Query 012193
Match_columns 468
No_of_seqs 159 out of 211
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 04:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 44.2 6.7 0.00049 27.9 2.7 26 378-406 14-39 (64)
2 d1vlfn1 b.3.5.1 (N:196-274) Tr 42.9 14 0.00099 27.3 4.5 44 115-172 12-55 (79)
3 d1cora_ a.3.1.1 (A:) Cytochrom 34.5 8.2 0.0006 27.9 1.9 18 45-62 65-82 (82)
4 d351ca_ a.3.1.1 (A:) Cytochrom 30.7 11 0.00079 27.3 2.0 18 45-62 65-82 (82)
5 d1f86a_ b.3.4.1 (A:) Transthyr 30.4 34 0.0025 27.0 5.2 63 105-173 2-66 (115)
6 d1uwya1 b.3.2.1 (A:297-403) Ca 27.1 99 0.0072 22.9 7.5 50 107-172 3-52 (107)
7 d1wiua_ b.1.1.4 (A:) Twitchin 25.2 1.1E+02 0.0077 21.5 7.5 20 152-171 57-77 (93)
8 d1cwva1 b.1.14.1 (A:503-596) I 24.7 1.1E+02 0.0079 22.7 7.2 62 102-172 18-79 (94)
9 d1c75a_ a.3.1.1 (A:) Cytochrom 17.5 29 0.0021 24.5 2.1 18 45-62 54-71 (71)
10 d1c6sa_ a.3.1.1 (A:) Cytochrom 16.5 24 0.0017 25.3 1.4 18 45-62 64-81 (87)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=44.23 E-value=6.7 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCc
Q 012193 378 LTILPLFGFIIGLLRLGVNLKNFPTSAVP 406 (468)
Q Consensus 378 lvlapll~Lli~W~~lG~Nl~n~p~s~~p 406 (468)
++.+|+-++-. ..|.|+.++|....+
T Consensus 14 ~iflP~t~i~g---ifGMN~~~~P~~~~~ 39 (64)
T d2iuba2 14 TIFMPLTFIAG---IYGMNFEYMPELRWK 39 (64)
T ss_dssp HHHHHHHHHTT---SCC------------
T ss_pred HHHHHHHHHHh---hhccCCCCCCCCCcc
Confidence 34555544432 348899999987644
No 2
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=42.88 E-value=14 Score=27.33 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=28.6
Q ss_pred CCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 115 GSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 115 g~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
|+|++.++|.+.+ ++ ..+.. +.++++..|.++ +..+|.|.+.++
T Consensus 12 G~~v~gA~V~L~~-----~~-~~v~~----t~Td~~G~F~f~----~l~~G~Y~l~is 55 (79)
T d1vlfn1 12 GDCFEGAKVVLKS-----GG-KEVAS----AETNFFGEFKFD----ALDNGEYTVEID 55 (79)
T ss_dssp TEECTTCEEEEEE-----TT-EEEEE----EECCTTSEEEEE----EECSEEEEEEEE
T ss_pred CccccccEEEEEC-----CC-CeEEe----eEECCCCcEEEE----ecCCCCEEEEEE
Confidence 9999999999832 12 22111 123455689996 446899999764
No 3
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=34.47 E-value=8.2 Score=27.95 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=16.4
Q ss_pred CCChhHHHHHhhhhhccC
Q 012193 45 NLTGDKILGIAKFFLGIG 62 (468)
Q Consensus 45 ~i~~~Q~~~~anyllsr~ 62 (468)
.|+.||+..+++|++|.|
T Consensus 65 ~lsdeei~~la~Yi~SlK 82 (82)
T d1cora_ 65 PVTEEEAKILAEWILSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999865
No 4
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.74 E-value=11 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.3
Q ss_pred CCChhHHHHHhhhhhccC
Q 012193 45 NLTGDKILGIAKFFLGIG 62 (468)
Q Consensus 45 ~i~~~Q~~~~anyllsr~ 62 (468)
.|+++|+-.+++|++|.|
T Consensus 65 ~lsd~ei~~la~Yi~SlK 82 (82)
T d351ca_ 65 AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999865
No 5
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.43 E-value=34 Score=27.01 Aligned_cols=63 Identities=22% Similarity=0.149 Sum_probs=36.6
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCC-CCCCCceeEEEEEEE
Q 012193 105 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDL-PASFDVGEYIFVFKM 173 (468)
Q Consensus 105 ~l~v~V~~-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~-~~k~~~G~Y~~~~~v 173 (468)
+|..+|-| ..|.|+..+.|.+.+... +..-..+... ..|.| +... ++. ..+..+|.|++.|.+
T Consensus 2 PiStHVLDt~~G~PA~gv~V~L~~~~~--~~~~~~i~~~--~Td~d-GRi~-~~~~~~~~~~G~Y~l~F~~ 66 (115)
T d1f86a_ 2 PLMVKVLDAVRGSPAINVAVHVFRKAA--DDTWEPFASG--KTSES-GELH-GLTTEEEFVEGIYKVEIDT 66 (115)
T ss_dssp CEEEEEEETTTTEECTTCEEEEEEECT--TSCEEEEEEE--ECCTT-SEEC-CSCCTTTCCSEEEEEEECH
T ss_pred CceEEEecCCCCCCCCCCEEEEEEECC--CCCEEEEEEE--EeCCC-Cccc-CccCcccCCCeEEEEEEEH
Confidence 46677777 789999999999855421 1111222222 13333 3332 222 346688999999875
No 6
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.13 E-value=99 Score=22.95 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=30.6
Q ss_pred EEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 107 KVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 107 ~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
+=+|+|--|+|++.++|.+. ..+. ... ..++++..|.++ ...|.|.+.++
T Consensus 3 ~G~V~D~~g~pi~~A~V~i~------~~~~----~~~-~~td~~G~f~~~-----~~~g~Y~l~vs 52 (107)
T d1uwya1 3 KGQVFDQNGNPLPNVIVEVQ------DRKH----ICP-YRTNKYGEYYLL-----LLPGSYIINVT 52 (107)
T ss_dssp EEEEECTTSCBCCSCEEEET------TCCC----SSC-CBCCTTCEEEEC-----CCSEEEEEEEE
T ss_pred EEEEECCCCCCcCcEEEEEE------cccc----cce-eecchhheeeee-----cCCccEEEEEE
Confidence 34688999999988999871 1111 011 122334567663 34699998765
No 7
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=25.17 E-value=1.1e+02 Score=21.54 Aligned_cols=20 Identities=20% Similarity=0.080 Sum_probs=13.0
Q ss_pred eEEEcCCCCC-CCceeEEEEE
Q 012193 152 VYFLDDLPAS-FDVGEYIFVF 171 (468)
Q Consensus 152 ~y~l~~~~~k-~~~G~Y~~~~ 171 (468)
.+.|...+.. .+.|.|+...
T Consensus 57 ~~~L~I~~~~~~D~G~Y~c~a 77 (93)
T d1wiua_ 57 TTSIFFPSAKRADSGNYKLKV 77 (93)
T ss_dssp EEEEECTTBCGGGCEEEEEEE
T ss_pred ceeeccccccccccEEEEEEE
Confidence 4555555533 4899999864
No 8
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=24.65 E-value=1.1e+02 Score=22.73 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=38.4
Q ss_pred cCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCCCCceeEEEEEE
Q 012193 102 KKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 172 (468)
Q Consensus 102 ~~~~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 172 (468)
....+.+.|.|-.|.|++...|... .. .... ++... ..+.++..++..+. ....|.|.+...
T Consensus 18 d~~t~tatv~D~~gnpv~g~~V~f~----~~-~~~~-~~~~~-~~Td~~G~a~v~lt--st~aG~~~VtAt 79 (94)
T d1cwva1 18 TAITVEFTVADFEGKPLAGQEVVIT----TN-NGAL-PNKIT-EKTDANGVARIALT--NTTDGVTVVTAE 79 (94)
T ss_dssp SCEEEEEEEECTTSCBCCSCEEEEE----CC-TTCB-SCEEE-EECCTTSEEEEEEB--CSSCEEEEEEEE
T ss_pred ccEEEEEEEEcCCCCCcCCCEEEEE----EC-CCcE-Eecce-eEECCCEEEEEEEE--eCCceEEEEEEE
Confidence 3578999999999999988988862 22 2222 22221 22334456777664 345688777643
No 9
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}
Probab=17.47 E-value=29 Score=24.47 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=16.3
Q ss_pred CCChhHHHHHhhhhhccC
Q 012193 45 NLTGDKILGIAKFFLGIG 62 (468)
Q Consensus 45 ~i~~~Q~~~~anyllsr~ 62 (468)
.|+.||+..+++||.+.|
T Consensus 54 ~Ls~~ei~~i~~Yl~~~K 71 (71)
T d1c75a_ 54 IAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp SSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 499999999999999875
No 10
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=16.46 E-value=24 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=16.1
Q ss_pred CCChhHHHHHhhhhhccC
Q 012193 45 NLTGDKILGIAKFFLGIG 62 (468)
Q Consensus 45 ~i~~~Q~~~~anyllsr~ 62 (468)
.|+++|+..+++|++++.
T Consensus 64 ~Ls~~ei~~v~aYi~~~a 81 (87)
T d1c6sa_ 64 RLTDEQIQDVAAYVLDQA 81 (87)
T ss_dssp TSCSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 499999999999999854
Done!