~~-~~~g~y~~~~~--~~~~G~W~l~l~~~~ 134 (146)
T PF05751_consen 69 NSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTL-----TLTE-SAPGVYRAPVP--LLKKGRWYLRLDWEP 134 (146)
T ss_pred CeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeE-----EeeE-CCCceEEEEcC--CCCCccEEEEEEEec
Confidence 7889999999999987765554 333322222111 1221 23357888643 568999999876543
No 21
>PRK12438 hypothetical protein; Provisional
Probab=28.44 E-value=2.7e+02 Score=33.61 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=53.4
Q ss_pred eeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHHHHH--HHhhhc-----
Q 012193 358 HIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLY--VLFWLK----- 430 (468)
Q Consensus 358 HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~p~~~~i~F~~sL~gie~Lf--~~Ywl~----- 430 (468)
++|+=|== -.+++.+|++++++-+..+++-.+.-|+.+.+-.....+ .+-.-++.++|++.|. +-||+.
T Consensus 161 YvF~LPf~--~~l~~~l~~~~~~~~i~~~~~~yl~g~irl~~~~~~~s~--~ar~hL~vl~~~~~ll~A~~ywLdRy~LL 236 (991)
T PRK12438 161 YVFDLPFY--RSVLNWLFVAVVLAFLASLLTHYLFGGLRLTTGRGMLTQ--AARVQLAVFAGAFVLLKAVAYWLDRYELL 236 (991)
T ss_pred EEEecHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccCCH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 56766511 125566666666666655555455545666531111211 2223334455554443 568874
Q ss_pred --------------ccHHHHHHHHHhhhheeeeehhHHHHHHHH
Q 012193 431 --------------LDLFTTLKTLCFLGVFLMVVGHRTLSHLAS 460 (468)
Q Consensus 431 --------------l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la~ 460 (468)
.++--+|+...+|.+++++++--++..+..
T Consensus 237 ~s~~g~~~~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~~~i~~ 280 (991)
T PRK12438 237 SSGRKEPTFTGAGYTDINAVLPAKLILVAIAVLCAVAFFAAIFL 280 (991)
T ss_pred ecCCCCceEecCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134456777778888877777766655444
No 22
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.28 E-value=1.6e+02 Score=26.31 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 012193 364 EKRPPQELSLAFLVLTILPLFGFIIGLLRLG 394 (468)
Q Consensus 364 eK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG 394 (468)
.|.|=+.|.+++.++++-..++.++.+...|
T Consensus 37 ~k~pwK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 37 VKIPWKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555678888888888777766666666555
No 23
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=26.47 E-value=2.2e+02 Score=33.36 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcc-hhHHHHHHHHHHHHHHHHHhhhc-----------------c
Q 012193 370 ELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPA-TFAVIFHLGIAAVLLLYVLFWLK-----------------L 431 (468)
Q Consensus 370 ivS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~p~-~~~i~F~~sL~gie~Lf~~Ywl~-----------------l 431 (468)
+.+.++++++++.+..+++.|..-|+.+........+. -.|+..++++ -+..+-+-||+. .
T Consensus 161 l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~-~~l~~a~~y~L~ry~Ll~s~~g~v~GagYt 239 (774)
T PF03699_consen 161 LQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLAL-FFLLKAVGYWLDRYELLYSQRGVVYGAGYT 239 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHeecCCCeEeCCCce
Confidence 45666677777777777777776666654322222111 1222222221 233444567764 3
Q ss_pred cHHHHHHHHHhhhheeeeehhHHHHHHHHHhh
Q 012193 432 DLFTTLKTLCFLGVFLMVVGHRTLSHLASASA 463 (468)
Q Consensus 432 ~lFqTL~~l~~Lg~~t~l~G~r~Lr~la~~r~ 463 (468)
++--+|+...++++++++++--++-.+.+++.
T Consensus 240 Dv~a~Lp~~~il~~i~~~~A~~~~~~~~~~~~ 271 (774)
T PF03699_consen 240 DVHATLPAYTILAVIALLCAVLFFINIFRRNW 271 (774)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45557888888888888777777766655443
No 24
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=24.83 E-value=2.8e+02 Score=25.27 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=35.4
Q ss_pred CCceEEEEEeccC-CCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 103 KDSLKVKVNTVLG-SHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 103 ~~~l~v~V~~vlg-~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
.+.|..+|-|+.+ .|.....|.+ +....+++ -++-.-.++.+|+.-...-...-.-+|.|+++|.
T Consensus 20 ~~~itahVLd~s~GsPA~gVqV~~---f~~~~~~~--w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~d 85 (132)
T KOG3006|consen 20 GPPITAHVLDISRGSPAAGVQVHL---FILANDDT--WTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFD 85 (132)
T ss_pred CCCcEeEEeecccCCcccceEEEE---EEecCCCc--ccCccccccccCceeecccchhhhccceEEEEEe
Confidence 4899999999875 5555566665 33333321 1111112334444222222223557899999885
No 25
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.10 E-value=81 Score=34.85 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchhHHHHHHH--HHHHHHHHHHh
Q 012193 368 PQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLG--IAAVLLLYVLF 427 (468)
Q Consensus 368 p~ivS~~Ft~lvlapl----------------l~Lli~W~~lG~Nl~--n~p~s~~p~~~~i~F~~s--L~gie~Lf~~Y 427 (468)
|.+++.+..|+++-|. ++++..++..|..++ .+..... ....+...+ +..+.+.+..|
T Consensus 31 P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
T PRK10669 31 SPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKS--IAIPGAIAQIAVATLLGMALSA 108 (558)
T ss_pred CHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777776652 233344445565443 4322211 111111111 22234445667
Q ss_pred hhcccHHHHHHHHHhhhheeeeehhHHHHHHH
Q 012193 428 WLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 459 (468)
Q Consensus 428 wl~l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la 459 (468)
++++++-+.+.+...++.-..-.--|.|++..
T Consensus 109 ~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~ 140 (558)
T PRK10669 109 VLGWSLMTGIVFGLCLSTASTVVLLRALEERQ 140 (558)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999988888777777655555556665543
No 26
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=23.89 E-value=85 Score=28.74 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=22.6
Q ss_pred ceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-Hhc--ccCCCCCCCC
Q 012193 355 EITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLL-RLG--VNLKNFPTSA 404 (468)
Q Consensus 355 EI~HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~-~lG--~Nl~n~p~s~ 404 (468)
|++|++|.|. .+ .+..++++.|++..++.+. ..+ -..+++|-+.
T Consensus 2 E~~~~~r~~~-----~~-~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpvaV 48 (164)
T TIGR03061 2 ELKRLRKNKL-----LR-IALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAV 48 (164)
T ss_pred hHHHhhcCcH-----HH-HHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEEE
Confidence 7788888762 22 2333445567765544443 322 2345665443
No 27
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=23.65 E-value=1.2e+02 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHH-HhhhcccHHHHHHHHHhhhheeeee
Q 012193 409 FAVIFHLGIAAVLLLYV-LFWLKLDLFTTLKTLCFLGVFLMVV 450 (468)
Q Consensus 409 ~~i~F~~sL~gie~Lf~-~Ywl~l~lFqTL~~l~~Lg~~t~l~ 450 (468)
|-..|-+|++|.+.+|+ +|-.|++-+-.+......|...++.
T Consensus 18 Yl~~faGgll~~~il~~iLYi~Gv~~~ici~~~~~~~~~lv~~ 60 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILFVILYIAGVNQWICIGFGVVSGSLLVWQ 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhhhhee
Confidence 77888899999777765 5556999999999888888777664
No 28
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=22.79 E-value=2.2e+02 Score=24.14 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=34.1
Q ss_pred cCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEecc--ccccCCCCceEEEcCCCCCCCceeEEEEEEE
Q 012193 102 KKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQ--ELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 173 (468)
Q Consensus 102 ~~~~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~--~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 173 (468)
+.-.|.++|.|--|+|++...|.. + ...+. .. ++.. .... .+++.++..+. ....|.|.+...+
T Consensus 23 ~~~tltatV~D~~gnpv~g~~V~f-~--~~~~~-~~-l~~~~~~~~T-d~~G~a~~tlt--st~aG~~~VtA~~ 88 (100)
T PF02369_consen 23 DTNTLTATVTDANGNPVPGQPVTF-S--SSSSG-GT-LSPTNTSATT-DSNGIATVTLT--STKAGTYTVTATV 88 (100)
T ss_dssp S-EEEEEEEEETTSEB-TS-EEEE-----EESS-SE-ES-CEE-EEE--TTSEEEEEEE---SS-EEEEEEEEE
T ss_pred CcEEEEEEEEcCCCCCCCCCEEEE-E--EcCCC-cE-EecCccccEE-CCCEEEEEEEE--ecCceEEEEEEEE
Confidence 367899999999999999999987 1 11122 22 3332 1122 23345555554 3367888876543
No 29
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=21.94 E-value=60 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=18.5
Q ss_pred ccccccCCCCceEEEcCCCCCC-CceeEEEEEE
Q 012193 141 NQELKFDPQDAVYFLDDLPASF-DVGEYIFVFK 172 (468)
Q Consensus 141 ~~~l~~~~~~~~y~l~~~~~k~-~~G~Y~~~~~ 172 (468)
+..+.|+.++ +.|.....++ ++|.|.+++.
T Consensus 61 n~r~~F~~en--laLlIkaAq~qDSG~Y~LEvT 91 (108)
T PF11465_consen 61 NNRFNFTSEN--LALLIKAAQPQDSGLYCLEVT 91 (108)
T ss_dssp HHHEEEETTT--TEEEESS-SGGG-EEEEEEEE
T ss_pred cceEeeeccC--ceEEEeecCcccCceEEEEEE
Confidence 3445566654 5666666666 8999998754
No 30
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=21.11 E-value=2.9e+02 Score=22.09 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=31.5
Q ss_pred eEEEEEecc-CCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 106 LKVKVNTVL-GSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 106 l~v~V~~vl-g~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
|+=+|.|-. |+|++.++|.+.... .-+.+++++.|.++ . ..|.|.+.|+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~-------------~~~~Td~~G~F~i~-~----~~g~~~l~is 51 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK-------------KGTVTDENGRFSIK-L----PEGDYTLKIS 51 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc-------------ceEEECCCeEEEEE-E----cCCCeEEEEE
Confidence 455788888 999988988873221 11222344678886 2 2677887764
No 31
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=20.58 E-value=93 Score=24.69 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=19.4
Q ss_pred HhhhheeeeehhHHHHHHHHHh
Q 012193 441 CFLGVFLMVVGHRTLSHLASAS 462 (468)
Q Consensus 441 ~~Lg~~t~l~G~r~Lr~la~~r 462 (468)
.+.+++.++.|+.+++++.+++
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccC
Confidence 6778899999999999998866
No 32
>PRK00068 hypothetical protein; Validated
Probab=20.57 E-value=4.8e+02 Score=31.46 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=49.6
Q ss_pred eeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCCCCCcchhHHHHHHHHHHHH--HHHHHhhhc
Q 012193 357 THIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLG----VNLKNFPTSAVPATFAVIFHLGIAAVL--LLYVLFWLK 430 (468)
Q Consensus 357 ~HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG----~Nl~n~p~s~~p~~~~i~F~~sL~gie--~Lf~~Ywl~ 430 (468)
-++|+=|== -.+++.+|++++++-+..+++-.+.-| .++......... ..-.-+..++|++ +.-+-||+.
T Consensus 158 FY~F~LPf~--~~l~~~l~~~~~~~~i~~~~~~~l~g~~~~~~~l~~~~~~~~~--~ar~hl~~l~~~~~ll~a~~ywL~ 233 (970)
T PRK00068 158 FYAFKLPFY--RSLLSYLLVLLILAFIITLIAHYILGGIRKGIRLAGRKGGISR--FARKQLAVLAGLLMLLKAVGYWLD 233 (970)
T ss_pred EEEEehHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcCCCH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356766511 124556666665555555544444444 555432222211 1222222334433 334558875
Q ss_pred -----------------ccHHHHHHHHHhhhheeeeehhHHHHHHH
Q 012193 431 -----------------LDLFTTLKTLCFLGVFLMVVGHRTLSHLA 459 (468)
Q Consensus 431 -----------------l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la 459 (468)
.++--+|+...+|.+++++++--++-.+.
T Consensus 234 ry~Ll~s~~g~v~GA~YTDv~a~Lpa~~iL~~ia~i~a~~~~~~~~ 279 (970)
T PRK00068 234 RYNLLYSTRGVFTGASYTDINAVLPAKLILLVIAVICAIAVFSSIV 279 (970)
T ss_pred hhhheecCCCEEecCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24455777777777777777666654443
No 33
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=20.42 E-value=8.8e+02 Score=26.47 Aligned_cols=80 Identities=19% Similarity=0.055 Sum_probs=45.4
Q ss_pred cceEEEEEEEEcCCCCCCCceeEEEEEEe--CCceEEEEEeccCCceEEEEEccccchhhhhccCccEEEEEEEeccccc
Q 012193 238 LQKLRLSFQMSTPLGNAFKPHQAFLRLRH--ETKVEHTFVVGSSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVME 315 (468)
Q Consensus 238 ~~~l~l~F~l~~~~g~~~~PhQafl~L~~--~tg~e~~f~vk~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~ 315 (468)
...+.+.|+.+ . -.|-++.|.+.. =.|...++..........+.+... + ...-.+.++.+||..
T Consensus 113 ~~~~eL~vst~--n---dtiIr~vlIfaEglF~gEs~v~~~~~pss~l~ipL~~~---k---d~~vdL~iKv~VG~~--- 178 (431)
T PF14782_consen 113 TGCVELVVSTS--N---DTIIRAVLIFAEGLFEGESHVPSPQNPSSTLRIPLRPP---K---DVPVDLHIKVFVGYP--- 178 (431)
T ss_pred CCcEEEEEEeC--C---CcEEEEEEEEeccccCCccccccCCCCCCeEEEEeeCC---C---CCceEEEEEEEEcCC---
Confidence 45566665443 2 367788888876 125555533222223344444321 1 235568999999976
Q ss_pred CCcceeeeeEEecCCC
Q 012193 316 NSLLRDIGYVELDLPE 331 (468)
Q Consensus 316 ~~~~~~l~~v~L~~~~ 331 (468)
++-.+.+..++..+|.
T Consensus 179 ~s~~~hVfE~t~~LPr 194 (431)
T PF14782_consen 179 NSNQFHVFEVTRQLPR 194 (431)
T ss_pred CCceEEEEeccccCCc
Confidence 3556777766666663
No 34
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=20.06 E-value=1.8e+02 Score=25.72 Aligned_cols=64 Identities=22% Similarity=0.153 Sum_probs=35.3
Q ss_pred eEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceE-EEcCCCCCCCceeEEEEEEEe
Q 012193 106 LKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVY-FLDDLPASFDVGEYIFVFKML 174 (468)
Q Consensus 106 l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y-~l~~~~~k~~~G~Y~~~~~v~ 174 (468)
|..+|-| ..|+|+..+.|.+.+... +.+-..+... ..+.| +.. ..........+|.|++.|.+.
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~--~~~~~~l~~~--~Td~D-GR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDS--DGSWTLLAEG--VTDAD-GRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEET--TSCEEEEEEE--EBETT-SEESSTSSETTTS-SEEEEEEEEHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecC--CCCcEEEEEE--EECCC-CcccccccccccccceEEEEEEEHH
Confidence 5566664 579999999999966643 2222223222 12333 333 223334577899999999864
Done!