Query 012193
Match_columns 468
No_of_seqs 159 out of 211
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 62.2 9.8 0.00033 37.7 5.8 14 393-406 299-312 (339)
2 4ank_A Transthyretin; hormone 52.9 19 0.00066 32.1 5.4 68 101-173 27-95 (147)
3 1qfh_A Protein (gelation facto 37.8 2.3E+02 0.0078 25.5 12.0 56 258-322 135-192 (212)
4 1wlh_A Gelation factor; ABP-12 36.8 2.3E+02 0.008 27.0 10.9 56 258-322 234-291 (311)
5 2iub_A CORA, divalent cation t 36.0 18 0.00061 36.2 2.7 12 393-404 323-334 (363)
6 3rgh_A Filamin-A; cell adhesio 23.2 2.9E+02 0.0098 22.0 8.2 54 259-320 40-95 (100)
7 1cwv_A Invasin; integrin-bindi 16.4 8.2E+02 0.028 25.3 11.1 114 105-256 127-240 (492)
8 3d33_A Domain of unknown funct 16.2 4.7E+02 0.016 21.7 7.8 67 238-327 37-107 (108)
9 1kx2_A Mono-heme C-type cytoch 16.0 72 0.0025 24.1 2.2 18 45-62 64-81 (81)
10 2g2n_A Transthyretin-like prot 15.5 2.5E+02 0.0084 23.8 5.5 65 103-174 3-69 (114)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=62.21 E-value=9.8 Score=37.71 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.4
Q ss_pred hcccCCCCCCCCCc
Q 012193 393 LGVNLKNFPTSAVP 406 (468)
Q Consensus 393 lG~Nl~n~p~s~~p 406 (468)
.|.|+.++|....+
T Consensus 299 yGMNf~~mPel~~~ 312 (339)
T 4ev6_A 299 YGMNFSYLPLANNP 312 (339)
T ss_dssp TTCCCSCCTTSSCT
T ss_pred ccCcCCCCCCccCc
Confidence 38999999987744
No 2
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=52.89 E-value=19 Score=32.12 Aligned_cols=68 Identities=22% Similarity=0.114 Sum_probs=39.3
Q ss_pred ccCCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEE
Q 012193 101 TKKDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 173 (468)
Q Consensus 101 ~~~~~l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 173 (468)
..+++|..+|-| ..|.|...+.|.+.+... ++.-..+... +.+.|+ .-.-.....+...|.|++.|.+
T Consensus 27 ~sk~PLTtHVLDt~~G~PA~gv~V~L~~~~~--~~~~~~l~~~--~Td~DG-R~~~ll~~~~~~~G~Y~L~F~t 95 (147)
T 4ank_A 27 ESKCPLMVKVLDAVRGSPAINVAVHVFRKAA--DDTWEPFASG--KTSESG-ELHGLTTEEEFVEGIYKVEIDT 95 (147)
T ss_dssp ---CCEEEEEEETTTTEECCSCEEEEEEECT--TSCEEEEEEE--ECCTTS-EECCSCCTTTCCSEEEEEEECH
T ss_pred CCCCCeEEEEEeCCCCcCCCCCEEEEEEECC--CCCeEEEEEE--EeCCCC-CCCCCCCccccCCceEEEEEEH
Confidence 347889999998 789999999999965421 1111112221 123333 3211112346678999999875
No 3
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=37.84 E-value=2.3e+02 Score=25.55 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=33.1
Q ss_pred eeEEEEEEeCCceEEEEEeccCCc-eEEEEEccccchhhhhccCccEEEEEEEecccccC-Ccceee
Q 012193 258 HQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLRDI 322 (468)
Q Consensus 258 hQafl~L~~~tg~e~~f~vk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~~l 322 (468)
....+.+....+ .+.-.+.+.+. .|.++... ...|.|.+++-+++..+.. ||...+
T Consensus 135 ~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p--------~~~G~y~v~V~~~g~~I~gSPF~v~V 192 (212)
T 1qfh_A 135 DKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFKQVL 192 (212)
T ss_dssp CCEEEEEEECCS-EEEEEEEECSSSEEEEEEEE--------ESSEEEEEEEEETTEECBTCSEEEEE
T ss_pred CcEEEEEECCCC-ceeeEEEECCCCEEEEEEEc--------CCCEEEEEEEEECCEECCCCCeEEEE
Confidence 445555666445 33333444433 46665521 2479999999999888764 555444
No 4
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=36.76 E-value=2.3e+02 Score=26.99 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=34.4
Q ss_pred eeEEEEEEeCCceEEEEEeccCCc-eEEEEEccccchhhhhccCccEEEEEEEecccccC-Ccceee
Q 012193 258 HQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLRDI 322 (468)
Q Consensus 258 hQafl~L~~~tg~e~~f~vk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~~l 322 (468)
....+.+...+| +....+.+.+. .|.++.-. ...|.|.+++-+++..+.. ||.-.+
T Consensus 234 ~~l~v~i~~p~g-~~~~~v~d~~~G~y~v~y~p--------~~~G~y~i~V~~~g~~I~gsPf~v~v 291 (311)
T 1wlh_A 234 DKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFKQVL 291 (311)
T ss_dssp SCEEEEEESCCS-EEEEEEEECSSSEEEEEEEE--------ECSEEEEEEEEETTEECTTCSEEEEE
T ss_pred CcEEEEEECCCC-CceeEEEECCCCEEEEEEEC--------CCCEeEEEEEEECCEECCCCCEEEEE
Confidence 345556666556 55444554433 46665521 2479999999999988864 555433
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=36.01 E-value=18 Score=36.20 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=1.3
Q ss_pred hcccCCCCCCCC
Q 012193 393 LGVNLKNFPTSA 404 (468)
Q Consensus 393 lG~Nl~n~p~s~ 404 (468)
.|.|+.++|...
T Consensus 323 yGMNf~~mPel~ 334 (363)
T 2iub_A 323 YGMNFEYMPELR 334 (363)
T ss_dssp CC----------
T ss_pred hcccCCCCCccc
Confidence 488999999866
No 6
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=23.17 E-value=2.9e+02 Score=22.04 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=31.0
Q ss_pred eEEEEEEeCCceEEEEEeccCCc-eEEEEEccccchhhhhccCccEEEEEEEecccccC-Ccce
Q 012193 259 QAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLR 320 (468)
Q Consensus 259 Qafl~L~~~tg~e~~f~vk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~ 320 (468)
...+.+.+..+.++.-.+.+.+. .|.++... ...|.|.+++.+++..+.. ||..
T Consensus 40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p--------~~~G~y~i~V~~~g~~V~gSPf~v 95 (100)
T 3rgh_A 40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIP--------LCPGAYTVTIKYGGQPVPNFPSKL 95 (100)
T ss_dssp CEEEEEECTTSCBCEEEEEECSSSEEEEEEEC--------CSSEEEEEEEEETTEECTTCSEEE
T ss_pred eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEe--------CCCeeEEEEEEECCEECCCCCEEE
Confidence 34445555444443333455443 46665521 2468899999999877753 5543
No 7
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=16.43 E-value=8.2e+02 Score=25.28 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred ceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEEEeecccccceee
Q 012193 105 SLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQDSEQQTVY 184 (468)
Q Consensus 105 ~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~~d~~~~~~~ 184 (468)
.+.++|.|-.|.|++..+|.. ..+.... .-..+..+..|++.+.. ...|.|.+..++.-...
T Consensus 127 tltatv~Da~GNpv~g~~Vtf-----~~~~g~~-----~~~Ttd~~G~at~tlts--~~aG~~tVtA~v~g~~~------ 188 (492)
T 1cwv_A 127 TITLELKDTYGDPQAGANVAF-----DTTLGNM-----GVITDHNDGTYSAPLTS--TTLGVATVTVKVDGAAF------ 188 (492)
T ss_dssp EEEEECBBTTSCBCCSCCEEE-----EESSSEE-----CCCEECSSSEEEEEEEC--SSCEEEEEEEEETTEEE------
T ss_pred EEEEEEEcCCCCCcCCcEEEE-----EECCCce-----eeeEecCCcEEEEEEEc--cCceEEEEEEEECCccc------
Q ss_pred eecceeEEEEEEEEEEEEEeeEEEEecCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEcCCCCCCC
Q 012193 185 ATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMSTPLGNAFK 256 (468)
Q Consensus 185 ~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~l~l~F~l~~~~g~~~~ 256 (468)
......|.+.. +.......-.+... +..+.+|..+...++..|+|..|.+..
T Consensus 189 ---~~~s~~vtf~a--------------~~~~~~~~~~l~v~---~~~~~A~g~~~~tltatv~D~~GNpv~ 240 (492)
T 1cwv_A 189 ---SVPSVTVNFTA--------------DPIPDAGRSSFTVS---TPDILADGTMSSTLSFVPVDKNGHFIS 240 (492)
T ss_dssp ---EEEEEEEEEEC--------------CSSCCTTTCEEEES---CSEEETTSCCCEEEEEECBCTTSCBCC
T ss_pred ---cccceEEEEEc--------------cCccccceeeEeec---ccceeeCCcceEEEEEEEECCCCCCcc
No 8
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=16.16 E-value=4.7e+02 Score=21.71 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=43.3
Q ss_pred cceEEEEEEEEcCCCCCCCceeEEEEEEe-CCceEEEEE--e-ccCCceEEEEEccccchhhhhccCccEEEEEEEeccc
Q 012193 238 LQKLRLSFQMSTPLGNAFKPHQAFLRLRH-ETKVEHTFV--V-GSSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAV 313 (468)
Q Consensus 238 ~~~l~l~F~l~~~~g~~~~PhQafl~L~~-~tg~e~~f~--v-k~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~ 313 (468)
.+.|.+.|. . .-.++.+++.+ ++| +++|. + .+.+..+.++++ .. .+|.|.+.+.-+
T Consensus 37 ~~~L~I~F~--~------~~~~vtItI~~~~tG-~iVY~~~v~~~~~~~~~I~L~--~~------~~G~Y~L~i~~~--- 96 (108)
T 3d33_A 37 GYLLTLKNA--S------PDRDMTIRITDMAKG-GVVYENDIPEVQSAYITISIA--NF------PAEEYKLEITGT--- 96 (108)
T ss_dssp TTEEEEEES--S------CCSEEEEEEEETTTC-CEEEEEEECGGGTTEEEEECT--TS------CSEEEEEEEEEE---
T ss_pred CCEEEEEEC--C------cCCCEEEEEEECCCC-cEEEEEeecCCCCcEEEEEcC--Cc------cCceEEEEEEeC---
Confidence 457888872 1 23489999996 555 44574 3 233456676664 22 489999999988
Q ss_pred ccCCcceeeeeEEe
Q 012193 314 MENSLLRDIGYVEL 327 (468)
Q Consensus 314 ~~~~~~~~l~~v~L 327 (468)
.-.|-.|+++|
T Consensus 97 ---~~~~l~G~F~i 107 (108)
T 3d33_A 97 ---PSGHLTGYFTK 107 (108)
T ss_dssp ---SSCEEEEEEEE
T ss_pred ---CCCEEEEEEEe
Confidence 34666676665
No 9
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=16.04 E-value=72 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCChhHHHHHhhhhhccC
Q 012193 45 NLTGDKILGIAKFFLGIG 62 (468)
Q Consensus 45 ~i~~~Q~~~~anyllsr~ 62 (468)
.|+++|+..+++|+.+.+
T Consensus 64 ~Lsd~ei~~l~~Yi~~~~ 81 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSKAK 81 (81)
T ss_dssp SCCHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 699999999999998764
No 10
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=15.52 E-value=2.5e+02 Score=23.82 Aligned_cols=65 Identities=23% Similarity=0.228 Sum_probs=37.7
Q ss_pred CCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcC-CCCCCCceeEEEEEEEe
Q 012193 103 KDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDD-LPASFDVGEYIFVFKML 174 (468)
Q Consensus 103 ~~~l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~-~~~k~~~G~Y~~~~~v~ 174 (468)
+..|..+|-| ..|.|...+.|.+.+. ..++-..+... ..+.|+ .- -++ .......|.|++.|.++
T Consensus 3 ~~~lstHVLDt~~G~PAagv~V~L~~~---~~~~~~~l~~~--~Tn~DG-R~-~~l~~~~~~~~G~Y~l~F~tg 69 (114)
T 2g2n_A 3 QNILSVHILNQQTGKPAADVTVTLEKK---ADNGWLQLNTA--KTDKDG-RI-KALWPEQTATTGDYRVVFKTG 69 (114)
T ss_dssp -CCEEEEEEETTTTEECCSCEEEEEEE---CSSSEEEEEEE--ECCTTS-EE-SCCSCSSCCCSEEEEEEECHH
T ss_pred CCCeEEEEecCCCcCCCCCCEEEEEEe---CCCCcEEEEEE--ecCCCC-cc-ccccCCCCCCceEEEEEEEhh
Confidence 4678888886 5799999999999654 22211112111 123333 22 112 23456789999998753
Done!