BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012194
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/478 (28%), Positives = 233/478 (48%), Gaps = 32/478 (6%)
Query: 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFXXXXXXXXXXXXX----XXX 67
R H +++ YP QGHINPL + AK L +G +T V T +
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 68 XXXXXXDGYD--QGGSAQAESIEAYLEKFWQIGPRSLCELVEKMNGS--VVPVDCIVYDS 123
DG +G ++ + + + + CEL+ ++N S V PV C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 124 FLPWALDVAKKFGLVGAAFLTQS-CAVDCIYYH---VNKGXXXXXXXXXXXX-------- 171
+ + + A++F L + + S C++ + + V +G
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 172 -XXGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWL 230
G+ +D+ F+ + + ++ D ++K +L NTF ELE +V L
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVA-DRVNKDTTILLNTFNELESDVINAL 245
Query: 231 GK-LWSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGS 289
+ S+ IGP L Q+ +++K D E C+ WL + GSVVYV+FGS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSVVYVNFGS 304
Query: 290 YAPLKVEEMEELAWGLKATNQYFLWVVRES----EQAKLPENFSDETSQKGLVVNWCPQL 345
+ E++ E AWGL + FLW++R F++E + +GL+ +WCPQ
Sbjct: 305 TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD 364
Query: 346 EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADE 405
+VL H + G FLTHCGWNST E++ GVPM+ P ++DQ T+ ++I + W++G+++ +
Sbjct: 365 KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN- 423
Query: 406 KGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463
V+RE +A I+E++ G++GK+++Q A + A+E GG S N++ + +++
Sbjct: 424 ---VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 196/404 (48%), Gaps = 40/404 (9%)
Query: 74 DGYDQGGSAQAESIEAYLEKFWQIGPRSLCE-LVEKMNGSVVPVDCIVYDSFLPWALDVA 132
+GY G Q + +E F + P S + +V + + PV C+V D+F+ +A D+A
Sbjct: 75 EGYVFAGRPQED-----IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMA 129
Query: 133 KKFGLV-------GAAFLTQSCAVDCIYYHVNKGXXXXXXXXXXXXXXGMPPLEPQDMPS 185
+ G+ G L+ +D I + GM + +D+
Sbjct: 130 AEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQE 189
Query: 186 FVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWL-GKLWSLKTIGP--- 241
+ G+ ++ ++ + KA V N+F EL++ + L KL + IGP
Sbjct: 190 GIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNL 248
Query: 242 -TVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEE 300
T P + P+ C++WL +R SVVY+SFG+ E+
Sbjct: 249 ITPPPVV-----------------PNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVA 291
Query: 301 LAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHC 360
L+ L+A+ F+W +R+ + LPE F ++T G+VV W PQ EVLAHEA G F+THC
Sbjct: 292 LSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHC 351
Query: 361 GWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420
GWNS E+++ GVP++ P + DQ NG+ + DV ++G+++ E G+ + + C +
Sbjct: 352 GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQ 408
Query: 421 ILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464
IL E+GK++R+N A AV GSS +N V +L+S
Sbjct: 409 ILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV-DLVS 451
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 208/476 (43%), Gaps = 58/476 (12%)
Query: 15 HCLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTT----YFXXXXXXXXXXXXXXXXXX 69
H ++ P GH+ PL++FAKRL H GL VT V
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 70 XXXXDGYDQGGSAQAESIEAYLEKFWQIGPRSLCELVEKMN----GSVVPVDCIVYDSFL 125
D D S + ES + RS EL + + G +P +V D F
Sbjct: 68 LPPVDLTDLSSSTRIES------RISLTVTRSNPELRKVFDSFVEGGRLPT-ALVVDLFG 120
Query: 126 PWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGXXXXXXXXXXXXXXGMPPLEPQDMPS 185
A DVA +F + F + V + H+ K EP +P
Sbjct: 121 TDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELT-------EPLMLPG 173
Query: 186 FVYDLGSY---PA--VSDMVVKYQFDNIDK---ADWVLCNTFYELEEEVAEWLGKLWSLK 237
V G PA D K+ N + A+ +L NTF+ELE + +L+
Sbjct: 174 CVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNA------IKALQ 227
Query: 238 TIGPTVPSLYLDKQLEDDKDYGFSMFKPDNES-CIKWLNDRAKGSVVYVSFGSYAPLKVE 296
G P +Y L + G K ES C+KWL+++ GSV+YVSFGS L E
Sbjct: 228 EPGLDKPPVYPVGPL---VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCE 284
Query: 297 EMEELAWGLKATNQYFLWVVRESEQAK----------------LPENFSDETSQKGLVVN 340
++ ELA GL + Q FLWV+R LP F + T ++G V+
Sbjct: 285 QLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIP 344
Query: 341 -WCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGL 399
W PQ +VLAH + G FLTHCGWNST+E++ G+P++A P +++Q N + + + L
Sbjct: 345 FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL 404
Query: 400 KVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNI 455
+ A + G+VRRE +A + ++EGE GK +R + A + G+S K +
Sbjct: 405 RPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 121/486 (24%), Positives = 194/486 (39%), Gaps = 54/486 (11%)
Query: 1 MENIEKKAASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFXXXXXXXXX 60
M + + L+H VL++P H PLL K++ + KVT
Sbjct: 1 MSTFKNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFS 60
Query: 61 XXXXXXXXXX--XXXDGYDQGGSAQAES-------IEAYLEKFWQIGPRSLCELVEKMNG 111
DG +G + I+A E F + ++ E +
Sbjct: 61 RSNEFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN--- 117
Query: 112 SVVPVDCIVYDSFLPWALDVAKKFG-------LVGAAFLTQSCAVDCIYYHVNKGXXXXX 164
+ C+V D+F + D+A++ G L D I G
Sbjct: 118 ----ITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE--KTGSKEVH 171
Query: 165 XXXXXXXXXGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEE 224
G P L+ D+P V P + M+ K + + +A+ V N+F +
Sbjct: 172 DVKSIDVLPGFPELKASDLPEGVIKDIDVP-FATMLHKMGLE-LPRANAVAINSFATIHP 229
Query: 225 EVAEWLG-KLWSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKP-----DNESCIKWLNDRA 278
+ L K L +GP F++ P D C++WL+
Sbjct: 230 LIENELNSKFKLLLNVGP------------------FNLTTPQRKVSDEHGCLEWLDQHE 271
Query: 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLV 338
SVVY+SFGS E+ LA L+ F+W R + KLP+ F + T KG +
Sbjct: 272 NSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKI 331
Query: 339 VNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG 398
V W PQ+E+L H + G FLTH GWNS +E + GVPM++ P + DQ N V ++G
Sbjct: 332 VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 399 LKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDF 458
+ V + G++ +E+I + + E+G +RQ K A +AV + G+S +
Sbjct: 392 VGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTL 448
Query: 459 VANLIS 464
+ + S
Sbjct: 449 IQIVTS 454
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 165/364 (45%), Gaps = 34/364 (9%)
Query: 119 IVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHV-NKGXXXXXXXXXXXXXXGMPP 177
+V D F +DV +FG+ FLT + + + N+ P
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 178 LEPQDMPSFVYDLGSYPAVSDMVVKYQF-DNIDKADWVLCNTFYELEEEVAEWL----GK 232
+PS V + + Y+ + ++ NTF +LE+ + L K
Sbjct: 178 GISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237
Query: 233 LWSLKTIGPTV-----PSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSF 287
+ + +GP + P+ LD+ D +KWL+++ SVV++ F
Sbjct: 238 IPPIYAVGPLLDLKGQPNPKLDQAQHD--------------LILKWLDEQPDKSVVFLCF 283
Query: 288 GSYA-PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQ 344
GS ++ E+A GLK + FLW +E+ PE F + E KG++ W PQ
Sbjct: 284 GSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 345 LEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPAD 404
+EVLAH+A G F++HCGWNS +E++ GVP++ P +++Q N ++ W +GL + D
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 405 -EKG--IVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVAN 461
KG +V E I + +++ ++ + + + ++ AV GGSS ++ + +
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
Query: 462 LISS 465
+ S
Sbjct: 461 ITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 163/363 (44%), Gaps = 38/363 (10%)
Query: 119 IVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHV-NKGXXXXXXXXXXXXXXGMPP 177
+V D F +DV +FG+ FLT + + + N+ P
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 178 LEPQDMPSFVYDLGSYPAVSDMVVKYQF-DNIDKADWVLCNTFYELEEEVAEWL----GK 232
+PS V + + Y+ + ++ NTF +LE+ + L K
Sbjct: 178 GISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237
Query: 233 LWSLKTIGPTV-----PSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSF 287
+ + +GP + P+ LD+ D +KWL+++ SVV++ F
Sbjct: 238 IPPIYAVGPLLDLKGQPNPKLDQAQHD--------------LILKWLDEQPDKSVVFLCF 283
Query: 288 GSYA-PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQ 344
GS ++ E+A GLK + FLW +E+ PE F + E KG++ W PQ
Sbjct: 284 GSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 345 LEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPAD 404
+EVLAH+A G F++HCGWNS +E++ GVP++ P +++Q N ++ W +GL + D
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 405 -EKG--IVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSS----DKNIDD 457
KG +V E I + +++ ++ + + + ++ AV GGSS K IDD
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
Query: 458 FVA 460
Sbjct: 461 ITG 463
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 338 VVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKM 397
V W PQL++L A F+TH G STMEALS VPMVA+PQ ++Q+ N + I+++ +
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GL 365
Query: 398 GLKVPADEKGIVR-REAIAHCISEILEGERGKEIRQ 432
G +P D+ + REA+ S+ ER +RQ
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 5 EKKAASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTT 49
E ++AS H + P GH+NP L + L +G +V+ T
Sbjct: 4 EHRSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAIT 48
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 264 KPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEE-LAWGLKATNQYFLWVVRESEQA 322
KP + ++ + VV S GS EE +A L Q LW
Sbjct: 5 KPLPKEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW-------- 56
Query: 323 KLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWS 382
+ N D + W PQ ++L H F+TH G N EA+ G+P V +P ++
Sbjct: 57 RFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFA 116
Query: 383 DQSTN 387
DQ N
Sbjct: 117 DQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 316 VRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPM 375
V +E +LP+N V +W PQL +L A F+TH G + E L+ PM
Sbjct: 273 VTPAELGELPDNVE--------VHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPM 322
Query: 376 VAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423
+A+PQ DQ N + + G+ R+ A +++L
Sbjct: 323 IAVPQAVDQFGNADMLQGL------------GVARKLATEEATADLLR 358
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVT 45
H + S A GH+NP L+ + L +G +VT
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVT 39
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 340 NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQST 386
W P VLAH A C LTH + +EA + GVP+V +P ++ ++
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAA 331
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 340 NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGL 399
W P ++VL E A +TH G + EAL G P+V +PQ D + + D +G
Sbjct: 303 RWVPHVKVL--EQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 400 KVPADE 405
+P ++
Sbjct: 360 VLPGEK 365
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 340 NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGL 399
W P ++VL E A +TH G + EAL G P+V +PQ D + + D +G
Sbjct: 303 RWVPHVKVL--EQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGA 359
Query: 400 KVPADE 405
+P ++
Sbjct: 360 VLPGEK 365
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 273 WLNDRAKG-SVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWV----VRESEQAKLPEN 327
WL+ R +VY++ G+ + VE + GL + L + S ++P N
Sbjct: 234 WLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPAN 293
Query: 328 FSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQS 385
E+ W PQ +L H + H G +T+ AL GVP ++ P W+ S
Sbjct: 294 VRLES--------WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 338 VVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 338 VVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 114
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 293 LKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDET-SQKGLV 338
L+ E + +L +KAT + F+ ++ E + LPENF D +KGLV
Sbjct: 46 LQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLV 92
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 339 VNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG 398
V W P L+V+A + H G ST+ LS GVP + +P+ S + + D
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 399 LKVPADEKGIVRREAIAHCISEI 421
+P ++ EAIA E+
Sbjct: 326 ALLPGEDST----EAIADSCQEL 344
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 261 SMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYF---LWVVR 317
S F D+ I+WLN R S +YA E+ + ++ATN + W+V+
Sbjct: 76 SHFHSDSTGGIEWLNSR--------SIPTYASELTNELLKKDGKVQATNSFSGVNYWLVK 127
Query: 318 ESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEA 368
+ P + VV W P+ ++L GCF+ G + +A
Sbjct: 128 NKIEVFYPGPGHTPDN----VVVWLPERKIL---FGGCFIKPYGLGNLGDA 171
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 261 SMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYF---LWVVR 317
S F D+ I+WLN R S +YA E+ + ++ATN + W+V+
Sbjct: 75 SHFHSDSTGGIEWLNSR--------SIPTYASELTNELLKKDGKVQATNSFSGVNYWLVK 126
Query: 318 ESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEA 368
+ P + VV W P+ ++L GCF+ G + +A
Sbjct: 127 NKIEVFYPGPGHTPDN----VVVWLPERKIL---FGGCFIKPYGLGNLGDA 170
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 261 SMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYF---LWVVR 317
S F D+ I+WLN R S +YA E+ + ++ATN + W+V+
Sbjct: 76 SHFHSDSTGGIEWLNSR--------SIPTYASELTNELLKKDGKVQATNSFSGVNYWLVK 127
Query: 318 ESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEA 368
+ P + VV W P+ ++L GCF+ G + +A
Sbjct: 128 NKIEVFYPGPGHTPDN----VVVWLPERKIL---FGGCFIKPYGLGNLGDA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,816,210
Number of Sequences: 62578
Number of extensions: 562932
Number of successful extensions: 1224
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 33
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)