Query 012194
Match_columns 468
No_of_seqs 141 out of 1553
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 00:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 100.0 2.9E-66 6.3E-71 502.6 47.5 440 13-463 5-447 (449)
2 PLN02555 limonoid glucosyltran 100.0 5.4E-66 1.2E-70 504.8 48.2 445 13-465 7-470 (480)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.2E-64 2.5E-69 493.9 46.3 429 12-464 6-450 (451)
4 PLN02210 UDP-glucosyl transfer 100.0 5.1E-64 1.1E-68 491.4 47.1 442 10-463 5-454 (456)
5 PLN02562 UDP-glycosyltransfera 100.0 6.7E-64 1.5E-68 490.2 46.5 429 12-463 5-448 (448)
6 PLN02152 indole-3-acetate beta 100.0 8.2E-64 1.8E-68 486.3 46.1 438 12-463 2-455 (455)
7 PLN02207 UDP-glycosyltransfera 100.0 1.8E-62 3.8E-67 477.8 46.2 441 11-466 1-467 (468)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.6E-62 1E-66 478.9 45.4 445 9-465 5-472 (477)
9 PLN02448 UDP-glycosyltransfera 100.0 8.5E-62 1.8E-66 479.2 46.2 436 10-465 7-458 (459)
10 PLN02992 coniferyl-alcohol glu 100.0 1.2E-61 2.6E-66 472.8 45.4 424 12-463 4-468 (481)
11 PLN02554 UDP-glycosyltransfera 100.0 1.2E-61 2.6E-66 479.7 43.6 429 13-465 2-479 (481)
12 PLN00164 glucosyltransferase; 100.0 3.4E-61 7.4E-66 474.5 46.4 434 11-465 1-474 (480)
13 PLN03015 UDP-glucosyl transfer 100.0 4.9E-61 1.1E-65 465.7 45.4 430 12-463 2-467 (470)
14 PLN02670 transferase, transfer 100.0 2.3E-61 5.1E-66 470.5 42.7 436 12-466 5-467 (472)
15 PLN02534 UDP-glycosyltransfera 100.0 7E-61 1.5E-65 469.4 44.7 443 12-467 7-489 (491)
16 PLN03004 UDP-glycosyltransfera 100.0 4.8E-61 1E-65 466.4 42.2 424 12-453 2-450 (451)
17 PLN03007 UDP-glucosyltransfera 100.0 1.5E-60 3.3E-65 472.6 44.9 440 13-464 5-480 (482)
18 PLN02167 UDP-glycosyltransfera 100.0 2.3E-60 5E-65 469.9 45.4 438 12-467 2-475 (475)
19 PLN02208 glycosyltransferase f 100.0 7E-60 1.5E-64 459.2 42.4 418 13-464 4-439 (442)
20 PLN02764 glycosyltransferase f 100.0 1.9E-59 4.1E-64 453.3 43.6 419 12-465 4-446 (453)
21 PLN00414 glycosyltransferase f 100.0 2.2E-58 4.7E-63 449.2 42.5 419 12-465 3-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 4.3E-47 9.4E-52 376.9 37.8 402 11-465 18-467 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 8.5E-49 1.8E-53 396.5 9.3 394 15-444 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-44 4.1E-49 353.5 31.1 358 19-444 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.2E-43 4.8E-48 347.6 28.1 362 14-443 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 1.6E-42 3.6E-47 335.2 21.7 386 13-464 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.2E-39 2.6E-44 329.9 18.0 395 13-443 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.8E-27 6.1E-32 226.3 28.3 321 15-436 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4E-25 8.7E-30 210.8 25.4 306 14-421 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 7.3E-24 1.6E-28 200.1 28.7 327 14-436 1-337 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 9.3E-23 2E-27 194.0 24.6 124 280-425 188-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.9E-19 4.2E-24 174.6 28.6 342 14-461 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.4E-18 2.9E-23 168.3 27.7 315 15-425 1-325 (350)
34 COG4671 Predicted glycosyl tra 99.8 1.5E-17 3.3E-22 149.4 21.9 333 11-423 7-364 (400)
35 TIGR01133 murG undecaprenyldip 99.8 2E-16 4.4E-21 152.9 27.1 310 14-425 1-322 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.3E-16 5E-21 153.4 22.7 348 14-458 6-382 (385)
37 PRK13609 diacylglycerol glucos 99.7 2.6E-15 5.5E-20 146.9 22.9 134 279-425 201-339 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 3E-15 6.6E-20 138.8 21.4 104 281-391 171-279 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 1.8E-14 4E-19 141.0 22.2 136 279-425 185-342 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.6 2.6E-17 5.7E-22 141.1 -0.6 137 282-425 1-145 (167)
41 PRK13608 diacylglycerol glucos 99.6 1.6E-13 3.4E-18 134.3 22.9 134 278-425 200-339 (391)
42 PLN02605 monogalactosyldiacylg 99.5 9.2E-12 2E-16 121.7 25.3 135 278-424 204-347 (382)
43 TIGR03492 conserved hypothetic 99.5 3.1E-11 6.8E-16 117.5 25.0 324 23-425 6-365 (396)
44 PF03033 Glyco_transf_28: Glyc 99.4 1.7E-14 3.6E-19 119.8 0.7 122 16-146 1-131 (139)
45 cd03814 GT1_like_2 This family 99.4 5.7E-10 1.2E-14 108.1 29.3 129 280-425 196-333 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 6.3E-10 1.4E-14 111.8 28.8 140 281-438 263-415 (465)
47 cd03800 GT1_Sucrose_synthase T 99.4 4.2E-09 9E-14 103.7 33.0 133 280-425 219-369 (398)
48 PRK10307 putative glycosyl tra 99.3 3.8E-09 8.2E-14 104.6 31.7 167 281-464 229-410 (412)
49 cd03794 GT1_wbuB_like This fam 99.3 1.8E-09 3.9E-14 105.4 28.7 135 279-425 218-366 (394)
50 cd04962 GT1_like_5 This family 99.3 1.4E-09 3E-14 106.1 27.5 145 280-437 196-350 (371)
51 cd03823 GT1_ExpE7_like This fa 99.3 2.7E-09 5.8E-14 103.1 29.0 133 279-425 189-330 (359)
52 cd03818 GT1_ExpC_like This fam 99.3 4.6E-09 1E-13 103.4 30.3 92 333-436 280-379 (396)
53 cd03808 GT1_cap1E_like This fa 99.3 9.1E-09 2E-13 99.1 31.7 316 15-425 1-330 (359)
54 cd03816 GT1_ALG1_like This fam 99.3 8.9E-09 1.9E-13 101.8 30.4 91 334-438 294-399 (415)
55 TIGR03449 mycothiol_MshA UDP-N 99.3 2.4E-08 5.1E-13 98.7 31.5 93 333-437 282-382 (405)
56 cd03817 GT1_UGDG_like This fam 99.2 1E-08 2.2E-13 99.5 28.4 147 280-440 201-360 (374)
57 COG3980 spsG Spore coat polysa 99.2 4E-09 8.6E-14 92.9 21.9 146 281-441 159-307 (318)
58 cd03805 GT1_ALG2_like This fam 99.2 1.8E-08 3.9E-13 99.0 27.9 145 279-436 209-377 (392)
59 cd03801 GT1_YqgM_like This fam 99.2 2.3E-08 4.9E-13 96.5 28.0 82 332-425 254-342 (374)
60 cd03795 GT1_like_4 This family 99.2 2.5E-08 5.4E-13 96.6 27.6 145 280-437 190-346 (357)
61 cd03820 GT1_amsD_like This fam 99.2 3.9E-08 8.5E-13 94.2 27.4 144 281-437 178-333 (348)
62 PRK05749 3-deoxy-D-manno-octul 99.1 1.9E-07 4E-12 92.9 29.5 81 335-425 303-389 (425)
63 cd03825 GT1_wcfI_like This fam 99.1 6.3E-07 1.4E-11 87.0 32.2 82 332-425 242-331 (365)
64 TIGR02468 sucrsPsyn_pln sucros 99.1 5.1E-07 1.1E-11 95.5 32.1 380 10-438 166-652 (1050)
65 cd03798 GT1_wlbH_like This fam 99.0 3.2E-07 6.9E-12 88.7 28.3 133 280-425 201-345 (377)
66 cd03821 GT1_Bme6_like This fam 99.0 1E-06 2.3E-11 85.3 30.8 141 280-436 202-358 (375)
67 PRK14089 ipid-A-disaccharide s 99.0 1.3E-07 2.8E-12 89.7 22.2 148 280-441 167-332 (347)
68 cd03799 GT1_amsK_like This is 99.0 2.5E-07 5.3E-12 89.5 25.0 133 280-425 178-328 (355)
69 TIGR02472 sucr_P_syn_N sucrose 99.0 3.4E-06 7.3E-11 84.2 33.5 82 332-425 315-407 (439)
70 cd03796 GT1_PIG-A_like This fa 99.0 1.2E-06 2.5E-11 86.4 29.9 131 280-425 192-334 (398)
71 cd03819 GT1_WavL_like This fam 99.0 1E-06 2.2E-11 85.3 28.8 149 279-439 183-347 (355)
72 TIGR00236 wecB UDP-N-acetylglu 99.0 6E-08 1.3E-12 94.4 19.9 135 280-434 197-341 (365)
73 PF04007 DUF354: Protein of un 99.0 8.4E-07 1.8E-11 83.5 26.1 299 14-422 1-308 (335)
74 PRK09922 UDP-D-galactose:(gluc 98.9 3E-07 6.4E-12 89.3 23.5 148 281-441 180-344 (359)
75 cd03811 GT1_WabH_like This fam 98.9 3.3E-07 7.3E-12 87.8 23.4 134 279-425 187-333 (353)
76 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 5.7E-08 1.2E-12 94.5 16.6 132 279-425 197-338 (363)
77 cd05844 GT1_like_7 Glycosyltra 98.9 2.4E-06 5.1E-11 83.2 28.0 93 332-436 243-349 (367)
78 cd03802 GT1_AviGT4_like This f 98.9 4.7E-07 1E-11 86.8 22.5 127 282-424 172-308 (335)
79 cd04951 GT1_WbdM_like This fam 98.9 1.8E-06 3.8E-11 83.7 26.5 138 280-436 187-336 (360)
80 TIGR03088 stp2 sugar transfera 98.9 3.1E-06 6.8E-11 82.6 27.8 134 279-425 192-339 (374)
81 cd03822 GT1_ecORF704_like This 98.9 8.5E-06 1.8E-10 78.9 30.7 144 280-436 184-347 (366)
82 TIGR02149 glgA_Coryne glycogen 98.8 1.4E-05 3.1E-10 78.4 30.6 142 281-436 201-365 (388)
83 cd03807 GT1_WbnK_like This fam 98.8 2E-05 4.4E-10 75.9 30.5 131 280-425 192-333 (365)
84 TIGR02470 sucr_synth sucrose s 98.8 7.1E-05 1.5E-09 77.9 34.9 91 333-435 618-725 (784)
85 cd04955 GT1_like_6 This family 98.8 1.1E-05 2.3E-10 78.3 27.9 125 283-425 195-331 (363)
86 cd03812 GT1_CapH_like This fam 98.7 6.9E-06 1.5E-10 79.5 25.5 134 279-425 190-332 (358)
87 PLN00142 sucrose synthase 98.7 8.6E-06 1.9E-10 84.6 27.0 92 333-436 641-749 (815)
88 PLN02275 transferase, transfer 98.7 1.4E-05 2.9E-10 78.0 26.5 75 334-422 286-371 (371)
89 PRK15427 colanic acid biosynth 98.7 9.5E-06 2.1E-10 79.9 24.6 142 280-436 221-384 (406)
90 cd03809 GT1_mtfB_like This fam 98.7 1.1E-05 2.4E-10 78.0 25.0 131 281-425 195-337 (365)
91 KOG3349 Predicted glycosyltran 98.7 1.7E-07 3.7E-12 74.4 9.2 113 281-397 4-128 (170)
92 PLN02949 transferase, transfer 98.6 6.1E-05 1.3E-09 75.1 28.4 116 332-465 333-460 (463)
93 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 3E-06 6.5E-11 82.0 18.1 128 280-423 201-338 (365)
94 PRK00654 glgA glycogen synthas 98.6 2.8E-05 6.2E-10 78.1 24.9 136 280-423 281-427 (466)
95 cd03792 GT1_Trehalose_phosphor 98.6 5.3E-05 1.1E-09 74.0 26.2 143 280-436 189-350 (372)
96 TIGR03087 stp1 sugar transfera 98.6 5E-06 1.1E-10 81.9 19.1 90 333-436 279-375 (397)
97 PRK01021 lpxB lipid-A-disaccha 98.5 0.00014 3E-09 72.9 27.3 337 13-441 226-589 (608)
98 PRK15179 Vi polysaccharide bio 98.5 0.00055 1.2E-08 71.2 31.0 97 332-438 572-674 (694)
99 PF02684 LpxB: Lipid-A-disacch 98.5 9.1E-05 2E-09 70.9 23.4 166 278-451 182-364 (373)
100 cd03804 GT1_wbaZ_like This fam 98.5 6.4E-06 1.4E-10 79.7 16.1 125 283-425 197-327 (351)
101 PRK10017 colanic acid biosynth 98.4 0.0006 1.3E-08 66.9 28.0 177 271-465 225-425 (426)
102 TIGR02095 glgA glycogen/starch 98.3 0.00062 1.4E-08 68.7 27.4 136 280-423 290-436 (473)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.00091 2E-08 63.6 25.7 320 16-440 51-403 (419)
104 cd03806 GT1_ALG11_like This fa 98.3 0.00067 1.5E-08 67.2 26.2 81 332-425 303-393 (419)
105 PF02350 Epimerase_2: UDP-N-ac 98.3 4.8E-06 1.1E-10 79.7 10.6 131 278-425 178-319 (346)
106 cd04949 GT1_gtfA_like This fam 98.3 7.4E-05 1.6E-09 72.9 19.3 150 282-442 205-364 (372)
107 PLN02846 digalactosyldiacylgly 98.3 0.00061 1.3E-08 67.3 24.8 73 338-425 288-364 (462)
108 cd03791 GT1_Glycogen_synthase_ 98.2 0.00042 9.1E-09 70.1 23.7 135 280-424 295-442 (476)
109 PF00534 Glycos_transf_1: Glyc 98.2 2E-05 4.3E-10 67.7 12.0 134 278-425 12-159 (172)
110 PLN02316 synthase/transferase 98.2 0.0058 1.3E-07 65.8 32.3 132 282-424 841-998 (1036)
111 cd04950 GT1_like_1 Glycosyltra 98.2 0.0027 5.8E-08 62.0 28.0 125 282-425 206-341 (373)
112 TIGR02918 accessory Sec system 98.2 0.00053 1.1E-08 69.1 22.5 151 281-442 319-485 (500)
113 COG0381 WecB UDP-N-acetylgluco 98.2 0.00041 8.9E-09 65.3 19.9 142 279-441 203-355 (383)
114 PRK15484 lipopolysaccharide 1, 98.1 0.00011 2.4E-09 71.9 16.6 84 331-425 254-345 (380)
115 COG0763 LpxB Lipid A disacchar 98.1 0.0018 3.8E-08 61.0 23.2 352 14-461 2-378 (381)
116 PRK10125 putative glycosyl tra 98.1 0.007 1.5E-07 59.6 28.7 116 282-419 242-366 (405)
117 PF13844 Glyco_transf_41: Glyc 98.1 8.8E-05 1.9E-09 72.5 14.2 137 278-425 282-431 (468)
118 COG5017 Uncharacterized conser 98.0 0.00012 2.5E-09 57.4 11.2 127 283-422 2-140 (161)
119 cd03813 GT1_like_3 This family 98.0 0.002 4.2E-08 65.1 22.3 83 332-425 352-443 (475)
120 cd04946 GT1_AmsK_like This fam 97.8 0.0011 2.4E-08 65.5 16.6 146 280-436 229-390 (407)
121 PF13692 Glyco_trans_1_4: Glyc 97.8 0.00014 3.1E-09 59.5 8.3 125 282-424 3-135 (135)
122 PLN02939 transferase, transfer 97.6 0.061 1.3E-06 57.3 26.4 133 282-423 780-930 (977)
123 TIGR02193 heptsyl_trn_I lipopo 97.5 0.016 3.4E-07 55.3 18.9 135 279-422 178-319 (319)
124 PRK09814 beta-1,6-galactofuran 97.4 0.001 2.3E-08 63.7 10.6 110 332-460 205-331 (333)
125 cd01635 Glycosyltransferase_GT 97.4 0.0096 2.1E-07 53.0 16.3 49 332-382 159-215 (229)
126 PLN02501 digalactosyldiacylgly 97.3 0.12 2.6E-06 53.2 23.9 76 335-425 602-682 (794)
127 PRK10916 ADP-heptose:LPS hepto 97.2 0.069 1.5E-06 51.5 20.8 103 14-141 1-106 (348)
128 COG0859 RfaF ADP-heptose:LPS h 97.0 0.16 3.5E-06 48.6 20.3 266 13-378 1-276 (334)
129 TIGR02195 heptsyl_trn_II lipop 97.0 0.11 2.3E-06 49.8 19.0 96 279-378 173-276 (334)
130 PRK10422 lipopolysaccharide co 96.9 0.22 4.7E-06 48.1 21.0 96 280-378 183-287 (352)
131 PF06722 DUF1205: Protein of u 96.9 0.0012 2.6E-08 50.0 3.7 66 267-337 27-97 (97)
132 PRK14098 glycogen synthase; Pr 96.9 0.019 4.2E-07 58.0 13.6 132 280-422 306-449 (489)
133 PHA01633 putative glycosyl tra 96.9 0.04 8.7E-07 52.3 14.6 102 332-441 199-324 (335)
134 PRK15490 Vi polysaccharide bio 96.8 0.027 5.8E-07 56.6 13.8 124 282-418 399-532 (578)
135 COG3914 Spy Predicted O-linked 96.8 0.012 2.6E-07 58.0 10.8 132 278-419 427-573 (620)
136 TIGR02201 heptsyl_trn_III lipo 96.7 0.057 1.2E-06 52.0 15.2 97 279-378 180-285 (344)
137 PRK10964 ADP-heptose:LPS hepto 96.7 0.13 2.9E-06 48.9 17.6 134 281-423 179-321 (322)
138 COG1817 Uncharacterized protei 96.7 0.47 1E-05 43.6 22.5 111 14-146 1-114 (346)
139 KOG4626 O-linked N-acetylgluco 96.6 0.018 3.9E-07 57.1 10.3 137 278-424 756-904 (966)
140 PF13477 Glyco_trans_4_2: Glyc 96.0 0.092 2E-06 42.9 10.4 101 15-142 1-105 (139)
141 PF13524 Glyco_trans_1_2: Glyc 95.9 0.098 2.1E-06 39.3 9.3 82 359-459 9-91 (92)
142 cd03789 GT1_LPS_heptosyltransf 95.9 0.63 1.4E-05 43.2 16.7 102 15-141 1-105 (279)
143 PHA01630 putative group 1 glyc 95.8 0.53 1.1E-05 45.0 16.0 88 340-436 196-306 (331)
144 TIGR03713 acc_sec_asp1 accesso 95.2 0.19 4.1E-06 51.0 11.0 93 334-443 409-508 (519)
145 PF13579 Glyco_trans_4_4: Glyc 95.1 0.046 9.9E-07 45.5 5.6 96 29-143 6-103 (160)
146 TIGR02400 trehalose_OtsA alpha 94.9 0.36 7.8E-06 48.3 11.9 103 340-463 342-455 (456)
147 TIGR02919 accessory Sec system 94.1 1.6 3.4E-05 43.4 14.2 135 279-439 282-424 (438)
148 PF01975 SurE: Survival protei 94.0 0.26 5.6E-06 42.9 7.6 119 14-146 1-135 (196)
149 PF12000 Glyco_trans_4_3: Gkyc 93.9 0.68 1.5E-05 39.2 9.7 93 39-144 1-96 (171)
150 PLN03063 alpha,alpha-trehalose 93.6 0.97 2.1E-05 48.6 12.7 99 346-465 371-478 (797)
151 cd03788 GT1_TPS Trehalose-6-Ph 93.5 0.43 9.2E-06 48.0 9.3 103 339-462 346-459 (460)
152 PRK14099 glycogen synthase; Pr 93.4 0.84 1.8E-05 46.2 11.2 136 282-425 296-448 (485)
153 COG4370 Uncharacterized protei 92.8 0.43 9.4E-06 43.5 7.1 91 334-435 294-387 (412)
154 PF05159 Capsule_synth: Capsul 91.6 1.3 2.9E-05 40.8 9.3 82 296-380 140-226 (269)
155 COG0438 RfaG Glycosyltransfera 90.9 8.9 0.00019 35.8 14.8 131 282-425 200-343 (381)
156 PF01075 Glyco_transf_9: Glyco 90.3 0.45 9.8E-06 43.2 4.9 98 278-378 103-208 (247)
157 PRK14501 putative bifunctional 89.9 4.7 0.0001 43.2 12.7 112 337-465 345-463 (726)
158 PF02951 GSH-S_N: Prokaryotic 89.8 0.6 1.3E-05 36.9 4.5 40 14-53 1-43 (119)
159 PF08660 Alg14: Oligosaccharid 89.7 1.9 4.2E-05 36.6 7.8 116 19-145 3-130 (170)
160 PRK02261 methylaspartate mutas 89.7 0.66 1.4E-05 37.8 4.8 47 11-57 1-47 (137)
161 cd02067 B12-binding B12 bindin 89.5 2.4 5.2E-05 33.5 7.9 39 15-53 1-39 (119)
162 PF04464 Glyphos_transf: CDP-G 89.3 0.9 1.9E-05 44.2 6.4 144 299-457 220-366 (369)
163 PRK13932 stationary phase surv 88.4 14 0.00031 33.6 12.7 116 12-144 4-133 (257)
164 PRK02797 4-alpha-L-fucosyltran 88.3 13 0.00028 34.7 12.4 80 334-421 206-291 (322)
165 PF13439 Glyco_transf_4: Glyco 88.3 5.6 0.00012 33.2 10.0 35 23-57 11-45 (177)
166 COG1618 Predicted nucleotide k 88.1 0.89 1.9E-05 37.7 4.4 56 12-73 4-59 (179)
167 cd03793 GT1_Glycogen_synthase_ 87.3 2.4 5.2E-05 43.1 7.8 79 343-425 467-553 (590)
168 TIGR00087 surE 5'/3'-nucleotid 86.8 14 0.00029 33.5 11.7 113 14-144 1-128 (244)
169 PF02441 Flavoprotein: Flavopr 86.2 0.82 1.8E-05 36.8 3.3 44 14-58 1-44 (129)
170 PF07429 Glyco_transf_56: 4-al 86.0 21 0.00045 33.9 12.6 82 334-423 245-332 (360)
171 KOG2941 Beta-1,4-mannosyltrans 85.5 33 0.00072 32.4 27.4 127 11-148 10-141 (444)
172 TIGR02398 gluc_glyc_Psyn gluco 85.4 44 0.00095 33.8 16.8 110 336-466 364-484 (487)
173 TIGR00715 precor6x_red precorr 85.2 5.1 0.00011 36.6 8.3 35 14-53 1-35 (256)
174 PF02374 ArsA_ATPase: Anion-tr 85.0 1.6 3.5E-05 41.1 5.1 41 14-54 1-42 (305)
175 PRK13933 stationary phase surv 83.7 24 0.00051 32.1 11.7 115 14-144 1-129 (253)
176 PF06258 Mito_fiss_Elm1: Mitoc 83.1 14 0.00031 34.8 10.5 39 343-382 221-259 (311)
177 PRK13935 stationary phase surv 82.6 28 0.0006 31.7 11.7 113 14-144 1-128 (253)
178 COG2910 Putative NADH-flavin r 82.3 1.7 3.6E-05 36.9 3.5 34 14-52 1-35 (211)
179 PF04127 DFP: DNA / pantothena 82.1 1.2 2.6E-05 38.4 2.7 39 13-51 3-53 (185)
180 PRK13934 stationary phase surv 82.0 31 0.00068 31.5 11.8 112 14-144 1-127 (266)
181 PF12146 Hydrolase_4: Putative 80.1 3.5 7.6E-05 29.9 4.2 35 13-47 15-49 (79)
182 COG0496 SurE Predicted acid ph 79.8 9.4 0.0002 34.5 7.6 114 14-146 1-127 (252)
183 PRK00346 surE 5'(3')-nucleotid 79.2 40 0.00087 30.6 11.6 111 14-144 1-124 (250)
184 PRK02155 ppnK NAD(+)/NADH kina 79.2 10 0.00022 35.4 8.1 95 296-424 21-119 (291)
185 cd02070 corrinoid_protein_B12- 79.0 13 0.00028 32.5 8.4 42 13-54 82-123 (201)
186 cd01425 RPS2 Ribosomal protein 78.8 9.8 0.00021 33.1 7.4 116 27-146 42-160 (193)
187 COG0003 ArsA Predicted ATPase 78.7 16 0.00035 34.6 9.2 41 14-54 2-43 (322)
188 PRK14077 pnk inorganic polypho 78.6 10 0.00022 35.3 7.8 58 345-424 59-120 (287)
189 COG1797 CobB Cobyrinic acid a, 78.6 2.3 5.1E-05 41.2 3.6 108 15-148 2-123 (451)
190 PLN03064 alpha,alpha-trehalose 78.0 51 0.0011 36.2 13.8 105 340-465 446-562 (934)
191 PRK08506 replicative DNA helic 76.9 6.5 0.00014 39.6 6.5 128 15-144 194-350 (472)
192 TIGR02370 pyl_corrinoid methyl 76.7 11 0.00025 32.8 7.2 46 12-57 83-128 (197)
193 PRK08305 spoVFB dipicolinate s 76.2 3.7 8E-05 35.6 3.9 46 12-57 4-49 (196)
194 PRK14099 glycogen synthase; Pr 76.2 4.6 9.9E-05 40.9 5.2 41 11-51 1-47 (485)
195 TIGR01007 eps_fam capsular exo 76.1 39 0.00084 29.5 10.6 39 12-50 15-55 (204)
196 cd07039 TPP_PYR_POX Pyrimidine 75.2 29 0.00063 29.2 9.1 28 350-379 63-96 (164)
197 PF00731 AIRC: AIR carboxylase 75.2 12 0.00027 30.8 6.5 138 282-443 2-148 (150)
198 COG4394 Uncharacterized protei 74.9 70 0.0015 29.5 11.6 43 335-380 239-286 (370)
199 PRK13982 bifunctional SbtC-lik 74.3 5.4 0.00012 39.8 5.0 42 11-52 254-307 (475)
200 cd07038 TPP_PYR_PDC_IPDC_like 73.9 17 0.00036 30.6 7.4 26 355-380 62-93 (162)
201 PRK06732 phosphopantothenate-- 73.5 3.6 7.8E-05 36.9 3.4 37 14-50 1-49 (229)
202 TIGR03600 phage_DnaB phage rep 73.2 11 0.00024 37.4 7.0 42 15-56 196-238 (421)
203 COG2185 Sbm Methylmalonyl-CoA 72.4 5.9 0.00013 32.2 3.9 45 11-55 10-54 (143)
204 PF02571 CbiJ: Precorrin-6x re 72.2 13 0.00029 33.7 6.7 29 14-48 1-29 (249)
205 COG1484 DnaC DNA replication p 72.1 4.4 9.5E-05 37.0 3.6 46 12-57 104-149 (254)
206 COG1663 LpxK Tetraacyldisaccha 72.1 11 0.00024 35.5 6.1 35 19-53 55-89 (336)
207 PRK04885 ppnK inorganic polyph 71.6 7.9 0.00017 35.5 5.1 53 350-424 35-93 (265)
208 PRK04539 ppnK inorganic polyph 71.1 28 0.00061 32.6 8.7 58 345-424 63-124 (296)
209 PF02310 B12-binding: B12 bind 70.6 8.8 0.00019 30.2 4.7 37 15-51 2-38 (121)
210 PRK05986 cob(I)alamin adenolsy 70.4 54 0.0012 28.4 9.6 104 11-126 20-126 (191)
211 cd00561 CobA_CobO_BtuR ATP:cor 70.3 64 0.0014 27.0 9.8 100 15-126 4-106 (159)
212 PRK05973 replicative DNA helic 70.3 12 0.00027 33.6 6.0 43 15-57 66-108 (237)
213 cd00984 DnaB_C DnaB helicase C 70.1 14 0.00029 33.4 6.4 43 15-57 15-58 (242)
214 PRK00090 bioD dithiobiotin syn 69.5 33 0.00072 30.4 8.7 33 16-48 2-35 (222)
215 PRK14098 glycogen synthase; Pr 69.2 7.8 0.00017 39.3 5.0 41 11-51 3-49 (489)
216 PF09314 DUF1972: Domain of un 69.0 75 0.0016 27.4 11.1 55 15-73 3-62 (185)
217 PRK09620 hypothetical protein; 68.8 6.1 0.00013 35.4 3.7 39 13-51 3-53 (229)
218 COG4088 Predicted nucleotide k 68.7 48 0.001 29.1 8.7 102 15-146 3-110 (261)
219 TIGR03029 EpsG chain length de 68.6 91 0.002 28.6 11.8 38 13-50 102-141 (274)
220 PRK05595 replicative DNA helic 68.3 10 0.00023 37.9 5.6 41 16-56 204-245 (444)
221 PRK08006 replicative DNA helic 68.1 17 0.00036 36.7 7.0 127 16-144 227-384 (471)
222 PRK01911 ppnK inorganic polyph 67.6 7.9 0.00017 36.1 4.3 58 345-424 59-120 (292)
223 PF07015 VirC1: VirC1 protein; 67.4 10 0.00022 33.8 4.7 41 17-57 5-46 (231)
224 PRK01231 ppnK inorganic polyph 67.2 27 0.00058 32.7 7.7 96 295-424 19-118 (295)
225 PRK06321 replicative DNA helic 67.1 19 0.00042 36.2 7.2 41 16-56 229-270 (472)
226 COG3660 Predicted nucleoside-d 67.0 55 0.0012 29.8 9.0 75 301-377 189-270 (329)
227 KOG1111 N-acetylglucosaminyltr 66.5 39 0.00085 32.2 8.4 82 294-378 209-301 (426)
228 TIGR00708 cobA cob(I)alamin ad 66.5 76 0.0016 27.0 9.6 95 15-125 7-107 (173)
229 PRK06904 replicative DNA helic 66.3 17 0.00037 36.6 6.7 41 16-56 224-265 (472)
230 PF01210 NAD_Gly3P_dh_N: NAD-d 66.2 4.4 9.5E-05 33.9 2.2 32 15-51 1-32 (157)
231 PRK08057 cobalt-precorrin-6x r 66.1 33 0.00071 31.2 7.9 36 14-54 3-38 (248)
232 TIGR00347 bioD dethiobiotin sy 65.9 35 0.00076 28.5 7.7 28 20-47 5-32 (166)
233 PRK13931 stationary phase surv 65.7 1.1E+02 0.0024 28.0 12.1 113 14-144 1-129 (261)
234 PF10649 DUF2478: Protein of u 65.5 76 0.0016 26.6 9.2 114 17-146 2-133 (159)
235 KOG0853 Glycosyltransferase [C 65.3 4.9 0.00011 40.0 2.6 61 363-434 380-440 (495)
236 TIGR00640 acid_CoA_mut_C methy 65.3 21 0.00046 28.8 5.9 41 12-52 1-41 (132)
237 PRK11519 tyrosine kinase; Prov 65.3 1.3E+02 0.0029 32.2 13.5 113 13-142 525-666 (719)
238 cd07035 TPP_PYR_POX_like Pyrim 65.3 56 0.0012 26.9 8.8 29 350-380 59-93 (155)
239 PRK08760 replicative DNA helic 65.2 15 0.00032 37.0 6.1 40 16-55 232-272 (476)
240 PF02844 GARS_N: Phosphoribosy 65.0 26 0.00057 26.7 5.9 27 115-141 62-91 (100)
241 PRK07313 phosphopantothenoylcy 64.2 8.5 0.00018 33.1 3.6 43 14-57 2-44 (182)
242 PRK02649 ppnK inorganic polyph 64.1 9 0.00019 36.0 4.0 57 346-424 64-124 (305)
243 smart00851 MGS MGS-like domain 63.6 57 0.0012 24.1 7.6 79 30-140 2-89 (90)
244 COG0052 RpsB Ribosomal protein 63.4 35 0.00076 30.6 7.2 31 116-146 157-189 (252)
245 PLN02470 acetolactate synthase 63.3 35 0.00075 35.6 8.6 90 286-379 2-109 (585)
246 PRK06249 2-dehydropantoate 2-r 63.2 9.8 0.00021 36.0 4.2 36 11-51 3-38 (313)
247 PRK12311 rpsB 30S ribosomal pr 62.9 26 0.00057 33.1 6.8 32 115-146 152-185 (326)
248 PRK12342 hypothetical protein; 62.8 6.2 0.00013 35.9 2.6 29 116-144 110-144 (254)
249 PRK01077 cobyrinic acid a,c-di 62.1 42 0.00091 33.7 8.6 106 15-146 5-124 (451)
250 cd02071 MM_CoA_mut_B12_BD meth 61.7 13 0.00028 29.5 4.0 40 15-54 1-40 (122)
251 cd00550 ArsA_ATPase Oxyanion-t 61.7 41 0.00088 30.7 7.8 38 15-52 1-39 (254)
252 PRK08840 replicative DNA helic 61.5 24 0.00052 35.4 6.7 127 16-144 220-377 (464)
253 PRK05920 aromatic acid decarbo 61.0 11 0.00023 33.1 3.6 44 13-57 3-46 (204)
254 TIGR02852 spore_dpaB dipicolin 60.5 12 0.00027 32.2 3.9 40 15-54 2-41 (187)
255 PRK03378 ppnK inorganic polyph 60.1 16 0.00035 34.1 4.9 58 345-424 58-119 (292)
256 cd01452 VWA_26S_proteasome_sub 58.3 47 0.001 28.7 7.1 63 13-75 107-175 (187)
257 cd01421 IMPCH Inosine monophos 58.1 22 0.00047 30.5 4.9 38 28-73 11-48 (187)
258 PHA02542 41 41 helicase; Provi 58.1 16 0.00035 36.7 4.8 41 16-56 193-233 (473)
259 cd01974 Nitrogenase_MoFe_beta 58.1 82 0.0018 31.4 9.9 35 12-51 302-336 (435)
260 PRK03372 ppnK inorganic polyph 57.9 14 0.0003 34.7 4.1 57 346-424 68-128 (306)
261 COG2861 Uncharacterized protei 57.7 1.4E+02 0.0031 26.7 9.9 40 98-141 136-178 (250)
262 PRK02231 ppnK inorganic polyph 57.6 16 0.00034 33.7 4.3 59 343-423 35-97 (272)
263 PRK04946 hypothetical protein; 57.5 3.6 7.9E-05 35.1 0.1 57 297-365 111-168 (181)
264 PRK08155 acetolactate synthase 57.1 61 0.0013 33.6 9.1 80 296-379 14-109 (564)
265 PRK07773 replicative DNA helic 56.7 27 0.00059 38.4 6.6 126 16-146 220-377 (886)
266 cd01423 MGS_CPS_I_III Methylgl 56.3 72 0.0016 24.8 7.4 94 18-141 4-106 (116)
267 PRK13789 phosphoribosylamine-- 56.3 45 0.00097 33.2 7.6 37 12-53 3-39 (426)
268 PRK03708 ppnK inorganic polyph 56.0 16 0.00036 33.7 4.2 53 350-424 57-112 (277)
269 TIGR00665 DnaB replicative DNA 56.0 30 0.00065 34.5 6.4 42 15-56 197-239 (434)
270 PF06564 YhjQ: YhjQ protein; 55.7 1.4E+02 0.0031 27.0 9.9 36 15-50 3-39 (243)
271 TIGR01470 cysG_Nterm siroheme 55.4 1.2E+02 0.0027 26.5 9.4 149 279-444 9-165 (205)
272 TIGR00725 conserved hypothetic 54.7 88 0.0019 26.2 8.0 99 268-380 21-123 (159)
273 PRK05636 replicative DNA helic 54.7 27 0.00059 35.5 5.8 40 16-55 268-308 (505)
274 PRK09165 replicative DNA helic 54.6 41 0.00088 34.2 7.1 41 16-56 220-275 (497)
275 PRK12475 thiamine/molybdopteri 54.5 39 0.00085 32.3 6.6 34 11-49 22-56 (338)
276 PRK06029 3-octaprenyl-4-hydrox 54.4 15 0.00033 31.6 3.5 43 14-57 2-45 (185)
277 TIGR01501 MthylAspMutase methy 54.3 24 0.00051 28.6 4.3 43 14-56 2-44 (134)
278 CHL00072 chlL photochlorophyll 54.0 23 0.0005 33.1 4.9 38 14-51 1-38 (290)
279 PF09001 DUF1890: Domain of un 53.9 10 0.00022 30.4 2.1 34 25-58 11-44 (139)
280 COG2874 FlaH Predicted ATPases 53.9 11 0.00024 33.0 2.5 43 16-58 31-74 (235)
281 PRK05748 replicative DNA helic 53.8 41 0.00089 33.7 7.0 42 15-56 205-247 (448)
282 PRK07004 replicative DNA helic 53.5 36 0.00078 34.2 6.4 41 16-56 216-257 (460)
283 PRK03501 ppnK inorganic polyph 53.1 26 0.00057 32.1 5.0 54 350-424 39-97 (264)
284 TIGR00421 ubiX_pad polyprenyl 53.0 13 0.00029 31.9 2.9 42 15-57 1-42 (181)
285 TIGR00355 purH phosphoribosyla 53.0 25 0.00054 35.2 5.0 38 28-73 11-48 (511)
286 PRK00881 purH bifunctional pho 52.9 34 0.00073 34.5 5.9 39 27-73 14-52 (513)
287 PRK12921 2-dehydropantoate 2-r 52.7 19 0.0004 33.8 4.1 39 14-57 1-39 (305)
288 PRK01185 ppnK inorganic polyph 52.6 27 0.00058 32.2 4.9 53 350-424 52-105 (271)
289 PRK05632 phosphate acetyltrans 52.6 1.9E+02 0.0041 30.9 11.9 35 15-49 4-39 (684)
290 PF01695 IstB_IS21: IstB-like 52.1 16 0.00034 31.3 3.2 46 12-57 46-91 (178)
291 PF04413 Glycos_transf_N: 3-De 52.0 25 0.00054 30.4 4.4 98 16-143 23-125 (186)
292 PLN02935 Bifunctional NADH kin 52.0 25 0.00055 35.2 4.9 56 347-424 259-318 (508)
293 PRK00784 cobyric acid synthase 51.8 68 0.0015 32.5 8.2 34 16-49 5-39 (488)
294 TIGR02113 coaC_strep phosphopa 51.6 18 0.00039 30.9 3.4 42 15-57 2-43 (177)
295 PRK06522 2-dehydropantoate 2-r 51.5 18 0.00039 33.9 3.8 31 14-49 1-31 (304)
296 COG0801 FolK 7,8-dihydro-6-hyd 50.7 35 0.00076 28.5 4.8 35 282-316 3-37 (160)
297 PRK14075 pnk inorganic polypho 50.7 30 0.00066 31.6 5.0 53 350-424 41-94 (256)
298 COG0859 RfaF ADP-heptose:LPS h 50.1 83 0.0018 30.0 8.2 101 13-146 175-280 (334)
299 PLN02929 NADH kinase 49.9 26 0.00055 32.8 4.4 66 349-424 63-137 (301)
300 PRK10416 signal recognition pa 49.8 1.4E+02 0.003 28.4 9.4 41 13-53 114-154 (318)
301 cd02037 MRP-like MRP (Multiple 49.7 78 0.0017 26.5 7.2 32 20-51 7-38 (169)
302 TIGR00959 ffh signal recogniti 49.6 1E+02 0.0022 30.7 8.7 42 14-55 100-142 (428)
303 PF01012 ETF: Electron transfe 49.5 39 0.00084 28.3 5.2 109 15-143 1-121 (164)
304 KOG1250 Threonine/serine dehyd 49.5 2.6E+02 0.0056 27.3 12.7 62 356-425 248-317 (457)
305 PRK06849 hypothetical protein; 49.2 34 0.00073 33.5 5.4 36 12-51 3-38 (389)
306 PRK06718 precorrin-2 dehydroge 49.1 1E+02 0.0022 26.9 7.9 146 279-444 10-165 (202)
307 PRK06749 replicative DNA helic 48.2 46 0.00099 33.1 6.2 41 16-56 189-229 (428)
308 PTZ00318 NADH dehydrogenase-li 48.0 19 0.00041 35.7 3.5 44 4-52 1-44 (424)
309 PRK14619 NAD(P)H-dependent gly 47.9 25 0.00054 33.1 4.2 34 12-50 3-36 (308)
310 TIGR00379 cobB cobyrinic acid 47.4 85 0.0018 31.5 8.0 106 16-146 2-120 (449)
311 PRK00207 sulfur transfer compl 47.3 46 0.001 26.7 5.0 44 14-57 1-48 (128)
312 cd02032 Bchl_like This family 47.1 31 0.00068 31.6 4.6 37 14-50 1-37 (267)
313 TIGR01281 DPOR_bchL light-inde 47.1 32 0.00069 31.6 4.7 35 14-48 1-35 (268)
314 cd02069 methionine_synthase_B1 47.0 33 0.00072 30.3 4.5 45 12-56 87-131 (213)
315 PTZ00345 glycerol-3-phosphate 46.9 1E+02 0.0022 29.8 8.2 36 11-51 9-51 (365)
316 COG1691 NCAIR mutase (PurE)-re 46.9 66 0.0014 28.5 6.0 116 282-421 119-249 (254)
317 COG0143 MetG Methionyl-tRNA sy 46.6 35 0.00076 35.0 5.1 40 14-53 5-54 (558)
318 PF02702 KdpD: Osmosensitive K 46.3 34 0.00074 29.8 4.2 41 11-51 3-43 (211)
319 PRK13234 nifH nitrogenase redu 46.1 38 0.00081 31.7 5.0 40 12-51 2-42 (295)
320 PF00289 CPSase_L_chain: Carba 45.9 48 0.001 25.8 4.8 69 295-369 11-89 (110)
321 TIGR03609 S_layer_CsaB polysac 45.9 1.7E+02 0.0038 27.2 9.6 111 280-397 172-290 (298)
322 PF10083 DUF2321: Uncharacteri 45.9 51 0.0011 27.1 4.9 73 378-463 78-150 (158)
323 TIGR01285 nifN nitrogenase mol 45.8 1.6E+02 0.0034 29.4 9.6 89 12-143 310-398 (432)
324 PF05693 Glycogen_syn: Glycoge 45.0 29 0.00063 35.6 4.2 93 342-441 461-566 (633)
325 PRK02645 ppnK inorganic polyph 43.9 64 0.0014 30.4 6.2 67 296-380 19-89 (305)
326 TIGR02700 flavo_MJ0208 archaeo 43.6 30 0.00065 31.1 3.8 42 16-57 2-45 (234)
327 COG1066 Sms Predicted ATP-depe 43.5 21 0.00046 34.6 2.9 46 11-57 91-136 (456)
328 COG1703 ArgK Putative periplas 43.0 60 0.0013 30.2 5.5 42 12-53 50-91 (323)
329 PF02826 2-Hacid_dh_C: D-isome 43.0 38 0.00083 28.9 4.2 106 279-419 36-142 (178)
330 cd01980 Chlide_reductase_Y Chl 42.8 84 0.0018 31.1 7.1 32 15-51 282-313 (416)
331 TIGR00173 menD 2-succinyl-5-en 42.5 98 0.0021 30.8 7.6 27 350-378 63-95 (432)
332 PF08323 Glyco_transf_5: Starc 42.3 22 0.00047 32.3 2.7 24 28-51 20-43 (245)
333 PRK14076 pnk inorganic polypho 42.2 40 0.00086 35.0 4.9 53 350-424 348-404 (569)
334 TIGR02699 archaeo_AfpA archaeo 42.1 29 0.00063 29.5 3.2 34 24-57 9-44 (174)
335 PF01075 Glyco_transf_9: Glyco 41.9 55 0.0012 29.4 5.4 101 12-146 104-212 (247)
336 PRK05579 bifunctional phosphop 41.7 32 0.0007 33.7 4.0 46 11-57 4-49 (399)
337 PF00862 Sucrose_synth: Sucros 41.6 38 0.00083 33.9 4.3 113 25-145 297-433 (550)
338 COG0205 PfkA 6-phosphofructoki 41.4 1.5E+02 0.0033 28.4 8.1 48 269-319 57-104 (347)
339 COG3340 PepE Peptidase E [Amin 41.3 2.4E+02 0.0051 25.0 8.5 44 269-313 23-66 (224)
340 PF00282 Pyridoxal_deC: Pyrido 41.1 58 0.0013 31.7 5.6 70 353-424 104-191 (373)
341 COG3349 Uncharacterized conser 41.0 33 0.00071 34.3 3.8 35 14-53 1-35 (485)
342 PRK05647 purN phosphoribosylgl 41.0 1.6E+02 0.0035 25.7 7.8 55 14-73 2-58 (200)
343 TIGR00521 coaBC_dfp phosphopan 41.0 30 0.00065 33.8 3.6 44 13-57 3-46 (390)
344 PF05225 HTH_psq: helix-turn-h 40.8 48 0.001 20.9 3.3 27 410-438 1-27 (45)
345 COG0240 GpsA Glycerol-3-phosph 40.6 39 0.00085 31.9 4.1 33 13-50 1-33 (329)
346 COG1492 CobQ Cobyric acid synt 40.6 1.1E+02 0.0024 30.6 7.3 57 84-143 97-164 (486)
347 PF02776 TPP_enzyme_N: Thiamin 40.3 49 0.0011 28.0 4.5 30 349-380 63-98 (172)
348 TIGR02015 BchY chlorophyllide 40.2 3.2E+02 0.0069 27.2 10.7 31 15-50 287-317 (422)
349 KOG0202 Ca2+ transporting ATPa 40.1 2.7E+02 0.0059 30.1 10.2 161 281-464 572-749 (972)
350 PRK13604 luxD acyl transferase 39.8 58 0.0013 30.6 5.1 35 13-47 36-70 (307)
351 PF08357 SEFIR: SEFIR domain; 39.7 37 0.00081 27.8 3.6 32 15-46 2-35 (150)
352 PRK09739 hypothetical protein; 39.7 73 0.0016 27.7 5.6 37 12-48 2-41 (199)
353 PRK07710 acetolactate synthase 39.7 1.2E+02 0.0027 31.4 8.1 28 350-379 78-111 (571)
354 TIGR00118 acolac_lg acetolacta 39.6 1.4E+02 0.003 31.0 8.4 28 350-379 64-97 (558)
355 cd01965 Nitrogenase_MoFe_beta_ 39.6 1.1E+02 0.0024 30.3 7.5 99 12-143 298-396 (428)
356 PRK06276 acetolactate synthase 39.1 1.4E+02 0.0031 31.1 8.4 28 350-379 63-96 (586)
357 PF12695 Abhydrolase_5: Alpha/ 39.0 60 0.0013 25.9 4.7 33 16-48 1-33 (145)
358 cd02034 CooC The accessory pro 38.8 72 0.0016 25.0 4.8 37 15-51 1-37 (116)
359 PRK05299 rpsB 30S ribosomal pr 38.8 97 0.0021 28.3 6.3 31 116-146 158-190 (258)
360 PF08433 KTI12: Chromatin asso 38.8 3.2E+02 0.0068 25.2 9.7 98 16-146 4-107 (270)
361 PRK07313 phosphopantothenoylcy 38.6 2.5E+02 0.0055 24.0 10.6 54 369-423 108-179 (182)
362 PRK04148 hypothetical protein; 38.4 74 0.0016 25.8 4.8 33 12-50 16-48 (134)
363 PRK06835 DNA replication prote 38.4 32 0.0007 32.7 3.3 44 14-57 184-227 (329)
364 TIGR00639 PurN phosphoribosylg 38.2 2.6E+02 0.0057 24.1 8.7 34 14-50 1-36 (190)
365 TIGR02195 heptsyl_trn_II lipop 38.1 1.5E+02 0.0033 28.0 8.0 99 14-144 175-278 (334)
366 CHL00175 minD septum-site dete 37.9 64 0.0014 29.8 5.2 47 5-51 6-54 (281)
367 COG2109 BtuR ATP:corrinoid ade 37.8 2.7E+02 0.0059 24.1 8.6 97 16-126 31-133 (198)
368 TIGR02329 propionate_PrpR prop 37.8 2.1E+02 0.0045 29.4 9.1 110 25-145 37-172 (526)
369 PRK06719 precorrin-2 dehydroge 37.7 50 0.0011 27.5 4.0 33 12-49 12-44 (157)
370 cd01075 NAD_bind_Leu_Phe_Val_D 37.6 51 0.0011 28.8 4.2 35 8-47 23-57 (200)
371 TIGR01380 glut_syn glutathione 37.6 42 0.00092 31.7 4.0 41 14-54 1-44 (312)
372 PRK08322 acetolactate synthase 37.5 1.3E+02 0.0027 31.1 7.8 28 350-379 63-96 (547)
373 COG3195 Uncharacterized protei 37.3 1.8E+02 0.0039 24.4 6.8 75 363-442 88-164 (176)
374 PRK09330 cell division protein 37.3 3.5E+02 0.0076 26.5 10.1 119 9-146 9-137 (384)
375 COG2084 MmsB 3-hydroxyisobutyr 37.0 47 0.001 30.9 4.0 32 14-50 1-32 (286)
376 PLN02695 GDP-D-mannose-3',5'-e 37.0 49 0.0011 32.1 4.4 34 12-49 20-53 (370)
377 cd02065 B12-binding_like B12 b 36.8 55 0.0012 25.6 4.0 37 16-52 2-38 (125)
378 TIGR02114 coaB_strep phosphopa 36.7 31 0.00066 30.9 2.7 29 18-48 18-46 (227)
379 PF03446 NAD_binding_2: NAD bi 36.4 41 0.00089 28.1 3.3 30 14-48 2-31 (163)
380 COG4081 Uncharacterized protei 36.3 79 0.0017 25.1 4.4 41 17-57 7-48 (148)
381 PF03721 UDPG_MGDP_dh_N: UDP-g 36.1 57 0.0012 28.1 4.2 33 14-51 1-33 (185)
382 PRK08229 2-dehydropantoate 2-r 36.0 42 0.00091 32.1 3.8 33 14-51 3-35 (341)
383 COG2120 Uncharacterized protei 36.0 54 0.0012 29.6 4.2 42 9-50 6-47 (237)
384 PRK09841 cryptic autophosphory 35.7 5.9E+02 0.013 27.4 13.9 40 13-52 530-571 (726)
385 PRK07688 thiamine/molybdopteri 35.6 1.1E+02 0.0023 29.4 6.4 34 11-49 22-56 (339)
386 PRK06456 acetolactate synthase 35.6 1.8E+02 0.004 30.1 8.6 28 350-379 68-101 (572)
387 PRK04761 ppnK inorganic polyph 35.4 31 0.00066 31.3 2.5 28 351-380 26-57 (246)
388 PRK10916 ADP-heptose:LPS hepto 35.3 49 0.0011 31.8 4.1 102 15-144 182-288 (348)
389 TIGR01162 purE phosphoribosyla 35.1 2.7E+02 0.0058 23.3 9.8 135 286-445 4-148 (156)
390 PF00551 Formyl_trans_N: Formy 34.8 92 0.002 26.6 5.3 33 14-49 1-35 (181)
391 PRK05708 2-dehydropantoate 2-r 34.8 47 0.001 31.3 3.8 33 13-50 2-34 (305)
392 COG0569 TrkA K+ transport syst 34.7 49 0.0011 29.6 3.7 33 14-51 1-33 (225)
393 PRK00652 lpxK tetraacyldisacch 34.6 75 0.0016 30.2 5.1 38 16-53 52-91 (325)
394 PRK14569 D-alanyl-alanine synt 34.6 81 0.0017 29.5 5.3 37 12-48 2-42 (296)
395 TIGR01005 eps_transp_fam exopo 34.5 3.6E+02 0.0078 29.2 10.9 39 14-52 546-586 (754)
396 PRK11269 glyoxylate carboligas 34.4 1.4E+02 0.0031 31.1 7.6 24 356-379 72-101 (591)
397 COG1763 MobB Molybdopterin-gua 34.3 82 0.0018 26.4 4.7 39 14-52 2-41 (161)
398 PF06506 PrpR_N: Propionate ca 34.2 61 0.0013 27.6 4.1 112 24-146 16-153 (176)
399 PF13450 NAD_binding_8: NAD(P) 34.1 50 0.0011 22.9 2.9 22 31-52 9-30 (68)
400 cd03146 GAT1_Peptidase_E Type 34.1 2.8E+02 0.0061 24.3 8.4 45 267-313 17-64 (212)
401 PF06418 CTP_synth_N: CTP synt 33.9 1E+02 0.0022 28.2 5.4 59 14-72 1-62 (276)
402 TIGR03026 NDP-sugDHase nucleot 33.8 55 0.0012 32.3 4.2 32 14-50 1-32 (411)
403 CHL00194 ycf39 Ycf39; Provisio 33.7 58 0.0013 30.7 4.3 33 14-50 1-33 (317)
404 COG0451 WcaG Nucleoside-diphos 33.7 58 0.0013 30.3 4.3 34 15-52 2-35 (314)
405 PRK11914 diacylglycerol kinase 33.6 92 0.002 29.2 5.6 81 282-380 12-96 (306)
406 PRK04328 hypothetical protein; 33.4 3.3E+02 0.0071 24.6 9.0 44 13-56 23-66 (249)
407 PRK05282 (alpha)-aspartyl dipe 33.4 3.3E+02 0.0072 24.5 8.7 85 268-379 22-120 (233)
408 COG0205 PfkA 6-phosphofructoki 33.4 99 0.0021 29.6 5.6 118 13-142 2-124 (347)
409 CHL00067 rps2 ribosomal protei 33.2 1.4E+02 0.0031 26.7 6.4 32 115-146 161-194 (230)
410 PRK10353 3-methyl-adenine DNA 33.1 1.6E+02 0.0035 25.4 6.3 78 378-458 23-119 (187)
411 PRK08309 short chain dehydroge 33.0 62 0.0013 27.6 3.9 32 14-50 1-32 (177)
412 PRK11064 wecC UDP-N-acetyl-D-m 33.0 60 0.0013 32.1 4.3 33 13-50 3-35 (415)
413 PRK08527 acetolactate synthase 33.0 1.6E+02 0.0034 30.5 7.6 28 350-379 66-99 (563)
414 PTZ00445 p36-lilke protein; Pr 32.9 1.7E+02 0.0038 25.8 6.5 39 103-144 168-206 (219)
415 PF06925 MGDG_synth: Monogalac 32.9 1.1E+02 0.0024 25.6 5.5 23 26-48 1-24 (169)
416 PRK12770 putative glutamate sy 32.8 67 0.0015 30.9 4.6 34 12-50 17-50 (352)
417 PRK13695 putative NTPase; Prov 32.8 2.7E+02 0.0059 23.3 7.9 32 14-45 1-32 (174)
418 PF02780 Transketolase_C: Tran 32.7 74 0.0016 25.1 4.1 37 12-50 8-44 (124)
419 cd03466 Nitrogenase_NifN_2 Nit 32.7 1.2E+02 0.0025 30.3 6.3 25 116-143 373-397 (429)
420 PRK14620 NAD(P)H-dependent gly 32.6 51 0.0011 31.3 3.7 32 14-50 1-32 (326)
421 PRK14618 NAD(P)H-dependent gly 32.6 57 0.0012 31.0 4.0 33 13-50 4-36 (328)
422 PRK13869 plasmid-partitioning 32.5 75 0.0016 31.3 4.9 38 13-50 120-159 (405)
423 cd03789 GT1_LPS_heptosyltransf 32.5 1.4E+02 0.003 27.4 6.6 87 28-145 140-226 (279)
424 TIGR02655 circ_KaiC circadian 32.5 1.9E+02 0.0041 29.3 7.9 46 12-57 262-307 (484)
425 COG2327 WcaK Polysaccharide py 32.5 3E+02 0.0066 26.8 8.7 71 345-425 280-351 (385)
426 PF05762 VWA_CoxE: VWA domain 32.5 93 0.002 27.7 5.1 38 13-50 150-188 (222)
427 PRK08939 primosomal protein Dn 32.2 50 0.0011 31.1 3.5 45 13-57 156-200 (306)
428 PRK13057 putative lipid kinase 32.1 76 0.0016 29.5 4.7 65 297-380 14-82 (287)
429 PLN02778 3,5-epimerase/4-reduc 31.8 57 0.0012 30.5 3.9 31 11-46 7-38 (298)
430 cd01121 Sms Sms (bacterial rad 31.8 92 0.002 30.3 5.3 43 14-56 83-125 (372)
431 COG2894 MinD Septum formation 31.7 82 0.0018 28.0 4.3 38 15-52 3-42 (272)
432 TIGR03880 KaiC_arch_3 KaiC dom 31.6 90 0.002 27.6 5.0 45 13-57 16-60 (224)
433 PRK03359 putative electron tra 31.6 89 0.0019 28.5 4.8 29 116-144 113-147 (256)
434 cd07025 Peptidase_S66 LD-Carbo 31.6 91 0.002 29.0 5.1 73 293-380 46-120 (282)
435 PF04244 DPRP: Deoxyribodipyri 31.5 46 0.001 29.7 2.9 26 26-51 47-72 (224)
436 KOG0081 GTPase Rab27, small G 31.4 1.1E+02 0.0025 25.3 4.8 45 102-146 109-165 (219)
437 TIGR00730 conserved hypothetic 31.3 3.3E+02 0.0072 23.2 8.7 100 268-379 22-133 (178)
438 PRK14092 2-amino-4-hydroxy-6-h 31.3 1E+02 0.0023 25.9 4.8 32 278-309 5-36 (163)
439 cd01983 Fer4_NifH The Fer4_Nif 31.3 1.1E+02 0.0024 22.1 4.7 33 16-48 2-34 (99)
440 TIGR00345 arsA arsenite-activa 31.3 2.1E+02 0.0045 26.6 7.4 23 31-53 3-25 (284)
441 PRK12827 short chain dehydroge 31.1 78 0.0017 28.2 4.6 33 12-48 5-37 (249)
442 PRK13055 putative lipid kinase 31.1 1.5E+02 0.0034 28.2 6.7 82 282-380 6-93 (334)
443 PRK07525 sulfoacetaldehyde ace 31.0 1.9E+02 0.0041 30.2 7.9 28 350-379 68-101 (588)
444 PF00448 SRP54: SRP54-type pro 31.0 98 0.0021 26.9 4.9 40 15-54 3-42 (196)
445 COG0552 FtsY Signal recognitio 30.9 85 0.0018 29.7 4.6 45 13-57 139-183 (340)
446 COG0504 PyrG CTP synthase (UTP 30.9 1.9E+02 0.0041 29.0 7.1 57 14-70 1-60 (533)
447 PF06032 DUF917: Protein of un 30.9 61 0.0013 31.2 3.8 102 18-140 15-120 (353)
448 PF03403 PAF-AH_p_II: Platelet 30.9 45 0.00098 32.5 3.0 42 12-53 98-139 (379)
449 PRK13982 bifunctional SbtC-lik 30.9 62 0.0013 32.5 4.0 44 13-57 70-113 (475)
450 COG2159 Predicted metal-depend 30.8 2.7E+02 0.0058 26.1 8.0 90 268-368 116-210 (293)
451 PF04493 Endonuclease_5: Endon 30.6 93 0.002 27.4 4.6 41 101-144 78-125 (206)
452 TIGR00147 lipid kinase, YegS/R 30.5 2.6E+02 0.0057 25.9 8.1 68 295-380 18-91 (293)
453 PRK08181 transposase; Validate 30.5 56 0.0012 30.1 3.4 45 12-56 105-149 (269)
454 PRK08199 thiamine pyrophosphat 30.5 2.5E+02 0.0055 29.0 8.6 27 350-378 71-103 (557)
455 COG0299 PurN Folate-dependent 30.5 2.3E+02 0.0051 24.6 6.8 118 282-421 53-172 (200)
456 TIGR01915 npdG NADPH-dependent 30.4 56 0.0012 29.0 3.3 31 14-49 1-32 (219)
457 COG0297 GlgA Glycogen synthase 30.1 6E+02 0.013 25.8 14.0 131 280-423 293-441 (487)
458 PF03720 UDPG_MGDP_dh_C: UDP-g 30.1 63 0.0014 24.8 3.2 30 28-57 17-46 (106)
459 PF02606 LpxK: Tetraacyldisacc 30.0 71 0.0015 30.4 4.1 35 19-53 43-77 (326)
460 COG2099 CobK Precorrin-6x redu 29.8 4.2E+02 0.0091 24.1 8.5 37 381-418 182-219 (257)
461 PF09334 tRNA-synt_1g: tRNA sy 29.7 57 0.0012 32.0 3.5 29 24-52 16-47 (391)
462 PRK07236 hypothetical protein; 29.7 59 0.0013 31.7 3.7 36 10-50 3-38 (386)
463 TIGR01011 rpsB_bact ribosomal 29.7 1.7E+02 0.0038 26.1 6.3 32 115-146 155-188 (225)
464 PLN02727 NAD kinase 29.6 90 0.0019 34.0 5.0 57 346-424 739-799 (986)
465 cd02072 Glm_B12_BD B12 binding 29.6 82 0.0018 25.3 3.8 40 15-54 1-40 (128)
466 PF00070 Pyr_redox: Pyridine n 29.3 83 0.0018 22.4 3.6 24 29-52 10-33 (80)
467 PLN02891 IMP cyclohydrolase 29.2 92 0.002 31.5 4.7 48 14-73 23-70 (547)
468 PF13460 NAD_binding_10: NADH( 29.1 64 0.0014 27.2 3.5 44 21-73 4-47 (183)
469 PRK13236 nitrogenase reductase 29.0 94 0.002 29.1 4.7 37 14-50 6-43 (296)
470 PRK04940 hypothetical protein; 29.0 1.3E+02 0.0028 25.8 5.1 30 117-146 62-92 (180)
471 COG2085 Predicted dinucleotide 28.9 88 0.0019 27.5 4.1 35 14-53 2-36 (211)
472 PRK08979 acetolactate synthase 28.9 4.2E+02 0.0091 27.5 9.9 59 356-423 472-533 (572)
473 PRK12829 short chain dehydroge 28.7 99 0.0021 27.9 4.9 36 11-50 9-44 (264)
474 PLN00016 RNA-binding protein; 28.7 72 0.0016 31.0 4.1 36 13-50 52-89 (378)
475 PRK00771 signal recognition pa 28.7 1.2E+02 0.0025 30.3 5.5 42 13-54 95-136 (437)
476 TIGR02201 heptsyl_trn_III lipo 28.6 1.7E+02 0.0038 27.8 6.7 100 14-144 182-287 (344)
477 PRK13278 purP 5-formaminoimida 28.5 5.1E+02 0.011 25.1 9.6 119 268-398 5-137 (358)
478 TIGR00313 cobQ cobyric acid sy 28.4 6.3E+02 0.014 25.5 10.8 27 24-50 10-36 (475)
479 PRK06882 acetolactate synthase 28.4 2.4E+02 0.0052 29.3 8.0 28 350-379 67-100 (574)
480 PF01380 SIS: SIS domain SIS d 28.4 1.4E+02 0.0029 23.5 5.1 35 23-57 62-96 (131)
481 TIGR02482 PFKA_ATP 6-phosphofr 28.3 61 0.0013 30.4 3.3 39 346-384 85-127 (301)
482 TIGR00064 ftsY signal recognit 28.2 1.4E+02 0.003 27.6 5.6 42 13-54 71-113 (272)
483 COG4889 Predicted helicase [Ge 28.2 2.3E+02 0.0051 30.9 7.5 29 20-50 187-215 (1518)
484 cd01840 SGNH_hydrolase_yrhL_li 28.1 1.9E+02 0.0041 23.6 6.0 39 279-318 50-88 (150)
485 PF01372 Melittin: Melittin; 28.1 8.3 0.00018 20.5 -1.4 17 361-377 1-17 (26)
486 PRK14494 putative molybdopteri 28.0 1E+02 0.0022 27.6 4.5 35 14-48 1-36 (229)
487 PLN02948 phosphoribosylaminoim 27.8 5E+02 0.011 27.1 10.1 86 355-447 468-562 (577)
488 PRK08978 acetolactate synthase 27.8 4.5E+02 0.0097 27.1 9.9 98 301-423 411-513 (548)
489 PF06825 HSBP1: Heat shock fac 27.8 81 0.0017 20.9 2.8 48 412-464 2-49 (54)
490 TIGR03837 efp_adjacent_2 conse 27.8 1.1E+02 0.0023 29.5 4.8 42 336-380 244-290 (371)
491 PRK14478 nitrogenase molybdenu 27.5 3.6E+02 0.0078 27.3 8.9 96 1-140 312-415 (475)
492 PRK03767 NAD(P)H:quinone oxido 27.5 1.1E+02 0.0024 26.6 4.6 37 14-50 2-40 (200)
493 PRK13768 GTPase; Provisional 27.5 2.7E+02 0.0058 25.3 7.3 38 15-52 4-41 (253)
494 PRK07454 short chain dehydroge 27.4 1.2E+02 0.0026 26.9 5.1 35 13-50 5-39 (241)
495 TIGR00853 pts-lac PTS system, 27.4 1.7E+02 0.0037 22.0 5.0 38 12-49 2-39 (95)
496 PRK06718 precorrin-2 dehydroge 27.3 88 0.0019 27.4 4.0 34 12-50 9-42 (202)
497 PLN02662 cinnamyl-alcohol dehy 27.3 83 0.0018 29.5 4.2 34 13-50 4-37 (322)
498 PRK08674 bifunctional phosphog 27.2 5.5E+02 0.012 24.4 9.9 56 16-76 80-135 (337)
499 cd06559 Endonuclease_V Endonuc 27.2 69 0.0015 28.2 3.3 39 102-143 83-128 (208)
500 PRK06276 acetolactate synthase 27.2 5E+02 0.011 27.1 10.2 59 356-423 470-531 (586)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-66 Score=502.60 Aligned_cols=440 Identities=50% Similarity=0.906 Sum_probs=347.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
+.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+... ..++++|..+|+++++...+...++..++.
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~---~~~~i~~~~ipdglp~~~~~~~~~~~~~~~ 81 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD---PSSPISIATISDGYDQGGFSSAGSVPEYLQ 81 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC---CCCCEEEEEcCCCCCCcccccccCHHHHHH
Confidence 47999999999999999999999999999999999999765544321 124699999998887622232334556666
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcccc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLLL 172 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (468)
.+.....+.+.+++..+..+..|+|+||+|.+..|+..+|+++|||++.|++++++.+..+.+..... ......+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~~~~~ 156 (449)
T PLN02173 82 NFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSLTLPI 156 (449)
T ss_pred HHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCccCCC
Confidence 66656777888888776443345699999999999999999999999999998877765554321110 0122347
Q ss_pred CCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccccc
Q 012194 173 PGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDKQL 252 (468)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~~~ 252 (468)
||+|.+...+++.++............+.+ ......+++++++||+.+||+...+.+....|++.|||+++........
T Consensus 157 pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~ 235 (449)
T PLN02173 157 KDLPLLELQDLPTFVTPTGSHLAYFEMVLQ-QFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQI 235 (449)
T ss_pred CCCCCCChhhCChhhcCCCCchHHHHHHHH-HHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhccccc
Confidence 888888888888766432222233443444 4556778889999999999999888886655799999997532110000
Q ss_pred CCccccCCcCCC-CChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh
Q 012194 253 EDDKDYGFSMFK-PDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE 331 (468)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 331 (468)
..+...+.++|. ...+.+.+||+.++.+++|||||||+...+.+++.+++.+| .+.+|+|++.....+.+|+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~ 313 (449)
T PLN02173 236 KSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLET 313 (449)
T ss_pred cccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHh
Confidence 011111122332 22346899999998899999999999999999999999999 677899999764444578888888
Q ss_pred c-cCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCC-CCcc
Q 012194 332 T-SQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADE-KGIV 409 (468)
Q Consensus 332 ~-~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~-~~~~ 409 (468)
. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.+..++ ++.+
T Consensus 314 ~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~ 393 (449)
T PLN02173 314 VDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIA 393 (449)
T ss_pred hcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcc
Confidence 7 6889999999999999999999999999999999999999999999999999999999998889999887541 1246
Q ss_pred CHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012194 410 RREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463 (468)
Q Consensus 410 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 463 (468)
+.++|.++|+++|.|++++++|++|+++++..++++.+||++.+++++|++.+.
T Consensus 394 ~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 394 KREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999999999999998878899999999999999999999999999999999874
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=5.4e-66 Score=504.81 Aligned_cols=445 Identities=40% Similarity=0.767 Sum_probs=354.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCC-------CC-CCCCeEEEEcCCCCCCCCCCcc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDS-------SS-SSASIALEAISDGYDQGGSAQA 84 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~-------~~-~~~~i~f~~~~~~~~~~~~~~~ 84 (468)
+.||+++|+++.||++|++.||+.|+.+|..|||++++.+...+.+.. .. ....+.|..+|+++++ +.+..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~-~~~~~ 85 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE-DDPRR 85 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC-Ccccc
Confidence 479999999999999999999999999999999999997665443210 00 0123677777777765 22222
Q ss_pred ccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCC
Q 012194 85 ESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLP 164 (468)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p 164 (468)
.++..++..+.....+.+.++++.+..+..|+++||+|.++.|+..+|+++|||.+.|++++++.++.+.++..+..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~ 165 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFP 165 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcc
Confidence 34444555555556777888887764334566999999999999999999999999999999999888777754432222
Q ss_pred C---CCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecc
Q 012194 165 L---PDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGP 241 (468)
Q Consensus 165 ~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp 241 (468)
. .+....+||+|.+...+++.++.....+....+.+.+ .+....+++++++|||.+||+...+.+....|++.|||
T Consensus 166 ~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iGP 244 (480)
T PLN02555 166 TETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILG-QYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVGP 244 (480)
T ss_pred cccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeCc
Confidence 2 1233468999888888888766432223344454555 55566778899999999999998888866557999999
Q ss_pred cCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCc-
Q 012194 242 TVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESE- 320 (468)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~- 320 (468)
+++... +.+...+...+. .++++.+||+.++++++|||||||+...+.+++.+++.+++..+++|||+++...
T Consensus 245 l~~~~~-----~~~~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~ 318 (480)
T PLN02555 245 LFKMAK-----TPNSDVKGDISK-PADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHK 318 (480)
T ss_pred ccCccc-----cccccccccccc-cchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcc
Confidence 975411 001111222232 2467999999998889999999999999999999999999999999999987421
Q ss_pred -----cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhh
Q 012194 321 -----QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVW 395 (468)
Q Consensus 321 -----~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~ 395 (468)
...+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 319 ~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 319 DSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVF 398 (480)
T ss_pred cccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHh
Confidence 124788888889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeEecCC--CCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 396 KMGLKVPAD--EKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 396 g~G~~l~~~--~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
|+|+.+... .++.++.++|.++|+++|++++|+++|+||+++++..++++.+|||+.+++++||+++.++
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999531 1236899999999999998888889999999999999999999999999999999999865
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-64 Score=493.88 Aligned_cols=429 Identities=31% Similarity=0.512 Sum_probs=339.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
.+.||+++|+++.||++|++.||+.|+.+|+.|||++++.+..... ....+++|..+|+++++...+.. ....++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~----~~~~~i~~~~ip~glp~~~~~~~-~~~~~~ 80 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS----DDFTDFQFVTIPESLPESDFKNL-GPIEFL 80 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc----cCCCCeEEEeCCCCCCccccccc-CHHHHH
Confidence 5679999999999999999999999999999999999987642111 11236999999988776222222 233455
Q ss_pred HHHHHhchHHHHHHHHHhcC-CCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh---ccC--CCCCC
Q 012194 92 EKFWQIGPRSLCELVEKMNG-SVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN---KGL--LKLPL 165 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~-~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~---~~~--~~~p~ 165 (468)
..+.......+.+++.++.. ...|+++||+|.+..|+..+|+++|||++.|++++++.++.+.++. ... .+...
T Consensus 81 ~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T PLN02410 81 HKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKE 160 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccc
Confidence 55555566677777777642 2245699999999999999999999999999999998887666541 111 11111
Q ss_pred --CCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--CCceeecc
Q 012194 166 --PDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--WSLKTIGP 241 (468)
Q Consensus 166 --~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~p~~~vgp 241 (468)
......+|++|++...+++..... ........+.. .. ...+++++++||+++||+...+.+.+. .|+++|||
T Consensus 161 ~~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~-~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGp 236 (451)
T PLN02410 161 PKGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYRN-TV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGP 236 (451)
T ss_pred cccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHHH-Hh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecc
Confidence 112335788887777777654321 12223333332 22 346788999999999999998888664 36999999
Q ss_pred cCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCc-
Q 012194 242 TVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESE- 320 (468)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~- 320 (468)
+.+.. .. +.++++ ...++.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++...
T Consensus 237 l~~~~-------~~---~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~ 305 (451)
T PLN02410 237 LHLVA-------SA---PTSLLE-ENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSV 305 (451)
T ss_pred ccccc-------CC---Cccccc-cchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcc
Confidence 96531 00 111222 1346789999998899999999999999999999999999999999999997431
Q ss_pred -----cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhh
Q 012194 321 -----QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVW 395 (468)
Q Consensus 321 -----~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~ 395 (468)
.+.+|++|.+|.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 306 ~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 306 RGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred cccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 123789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 396 KMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 396 g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
|+|+.+. . .++.++|.++|+++|.++.+++||++|+++++.+++++.+||++..++.+|++.++.
T Consensus 386 ~~G~~~~-~---~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 386 KIGIQVE-G---DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CeeEEeC-C---cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 9999997 3 789999999999999887788999999999999999999999999999999998863
No 4
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.1e-64 Score=491.42 Aligned_cols=442 Identities=33% Similarity=0.628 Sum_probs=336.4
Q ss_pred cCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 10 SCRLVHCLVLSYPAQGHINPLLQFAKR--LDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
...+.||+++|+++.||++|++.||++ |++||++|||++++.+...+++.. .....+.+..+|+++++ +.. .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-~~~~~~~~~~~~~glp~-~~~--~~~ 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-KPRRPVDLVFFSDGLPK-DDP--RAP 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-CCCCceEEEECCCCCCC-Ccc--cCH
Confidence 445689999999999999999999999 569999999999998876654321 11236788878877766 321 233
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCC-
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLP- 166 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~- 166 (468)
..++..+.....+.+.++++. .++|+||+|.++.|+..+|+++|||.+.|++++++.++.+.+.+.....++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~ 155 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLE 155 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccc
Confidence 444454444444444444433 25799999999999999999999999999999998888777653222122221
Q ss_pred --CCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCC
Q 012194 167 --DSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVP 244 (468)
Q Consensus 167 --~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~ 244 (468)
.....+|+++.+...+++.++.... ...+.....+ ......+.+++++||+.++|++..+.+....++++|||+++
T Consensus 156 ~~~~~~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~ 233 (456)
T PLN02210 156 DLNQTVELPALPLLEVRDLPSFMLPSG-GAHFNNLMAE-FADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVS 233 (456)
T ss_pred ccCCeeeCCCCCCCChhhCChhhhcCC-chHHHHHHHH-HHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCc
Confidence 1234578888777778776554321 1212222223 33345567899999999999988888766456999999975
Q ss_pred CcccccccCC-ccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCC
Q 012194 245 SLYLDKQLED-DKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAK 323 (468)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 323 (468)
.......... ....+..+|.. ++++.+|++.++++++|||||||....+.+++++++.+|+..+.+|||+++......
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~ 312 (456)
T PLN02210 234 PFLLGDDEEETLDGKNLDMCKS-DDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQ 312 (456)
T ss_pred hhhcCccccccccccccccccc-chHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcccc
Confidence 3110000000 01111123332 467899999988889999999999988999999999999999999999997542222
Q ss_pred CCcchhhhc-cCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEec
Q 012194 324 LPENFSDET-SQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 324 ~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
.+..+.++. ++|.++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.+.
T Consensus 313 ~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~ 392 (456)
T PLN02210 313 NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMR 392 (456)
T ss_pred chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEe
Confidence 334555555 4888899999999999999999999999999999999999999999999999999999998339999987
Q ss_pred CCC-CCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012194 403 ADE-KGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463 (468)
Q Consensus 403 ~~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 463 (468)
..+ ++.++.++|+++|+++|.+++|++||+||+++++..++++++|||+.+++++|++++.
T Consensus 393 ~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 393 NDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred ccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 431 2368999999999999998878889999999999999999999999999999999885
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.7e-64 Score=490.17 Aligned_cols=429 Identities=28% Similarity=0.493 Sum_probs=335.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
.+.||+++|+++.||++|++.||+.|+.+|++|||++++.+...+.+.. ....+++|..+|++.+. +. ..++..+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~-~~~~~i~~v~lp~g~~~-~~--~~~~~~l~ 80 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL-DPKLGITFMSISDGQDD-DP--PRDFFSIE 80 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc-CCCCCEEEEECCCCCCC-Cc--cccHHHHH
Confidence 3469999999999999999999999999999999999998766554321 01236999999987654 22 12333444
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh----ccCCCC---C
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN----KGLLKL---P 164 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~----~~~~~~---p 164 (468)
..+...+.+.+.++++++... .|+++||+|.+..|+..+|+++|||++.|++++++.++.+.+.. .+.... +
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP 159 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc
Confidence 455445677788888876533 35699999999999999999999999999999988777665542 111111 1
Q ss_pred CCCCc-cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhc------cCCce
Q 012194 165 LPDSQ-LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGK------LWSLK 237 (468)
Q Consensus 165 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~------~~p~~ 237 (468)
....+ ..+||+|.+...+++.+...........+.+.+ .+....+++++++||+.+||+...+.+.. ..+++
T Consensus 160 ~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~ 238 (448)
T PLN02562 160 RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTR-TLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQIL 238 (448)
T ss_pred ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHH-HHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEE
Confidence 11112 257888888888888765432222333455555 55667778899999999999977765432 23499
Q ss_pred eecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcC-CCCHHHHHHHHHHHHhCCCeEEEEE
Q 012194 238 TIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYA-PLKVEEMEELAWGLKATNQYFLWVV 316 (468)
Q Consensus 238 ~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~ 316 (468)
.|||+.+... ....+...+.. ..++.+||+.++++++|||||||+. ..+.+++++++.+|++++++|||++
T Consensus 239 ~iGpl~~~~~-------~~~~~~~~~~~-~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~ 310 (448)
T PLN02562 239 QIGPLHNQEA-------TTITKPSFWEE-DMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVL 310 (448)
T ss_pred EecCcccccc-------cccCCCccccc-hHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999976410 00001111122 3557799999988899999999986 5789999999999999999999999
Q ss_pred eCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhc
Q 012194 317 RESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWK 396 (468)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g 396 (468)
.....+.+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 311 NPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred cCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 75433457888989999999999999999999999999999999999999999999999999999999999999987569
Q ss_pred ceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012194 397 MGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463 (468)
Q Consensus 397 ~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 463 (468)
+|+.+. +++.++|.++|+++|.|+ +||+||++++++++++ .+|||+.+++++|+++++
T Consensus 391 ~g~~~~-----~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRIS-----GFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeC-----CCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 998885 579999999999999986 9999999999998876 567899999999999874
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8.2e-64 Score=486.29 Aligned_cols=438 Identities=34% Similarity=0.664 Sum_probs=340.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcc-ccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFI-SKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEA 89 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~ 89 (468)
++.||+++|+++.||++|++.||+.|+. +|+.|||++++.+ .....+.. ...++++|..++++++.+......+...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-~~~~~i~~~~i~dglp~g~~~~~~~~~~ 80 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-NNVENLSFLTFSDGFDDGVISNTDDVQN 80 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-CCCCCEEEEEcCCCCCCccccccccHHH
Confidence 4569999999999999999999999996 7999999999854 22211110 1123699999998777622122334555
Q ss_pred HHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCc
Q 012194 90 YLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQ 169 (468)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (468)
.+........+.+.+++..+.....|+++||+|.+..|+..+|+++|||++.|++++++.++.+++.+... ...
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~ 154 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSV 154 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCe
Confidence 56666666778888888876533356799999999999999999999999999999999888777664321 123
Q ss_pred cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccc--cCeEEecchhhchHHHHHHHhccCCceeecccCCCcc
Q 012194 170 LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDK--ADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLY 247 (468)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~ 247 (468)
..+||+|.+...+++.++........+.+.+.+ ......+ .+++++|||++||+...+.+.. .|++.|||+.+...
T Consensus 155 ~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~~~~~ 232 (455)
T PLN02152 155 FEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQE-LMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLLPAEI 232 (455)
T ss_pred eecCCCCCCchHHCchhhcCCCCchhHHHHHHH-HHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccCcccc
Confidence 458899888888888876432222223333333 3333322 4689999999999999888865 47999999976411
Q ss_pred cccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCcc------
Q 012194 248 LDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQ------ 321 (468)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~------ 321 (468)
... .....+..++. ...++.+||+.++.+++|||||||+...+.+++++++.+|+.++++|||++.....
T Consensus 233 ~~~---~~~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~ 308 (455)
T PLN02152 233 FTG---SESGKDLSVRD-QSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIE 308 (455)
T ss_pred ccc---cccCccccccc-cchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccc
Confidence 000 00000011111 23579999999988899999999999999999999999999999999999975210
Q ss_pred -C-----CCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhh
Q 012194 322 -A-----KLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVW 395 (468)
Q Consensus 322 -~-----~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~ 395 (468)
. .++++|.++.++|+++++|+||.+||+|+++|+||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 309 ~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 388 (455)
T PLN02152 309 GEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIW 388 (455)
T ss_pred cccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHh
Confidence 0 2367888899999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012194 396 KMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463 (468)
Q Consensus 396 g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 463 (468)
|+|+.+..+.++.++.++|+++|+++|+|+ +++||+||+++++..++++.+||++.+++++|++++.
T Consensus 389 ~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 389 KTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred CceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 778777543233569999999999999764 4579999999999999999999999999999999873
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-62 Score=477.84 Aligned_cols=441 Identities=27% Similarity=0.443 Sum_probs=332.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcccc-ccccCCC---CCCCCeEEEEcCCCCCCCCCCcc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKG--LKVTLVTTYFISK-SLHRDSS---SSSASIALEAISDGYDQGGSAQA 84 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~-~~~~~~~---~~~~~i~f~~~~~~~~~~~~~~~ 84 (468)
|++.||+++|+++.||++|++.||+.|+.+| ..|||++++.+.. .+..... ....+++|..+|+..........
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 4567999999999999999999999999998 9999999987642 1211100 11236999999954321010112
Q ss_pred ccHHHHHHHHHHhchH----HHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccC
Q 012194 85 ESIEAYLEKFWQIGPR----SLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGL 160 (468)
Q Consensus 85 ~~~~~~~~~~~~~~~~----~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 160 (468)
.+...++........+ .+.++++....+..|+++||+|.+..|+..+|+++|||++.|++++++.++.+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 2344333333333433 344444433222245699999999999999999999999999999998888776653211
Q ss_pred CC---C--CCCCCccccCCC-CCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhc--
Q 012194 161 LK---L--PLPDSQLLLPGM-PPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGK-- 232 (468)
Q Consensus 161 ~~---~--p~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~-- 232 (468)
.. . +.......+||+ +.+...+++.+..... . ...+.+ ......+.+++++||+++||+...+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~--~~~~~~-~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~ 235 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--G--YDAYVK-LAILFTKANGILVNSSFDIEPYSVNHFLDEQ 235 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--c--HHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHHhcc
Confidence 11 1 111233568998 6788888887653221 1 222333 44456778899999999999987777643
Q ss_pred c-CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCe
Q 012194 233 L-WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQY 311 (468)
Q Consensus 233 ~-~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~ 311 (468)
. .+++.|||+..... ...+. ...+ ..+++.+||+.++++++|||||||....+.+++++++.+|+.++++
T Consensus 236 ~~p~v~~VGPl~~~~~--~~~~~-----~~~~--~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~ 306 (468)
T PLN02207 236 NYPSVYAVGPIFDLKA--QPHPE-----QDLA--RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYR 306 (468)
T ss_pred CCCcEEEecCCccccc--CCCCc-----cccc--hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCc
Confidence 2 34999999975410 00000 0011 1367999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCc---cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHH
Q 012194 312 FLWVVRESE---QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNG 388 (468)
Q Consensus 312 ~i~~~~~~~---~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na 388 (468)
|||+++... .+.+|++|.++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 307 flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 386 (468)
T PLN02207 307 FLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386 (468)
T ss_pred EEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhH
Confidence 999998532 23478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEecCC----CCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 389 KYIMDVWKMGLKVPAD----EKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 389 ~~l~~~~g~G~~l~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
+++++.||+|+.+..+ .++.++.++|.++|+++|++ ++++||+||+++++.+++++.+|||+.+++++|++++..
T Consensus 387 ~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 387 FLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9988844999977421 11246999999999999973 246999999999999999999999999999999999986
Q ss_pred cC
Q 012194 465 SK 466 (468)
Q Consensus 465 ~~ 466 (468)
-|
T Consensus 466 ~~ 467 (468)
T PLN02207 466 IK 467 (468)
T ss_pred cc
Confidence 54
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.6e-62 Score=478.92 Aligned_cols=445 Identities=27% Similarity=0.390 Sum_probs=331.5
Q ss_pred hcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCC----CCCCCCCCcc
Q 012194 9 ASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISD----GYDQGGSAQA 84 (468)
Q Consensus 9 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~----~~~~~~~~~~ 84 (468)
++..+.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.+.. ....++++..+|. ++++ +.+..
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-~~~~~i~~~~lp~P~~~~lPd-G~~~~ 82 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-SKHPSIETLVLPFPSHPSIPS-GVENV 82 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-ccCCCeeEEeCCCCCcCCCCC-CCcCh
Confidence 4456789999999999999999999999999999999999998876655321 1123577776542 3333 22222
Q ss_pred ccH----HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccC
Q 012194 85 ESI----EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGL 160 (468)
Q Consensus 85 ~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 160 (468)
.++ ..++........+.+.+++... ..|+++||+|.+..|+..+|+++|||++.|++++++.++.+.+++.+.
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 121 1122222223334444444442 235699999999999999999999999999999999998888775322
Q ss_pred CCC--CCC-CCc---cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc-
Q 012194 161 LKL--PLP-DSQ---LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL- 233 (468)
Q Consensus 161 ~~~--p~~-~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~- 233 (468)
... +.. ... ..+||++.++..+++.++............+.+ .+.....++++++||+++||+...+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKD-SFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred cccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHH-HHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 110 111 111 247888888888888766432222233444444 444445667899999999999998888653
Q ss_pred --CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCe
Q 012194 234 --WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQY 311 (468)
Q Consensus 234 --~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~ 311 (468)
.|++.|||+++..... ......|...+. ..+++.+||+.++++++|||||||+...+.+++++++.+|+..+++
T Consensus 239 ~~~~v~~IGPL~~~~~~~---~~~~~~~~~~~~-~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEK---SGLMERGGPSSV-SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred CCCCeEEeCCCccccccc---ccccccCCcccc-cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 3699999997541100 000011111111 2467999999998889999999999988999999999999999999
Q ss_pred EEEEEeCCc-----cCCCCcchhhhcc-CCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchh
Q 012194 312 FLWVVRESE-----QAKLPENFSDETS-QKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQS 385 (468)
Q Consensus 312 ~i~~~~~~~-----~~~~~~~~~~~~~-~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~ 385 (468)
|||+++... ...+|++|.++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 315 flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 394 (477)
T PLN02863 315 FIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQF 394 (477)
T ss_pred EEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccch
Confidence 999997432 2247778877754 5666779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 386 TNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 386 ~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
.||+++++.||+|+.+....++..+.+++.+++++++.+. ++||+||+++++..++++.+||++.+++++|++.+.+.
T Consensus 395 ~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 395 VNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN--QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred hhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 9999987655999999643223568999999999999422 59999999999999999999999999999999999753
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.5e-62 Score=479.20 Aligned_cols=436 Identities=31% Similarity=0.601 Sum_probs=337.2
Q ss_pred cCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 10 SCRLVHCLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
...+.||+++++++.||++|+++||++|+.+ ||+|||++++.+...+++. ....+++|..+|++.+. ......+.
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~--~~~~gi~fv~lp~~~p~-~~~~~~~~ 83 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSD--PKPDNIRFATIPNVIPS-ELVRAADF 83 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhcc--CCCCCEEEEECCCCCCC-ccccccCH
Confidence 3567899999999999999999999999999 9999999999988777743 12347999999976554 33222344
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh----ccCCCC
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN----KGLLKL 163 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~----~~~~~~ 163 (468)
...+..+...+...++++++++. .++|+||+|.++.|+..+|+++|||++.+++++++.++.+.++. .+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 44455444445566777776653 35799999999999999999999999999999987777655542 111111
Q ss_pred CC---CCC-ccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--CCce
Q 012194 164 PL---PDS-QLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--WSLK 237 (468)
Q Consensus 164 p~---~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~p~~ 237 (468)
+. ... ...+|+++.+...+++.+..+. .....+.+.. .+....+++.+++||+++||+...+.+... .|++
T Consensus 161 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 161 ELSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILE-AFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred ccccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHH-HHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 11 011 1137888777777777655432 2233344444 555566778999999999999888877654 3699
Q ss_pred eecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEe
Q 012194 238 TIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVR 317 (468)
Q Consensus 238 ~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 317 (468)
.|||+++.... +.. ..+.+. .....++.+|++.++++++|||||||+...+.+++++++.+|+..+++|||++.
T Consensus 238 ~iGP~~~~~~~----~~~-~~~~~~-~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~ 311 (459)
T PLN02448 238 PIGPSIPYMEL----KDN-SSSSNN-EDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVAR 311 (459)
T ss_pred EecCccccccc----CCC-cccccc-ccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 99999764210 000 000000 011247889999988889999999999888899999999999999999999875
Q ss_pred CCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcc
Q 012194 318 ESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKM 397 (468)
Q Consensus 318 ~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~ 397 (468)
.. ..++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+
T Consensus 312 ~~-----~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 386 (459)
T PLN02448 312 GE-----ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKI 386 (459)
T ss_pred Cc-----hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCc
Confidence 42 1234445567899999999999999999999999999999999999999999999999999999999986699
Q ss_pred eeEecCC--CCCccCHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 398 GLKVPAD--EKGIVRREAIAHCISEILEG--ERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 398 G~~l~~~--~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
|+.+... .++.+++++|+++++++|.+ +++++||+||+++++.+++++.+|||+.+++++|++.+++-
T Consensus 387 G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 387 GWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred eEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 9988632 12367999999999999986 35789999999999999999999999999999999999853
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-61 Score=472.80 Aligned_cols=424 Identities=26% Similarity=0.450 Sum_probs=327.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCC----CCCCCCCCcccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLD-HKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISD----GYDQGGSAQAES 86 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~----~~~~~~~~~~~~ 86 (468)
.+.||+++|+++.||++|++.||+.|+ ++|++|||++++.+...+.+.. ....++++..+|. ++++.. .+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~-~~~~~i~~~~lp~p~~~glp~~~----~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF-LNSTGVDIVGLPSPDISGLVDPS----AH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc-ccCCCceEEECCCccccCCCCCC----cc
Confidence 457999999999999999999999998 7899999999997765442210 1123688998884 332101 12
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhc--cCCCCC
Q 012194 87 IEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNK--GLLKLP 164 (468)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~--~~~~~p 164 (468)
....+......+.+.+++++.++. .++++||+|.++.|+..+|+++|||++.|++++++.++.+.+... .....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 222233333345566677776642 346999999999999999999999999999999888776554421 111110
Q ss_pred --CCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--------C
Q 012194 165 --LPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--------W 234 (468)
Q Consensus 165 --~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--------~ 234 (468)
....+..+||+|.+...+++..+... .. .....+.+ ......+++++++||+.+||+...+.+.+. .
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~-~~-~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVP-DE-PVYRDFVR-HGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCC-Cc-HHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 00123457888877777777533221 11 23334444 445667788999999999999988877542 4
Q ss_pred CceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEE
Q 012194 235 SLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLW 314 (468)
Q Consensus 235 p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 314 (468)
|++.|||+++... . ....+++.+||+.++++++|||||||....+.+++++++.+|+.++++|||
T Consensus 233 ~v~~VGPl~~~~~------~---------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 233 PVYPIGPLCRPIQ------S---------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ceEEecCccCCcC------C---------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 6999999975310 0 012456899999998899999999999999999999999999999999999
Q ss_pred EEeCCc--------------------cCCCCcchhhhccCCe-EEEeecchHHHhcccCcceeeecCCcchHHHHHHcCC
Q 012194 315 VVRESE--------------------QAKLPENFSDETSQKG-LVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGV 373 (468)
Q Consensus 315 ~~~~~~--------------------~~~~~~~~~~~~~~nv-~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~Gv 373 (468)
++.... .+.+|++|.+|..++. ++.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GV 377 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGV 377 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCC
Confidence 996310 1236778888876554 5559999999999999999999999999999999999
Q ss_pred ceeecccccchhHHHHHHH-hhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH--cCCC
Q 012194 374 PMVAMPQWSDQSTNGKYIM-DVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVA--KGGS 450 (468)
Q Consensus 374 P~l~~P~~~DQ~~na~~l~-~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~g~ 450 (468)
|||++|++.||+.||++++ ++ |+|+.++.. ++.++.++|.++|+++|.|+++++||++++++++..++++. +|||
T Consensus 378 P~l~~P~~~DQ~~na~~~~~~~-g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGS 455 (481)
T PLN02992 378 PMIAWPLFAEQNMNAALLSDEL-GIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGV 455 (481)
T ss_pred CEEecCccchhHHHHHHHHHHh-CeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999995 77 999999753 23689999999999999988888999999999999999994 5999
Q ss_pred cHHHHHHHHHHHH
Q 012194 451 SDKNIDDFVANLI 463 (468)
Q Consensus 451 ~~~~~~~~~~~l~ 463 (468)
+.+++++|++++.
T Consensus 456 S~~~l~~~v~~~~ 468 (481)
T PLN02992 456 AHESLCRVTKECQ 468 (481)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999886
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-61 Score=479.68 Aligned_cols=429 Identities=27% Similarity=0.449 Sum_probs=328.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcccccc-------ccCCCCCCCCeEEEEcCCCCCCCCCCc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKG--LKVTLVTTYFISKSL-------HRDSSSSSASIALEAISDGYDQGGSAQ 83 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~-------~~~~~~~~~~i~f~~~~~~~~~~~~~~ 83 (468)
++||+++|+++.||++|++.||+.|+.+| ..|||++++.+.... .+......++++|..+|.+.+. ...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTE- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-ccc-
Confidence 58999999999999999999999999998 889999998764321 1110001236999999976543 111
Q ss_pred cccHHHHHHHHHHhchHHHHHHHHHhcC-----CCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhc
Q 012194 84 AESIEAYLEKFWQIGPRSLCELVEKMNG-----SVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNK 158 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 158 (468)
...+...+.. ....+.+.++++.. ...|+++||+|.++.|+..+|+++|||++.|++++++.++.+.++..
T Consensus 80 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 80 DPTFQSYIDN----QKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1122223333 33444455544421 12345899999999999999999999999999999999988877632
Q ss_pred c--C--CC---CCCCCCccccCCCC-CCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHH
Q 012194 159 G--L--LK---LPLPDSQLLLPGMP-PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWL 230 (468)
Q Consensus 159 ~--~--~~---~p~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 230 (468)
. . .+ ++.......+||++ +++..+++..... ..+...+.+ ......+++++++|++.+||......+
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~-~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLA-QARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHH
Confidence 1 1 11 11111234588874 6776777755422 122333444 455677789999999999999888887
Q ss_pred hc----cCCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHH
Q 012194 231 GK----LWSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLK 306 (468)
Q Consensus 231 ~~----~~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~ 306 (468)
.+ ..+++.|||++.... +.. +. ....++++.+|++.++++++|||||||+...+.+++++++.+|+
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~-----~~~---~~--~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~ 300 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLEN-----SGD---DS--KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALE 300 (481)
T ss_pred HhcccCCCCEEEeCCCccccc-----ccc---cc--ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHH
Confidence 64 235999999943210 000 00 01235679999999888899999999998889999999999999
Q ss_pred hCCCeEEEEEeCCc--------------cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcC
Q 012194 307 ATNQYFLWVVRESE--------------QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLG 372 (468)
Q Consensus 307 ~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~G 372 (468)
.++++|||+++... .+.+|++|.+|.++|+++++|+||.+||+|+++++||||||+||++||+++|
T Consensus 301 ~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 301 RSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred HcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 99999999997521 1125888988999999999999999999999999999999999999999999
Q ss_pred CceeecccccchhHHHH-HHHhhhcceeEecCC--------CCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q 012194 373 VPMVAMPQWSDQSTNGK-YIMDVWKMGLKVPAD--------EKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKE 443 (468)
Q Consensus 373 vP~l~~P~~~DQ~~na~-~l~~~~g~G~~l~~~--------~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (468)
||||++|++.||+.||+ +++++ |+|+.+... .++.++.++|.++|+++|+++ ++||+||+++++.+++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~ 457 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHV 457 (481)
T ss_pred CCEEecCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 99999999999999995 56777 999998641 113689999999999999732 4999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhc
Q 012194 444 AVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
++++||++..++++|+++++.|
T Consensus 458 av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 458 ALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999865
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.4e-61 Score=474.51 Aligned_cols=434 Identities=24% Similarity=0.435 Sum_probs=333.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCcccc----ccccC---CCCCCCCeEEEEcCCCCCCC
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKG----LKVTLVTTYFISK----SLHRD---SSSSSASIALEAISDGYDQG 79 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~~~~~---~~~~~~~i~f~~~~~~~~~~ 79 (468)
|++.||+++|+++.||++|++.||+.|+.+| +.|||++++.... .+... ......+++|..+|.+.++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 4567999999999999999999999999997 7999999876532 12211 00111259999999664321
Q ss_pred CCCccccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhcc
Q 012194 80 GSAQAESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKG 159 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 159 (468)
+. .+...++..+.....+.+++++..+. .|+++||+|.+..|+..+|+++|||++.|++++++.++.+.++...
T Consensus 81 ~~---e~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 81 DA---AGVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred cc---ccHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 21 23334444444455666666666552 3579999999999999999999999999999999988877776321
Q ss_pred --CCC--CCCCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--
Q 012194 160 --LLK--LPLPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL-- 233 (468)
Q Consensus 160 --~~~--~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~-- 233 (468)
... .+....+..+||+|.+...+++.+..... . .....+.. ......+++++++||+++||+...+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~-~-~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKK-S-PNYAWFVY-HGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred cccccCcccccCcceecCCCCCCChHHCCchhcCCC-c-HHHHHHHH-HHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 111 11111234589998888888886554321 1 12233333 344566788999999999999998887653
Q ss_pred ------CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHh
Q 012194 234 ------WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKA 307 (468)
Q Consensus 234 ------~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~ 307 (468)
.+++.|||+.+... . +. ....++++.+||+.++++++||+||||+...+.+++++++.+|+.
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~---~-~~--------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAF---T-PP--------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred cccCCCCceEEeCCCccccc---c-CC--------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 35999999974310 0 00 011246799999999889999999999988899999999999999
Q ss_pred CCCeEEEEEeCCcc------------CCCCcchhhhccCCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCc
Q 012194 308 TNQYFLWVVRESEQ------------AKLPENFSDETSQKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVP 374 (468)
Q Consensus 308 ~~~~~i~~~~~~~~------------~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP 374 (468)
.+++|||++..... +.+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP 379 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 379 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCC
Confidence 99999999974311 126778877777666666 89999999999999999999999999999999999
Q ss_pred eeecccccchhHHHHHHHhhhcceeEecCCC--CCccCHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHcCCC
Q 012194 375 MVAMPQWSDQSTNGKYIMDVWKMGLKVPADE--KGIVRREAIAHCISEILEGE--RGKEIRQNAGKWSNFAKEAVAKGGS 450 (468)
Q Consensus 375 ~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~--~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~ 450 (468)
||++|++.||+.||+++++.||+|+.+..++ ++.++.++|.++|+++|.|+ .++++|++|+++++.+++++.+|||
T Consensus 380 ~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGS 459 (480)
T PLN00164 380 MAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGS 459 (480)
T ss_pred EEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999998866449999986431 12479999999999999874 3789999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc
Q 012194 451 SDKNIDDFVANLISS 465 (468)
Q Consensus 451 ~~~~~~~~~~~l~~~ 465 (468)
+.+++++|++++..+
T Consensus 460 S~~~l~~~v~~~~~~ 474 (480)
T PLN00164 460 SYAALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999865
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.9e-61 Score=465.67 Aligned_cols=430 Identities=26% Similarity=0.426 Sum_probs=330.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcccccc--ccCCCC--CCCCeEEEEcCCCCCCCCC-Cccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHK-GLKVTLVTTYFISKSL--HRDSSS--SSASIALEAISDGYDQGGS-AQAE 85 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~--~~~~~~--~~~~i~f~~~~~~~~~~~~-~~~~ 85 (468)
.+.||+++|+++.||++|++.||+.|+.+ |..|||++++...... ...... ..++++|..+|....+ ++ ....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCc
Confidence 45699999999999999999999999977 9999999887654332 110000 1125999999854332 22 1111
Q ss_pred cHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCc-eEEEcccchHHHHHHHHhh--ccCCC
Q 012194 86 SIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLV-GAAFLTQSCAVDCIYYHVN--KGLLK 162 (468)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP-~i~~~~~~~~~~~~~~~~~--~~~~~ 162 (468)
+....+......+.+.+.++++.+. .++++||+|.+..|+..+|+++||| .+.+++++++.++.+.+++ .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 3332333334456677788877664 2469999999999999999999999 5888888877766665542 11111
Q ss_pred C--CCCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc-------
Q 012194 163 L--PLPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL------- 233 (468)
Q Consensus 163 ~--p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~------- 233 (468)
- .....+..+||+|.+...+++..+... .... ...+.+ ......+++++++|||++||+...+.+.+.
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~-~~~~-~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~ 234 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDR-SDQQ-YKECVR-SGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVM 234 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCC-CcHH-HHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHHhhccccccc
Confidence 0 011123568999888888888655332 1122 233334 445677899999999999999998888653
Q ss_pred -CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeE
Q 012194 234 -WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYF 312 (468)
Q Consensus 234 -~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~ 312 (468)
.|+++|||+++.. . +....+++.+||+.++++++|||||||....+.+++++++.+|+.++++|
T Consensus 235 ~~~v~~VGPl~~~~-------------~--~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~F 299 (470)
T PLN03015 235 KVPVYPIGPIVRTN-------------V--HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRF 299 (470)
T ss_pred CCceEEecCCCCCc-------------c--cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcE
Confidence 4699999997430 0 11123579999999988999999999999999999999999999999999
Q ss_pred EEEEeCC-------------ccCCCCcchhhhccCCeEE-EeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeec
Q 012194 313 LWVVRES-------------EQAKLPENFSDETSQKGLV-VNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 313 i~~~~~~-------------~~~~~~~~~~~~~~~nv~~-~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
||++... ..+.+|++|.+|..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 300 lWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~ 379 (470)
T PLN03015 300 VWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAW 379 (470)
T ss_pred EEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEec
Confidence 9999632 1124778888888777755 4999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHhhhcceeEecC-CCCCccCHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Q 012194 379 PQWSDQSTNGKYIMDVWKMGLKVPA-DEKGIVRREAIAHCISEILEG--ERGKEIRQNAGKWSNFAKEAVAKGGSSDKNI 455 (468)
Q Consensus 379 P~~~DQ~~na~~l~~~~g~G~~l~~-~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 455 (468)
|++.||+.||+++++.||+|+.+.. .+++.++.++|+++|+++|.+ ++|+++|+||+++++..++++.+|||+.+++
T Consensus 380 P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl 459 (470)
T PLN03015 380 PLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSL 459 (470)
T ss_pred ccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999666699999962 122368999999999999963 5678999999999999999999999999999
Q ss_pred HHHHHHHH
Q 012194 456 DDFVANLI 463 (468)
Q Consensus 456 ~~~~~~l~ 463 (468)
++|++++.
T Consensus 460 ~~~~~~~~ 467 (470)
T PLN03015 460 FEWAKRCY 467 (470)
T ss_pred HHHHHhcc
Confidence 99998863
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-61 Score=470.48 Aligned_cols=436 Identities=27% Similarity=0.452 Sum_probs=323.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC----CCCCCCCCCccccH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS----DGYDQGGSAQAESI 87 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~~~~ 87 (468)
.+.||+++|+++.||++|++.||+.|+.||+.|||++++.+...+.+.......+++|..+| +++++ +.+...+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Cccccccc
Confidence 34699999999999999999999999999999999999987655542211122368999988 45654 22222222
Q ss_pred H----HHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh--ccCC
Q 012194 88 E----AYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN--KGLL 161 (468)
Q Consensus 88 ~----~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~--~~~~ 161 (468)
. .++........+.+.+++.++ ++++||+|.+..|+..+|+++|||++.+++++++.++.+.+.. ...-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 1 122222333444444444432 4699999999999999999999999999999988877765431 1110
Q ss_pred CCCCCCCcc-ccCCCCC------CCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc-
Q 012194 162 KLPLPDSQL-LLPGMPP------LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL- 233 (468)
Q Consensus 162 ~~p~~~~~~-~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~- 233 (468)
..+...... .+|++.+ +...+++.+.............+.+ ......+++++++||+.+||+...+.+...
T Consensus 159 ~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~ 237 (472)
T PLN02670 159 DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVR-FGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY 237 (472)
T ss_pred cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHH-HHhhcccCCEEEEeCHHHHhHHHHHHHHHhh
Confidence 111111111 2344311 2334555544322212122222334 444566788999999999999999888664
Q ss_pred -CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeE
Q 012194 234 -WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYF 312 (468)
Q Consensus 234 -~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~ 312 (468)
.|++.|||+.+... .. ..+.. .. ....+++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|
T Consensus 238 ~~~v~~VGPl~~~~~--~~-~~~~~--~~--~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 238 RKPIIPIGFLPPVIE--DD-EEDDT--ID--VKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred CCCeEEEecCCcccc--cc-ccccc--cc--cchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 36999999975310 00 00000 00 0112568999999988899999999999999999999999999999999
Q ss_pred EEEEeCCc------cCCCCcchhhhccCCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchh
Q 012194 313 LWVVRESE------QAKLPENFSDETSQKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQS 385 (468)
Q Consensus 313 i~~~~~~~------~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~ 385 (468)
||++.... ...+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 311 lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 311 FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 99997521 1247888888887777664 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEecCCC-CCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 386 TNGKYIMDVWKMGLKVPADE-KGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 386 ~na~~l~~~~g~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
.||+++++. |+|+.+...+ ++.++.++|+++|+++|.|+.|++||+||+++++.+++ .+...+++++|++.|.+
T Consensus 391 ~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHH
Confidence 999999988 9999997542 23589999999999999987778999999999999996 47889999999999987
Q ss_pred cC
Q 012194 465 SK 466 (468)
Q Consensus 465 ~~ 466 (468)
+.
T Consensus 466 ~~ 467 (472)
T PLN02670 466 NR 467 (472)
T ss_pred hc
Confidence 65
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7e-61 Score=469.39 Aligned_cols=443 Identities=29% Similarity=0.521 Sum_probs=327.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCC---CCCCCeEEEEcC-----CCCCCCCCCc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSS---SSSASIALEAIS-----DGYDQGGSAQ 83 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~---~~~~~i~f~~~~-----~~~~~~~~~~ 83 (468)
++.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.+... .....++|+.+| +++++ +.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Cccc
Confidence 34799999999999999999999999999999999999987654443200 011248999988 46655 3222
Q ss_pred ccc--HHHHHHHHHH---hchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh-
Q 012194 84 AES--IEAYLEKFWQ---IGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN- 157 (468)
Q Consensus 84 ~~~--~~~~~~~~~~---~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~- 157 (468)
... ...+...+.. .....+.+++... ..|+|+||+|.++.|+..+|+++|||++.|++++++..+.+..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 221 1123333322 2334455554432 245699999999999999999999999999999988776544332
Q ss_pred -ccCCCCCCCCCccccCCCCC---CCCCCCCcccccCCCchhHHHHHHHHHhhc-ccccCeEEecchhhchHHHHHHHhc
Q 012194 158 -KGLLKLPLPDSQLLLPGMPP---LEPQDMPSFVYDLGSYPAVSDMVVKYQFDN-IDKADWVLCNTFYELEEEVAEWLGK 232 (468)
Q Consensus 158 -~~~~~~p~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~le~~~~~~~~~ 232 (468)
......+....+..+|++|. +...+++.+..+... . ..+.. .+.. ..+++++++||+.+||+...+.+..
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~---~-~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD---L-DDVRN-KMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCccc---H-HHHHH-HHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 11112222333456788864 555566654322211 1 22222 2222 2346789999999999999888866
Q ss_pred cC--CceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCC
Q 012194 233 LW--SLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQ 310 (468)
Q Consensus 233 ~~--p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~ 310 (468)
.. |++.|||+++.... ..+............+++.+||+.++++++|||||||......+++.+++.+|+.+++
T Consensus 238 ~~~~~v~~VGPL~~~~~~----~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKR----NLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred hcCCcEEEECcccccccc----cccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 43 59999999753110 0000000001111235689999999889999999999999999999999999999999
Q ss_pred eEEEEEeCCcc-----C-CCCcchhhhc-cCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccc
Q 012194 311 YFLWVVRESEQ-----A-KLPENFSDET-SQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSD 383 (468)
Q Consensus 311 ~~i~~~~~~~~-----~-~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~D 383 (468)
+|||++..... . .+|++|.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.|
T Consensus 314 ~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~d 393 (491)
T PLN02534 314 PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAE 393 (491)
T ss_pred CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccccc
Confidence 99999984211 1 2578888775 567777799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeEecCC--------CC-C-ccCHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012194 384 QSTNGKYIMDVWKMGLKVPAD--------EK-G-IVRREAIAHCISEILE--GERGKEIRQNAGKWSNFAKEAVAKGGSS 451 (468)
Q Consensus 384 Q~~na~~l~~~~g~G~~l~~~--------~~-~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~g~~ 451 (468)
|+.||+++++.||+|+.+... ++ + ..+.++|.++|+++|. ++.|+++|+||+++++..++++.+|||+
T Consensus 394 q~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS 473 (491)
T PLN02534 394 QFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSS 473 (491)
T ss_pred HHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 999999999888999987521 01 1 3799999999999997 4567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 012194 452 DKNIDDFVANLISSKS 467 (468)
Q Consensus 452 ~~~~~~~~~~l~~~~~ 467 (468)
.+++++|++++....|
T Consensus 474 ~~nl~~fv~~i~~~~~ 489 (491)
T PLN02534 474 HINLSILIQDVLKQQS 489 (491)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999986554
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-61 Score=466.43 Aligned_cols=424 Identities=27% Similarity=0.426 Sum_probs=321.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCcccccccc---CCCCCCCCeEEEEcCCCCCC-CCCCc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKG--LKVTL--VTTYFISKSLHR---DSSSSSASIALEAISDGYDQ-GGSAQ 83 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~~~~---~~~~~~~~i~f~~~~~~~~~-~~~~~ 83 (468)
.+.||+++|+++.||++|++.||+.|+.+| +.||+ ++++.+.....+ ......++++|..+|.+.+. .....
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 346999999999999999999999999998 55665 444432222111 00011236999999976532 11111
Q ss_pred cccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhc--cCC
Q 012194 84 AESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNK--GLL 161 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~--~~~ 161 (468)
..+...++..........+.+++..+... .|+++||+|.+..|+..+|+++|||++.|++++++.++.+.+.+. +..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 22333333334445666777777776322 456999999999999999999999999999999999888877532 111
Q ss_pred CCC--CCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc---CCc
Q 012194 162 KLP--LPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL---WSL 236 (468)
Q Consensus 162 ~~p--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~---~p~ 236 (468)
+.+ .......+||+|.+...+++.+.... .....+.+.+ ......+++++++||+++||+...+.+... .|+
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v 237 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLER--DDEVYDVFIM-FGKQLSKSSGIIINTFDALENRAIKAITEELCFRNI 237 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCC--chHHHHHHHH-HHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCE
Confidence 111 11123568999888888888765432 1223344444 445566788999999999999998888653 269
Q ss_pred eeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 012194 237 KTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVV 316 (468)
Q Consensus 237 ~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 316 (468)
+.|||+++.. .... +. . ....++.+||+.++++++|||||||+...+.+++++++.+|+.++++|||++
T Consensus 238 ~~vGPl~~~~-------~~~~-~~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 238 YPIGPLIVNG-------RIED-RN-D--NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred EEEeeeccCc-------cccc-cc-c--chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999997531 0000 00 0 1135689999999889999999999999999999999999999999999999
Q ss_pred eCCc--------cCC-CCcchhhhcc-CCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhH
Q 012194 317 RESE--------QAK-LPENFSDETS-QKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQST 386 (468)
Q Consensus 317 ~~~~--------~~~-~~~~~~~~~~-~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~ 386 (468)
.... ... +|++|.+|.. .|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.
T Consensus 307 r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 307 RNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred cCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 8531 122 7788888876 46677799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHH
Q 012194 387 NGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDK 453 (468)
Q Consensus 387 na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 453 (468)
||+++++.||+|+.++..+++.++.++|.++|+++|+|+ +||++++++++..+.++++|||+.+
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999998655999999754223579999999999999985 9999999999999999999999853
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=472.62 Aligned_cols=440 Identities=30% Similarity=0.536 Sum_probs=320.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCC-----CCC--CCeEEEEcC---CCCCCCCCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSS-----SSS--ASIALEAIS---DGYDQGGSA 82 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~-----~~~--~~i~f~~~~---~~~~~~~~~ 82 (468)
++||+++|+++.||++|++.||++|+.|||+|||++++.+...+++... ... ..+.+.++| .++++ +.+
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~e 83 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GCE 83 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Ccc
Confidence 4799999999999999999999999999999999999988765553210 000 134455555 34544 222
Q ss_pred ccc--------cHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHH
Q 012194 83 QAE--------SIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYY 154 (468)
Q Consensus 83 ~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~ 154 (468)
... ....++..+. ...+.+.+.++++.++. ++|+||+|.++.|+..+|+++|||++.|++++++..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 111 1222333333 23345555556655443 4699999999999999999999999999999987766555
Q ss_pred HhhccC--CCCCCCCCccccCCCCC---CCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHH
Q 012194 155 HVNKGL--LKLPLPDSQLLLPGMPP---LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEW 229 (468)
Q Consensus 155 ~~~~~~--~~~p~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 229 (468)
...... ...+.......+|++|. +...+++.. .....+...+.. ......+.+++++|++.+||+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKE-VRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHH-HHhhcccCCEEEEECHHHHHHHHHHH
Confidence 432111 11111112233677752 122222211 112223333334 44456678899999999999987777
Q ss_pred Hhcc--CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHh
Q 012194 230 LGKL--WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKA 307 (468)
Q Consensus 230 ~~~~--~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~ 307 (468)
+.+. .++++|||+.+.... .......+.+.+ ..++++.+|++.++++++|||||||+...+.+.+.+++.+|+.
T Consensus 237 ~~~~~~~~~~~VGPl~~~~~~---~~~~~~~~~~~~-~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 237 YKSFVAKRAWHIGPLSLYNRG---FEEKAERGKKAN-IDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHhccCCCEEEEccccccccc---cccccccCCccc-cchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 7654 359999997643110 000000011111 1246789999998889999999999998889999999999999
Q ss_pred CCCeEEEEEeCCc-----cCCCCcchhhhc-cCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccc
Q 012194 308 TNQYFLWVVRESE-----QAKLPENFSDET-SQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQW 381 (468)
Q Consensus 308 ~~~~~i~~~~~~~-----~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~ 381 (468)
++++|||+++... ...+|++|.++. +.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 313 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~ 392 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG 392 (482)
T ss_pred CCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccch
Confidence 9999999998531 124777887775 6788888999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcceeEecCC-----CCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Q 012194 382 SDQSTNGKYIMDVWKMGLKVPAD-----EKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNID 456 (468)
Q Consensus 382 ~DQ~~na~~l~~~~g~G~~l~~~-----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~ 456 (468)
.||+.||+++++.|++|+.+... ..+.++.++|.++|+++|.|+++++||+||+++++..++++.+||++..+++
T Consensus 393 ~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~ 472 (482)
T PLN03007 393 AEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLN 472 (482)
T ss_pred hhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999988655666554311 1126899999999999999987889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 012194 457 DFVANLIS 464 (468)
Q Consensus 457 ~~~~~l~~ 464 (468)
+|++.+.+
T Consensus 473 ~~v~~~~~ 480 (482)
T PLN03007 473 KFMEELNS 480 (482)
T ss_pred HHHHHHHh
Confidence 99999875
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-60 Score=469.89 Aligned_cols=438 Identities=26% Similarity=0.450 Sum_probs=327.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCcccc-----ccccCCCCCCCCeEEEEcCCCCCCCCCCc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGL---KVTLVTTYFISK-----SLHRDSSSSSASIALEAISDGYDQGGSAQ 83 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-----~~~~~~~~~~~~i~f~~~~~~~~~~~~~~ 83 (468)
++.||+++|+++.||++|++.||+.|+.+|. .||++++..... .+... ....++++|..+|++..+...+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-IASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-ccCCCCeEEEECCCCCCCccccc
Confidence 4579999999999999999999999999984 566666543221 11111 01123699999996542201110
Q ss_pred -cccHHHHHHHHHHhchHHHHHHHHHhcCC----CC-CccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhh
Q 012194 84 -AESIEAYLEKFWQIGPRSLCELVEKMNGS----VV-PVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVN 157 (468)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~-p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 157 (468)
.......+..+...+...+.+.++++..+ .. |+++||+|.++.|+..+|+++|||++.|++++++.++.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11222233334444555666666665321 12 5699999999999999999999999999999998888777653
Q ss_pred cc--CCC--CCC--CCCccccCCC-CCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHH
Q 012194 158 KG--LLK--LPL--PDSQLLLPGM-PPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWL 230 (468)
Q Consensus 158 ~~--~~~--~p~--~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 230 (468)
.. ... .+. ...+..+||+ +.++..+++.+..... ..+.+.. ......+++++++||+++||+...+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVE-IAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHH-HHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 21 111 111 1123457888 4577777765443221 1223334 445567788999999999999988877
Q ss_pred hcc----CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHH
Q 012194 231 GKL----WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLK 306 (468)
Q Consensus 231 ~~~----~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~ 306 (468)
.+. .++++|||+++... ... ...+.....++.+||+.++.+++|||||||+...+.+++.+++.+|+
T Consensus 236 ~~~~~~~p~v~~vGpl~~~~~-------~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 236 SRLPENYPPVYPVGPILSLKD-------RTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HhhcccCCeeEEecccccccc-------ccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 543 35999999976410 000 00111123679999999888899999999998889999999999999
Q ss_pred hCCCeEEEEEeCCc------cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeeccc
Q 012194 307 ATNQYFLWVVRESE------QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQ 380 (468)
Q Consensus 307 ~~~~~~i~~~~~~~------~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~ 380 (468)
.++++|||+++... ...+|++|.+++.+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 307 ~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 307 LVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred hCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 99999999997531 123788898899899999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHH-HHhhhcceeEecCC---C-CCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Q 012194 381 WSDQSTNGKY-IMDVWKMGLKVPAD---E-KGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNI 455 (468)
Q Consensus 381 ~~DQ~~na~~-l~~~~g~G~~l~~~---~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 455 (468)
+.||+.||++ +++. |+|+.+... + ++.++.++|.++|+++|.++ ++||++|+++++.+++++.+||++.+++
T Consensus 387 ~~DQ~~na~~~~~~~-g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 387 YAEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred cccchhhHHHHHHHh-CeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999987 5566 999998642 1 12579999999999999874 4899999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 012194 456 DDFVANLISSKS 467 (468)
Q Consensus 456 ~~~~~~l~~~~~ 467 (468)
++|++++...+|
T Consensus 464 ~~~v~~i~~~~~ 475 (475)
T PLN02167 464 KRFIDDLLGDHS 475 (475)
T ss_pred HHHHHHHHhcCC
Confidence 999999998764
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7e-60 Score=459.16 Aligned_cols=418 Identities=24% Similarity=0.404 Sum_probs=309.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC----CCCCCCCCCccccHH
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS----DGYDQGGSAQAESIE 88 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~~~~~ 88 (468)
+.||+++|+++.||++|+++||+.|+++||+|||++++.+...+++.. ....++++..++ ++++. +.+......
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~ 81 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-LFPDSIVFHPLTIPPVNGLPA-GAETTSDIP 81 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-CCCCceEEEEeCCCCccCCCC-Ccccccchh
Confidence 479999999999999999999999999999999999998877665431 112256666553 34554 222222232
Q ss_pred HHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCC
Q 012194 89 AYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDS 168 (468)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 168 (468)
..+..+.....+.+.+.++++.++. ++|+||+| ++.|+..+|+++|||++.|++++++.++ +.+...+...
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~------ 152 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLG------ 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccC------
Confidence 2223332222333444444444332 46999999 6789999999999999999999987654 3333221111
Q ss_pred ccccCCCCC----CCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--CCceeeccc
Q 012194 169 QLLLPGMPP----LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--WSLKTIGPT 242 (468)
Q Consensus 169 ~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~p~~~vgp~ 242 (468)
..+|++|. +...+++.+ . ........+.........+++++++||+.+||+...+.+... .+++.|||+
T Consensus 153 -~~~pglp~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl 227 (442)
T PLN02208 153 -VPPPGYPSSKVLFRENDAHAL-A---TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPM 227 (442)
T ss_pred -CCCCCCCCcccccCHHHcCcc-c---ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeec
Confidence 12466654 233344432 1 111222222220223556788999999999999988887654 249999999
Q ss_pred CCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCC-c-
Q 012194 243 VPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRES-E- 320 (468)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~-~- 320 (468)
.+.. . . .++.++++.+||+.++++++|||||||....+.+++.+++.+++..+.+++|++... +
T Consensus 228 ~~~~-------~-~------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 228 FPEP-------D-T------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred ccCc-------C-C------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 7541 0 0 022367899999999888999999999998899999999988888888888888743 1
Q ss_pred ---cCCCCcchhhhcc-CCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhc
Q 012194 321 ---QAKLPENFSDETS-QKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWK 396 (468)
Q Consensus 321 ---~~~~~~~~~~~~~-~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g 396 (468)
...+|++|.+|.. .|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||
T Consensus 294 ~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 294 STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 1347888888765 466666999999999999999999999999999999999999999999999999999887449
Q ss_pred ceeEecCCCCCccCHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 397 MGLKVPADEKGIVRREAIAHCISEILEGE--RGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 397 ~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
+|+.+...+++.++.++|.++|+++|+++ .++++|++++++++.+. ++|++..++.+|+++|++
T Consensus 374 ~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 374 VSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred eeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 99999865223499999999999999874 37889999999999985 378999999999999965
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-59 Score=453.32 Aligned_cols=419 Identities=26% Similarity=0.438 Sum_probs=315.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCC--CCeEEEEcC--CCCCCCCCCccccH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSS--ASIALEAIS--DGYDQGGSAQAESI 87 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~--~~i~f~~~~--~~~~~~~~~~~~~~ 87 (468)
.++||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+... .... ..+.+.++| +++++ +.+...+.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~ 81 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NLFPHNIVFRSVTVPHVDGLPV-GTETVSEI 81 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-ccCCCCceEEEEECCCcCCCCC-cccccccC
Confidence 458999999999999999999999999999999999999876554421 0011 137777777 55555 22221111
Q ss_pred H----HHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCC
Q 012194 88 E----AYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKL 163 (468)
Q Consensus 88 ~----~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (468)
. ..+........+.+.++++.+ ++|+||+|. ..|+..+|+++|||++.|++++++.++.+.. ..+...
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~~- 153 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGELG- 153 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccCC-
Confidence 1 112221222334455555442 359999995 8899999999999999999999887766542 111110
Q ss_pred CCCCCccccCCCCC----CCCCCCCcccc--cCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--CC
Q 012194 164 PLPDSQLLLPGMPP----LEPQDMPSFVY--DLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--WS 235 (468)
Q Consensus 164 p~~~~~~~~p~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~p 235 (468)
...||+|. ++..+++.+.. ...........+.+ ......+++++++||+.+||+...+.+... .|
T Consensus 154 ------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~ 226 (453)
T PLN02764 154 ------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLER-VTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKK 226 (453)
T ss_pred ------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHH-HHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCc
Confidence 12467763 44455554321 11111123333333 334566788999999999999988887653 35
Q ss_pred ceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEE
Q 012194 236 LKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWV 315 (468)
Q Consensus 236 ~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 315 (468)
++.|||+++.. +.. ....+++.+||+.++++++|||||||....+.+++.++..+|+..+.+|+|+
T Consensus 227 v~~VGPL~~~~--------~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 227 VLLTGPVFPEP--------DKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred EEEeccCccCc--------ccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 99999997541 000 1124679999999999999999999999999999999999999999999999
Q ss_pred EeCCc-----cCCCCcchhhhccCCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHH
Q 012194 316 VRESE-----QAKLPENFSDETSQKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGK 389 (468)
Q Consensus 316 ~~~~~-----~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~ 389 (468)
+.... ...+|++|.+|..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 293 ~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 293 VKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred EeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 97421 2358899998887777666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 390 YIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG--ERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 390 ~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
++++.||+|+.+..++.+.++.++|+++|+++|++ +.++++|++++++++.+++ ||++.+++++|++++...
T Consensus 373 ~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 373 LLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 99764499999864312368999999999999987 4477899999999999964 799999999999999854
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.2e-58 Score=449.23 Aligned_cols=419 Identities=25% Similarity=0.414 Sum_probs=308.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC----CCCCCCCCCccccH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS----DGYDQGGSAQAESI 87 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~~~~ 87 (468)
.+.||+++|+++.||++|++.||+.|+.+|++|||++++.+...++... ....+++|..++ +++++ +.+...+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l 80 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-LFPDSIVFEPLTLPPVDGLPF-GAETASDL 80 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-cCCCceEEEEecCCCcCCCCC-cccccccc
Confidence 3579999999999999999999999999999999999998776665321 112257885553 45554 22222222
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCC
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPD 167 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (468)
..............+.+.++++.+. .++|+||+|. +.|+..+|+++|||++.|++++++.++.+.+.... ..
T Consensus 81 ~~~~~~~~~~a~~~l~~~l~~~L~~-~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~~----- 152 (446)
T PLN00414 81 PNSTKKPIFDAMDLLRDQIEAKVRA-LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-LG----- 152 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-cC-----
Confidence 1111112222223344444444333 2459999995 88999999999999999999998887776553211 00
Q ss_pred CccccCCCCC----CCCCCC--CcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc--CCceee
Q 012194 168 SQLLLPGMPP----LEPQDM--PSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL--WSLKTI 239 (468)
Q Consensus 168 ~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~--~p~~~v 239 (468)
...|++|. +...+. +.+... ....+.+ ......+++++++||+.+||+...+.+... .|++.|
T Consensus 153 --~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V 223 (446)
T PLN00414 153 --FPPPDYPLSKVALRGHDANVCSLFAN------SHELFGL-ITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLT 223 (446)
T ss_pred --CCCCCCCCCcCcCchhhcccchhhcc------cHHHHHH-HHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEE
Confidence 11355543 111111 111111 1122333 344566788999999999999998887654 259999
Q ss_pred cccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCC
Q 012194 240 GPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRES 319 (468)
Q Consensus 240 gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 319 (468)
||+++... . ..+ ....+++.+||+.++++++|||||||....+.+++.++..+|+..+.+|+|++...
T Consensus 224 GPl~~~~~-------~-~~~----~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~ 291 (446)
T PLN00414 224 GPMLPEPQ-------N-KSG----KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP 291 (446)
T ss_pred cccCCCcc-------c-ccC----cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99975410 0 000 11235688999999999999999999999999999999999999999999999753
Q ss_pred c-----cCCCCcchhhhccCCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHh
Q 012194 320 E-----QAKLPENFSDETSQKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMD 393 (468)
Q Consensus 320 ~-----~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~ 393 (468)
. .+.+|++|.+++.++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++
T Consensus 292 ~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 292 KGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred CCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 1 2358899999998888887 899999999999999999999999999999999999999999999999999975
Q ss_pred hhcceeEecCCCCCccCHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 394 VWKMGLKVPADEKGIVRREAIAHCISEILEGE--RGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 394 ~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
.||+|+.+..++++.++.++|+++++++|.|+ .+++||++++++++.+. ++||++ ..+++|+++++..
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~~ 441 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALENE 441 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHHh
Confidence 44999999754223589999999999999873 36789999999999975 456634 3389999998643
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=4.3e-47 Score=376.91 Aligned_cols=402 Identities=17% Similarity=0.210 Sum_probs=274.7
Q ss_pred CCCcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCC--CCCcc---
Q 012194 11 CRLVHCLVL-SYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQG--GSAQA--- 84 (468)
Q Consensus 11 ~~~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~--~~~~~--- 84 (468)
....||+++ |.++.+|..-+.+|+++|++|||+||++++.... .... ....++..+.++...+.. .....
T Consensus 18 ~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 18 VRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS---HLCGNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred cCcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc---CCCCCEEEEEcCCChHHHHHHHhhhhHH
Confidence 345689865 7789999999999999999999999999875321 1110 012356666654111100 00000
Q ss_pred ---c---cH----HHHHHHHHHh-----chHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHc-CCceEEEcccchH
Q 012194 85 ---E---SI----EAYLEKFWQI-----GPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKF-GLVGAAFLTQSCA 148 (468)
Q Consensus 85 ---~---~~----~~~~~~~~~~-----~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~l-giP~i~~~~~~~~ 148 (468)
. +. ......+... ..+.+.+++ .....+||+||+|.+..|++.+|+.+ ++|.|.+++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L---~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLI---ANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---hcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 00 0001111111 122223333 21124699999999889999999999 9998888775432
Q ss_pred HHHHHHHhhccCCCCCCCCCccccCCCCCCCCCCCCcccccCCCch--------------hHHHHHHHHHhhc-------
Q 012194 149 VDCIYYHVNKGLLKLPLPDSQLLLPGMPPLEPQDMPSFVYDLGSYP--------------AVSDMVVKYQFDN------- 207 (468)
Q Consensus 149 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~------- 207 (468)
.. ..... +..+ ..+.++|.. .....+.+++++|..+.- ...+..++ .+..
T Consensus 171 ~~--~~~~~-gg~p----~~~syvP~~-~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~-~f~~~~~~~~~ 241 (507)
T PHA03392 171 AE--NFETM-GAVS----RHPVYYPNL-WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQ-QFGPDTPTIRE 241 (507)
T ss_pred hh--HHHhh-ccCC----CCCeeeCCc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HcCCCCCCHHH
Confidence 21 11111 1112 223456655 334456777777754421 11112222 2211
Q ss_pred -ccccCeEEecchhhchHHHHHHHhccCC-ceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEE
Q 012194 208 -IDKADWVLCNTFYELEEEVAEWLGKLWS-LKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYV 285 (468)
Q Consensus 208 -~~~~~~~~~~s~~~le~~~~~~~~~~~p-~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~i 285 (468)
..+.+..++|+.+.+++ .++..| +.+|||+..+.. -.++.++++++|++.. ++++|||
T Consensus 242 l~~~~~l~lvns~~~~d~-----~rp~~p~v~~vGgi~~~~~--------------~~~~l~~~l~~fl~~~-~~g~V~v 301 (507)
T PHA03392 242 LRNRVQLLFVNVHPVFDN-----NRPVPPSVQYLGGLHLHKK--------------PPQPLDDYLEEFLNNS-TNGVVYV 301 (507)
T ss_pred HHhCCcEEEEecCccccC-----CCCCCCCeeeecccccCCC--------------CCCCCCHHHHHHHhcC-CCcEEEE
Confidence 12345788999988886 333333 888999854300 0234578899999985 4579999
Q ss_pred EecCcCC---CCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCc
Q 012194 286 SFGSYAP---LKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGW 362 (468)
Q Consensus 286 s~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~ 362 (468)
||||+.. .+.+.++.+++++++++++|||+++.... + ...|+||++.+|+||.+||+|+++++||||||+
T Consensus 302 S~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~ 374 (507)
T PHA03392 302 SFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---A----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGV 374 (507)
T ss_pred ECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---c----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCc
Confidence 9999863 46889999999999999999999875321 1 125789999999999999999888889999999
Q ss_pred chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Q 012194 363 NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAK 442 (468)
Q Consensus 363 ~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~ 442 (468)
||++||+++|||||++|++.||+.||+|++++ |+|+.+++. ++++++|.++|+++|+|+ +||+||+++++.++
T Consensus 375 ~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~---~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~ 447 (507)
T PHA03392 375 QSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTV---TVSAAQLVLAIVDVIENP---KYRKNLKELRHLIR 447 (507)
T ss_pred ccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccC---CcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999987 899999999999999996 99999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhc
Q 012194 443 EAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
+. .-+..+....-++.+..+
T Consensus 448 ~~---p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 448 HQ---PMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred hC---CCCHHHHHHHHHHHHHhC
Confidence 63 223344444555555443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=8.5e-49 Score=396.47 Aligned_cols=394 Identities=26% Similarity=0.344 Sum_probs=222.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCc-ccc-------
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQ-AES------- 86 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~-~~~------- 86 (468)
||+++|. ++||+.++..|+++|++|||+||++++......-. .....+++..++.......... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNP----SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT----------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccc----ccccceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6888885 78999999999999999999999999754322211 1233666776664443311111 000
Q ss_pred -------HHHHHHHH---HHhchHHHH------HHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHH
Q 012194 87 -------IEAYLEKF---WQIGPRSLC------ELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVD 150 (468)
Q Consensus 87 -------~~~~~~~~---~~~~~~~~~------~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~ 150 (468)
....+..+ .......++ ++++.+.. .++|++|+|.+..|+..+|+.+++|.+.+.+......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~ 154 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYD 154 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSC
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccccch
Confidence 11111111 111111111 11111221 2489999999989999999999999987543321100
Q ss_pred HHHHHhhccCCCCCCCCCccccCCCCCCCCCCCCcccccCCCchh--HHHHHHHHHhhcccccCeEEecc---hhhchHH
Q 012194 151 CIYYHVNKGLLKLPLPDSQLLLPGMPPLEPQDMPSFVYDLGSYPA--VSDMVVKYQFDNIDKADWVLCNT---FYELEEE 225 (468)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s---~~~le~~ 225 (468)
..... ......+.++|.. .....+.+.+..|..+.-. .......+......+........ ..++...
T Consensus 155 ------~~~~~-~g~p~~psyvP~~-~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PF00201_consen 155 ------LSSFS-GGVPSPPSYVPSM-FSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSN 226 (500)
T ss_dssp ------CTCCT-SCCCTSTTSTTCB-CCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHH
T ss_pred ------hhhhc-cCCCCChHHhccc-cccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHH
Confidence 00001 0111223345543 2344566777776554321 11222220111111111111111 1111111
Q ss_pred HHHHHhcc-CCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCC-CHHHHHHHHH
Q 012194 226 VAEWLGKL-WSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPL-KVEEMEELAW 303 (468)
Q Consensus 226 ~~~~~~~~-~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~-~~~~~~~~~~ 303 (468)
...++-+. +.+.+.+|+.|.....+..... ..+++++++++|++..+++++|||||||+... +.+..+.+++
T Consensus 227 ~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~------~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~ 300 (500)
T PF00201_consen 227 ASLVLINSHPSLDFPRPLLPNVVEVGGLHIK------PAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAE 300 (500)
T ss_dssp HHHCCSSTEEE----HHHHCTSTTGCGC-S----------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHH
T ss_pred HHHHhhhccccCcCCcchhhcccccCccccc------cccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHH
Confidence 11111111 1122334444432221111111 12456889999999856788999999999853 4455888999
Q ss_pred HHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccc
Q 012194 304 GLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSD 383 (468)
Q Consensus 304 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~D 383 (468)
+|++++++|||++.+... +.+++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 301 ~~~~~~~~~iW~~~~~~~--------~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~D 372 (500)
T PF00201_consen 301 AFENLPQRFIWKYEGEPP--------ENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGD 372 (500)
T ss_dssp HHHCSTTEEEEEETCSHG--------CHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTT
T ss_pred HHhhCCCccccccccccc--------ccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCccc
Confidence 999999999999976311 136789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Q 012194 384 QSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEA 444 (468)
Q Consensus 384 Q~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (468)
|+.||+++++. |+|+.++.. ++|.++|.++|+++|+|+ +|++||+++++.+++.
T Consensus 373 Q~~na~~~~~~-G~g~~l~~~---~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 373 QPRNAARVEEK-GVGVVLDKN---DLTEEELRAAIREVLENP---SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHHT-TSEEEEGGG---C-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT--
T ss_pred CCccceEEEEE-eeEEEEEec---CCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcC
Confidence 99999999999 999999988 999999999999999996 9999999999999864
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-44 Score=353.46 Aligned_cols=358 Identities=22% Similarity=0.278 Sum_probs=245.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCC-c--cccHHHHHHHHH
Q 012194 19 LSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSA-Q--AESIEAYLEKFW 95 (468)
Q Consensus 19 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 95 (468)
+.+|++||++|++.||++|+++||+|+|++++.+.+.+++. |+.|.+++...+..... . ..+....++.+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------CCEEEecCCcCccccccccccCcchHHHHHHHH
Confidence 46789999999999999999999999999999999999954 89999998654321110 0 023344444444
Q ss_pred HhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCccccCCC
Q 012194 96 QIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLLLPGM 175 (468)
Q Consensus 96 ~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~ 175 (468)
......+..+.+.+. ..+ +|+||+|.++.++..+|+++|||+|.+++.+... ... +.. .+
T Consensus 75 ~~~~~~~~~l~~~~~-~~~-pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~---------~~~--~~~-----~~-- 134 (392)
T TIGR01426 75 DEAEDVLPQLEEAYK-GDR-PDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN---------EEF--EEM-----VS-- 134 (392)
T ss_pred HHHHHHHHHHHHHhc-CCC-CCEEEECCccHHHHHHHHHhCCCEEEEehhhccc---------ccc--ccc-----cc--
Confidence 444444444444433 334 5999999988889999999999999886433110 000 000 00
Q ss_pred CCCCCCCC-CcccccCCCchhHHHHHHHHHhhcc------------cccCeEEecchhhchHHHHHHHhccC--Cceeec
Q 012194 176 PPLEPQDM-PSFVYDLGSYPAVSDMVVKYQFDNI------------DKADWVLCNTFYELEEEVAEWLGKLW--SLKTIG 240 (468)
Q Consensus 176 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~le~~~~~~~~~~~--p~~~vg 240 (468)
+.....+ ....... ....+.+.+.+ ..... .+....+..+.+.|++. ...+ ++.++|
T Consensus 135 -~~~~~~~~~~~~~~~-~~~~~~~~~~~-~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~G 206 (392)
T TIGR01426 135 -PAGEGSAEEGAIAER-GLAEYVARLSA-LLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVG 206 (392)
T ss_pred -ccchhhhhhhccccc-hhHHHHHHHHH-HHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEEC
Confidence 0000000 0000000 00111111111 11110 01112344444444431 1112 278889
Q ss_pred ccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCc
Q 012194 241 PTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESE 320 (468)
Q Consensus 241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 320 (468)
|+... +.+...|.....++++||+|+||+.......++.+++++.+.+.++||.++...
T Consensus 207 p~~~~---------------------~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 207 PCIGD---------------------RKEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred CCCCC---------------------ccccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 87543 011122555556778999999998766667889999999999999998886542
Q ss_pred cCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE
Q 012194 321 QAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK 400 (468)
Q Consensus 321 ~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~ 400 (468)
.. .. ....++|+.+.+|+||.++|++|++ +|||||+||++||+++|+|+|++|...||+.||+++++. |+|..
T Consensus 266 ~~---~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~ 338 (392)
T TIGR01426 266 DP---AD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRH 338 (392)
T ss_pred Ch---hH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEE
Confidence 11 11 1225789999999999999999999 999999999999999999999999999999999999999 99999
Q ss_pred ecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Q 012194 401 VPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEA 444 (468)
Q Consensus 401 l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (468)
+... ++++++|.++|.++|+|+ +|+++++++++.++..
T Consensus 339 l~~~---~~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 339 LPPE---EVTAEKLREAVLAVLSDP---RYAERLRKMRAEIREA 376 (392)
T ss_pred eccc---cCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHc
Confidence 9876 889999999999999996 8999999999999863
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.2e-43 Score=347.61 Aligned_cols=362 Identities=17% Similarity=0.145 Sum_probs=238.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCC--C--------c
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGS--A--------Q 83 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~--~--------~ 83 (468)
|||+|++.|+.||++|+++||++|++|||+|+|++++.++..+++. |++|.+++...+.... . .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~------G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA------GLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc------CCceeeCCCCHHHHHhhhhhcccccccc
Confidence 7999999999999999999999999999999999999999888854 8999998864321000 0 0
Q ss_pred cccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCC
Q 012194 84 AESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKL 163 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (468)
..........+.......++++++.+. .++ +|+||+|.+..++..+|+++|||++.+++++....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~------------ 140 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAAR-DWG-PDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS------------ 140 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC-CCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc------------
Confidence 112222333344444455555555543 234 599999998888999999999999998876622110
Q ss_pred CCCCCccccCCCCCCCCCC-CCcc-cccCCCchhHHHHHHHHHhhcccc---------cCeEEecchhhchHHHHHHHhc
Q 012194 164 PLPDSQLLLPGMPPLEPQD-MPSF-VYDLGSYPAVSDMVVKYQFDNIDK---------ADWVLCNTFYELEEEVAEWLGK 232 (468)
Q Consensus 164 p~~~~~~~~p~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~le~~~~~~~~~ 232 (468)
..+ ++..... .... ...............+ ....+.- ....+....+.+.+ .+.
T Consensus 141 -------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 205 (401)
T cd03784 141 -------AFP--PPLGRANLRLYALLEAELWQDLLGAWLRA-RRRRLGLPPLSLLDGSDVPELYGFSPAVLP-----PPP 205 (401)
T ss_pred -------cCC--CccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcccccCCCcEEEecCcccCC-----CCC
Confidence 000 0000000 0000 0000000000111111 1111100 00111110000000 000
Q ss_pred cCC--ceeec-ccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCC-CHHHHHHHHHHHHhC
Q 012194 233 LWS--LKTIG-PTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPL-KVEEMEELAWGLKAT 308 (468)
Q Consensus 233 ~~p--~~~vg-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~ 308 (468)
.++ ..++| ++... +.....+.++..|++. .+++||+|+||+... .......+++++...
T Consensus 206 ~~~~~~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 206 DWPRFDLVTGYGFRDV---------------PYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred CccccCcEeCCCCCCC---------------CCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 001 22222 11110 0001124567778875 467999999999864 456788899999999
Q ss_pred CCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHH
Q 012194 309 NQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNG 388 (468)
Q Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na 388 (468)
+.++||+++...... ...++|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|+..||+.||
T Consensus 269 ~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a 340 (401)
T cd03784 269 GQRAILSLGWGGLGA------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWA 340 (401)
T ss_pred CCeEEEEccCccccc------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHH
Confidence 999999987653321 235789999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q 012194 389 KYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKE 443 (468)
Q Consensus 389 ~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (468)
+++++. |+|+.+... ++++++|.++++++|++ .+++++++.++.+++
T Consensus 341 ~~~~~~-G~g~~l~~~---~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 341 ARVAEL-GAGPALDPR---ELTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHC-CCCCCCCcc---cCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 999999 999999877 78999999999999997 566667777777654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=335.22 Aligned_cols=386 Identities=22% Similarity=0.281 Sum_probs=241.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
+|||+|+..|++||++|+++|+++|.++||+|+|+|++.+++.+++. |+.|..++.. +. ............+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a------g~~f~~~~~~-~~-~~~~~~~~~~~~~ 72 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA------GLAFVAYPIR-DS-ELATEDGKFAGVK 72 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh------Ccceeecccc-CC-hhhhhhhhhhccc
Confidence 48999999999999999999999999999999999999999999965 7778877753 21 1111111111111
Q ss_pred HHH---HhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCc
Q 012194 93 KFW---QIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQ 169 (468)
Q Consensus 93 ~~~---~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (468)
.+. ........+.++-+.+. . +|+|+-|.....+ .+++..++|++.......+.. .....+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~e~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 141 (406)
T COG1819 73 SFRRLLQQFKKLIRELLELLREL-E-PDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPL------PAAGLPLPPVG-- 141 (406)
T ss_pred hhHHHhhhhhhhhHHHHHHHHhc-c-hhhhhcchhhhhh-hhhhhcccchhhhhhhhccCC------cccccCccccc--
Confidence 111 11122233433334433 3 4999998766544 889999999987544332211 10111100000
Q ss_pred cccCCCCCCCCCCCCcccccCCCc-hhH--HHHHHHHHhhccccc---CeEEecchhhchHHHHHHHh---ccCC--cee
Q 012194 170 LLLPGMPPLEPQDMPSFVYDLGSY-PAV--SDMVVKYQFDNIDKA---DWVLCNTFYELEEEVAEWLG---KLWS--LKT 238 (468)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~---~~~~~~s~~~le~~~~~~~~---~~~p--~~~ 238 (468)
.-+.........+....++... ... ....+. .. .+... ...+..+-..++....+... ...| ..+
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 142 --IAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRR-NL-GLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred --ccccccccccccChhhccccccchhhhhhhhhhh-hc-cccccccchHHHhcCCCCccccccccccCCCCCCCCCcCc
Confidence 0000000001011111110000 000 000000 00 00000 00000111111110000000 0001 112
Q ss_pred ecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeC
Q 012194 239 IGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRE 318 (468)
Q Consensus 239 vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 318 (468)
+||+... ...+...|.. .++++||+|+||.... .++++.+++++..++.++|+.++.
T Consensus 218 ~~~~~~~--------------------~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 218 IGPLLGE--------------------AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred ccccccc--------------------ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 2222111 1223333322 4577999999999976 889999999999999999998865
Q ss_pred CccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcce
Q 012194 319 SEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG 398 (468)
Q Consensus 319 ~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G 398 (468)
. .... ..+|+|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|++++ |+|
T Consensus 275 ~-~~~~-----~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G 345 (406)
T COG1819 275 A-RDTL-----VNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAG 345 (406)
T ss_pred c-cccc-----ccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCc
Confidence 2 1111 136789999999999999999999 999999999999999999999999999999999999999 999
Q ss_pred eEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 399 LKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 399 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
..+..+ .++++.|+++|+++|+|+ .|+++++++++.+++. +| .+.+.+.++++.+
T Consensus 346 ~~l~~~---~l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~ 400 (406)
T COG1819 346 IALPFE---ELTEERLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAADLLEEFAR 400 (406)
T ss_pred eecCcc---cCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHh
Confidence 999988 899999999999999996 9999999999999974 33 4555666665443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.2e-39 Score=329.86 Aligned_cols=395 Identities=28% Similarity=0.397 Sum_probs=244.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccccc-CCCC-----CCCCeEEEEcCCCCCCCCCCcc-c
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHR-DSSS-----SSASIALEAISDGYDQGGSAQA-E 85 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~-~~~~-----~~~~i~f~~~~~~~~~~~~~~~-~ 85 (468)
..++++++.++.||++|+..+|++|+++||+||++++......... .... ......+...+++.+. ..... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 4577778888999999999999999999999999998876554431 0000 0001111111111222 11100 0
Q ss_pred cHHHHHHHHHHhchHHHHHHHHHhcC-CCCCccEEEeCCCcchHHHHHHHcC-CceEEEcccchHHHHHHHHhhccCCCC
Q 012194 86 SIEAYLEKFWQIGPRSLCELVEKMNG-SVVPVDCIVYDSFLPWALDVAKKFG-LVGAAFLTQSCAVDCIYYHVNKGLLKL 163 (468)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~p~DlVI~D~~~~~~~~~A~~lg-iP~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (468)
........+.......+++....+.. ...++|++|+|.+..+...++.... ++...+.+..+.......+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~----- 158 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL----- 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc-----
Confidence 11111233333333444443333222 2233899999998767777776665 8888877766554433222110
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccCCCch--hHH-------------HHHHHHHhhcc----cccCeEEecc-hhhch
Q 012194 164 PLPDSQLLLPGMPPLEPQDMPSFVYDLGSYP--AVS-------------DMVVKYQFDNI----DKADWVLCNT-FYELE 223 (468)
Q Consensus 164 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~----~~~~~~~~~s-~~~le 223 (468)
.++|........+.+.+..+..... .+. ..... ..... .....++.++ +..++
T Consensus 159 ------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 159 ------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKE-LLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred ------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hCCCcccccccHHHhhhcCeEEEEc
Confidence 1222221111112233332222110 000 00111 11110 1111223333 34444
Q ss_pred HHHHHHH-hc--cCCceeecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCC--CceEEEEecCcC---CCCH
Q 012194 224 EEVAEWL-GK--LWSLKTIGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAK--GSVVYVSFGSYA---PLKV 295 (468)
Q Consensus 224 ~~~~~~~-~~--~~p~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~I~is~Gs~~---~~~~ 295 (468)
....... +. ..++++|||+..... .. +. ....+|++..+. .++|||||||+. ..+.
T Consensus 232 ~~~~~~~~~~~~~~~v~~IG~l~~~~~--------~~-----~~---~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~ 295 (496)
T KOG1192|consen 232 SNPLLDFEPRPLLPKVIPIGPLHVKDS--------KQ-----KS---PLPLEWLDILDESRHSVVYISFGSMVNSADLPE 295 (496)
T ss_pred cCcccCCCCCCCCCCceEECcEEecCc--------cc-----cc---cccHHHHHHHhhccCCeEEEECCcccccccCCH
Confidence 3333223 22 224889999866510 00 01 123445554433 379999999998 7899
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHH-hcccCcceeeecCCcchHHHHHHcCC
Q 012194 296 EEMEELAWGLKAT-NQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEV-LAHEAAGCFLTHCGWNSTMEALSLGV 373 (468)
Q Consensus 296 ~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~l-L~~~~~~~~I~HgG~~s~~Eal~~Gv 373 (468)
++...++.++++. ++.|||++.......+++++.++-++||...+|+||.++ |.|+++|+||||||+||++||+++||
T Consensus 296 ~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~Gv 375 (496)
T KOG1192|consen 296 EQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGV 375 (496)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCC
Confidence 9999999999999 888999997654332334433223568989999999998 59999999999999999999999999
Q ss_pred ceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q 012194 374 PMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKE 443 (468)
Q Consensus 374 P~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (468)
|+|++|+++||+.||+++++. |.|..+... +++...+..++.++++++ +|+++++++++.+++
T Consensus 376 P~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~---~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 376 PMVCVPLFGDQPLNARLLVRH-GGGGVLDKR---DLVSEELLEAIKEILENE---EYKEAAKRLSEILRD 438 (496)
T ss_pred ceecCCccccchhHHHHHHhC-CCEEEEehh---hcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc
Confidence 999999999999999999999 777676665 666666999999999997 999999999998874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=2.8e-27 Score=226.30 Aligned_cols=321 Identities=16% Similarity=0.141 Sum_probs=202.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
||++.+.|+.||++|.+++|++|.++||+|.|++.....+.-. ....++.|..++..- +....... .+...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l----~~~~g~~~~~~~~~~----l~~~~~~~-~~~~~ 73 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI----IEKENIPYYSISSGK----LRRYFDLK-NIKDP 73 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc----CcccCCcEEEEeccC----cCCCchHH-HHHHH
Confidence 6888888899999999999999999999999999776543211 112378888886321 11111111 22222
Q ss_pred HHhch--HHHHHHHHHhcCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 95 WQIGP--RSLCELVEKMNGSVVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 95 ~~~~~--~~~~~~l~~l~~~~~p~DlVI~D~~~~--~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
..... -....++++. + ||+|+....+. .+..+|..+++|+++...+.
T Consensus 74 ~~~~~~~~~~~~i~~~~----k-Pdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------ 124 (352)
T PRK12446 74 FLVMKGVMDAYVRIRKL----K-PDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------ 124 (352)
T ss_pred HHHHHHHHHHHHHHHhc----C-CCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------------------------
Confidence 22111 1122333333 3 59999887553 37899999999999864432
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
.||+ ..+.+.+ . . ..+..+|++- ...++. ..+.++|+.+.....
T Consensus 125 -~~g~--------------------~nr~~~~-~------a-~~v~~~f~~~----~~~~~~-~k~~~tG~Pvr~~~~-- 168 (352)
T PRK12446 125 -TPGL--------------------ANKIALR-F------A-SKIFVTFEEA----AKHLPK-EKVIYTGSPVREEVL-- 168 (352)
T ss_pred -CccH--------------------HHHHHHH-h------h-CEEEEEccch----hhhCCC-CCeEEECCcCCcccc--
Confidence 2222 0111111 1 1 1133333321 111221 136778876654221
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCH-HHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchh
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKV-EEMEELAWGLKATNQYFLWVVRESEQAKLPENFS 329 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (468)
........+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|+++....+....
T Consensus 169 -------------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~--- 231 (352)
T PRK12446 169 -------------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQ--- 231 (352)
T ss_pred -------------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHh---
Confidence 00111222222323457799999999985332 334444444432 478999988653221100
Q ss_pred hhccCCeEEEeec-ch-HHHhcccCcceeeecCCcchHHHHHHcCCceeecccc-----cchhHHHHHHHhhhcceeEec
Q 012194 330 DETSQKGLVVNWC-PQ-LEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQW-----SDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 330 ~~~~~nv~~~~~v-pq-~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~-----~DQ~~na~~l~~~~g~G~~l~ 402 (468)
.. .++.+.+|+ ++ .++|+++|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++. |+|..+.
T Consensus 232 -~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~ 306 (352)
T PRK12446 232 -NK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLY 306 (352)
T ss_pred -hc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcc
Confidence 11 345667887 53 489999999 99999999999999999999999985 5899999999999 9999998
Q ss_pred CCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHH
Q 012194 403 ADEKGIVRREAIAHCISEILEGERGKEIRQNAGK 436 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 436 (468)
.+ +++++.|.+++.++++|+ +.+++++++
T Consensus 307 ~~---~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 307 EE---DVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred hh---cCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 66 899999999999999885 356555444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=4e-25 Score=210.84 Aligned_cols=306 Identities=19% Similarity=0.275 Sum_probs=190.8
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCC---CCCCccccHHH
Q 012194 14 VHCLVLSYP-AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQ---GGSAQAESIEA 89 (468)
Q Consensus 14 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~---~~~~~~~~~~~ 89 (468)
|||+|...+ |.||+.++++|+++| |||+|+|++.....+.+.. .+.+..++.-... +......+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-------RFPVREIPGLGPIQENGRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-------ccCEEEccCceEeccCCccchHHHHHH
Confidence 899986666 779999999999999 6999999998866555542 2345555432111 01111111111
Q ss_pred HHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCc
Q 012194 90 YLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQ 169 (468)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (468)
... +.......++++.+.+.+. + +|+||+| +.+.+..+|+..|+|++.+........
T Consensus 72 ~~~-~~~~~~~~~~~~~~~l~~~-~-pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------------------- 128 (318)
T PF13528_consen 72 NIR-WLARLARRIRREIRWLREF-R-PDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------------------- 128 (318)
T ss_pred HHH-hhHHHHHHHHHHHHHHHhc-C-CCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc-------------------
Confidence 111 1112233445555555433 3 5999999 445578899999999998876541110
Q ss_pred cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhh-c-ccccCeEEecchhhchHHHHHHHhccCCceeecccCCCcc
Q 012194 170 LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFD-N-IDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLY 247 (468)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~ 247 (468)
+.. . .. . ...+..+..+ ... . .......+..++. .. ........++||++....
T Consensus 129 ---~~~---~---~~-----~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~------~~~~~~~~~~~p~~~~~~ 184 (318)
T PF13528_consen 129 ---PNF---W---LP-----W--DQDFGRLIER-YIDRYHFPPADRRLALSFY-PP------LPPFFRVPFVGPIIRPEI 184 (318)
T ss_pred ---ccC---C---cc-----h--hhhHHHHHHH-hhhhccCCcccceecCCcc-cc------ccccccccccCchhcccc
Confidence 000 0 00 0 0111122222 111 1 2223333333322 10 011112445666654311
Q ss_pred cccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCC-CeEEEEEeCCccCCCCc
Q 012194 248 LDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATN-QYFLWVVRESEQAKLPE 326 (468)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~ 326 (468)
.+.. ..+++.|++++|..... .++++++..+ .++++. +....+
T Consensus 185 -----------------------~~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~~---- 228 (318)
T PF13528_consen 185 -----------------------RELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAAD---- 228 (318)
T ss_pred -----------------------cccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCccc----
Confidence 0000 12345899999998642 6677787776 566655 443111
Q ss_pred chhhhccCCeEEEeec--chHHHhcccCcceeeecCCcchHHHHHHcCCceeeccc--ccchhHHHHHHHhhhcceeEec
Q 012194 327 NFSDETSQKGLVVNWC--PQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQ--WSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 327 ~~~~~~~~nv~~~~~v--pq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~--~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
...+|+.+.++. ...++|+.|++ +|||||+||++|++++|+|+|++|. ..||..||+++++. |+|..++
T Consensus 229 ----~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~ 301 (318)
T PF13528_consen 229 ----PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLS 301 (318)
T ss_pred ----ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcc
Confidence 125789999887 34599999999 9999999999999999999999999 78999999999999 9999998
Q ss_pred CCCCCccCHHHHHHHHHHH
Q 012194 403 ADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~l 421 (468)
.+ +++++.|++.|+++
T Consensus 302 ~~---~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 302 QE---DLTPERLAEFLERL 317 (318)
T ss_pred cc---cCCHHHHHHHHhcC
Confidence 87 99999999998764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=7.3e-24 Score=200.05 Aligned_cols=327 Identities=18% Similarity=0.189 Sum_probs=203.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGL-KVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
|+|++...++.||+.|.++|+++|.++|+ +|.+..+....+.... ...++.|+.++.+... ...........+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~----~~~~~~~~~I~~~~~~-~~~~~~~~~~~~~ 75 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV----KQYGIEFELIPSGGLR-RKGSLKLLKAPFK 75 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec----cccCceEEEEeccccc-ccCcHHHHHHHHH
Confidence 57888899999999999999999999999 5888877666655542 2337888888754433 1211222222222
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
.+.. ....+.++++.. ||+|+.-..+ ..+..+|..+|||.++..+..
T Consensus 76 ~~~~--~~~a~~il~~~k-----Pd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~------------------------ 124 (357)
T COG0707 76 LLKG--VLQARKILKKLK-----PDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA------------------------ 124 (357)
T ss_pred HHHH--HHHHHHHHHHcC-----CCEEEecCCccccHHHHHHHhCCCCEEEEecCC------------------------
Confidence 2222 223555666643 5999986544 557899999999999864433
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
.||.- .....+...+ +..+++..+. .........+|-.+.....
T Consensus 125 -~~G~a----------------nk~~~~~a~~------------V~~~f~~~~~-----~~~~~~~~~tG~Pvr~~~~-- 168 (357)
T COG0707 125 -VPGLA----------------NKILSKFAKK------------VASAFPKLEA-----GVKPENVVVTGIPVRPEFE-- 168 (357)
T ss_pred -Ccchh----------------HHHhHHhhce------------eeeccccccc-----cCCCCceEEecCcccHHhh--
Confidence 44430 0111111111 2223221110 1110114455533222110
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCC-HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchh
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLK-VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFS 329 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (468)
. .+.....+... ..+++|+|..||.+... .+.+..+...+.+ +..++..++.+..+.....+.
T Consensus 169 -------------~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~~~ 232 (357)
T COG0707 169 -------------E-LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELKSAYN 232 (357)
T ss_pred -------------c-cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHHHHHh
Confidence 0 01111111111 15679999999997421 2222223333333 468887777664222211111
Q ss_pred hhccCCeEEEeecchH-HHhcccCcceeeecCCcchHHHHHHcCCceeecccc----cchhHHHHHHHhhhcceeEecCC
Q 012194 330 DETSQKGLVVNWCPQL-EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQW----SDQSTNGKYIMDVWKMGLKVPAD 404 (468)
Q Consensus 330 ~~~~~nv~~~~~vpq~-~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~----~DQ~~na~~l~~~~g~G~~l~~~ 404 (468)
.... +.+.+|..++ .+|+.+|+ +||++|.+|+.|++++|+|+|.+|.. .||..||..+++. |.|..+...
T Consensus 233 -~~~~-~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~ 307 (357)
T COG0707 233 -ELGV-VRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQS 307 (357)
T ss_pred -hcCc-EEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccc
Confidence 0112 7788999876 99999999 99999999999999999999999973 4899999999999 999999987
Q ss_pred CCCccCHHHHHHHHHHHhcCc-cHHHHHHHHHH
Q 012194 405 EKGIVRREAIAHCISEILEGE-RGKEIRQNAGK 436 (468)
Q Consensus 405 ~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~ 436 (468)
++|++++.+.|.++++++ +.++|++++++
T Consensus 308 ---~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~ 337 (357)
T COG0707 308 ---ELTPEKLAELILRLLSNPEKLKAMAENAKK 337 (357)
T ss_pred ---cCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 899999999999999984 12334444433
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=9.3e-23 Score=193.99 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=93.9
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc--hHHHhcccCcceee
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP--QLEVLAHEAAGCFL 357 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp--q~~lL~~~~~~~~I 357 (468)
++.|++.+|+.. ...+++++++.+. +.++++..+ .... ..++|+.+.+|.| ..++|+.|++ +|
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~--~~~~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI 252 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE--VAKN----SYNENVEIRRITTDNFKELIKNAEL--VI 252 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC--CCcc----ccCCCEEEEECChHHHHHHHHhCCE--EE
Confidence 457888888753 2355677777764 223333221 1111 2467899999998 3488999999 99
Q ss_pred ecCCcchHHHHHHcCCceeeccccc--chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 358 THCGWNSTMEALSLGVPMVAMPQWS--DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 358 ~HgG~~s~~Eal~~GvP~l~~P~~~--DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
||||.+|++||+++|+|++++|... ||..||+.+++. |+|+.+... ++ ++.+++.++++|+
T Consensus 253 ~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~---~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 253 THGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK---EL---RLLEAILDIRNMK 315 (321)
T ss_pred ECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh---hH---HHHHHHHhccccc
Confidence 9999999999999999999999854 899999999999 999999865 44 6666777777775
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=1.9e-19 Score=174.56 Aligned_cols=342 Identities=16% Similarity=0.128 Sum_probs=196.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc--cccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS--KSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
|||+|++.+..||...++.|+++|.++||+|++++.+... ...+ ..+++++.++..-.. ..+....+
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~------~~g~~~~~~~~~~~~-----~~~~~~~l 70 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP------KAGIEFHFIPSGGLR-----RKGSLANL 70 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc------cCCCcEEEEeccCcC-----CCChHHHH
Confidence 8999999988999999999999999999999999986531 1222 136777777632111 11111111
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQ 169 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (468)
...... ...+..+.+.+.+ .+||+|++.... ..+..++...++|++......
T Consensus 71 ~~~~~~-~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~----------------------- 124 (357)
T PRK00726 71 KAPFKL-LKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA----------------------- 124 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-----------------------
Confidence 111111 1122233222332 236999998632 345667888999998631100
Q ss_pred cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCcccc
Q 012194 170 LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLD 249 (468)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~ 249 (468)
.+ . ...++..+ ..+.+++.+...+ .. ....++..+|+.+.....
T Consensus 125 --~~-----------~---------~~~r~~~~-------~~d~ii~~~~~~~----~~--~~~~~i~vi~n~v~~~~~- 168 (357)
T PRK00726 125 --VP-----------G---------LANKLLAR-------FAKKVATAFPGAF----PE--FFKPKAVVTGNPVREEIL- 168 (357)
T ss_pred --Cc-----------c---------HHHHHHHH-------HhchheECchhhh----hc--cCCCCEEEECCCCChHhh-
Confidence 00 0 01111111 2233333322111 01 111236666654433110
Q ss_pred cccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCC--eEEEEEeCCccCCCCcc
Q 012194 250 KQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQ--YFLWVVRESEQAKLPEN 327 (468)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~ 327 (468)
.+... -.+ +...+..++|++..|+... ......+.+++.+... .+++.++....+.+...
T Consensus 169 --------------~~~~~-~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~ 230 (357)
T PRK00726 169 --------------ALAAP-PAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAA 230 (357)
T ss_pred --------------cccch-hhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHH
Confidence 00000 011 1111234466665555432 1122333366655433 44555555432222111
Q ss_pred hhhhccCCeEEEeecc-hHHHhcccCcceeeecCCcchHHHHHHcCCceeeccc----ccchhHHHHHHHhhhcceeEec
Q 012194 328 FSDETSQKGLVVNWCP-QLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 328 ~~~~~~~nv~~~~~vp-q~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
. + ..-++.+.+|+. ..++|+.+|+ +|+|+|.++++||+++|+|+|++|. ..+|..|+..+.+. |.|..+.
T Consensus 231 ~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~ 305 (357)
T PRK00726 231 Y-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIP 305 (357)
T ss_pred h-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEE
Confidence 1 1 233478889995 4599999999 9999999999999999999999997 36899999999999 9999998
Q ss_pred CCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 012194 403 ADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVAN 461 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (468)
.+ ++++++|.+++.++++|+ +++++..+-+.... +.++..+.++.+.+.
T Consensus 306 ~~---~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 306 QS---DLTPEKLAEKLLELLSDP---ERLEAMAEAARALG----KPDAAERLADLIEEL 354 (357)
T ss_pred cc---cCCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcC----CcCHHHHHHHHHHHH
Confidence 77 678999999999999996 55554444333332 234434444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=1.4e-18 Score=168.29 Aligned_cols=315 Identities=18% Similarity=0.161 Sum_probs=183.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
||++.+.++.||+...+.|++.|.++||+|++++......... ....++++..++..... . ......+..+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 71 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARL----VPKAGIPLHTIPVGGLR-R----KGSLKKLKAP 71 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc----ccccCCceEEEEecCcC-C----CChHHHHHHH
Confidence 5889999999999999999999999999999998764322111 11235777777632111 0 1111111111
Q ss_pred HHh--chHHHHHHHHHhcCCCCCccEEEeCCC--cchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 95 WQI--GPRSLCELVEKMNGSVVPVDCIVYDSF--LPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 95 ~~~--~~~~~~~~l~~l~~~~~p~DlVI~D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
... ....+..++++. +||+|++... ...+..+|...++|++......
T Consensus 72 ~~~~~~~~~~~~~i~~~-----~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------ 122 (350)
T cd03785 72 FKLLKGVLQARKILKKF-----KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------ 122 (350)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------------------------
Confidence 111 111233333332 3599998753 2446778899999998632100
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
.++ ...++. ....+.+++.+....+. .+ ..++..+|+.+.....
T Consensus 123 -~~~--------------------~~~~~~-------~~~~~~vi~~s~~~~~~-----~~-~~~~~~i~n~v~~~~~-- 166 (350)
T cd03785 123 -VPG--------------------LANRLL-------ARFADRVALSFPETAKY-----FP-KDKAVVTGNPVREEIL-- 166 (350)
T ss_pred -Ccc--------------------HHHHHH-------HHhhCEEEEcchhhhhc-----CC-CCcEEEECCCCchHHh--
Confidence 000 000111 11234445444322211 11 1125556654332110
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCC-HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchh
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLK-VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFS 329 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (468)
.+ ... .+.+...+++++|++..|+..... .+.+..++..+.+.+..+++.++....+.+....
T Consensus 167 -------------~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~- 230 (350)
T cd03785 167 -------------AL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAY- 230 (350)
T ss_pred -------------hh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHH-
Confidence 00 011 112222234446666666654211 1222233333433344555566554222121111
Q ss_pred hhccCCeEEEeec-chHHHhcccCcceeeecCCcchHHHHHHcCCceeeccc----ccchhHHHHHHHhhhcceeEecCC
Q 012194 330 DETSQKGLVVNWC-PQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNGKYIMDVWKMGLKVPAD 404 (468)
Q Consensus 330 ~~~~~nv~~~~~v-pq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~l~~~~g~G~~l~~~ 404 (468)
+...+|+.+.+|+ ...++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |+|..+...
T Consensus 231 ~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~ 307 (350)
T cd03785 231 EELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQE 307 (350)
T ss_pred hccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecC
Confidence 1124689999998 44599999999 9999999999999999999999986 46799999999999 999999865
Q ss_pred CCCccCHHHHHHHHHHHhcCc
Q 012194 405 EKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 405 ~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+.+++++.+++.++++|+
T Consensus 308 ---~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 308 ---ELTPERLAAALLELLSDP 325 (350)
T ss_pred ---CCCHHHHHHHHHHHhcCH
Confidence 578999999999999885
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=149.41 Aligned_cols=333 Identities=15% Similarity=0.173 Sum_probs=198.3
Q ss_pred CCCcEEEEEcCCCc--cCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCC-----CC
Q 012194 11 CRLVHCLVLSYPAQ--GHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQG-----GS 81 (468)
Q Consensus 11 ~~~~~il~~~~~~~--GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~-----~~ 81 (468)
++.+||+|++.-+. ||+..++.+|+.|++. |.+|+++++..-..-.. ...|+.|+.+|.-+... ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~-----~~~gVd~V~LPsl~k~~~G~~~~~ 81 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP-----GPAGVDFVKLPSLIKGDNGEYGLV 81 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC-----CcccCceEecCceEecCCCceeee
Confidence 34569999998755 9999999999999997 99999999876655554 34699999999532210 11
Q ss_pred CccccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCC
Q 012194 82 AQAESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLL 161 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~ 161 (468)
+...+..+..+ + - .+++..-.+..+| |++|+|.+-. ++ ..+. .|.+ .++....
T Consensus 82 d~~~~l~e~~~-~---R----s~lil~t~~~fkP-Di~IVd~~P~-Gl-r~EL--~ptL-------------~yl~~~~- 134 (400)
T COG4671 82 DLDGDLEETKK-L---R----SQLILSTAETFKP-DIFIVDKFPF-GL-RFEL--LPTL-------------EYLKTTG- 134 (400)
T ss_pred ecCCCHHHHHH-H---H----HHHHHHHHHhcCC-CEEEEecccc-ch-hhhh--hHHH-------------HHHhhcC-
Confidence 11222222221 1 1 2222222233345 9999996643 31 1110 0110 0000000
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHH-HhccC--Ccee
Q 012194 162 KLPLPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEW-LGKLW--SLKT 238 (468)
Q Consensus 162 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~-~~~~~--p~~~ 238 (468)
+ ..+.++ -...+.+....+.+..........+ +++ .+++.+.+.+-...... +.... .+.+
T Consensus 135 t-------~~vL~l--r~i~D~p~~~~~~w~~~~~~~~I~r-~yD------~V~v~GdP~f~d~~~~~~~~~~i~~k~~y 198 (400)
T COG4671 135 T-------RLVLGL--RSIRDIPQELEADWRRAETVRLINR-FYD------LVLVYGDPDFYDPLTEFPFAPAIRAKMRY 198 (400)
T ss_pred C-------cceeeh--HhhhhchhhhccchhhhHHHHHHHH-hhe------EEEEecCccccChhhcCCccHhhhhheeE
Confidence 0 000111 0112222222222222333334444 333 44555555443211111 00000 2677
Q ss_pred ecccCCCcccccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHh-CCCe--EEEE
Q 012194 239 IGPTVPSLYLDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKA-TNQY--FLWV 315 (468)
Q Consensus 239 vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i~~ 315 (468)
+|.+ .... +.... +. ... +++..|++|-|.... ..+++...++|-.- .+.+ .+++
T Consensus 199 tG~v-q~~~-----~~~~~---------p~-----~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~iv 256 (400)
T COG4671 199 TGFV-QRSL-----PHLPL---------PP-----HEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIV 256 (400)
T ss_pred eEEe-eccC-----cCCCC---------CC-----cCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEE
Confidence 8866 2211 11100 00 011 445589999887653 56677777777544 3333 4555
Q ss_pred EeCCccCCCCcc----hhhhcc--CCeEEEeecchH-HHhcccCcceeeecCCcchHHHHHHcCCceeecccc---cchh
Q 012194 316 VRESEQAKLPEN----FSDETS--QKGLVVNWCPQL-EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQW---SDQS 385 (468)
Q Consensus 316 ~~~~~~~~~~~~----~~~~~~--~nv~~~~~vpq~-~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~---~DQ~ 385 (468)
+|+. .|.. +....+ +++.+..|-.+. .+++.++. +|+-||+||++|-|.+|+|.+++|.. .+|-
T Consensus 257 tGP~----MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQl 330 (400)
T COG4671 257 TGPF----MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQL 330 (400)
T ss_pred eCCC----CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHH
Confidence 5554 3432 222334 889999999876 99999999 99999999999999999999999985 4999
Q ss_pred HHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 386 TNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 386 ~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
.-|.|++++ |+.-.+.++ +++++.+.+++...++
T Consensus 331 iRA~Rl~~L-GL~dvL~pe---~lt~~~La~al~~~l~ 364 (400)
T COG4671 331 IRAQRLEEL-GLVDVLLPE---NLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHHhc-CcceeeCcc---cCChHHHHHHHHhccc
Confidence 999999999 999999998 9999999999999998
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=2e-16 Score=152.92 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=170.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc--ccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK--SLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
|||+|++.+..||+...+.|+++|.++||+|++++.+.... ..+ ..++.++.++..-.. .......+
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~------~~g~~~~~i~~~~~~-----~~~~~~~l 69 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP------KAGIEFYFIPVGGLR-----RKGSFRLI 69 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc------cCCCceEEEeccCcC-----CCChHHHH
Confidence 58999999999999988899999999999999998744311 111 136777777632111 11122222
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQ 169 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (468)
...... ...+..+.+.+.+ .+||+|++.... ..+..++..+++|.+......
T Consensus 70 ~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~----------------------- 123 (348)
T TIGR01133 70 KTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA----------------------- 123 (348)
T ss_pred HHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-----------------------
Confidence 221111 1112222222222 235999987543 335567888999987421100
Q ss_pred cccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCcccc
Q 012194 170 LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLD 249 (468)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~ 249 (468)
.+ ....++.. ...+.+++.+...-+. + ....+|.-+.....
T Consensus 124 --~~--------------------~~~~~~~~-------~~~d~ii~~~~~~~~~-----~----~~~~i~n~v~~~~~- 164 (348)
T TIGR01133 124 --VP--------------------GLTNKLLS-------RFAKKVLISFPGAKDH-----F----EAVLVGNPVRQEIR- 164 (348)
T ss_pred --Cc--------------------cHHHHHHH-------HHhCeeEECchhHhhc-----C----CceEEcCCcCHHHh-
Confidence 00 00111111 1234444444321111 1 12334432221000
Q ss_pred cccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHH---hCCCeEEEEEeCCccCCCCc
Q 012194 250 KQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLK---ATNQYFLWVVRESEQAKLPE 326 (468)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~ 326 (468)
.+ +.. .+.+.-.+++++|.+..|+... ......+.+++. ..+.++++..+....+.+..
T Consensus 165 --------------~~-~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~ 226 (348)
T TIGR01133 165 --------------SL-PVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDLEKVKN 226 (348)
T ss_pred --------------cc-cch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchHHHHHH
Confidence 00 000 0112111233455444455432 122222334443 33456665554432211111
Q ss_pred chhhhccCCeEEEeec--chHHHhcccCcceeeecCCcchHHHHHHcCCceeecccc---cchhHHHHHHHhhhcceeEe
Q 012194 327 NFSDETSQKGLVVNWC--PQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQW---SDQSTNGKYIMDVWKMGLKV 401 (468)
Q Consensus 327 ~~~~~~~~nv~~~~~v--pq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~---~DQ~~na~~l~~~~g~G~~l 401 (468)
..+..+- ..++.|. ....+|+.+|+ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++. |.|..+
T Consensus 227 -~~~~~~l-~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~ 301 (348)
T TIGR01133 227 -VYQELGI-EAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVI 301 (348)
T ss_pred -HHhhCCc-eEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEE
Confidence 0111110 1222333 45699999999 99999988999999999999999873 4788899999999 999988
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCc
Q 012194 402 PADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 402 ~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
... +.++++|.+++.++++|+
T Consensus 302 ~~~---~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 302 RQK---ELLPEKLLEALLKLLLDP 322 (348)
T ss_pred ecc---cCCHHHHHHHHHHHHcCH
Confidence 766 667999999999999986
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=2.3e-16 Score=153.35 Aligned_cols=348 Identities=13% Similarity=0.053 Sum_probs=189.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEK 93 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~ 93 (468)
.||++...++.||++|. +|+++|.++|++|.|++.... ..++. ....++.+..++ . ..+.+.+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~--g~~~~~~~~~l~----v------~G~~~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE--GCEVLYSMEELS----V------MGLREVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC--cCccccChHHhh----h------ccHHHHHHH
Confidence 58999999999999999 999999999999999986533 22211 001122333222 1 111112222
Q ss_pred HHHhchHHHHHHHHHhcCCCCCccEEEe-CCCcch--HHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 94 FWQIGPRSLCELVEKMNGSVVPVDCIVY-DSFLPW--ALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~~~~p~DlVI~-D~~~~~--~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
+.. ....+.++.+.+.+. + ||+||. |+.... ....|+.+|+|++.+. +|-. .
T Consensus 71 ~~~-~~~~~~~~~~~l~~~-k-Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~---------------------w 125 (385)
T TIGR00215 71 LGR-LLKIRKEVVQLAKQA-K-PDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV---------------------W 125 (385)
T ss_pred HHH-HHHHHHHHHHHHHhc-C-CCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH---------------------h
Confidence 221 111223333333332 3 599995 542323 3348899999998753 2200 0
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
.++ .. ....+.+.... +++ ++ +.+.+... ....+..++|.-+.+..
T Consensus 126 aw~---------------~~-~~r~l~~~~d~-----------v~~-~~-~~e~~~~~--~~g~~~~~vGnPv~~~~--- 171 (385)
T TIGR00215 126 AWR---------------KW-RAKKIEKATDF-----------LLA-IL-PFEKAFYQ--KKNVPCRFVGHPLLDAI--- 171 (385)
T ss_pred hcC---------------cc-hHHHHHHHHhH-----------hhc-cC-CCcHHHHH--hcCCCEEEECCchhhhc---
Confidence 000 00 01112222221 122 22 22221211 11134667885433211
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhC-----CCeEEEEEeCCc-cCCC
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKAT-----NQYFLWVVRESE-QAKL 324 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~-~~~~ 324 (468)
.. ..+......+-+.-.+++++|++-.||....-......+++++..+ +.++++...... ...+
T Consensus 172 --~~--------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~ 241 (385)
T TIGR00215 172 --PL--------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQF 241 (385)
T ss_pred --cc--------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 00 0011222222222234556888878887542123344455544332 335554432221 1101
Q ss_pred Ccchhhhc--cCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeec----cccc---------chhHHHH
Q 012194 325 PENFSDET--SQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAM----PQWS---------DQSTNGK 389 (468)
Q Consensus 325 ~~~~~~~~--~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~----P~~~---------DQ~~na~ 389 (468)
+.+.+.. ..++.+..+ ....+|+.+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+.
T Consensus 242 -~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~n 316 (385)
T TIGR00215 242 -EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPN 316 (385)
T ss_pred -HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccH
Confidence 1111111 223333322 33479999999 9999999988 999999999999 7642 3888999
Q ss_pred HHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc----c-HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 012194 390 YIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE----R-GKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDF 458 (468)
Q Consensus 390 ~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~----~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 458 (468)
.+... ++...+... ++|++.|.+.+.++|+|+ + .+++++...++++.+. +.|.+.+..+.+
T Consensus 317 il~~~-~~~pel~q~---~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i 382 (385)
T TIGR00215 317 ILANR-LLVPELLQE---ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAV 382 (385)
T ss_pred HhcCC-ccchhhcCC---CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 99999 999888766 899999999999999986 3 3566666666666553 345555555444
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=2.6e-15 Score=146.92 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=99.2
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhC-CCeEEEEEeCCcc--CCCCcchhhhccCCeEEEeecchH-HHhcccCcc
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKAT-NQYFLWVVRESEQ--AKLPENFSDETSQKGLVVNWCPQL-EVLAHEAAG 354 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~~~nv~~~~~vpq~-~lL~~~~~~ 354 (468)
++++|++..|+.... ..+..+++++.+. +.+++++++.+.. +.+ ....+..++|+.+.+|+++. ++++.+|+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l-~~~~~~~~~~v~~~g~~~~~~~l~~~aD~- 276 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEALKQSL-EDLQETNPDALKVFGYVENIDELFRVTSC- 276 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHH-HHHHhcCCCcEEEEechhhHHHHHHhccE-
Confidence 456788877877532 2345566666554 5677776654321 111 11112234689999999875 89999999
Q ss_pred eeeecCCcchHHHHHHcCCceeec-ccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 355 CFLTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 355 ~~I~HgG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+... +.+++.+++.++++|+
T Consensus 277 -~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 277 -MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALLQDD 339 (380)
T ss_pred -EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHHCCH
Confidence 99999988999999999999884 6777788999999999 9887543 6799999999999986
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=3e-15 Score=138.77 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=78.6
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHhcccCcce
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVLAHEAAGC 355 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~~~~ 355 (468)
+.|++++|...... ....+++++.+. +.++.+++|.... ..+.+.+. ..+|+.+..++++. ++|+.+|+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl-- 244 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--NLDELKKFAKEYPNIILFIDVENMAELMNEADL-- 244 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--
Confidence 57999999765422 445666777654 4567777766422 11122111 24689999999987 99999999
Q ss_pred eeecCCcchHHHHHHcCCceeecccccchhHHHHHH
Q 012194 356 FLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYI 391 (468)
Q Consensus 356 ~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l 391 (468)
+||+|| +|+.|+++.|+|+|++|...+|..||+.+
T Consensus 245 ~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 245 AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 999999 99999999999999999999999999753
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=1.8e-14 Score=140.97 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhC-----CCeEEEEEeCCccCCCCcchhhh---c-cCCeEEEeecchHHHhc
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKAT-----NQYFLWVVRESEQAKLPENFSDE---T-SQKGLVVNWCPQLEVLA 349 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~---~-~~nv~~~~~vpq~~lL~ 349 (468)
++++|++..||...........+++++..+ +.+++++.+.... .+.+.+. . .-++.+.+. .-..+++
T Consensus 185 ~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~---~~~~~~~~~~~~~~~v~~~~~-~~~~~~~ 260 (380)
T PRK00025 185 DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR---REQIEEALAEYAGLEVTLLDG-QKREAMA 260 (380)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh---HHHHHHHHhhcCCCCeEEEcc-cHHHHHH
Confidence 345666666765432112234445544322 3467766542211 1112111 1 223433321 2358999
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeeccccc--------chhHH-----HHHHHhhhcceeEecCCCCCccCHHHHHH
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWS--------DQSTN-----GKYIMDVWKMGLKVPADEKGIVRREAIAH 416 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~--------DQ~~n-----a~~l~~~~g~G~~l~~~~~~~~~~~~l~~ 416 (468)
.+|+ +|+.+|.+++ ||+++|+|+|+.|-.. .|..| +..+.+. +++..+... ..++++|.+
T Consensus 261 ~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~---~~~~~~l~~ 333 (380)
T PRK00025 261 AADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQE---EATPEKLAR 333 (380)
T ss_pred hCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCC---CCCHHHHHH
Confidence 9999 9999998887 9999999999985332 22222 2333334 434444433 679999999
Q ss_pred HHHHHhcCc
Q 012194 417 CISEILEGE 425 (468)
Q Consensus 417 ~i~~ll~~~ 425 (468)
++.++++|+
T Consensus 334 ~i~~ll~~~ 342 (380)
T PRK00025 334 ALLPLLADG 342 (380)
T ss_pred HHHHHhcCH
Confidence 999999996
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.63 E-value=2.6e-17 Score=141.14 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=99.9
Q ss_pred eEEEEecCcCCCC-HHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc-hHHHhcccCcceee
Q 012194 282 VVYVSFGSYAPLK-VEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP-QLEVLAHEAAGCFL 357 (468)
Q Consensus 282 ~I~is~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q~~lL~~~~~~~~I 357 (468)
+|+|+.||..... ...+..+...+.. ...++++++|..........+ +....|+.+.+|++ ..++++.+|+ +|
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~aDl--vI 77 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKV-ENFNPNVKVFGFVDNMAELMAAADL--VI 77 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCH-CCTTCCCEEECSSSSHHHHHHHHSE--EE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHH-hccCCcEEEEechhhHHHHHHHcCE--EE
Confidence 5899999876310 1112222332322 246888888776433322222 12237899999999 6799999999 99
Q ss_pred ecCCcchHHHHHHcCCceeeccccc----chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 358 THCGWNSTMEALSLGVPMVAMPQWS----DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 358 ~HgG~~s~~Eal~~GvP~l~~P~~~----DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
||||.||+.|++++|+|+|++|... +|..||..+++. |+|..+... ..+.+.|.++|.+++.++
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~---~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES---ELNPEELAEAIEELLSDP 145 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC---C-SCCCHHHHHHCHCCCH
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc---cCCHHHHHHHHHHHHcCc
Confidence 9999999999999999999999988 999999999999 999999877 778999999999999985
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.6e-13 Score=134.29 Aligned_cols=134 Identities=16% Similarity=0.306 Sum_probs=99.1
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHhcccC
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVLAHEA 352 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~ 352 (468)
+++++|+++.|+... ...+..+++++.+ .+.+++++++.+.. +-+.+.+. ..+++.+.+|+.+. ++++.+|
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD 275 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--LKRSLTAKFKSNENVLILGYTKHMNEWMASSQ 275 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--HHHHHHHHhccCCCeEEEeccchHHHHHHhhh
Confidence 345688888898763 1234445555432 24577666654421 11112111 23578899999765 8999999
Q ss_pred cceeeecCCcchHHHHHHcCCceeec-ccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 353 AGCFLTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 353 ~~~~I~HgG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+ +|+.+|..|+.||+++|+|+|+. |..++|..|+..+++. |+|+... +.+++.++|.++++|+
T Consensus 276 l--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 276 L--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNGN 339 (391)
T ss_pred E--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcCH
Confidence 9 99999889999999999999998 7777778999999999 9997754 7889999999999885
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.50 E-value=9.2e-12 Score=121.66 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCceEEEEecCcCCCCHH-HHHHHHHHHH-----hCCCeEEEEEeCCccCCCCcchhhh-ccCCeEEEeecchH-HHhc
Q 012194 278 AKGSVVYVSFGSYAPLKVE-EMEELAWGLK-----ATNQYFLWVVRESEQAKLPENFSDE-TSQKGLVVNWCPQL-EVLA 349 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~-~~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~-~lL~ 349 (468)
+++++|++..|+....... .++.+...+. ..+.++++++|.+.. +-+.+.+. ...++.+.+|+++. ++|+
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--~~~~L~~~~~~~~v~~~G~~~~~~~l~~ 281 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--LQSKLESRDWKIPVKVRGFVTNMEEWMG 281 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--HHHHHHhhcccCCeEEEeccccHHHHHH
Confidence 4556777776665532322 2222222220 133566667765421 11111111 13568889999976 9999
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeecccccchh-HHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQS-TNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~-~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... . ++++|.++|.++++|
T Consensus 282 aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--~-----~~~~la~~i~~ll~~ 347 (382)
T PLN02605 282 ACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--E-----SPKEIARIVAEWFGD 347 (382)
T ss_pred hCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--C-----CHHHHHHHHHHHHcC
Confidence 9999 999999999999999999999988766665 799999999 999765 3 889999999999987
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.46 E-value=3.1e-11 Score=117.55 Aligned_cols=324 Identities=17% Similarity=0.056 Sum_probs=171.6
Q ss_pred CccCHHHHHHHHHHHHh--CCCeEE---EEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHH-
Q 012194 23 AQGHINPLLQFAKRLDH--KGLKVT---LVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQ- 96 (468)
Q Consensus 23 ~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (468)
++|-=.--++|+++|.+ .|++|. |++.....+.-. -...| .+..+| .+++.. ......+.....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~----ip~~g-~~~~~~----sgg~~~-~~~~~~~~~~~~g 75 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLG----IPIIG-PTKELP----SGGFSY-QSLRGLLRDLRAG 75 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCC----CceeC-CCCCCC----CCCccC-CCHHHHHHHHHhh
Confidence 45556677899999998 699999 999876543111 00113 444444 222222 222233333222
Q ss_pred hch--HHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCccccCC
Q 012194 97 IGP--RSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLLLPG 174 (468)
Q Consensus 97 ~~~--~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~ 174 (468)
... -....++.++. .++|+||.-.-+. ...+|..+|+|++++.+.-.-. .+.+ .++
T Consensus 76 l~~~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~~------------~~~ 133 (396)
T TIGR03492 76 LVGLTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWES------------GPR 133 (396)
T ss_pred HHHHHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eecC------------CCC
Confidence 111 12233344442 2359999876665 8888999999999865422000 0000 011
Q ss_pred CCCCCCCCCCcccccCCC--chhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhc-cCCceeecccCCCcccccc
Q 012194 175 MPPLEPQDMPSFVYDLGS--YPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGK-LWSLKTIGPTVPSLYLDKQ 251 (468)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~-~~p~~~vgp~~~~~~~~~~ 251 (468)
.+ ..+++.++.. +..+ + .++ . ....++.+. .+++. ..+.+.+ ..++.++|-.+.+...
T Consensus 134 ~~------~~~~~~~~~G~~~~p~-e-~n~-l--~~~~a~~v~-~~~~~----t~~~l~~~g~k~~~vGnPv~d~l~--- 194 (396)
T TIGR03492 134 RS------PSDEYHRLEGSLYLPW-E-RWL-M--RSRRCLAVF-VRDRL----TARDLRRQGVRASYLGNPMMDGLE--- 194 (396)
T ss_pred Cc------cchhhhccCCCccCHH-H-HHH-h--hchhhCEEe-CCCHH----HHHHHHHCCCeEEEeCcCHHhcCc---
Confidence 10 1111111111 0111 1 011 1 111222333 33221 2222332 2358889965444210
Q ss_pred cCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhC----CCeEEEEEeCC-ccCCCCc
Q 012194 252 LEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKAT----NQYFLWVVRES-EQAKLPE 326 (468)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~-~~~~~~~ 326 (468)
.. ... -+. +.+++|.+-.||-...-...+..+++++..+ +..+++.+.+. ..+.+..
T Consensus 195 ------------~~-~~~---~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~ 256 (396)
T TIGR03492 195 ------------PP-ERK---PLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQA 256 (396)
T ss_pred ------------cc-ccc---ccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHH
Confidence 00 000 111 2345888888887532222233445554433 56788777332 1111111
Q ss_pred chhh-hc--------------cCCeEEEeecch-HHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHH
Q 012194 327 NFSD-ET--------------SQKGLVVNWCPQ-LEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKY 390 (468)
Q Consensus 327 ~~~~-~~--------------~~nv~~~~~vpq-~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 390 (468)
.+.+ .. .+++.+..+..+ .++++.+++ +|+-+|..| .|++.+|+|+|++|....|. ||..
T Consensus 257 ~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~ 332 (396)
T TIGR03492 257 ILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGF 332 (396)
T ss_pred HHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHH
Confidence 0100 00 123556566544 489999999 999999766 99999999999999877786 9877
Q ss_pred HHh----hhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 391 IMD----VWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 391 l~~----~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+++ . |.++.+. +.+.+.|.+++.++++|+
T Consensus 333 ~~~~~~l~-g~~~~l~-----~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 333 AEAQSRLL-GGSVFLA-----SKNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHhhHhhc-CCEEecC-----CCCHHHHHHHHHHHHcCH
Confidence 766 3 5566665 336699999999999986
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.44 E-value=1.7e-14 Score=119.81 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=80.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFW 95 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (468)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.+++. |+.|.+++.. .. ...............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~------Gl~~~~~~~~-~~--~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA------GLEFVPIPGD-SR--LPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT------T-EEEESSSC-GG--GGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc------CceEEEecCC-cC--cCcccchhhhhhhHH
Confidence 78999999999999999999999999999999999999999865 9999999864 01 111000111111111
Q ss_pred Hh--chHHHHHHHHHhc-------CCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccc
Q 012194 96 QI--GPRSLCELVEKMN-------GSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 96 ~~--~~~~~~~~l~~l~-------~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
.. ....+.+.+.+.. ......|+++.+.....+..+|+++|||++.....|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 11 1111222222211 011134888888877889999999999999987766
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=5.7e-10 Score=108.10 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=89.5
Q ss_pred CceEEEEecCcCC-CCHHHHHHHHHHHHhC-CCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH---HHhcccCcc
Q 012194 280 GSVVYVSFGSYAP-LKVEEMEELAWGLKAT-NQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAAG 354 (468)
Q Consensus 280 ~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~ 354 (468)
++.+++..|+... -..+.+..++..+... +.++++...+.....+ . ...+||.+.+|+++. .++..+++
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~----~-~~~~~v~~~g~~~~~~~~~~~~~~d~- 269 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARL----E-ARYPNVHFLGFLDGEELAAAYASADV- 269 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHH----h-ccCCcEEEEeccCHHHHHHHHHhCCE-
Confidence 3467778887653 2334444444444332 4455555433221111 1 245789999999976 58999999
Q ss_pred eeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 355 CFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 355 ~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+|+.+. .+++.||+++|+|+|+.+.. .+...++.. +.|...... +.+++.+++.++++|+
T Consensus 270 -~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~-----~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 270 -FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEPG-----DAEAFAAALAALLADP 333 (364)
T ss_pred -EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCCC-----CHHHHHHHHHHHHcCH
Confidence 887754 47899999999999988754 466677777 889888754 8888999999999986
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.38 E-value=6.3e-10 Score=111.77 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=92.3
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhC-CCeEEEEEeCCccCCCCcchhhh-ccCCeEEEeecchH---HHhcccCcce
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKAT-NQYFLWVVRESEQAKLPENFSDE-TSQKGLVVNWCPQL---EVLAHEAAGC 355 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~---~lL~~~~~~~ 355 (468)
..+++..|+... ......++++++.. +.+++++..+... +.+.+. ...||.+.+++|+. .+|+.+|+
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv-- 334 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPYR----EELEKMFAGTPTVFTGMLQGDELSQAYASGDV-- 334 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChHH----HHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--
Confidence 356667787753 33455677777765 4566655433211 112111 12578889999854 68999999
Q ss_pred eeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHh---hhcceeEecCCCCCccCHHHHHHHHHHHhcCcc-H
Q 012194 356 FLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMD---VWKMGLKVPADEKGIVRREAIAHCISEILEGER-G 427 (468)
Q Consensus 356 ~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~---~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~ 427 (468)
+|.-.. ..++.||+++|+|+|+.... .....++. - +.|...+.. +.+++.++|.++++|+. .
T Consensus 335 ~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~-----d~~~la~~i~~ll~~~~~~ 404 (465)
T PLN02871 335 FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG-----DVDDCVEKLETLLADPELR 404 (465)
T ss_pred EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC-----CHHHHHHHHHHHHhCHHHH
Confidence 885433 34788999999999987643 33445555 6 788888865 88999999999999862 2
Q ss_pred HHHHHHHHHHH
Q 012194 428 KEIRQNAGKWS 438 (468)
Q Consensus 428 ~~~~~~a~~~~ 438 (468)
+++.+++++..
T Consensus 405 ~~~~~~a~~~~ 415 (465)
T PLN02871 405 ERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHHH
Confidence 34555555533
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.36 E-value=4.2e-09 Score=103.71 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=86.9
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCc------chhh--hccCCeEEEeecchH---
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPE------NFSD--ETSQKGLVVNWCPQL--- 345 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~------~~~~--~~~~nv~~~~~vpq~--- 345 (468)
+..+++..|+.... ..+.+-..+..+.+ .+.+++++.+..... ... .+.+ ...+|+.+.+|+|+.
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDI-LAMDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcc-hhhhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 34677788887632 23333333333332 245666555433211 111 0111 134789999999976
Q ss_pred HHhcccCcceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 346 EVLAHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 346 ~lL~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
.++..+++ +++. |-..++.||+++|+|+|+.... .....+++. +.|...+.. +.+++.++|.++
T Consensus 298 ~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~~-----~~~~l~~~i~~l 365 (398)
T cd03800 298 ALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDPR-----DPEALAAALRRL 365 (398)
T ss_pred HHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCCC-----CHHHHHHHHHHH
Confidence 46899999 8854 2246899999999999987643 456667777 889888754 799999999999
Q ss_pred hcCc
Q 012194 422 LEGE 425 (468)
Q Consensus 422 l~~~ 425 (468)
++|+
T Consensus 366 ~~~~ 369 (398)
T cd03800 366 LTDP 369 (398)
T ss_pred HhCH
Confidence 9985
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.34 E-value=3.8e-09 Score=104.60 Aligned_cols=167 Identities=12% Similarity=0.131 Sum_probs=95.5
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhC----CCeEEEEEeCCccCCCCcchhhh-ccCCeEEEeecchH---HHhcccC
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKAT----NQYFLWVVRESEQAKLPENFSDE-TSQKGLVVNWCPQL---EVLAHEA 352 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~---~lL~~~~ 352 (468)
+.+++..|+... ...+..++++++.+ +.+++++..+...+.+- ...+. -.+||.+.+|+|+. .+++.+|
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~-~~~~~~~l~~v~f~G~~~~~~~~~~~~~aD 305 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVICGQGGGKARLE-KMAQCRGLPNVHFLPLQPYDRLPALLKMAD 305 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHH-HHHHHcCCCceEEeCCCCHHHHHHHHHhcC
Confidence 456667788763 23344455555433 34555433222111110 11111 12579999999865 6799999
Q ss_pred cceeeecCCc------chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc
Q 012194 353 AGCFLTHCGW------NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER 426 (468)
Q Consensus 353 ~~~~I~HgG~------~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 426 (468)
+-++.+..+. +.+.|++.+|+|+|+....+.. ....++ +.|...+.. +.+++.++|.++++|+.
T Consensus 306 i~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~-----d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 306 CHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE-----SVEALVAAIAALARQAL 375 (412)
T ss_pred EeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC-----CHHHHHHHHHHHHhCHH
Confidence 9444444332 2368999999999998754321 122232 457777755 89999999999998853
Q ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 427 -GKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 427 -~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
.+++++++++..+.-.+. ....+...++++++.+
T Consensus 376 ~~~~~~~~a~~~~~~~fs~----~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDK----ENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHhc
Confidence 245666666644332211 2334455555555544
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.34 E-value=1.8e-09 Score=105.36 Aligned_cols=135 Identities=23% Similarity=0.227 Sum_probs=85.5
Q ss_pred CCceEEEEecCcCC-CCHHHHHHHHHHHHhC-CCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH---HHhcccCc
Q 012194 279 KGSVVYVSFGSYAP-LKVEEMEELAWGLKAT-NQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAA 353 (468)
Q Consensus 279 ~~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~ 353 (468)
.++.+++..|+... -..+.+...+..+.+. +.++++...+.....+.........+|+.+.+++++. .++..+++
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 34577778888763 2344444444555444 5565544322211111110011234789999999865 67899999
Q ss_pred ceeeecCC---------cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 354 GCFLTHCG---------WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 354 ~~~I~HgG---------~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
+|.... -+++.||+++|+|+|+.+....+. .+... +.|..++.. +.+++.+++.++++|
T Consensus 298 --~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~~-----~~~~l~~~i~~~~~~ 365 (394)
T cd03794 298 --GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPPG-----DPEALAAAILELLDD 365 (394)
T ss_pred --eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCCC-----CHHHHHHHHHHHHhC
Confidence 775332 234799999999999988665433 44444 667777754 899999999999988
Q ss_pred c
Q 012194 425 E 425 (468)
Q Consensus 425 ~ 425 (468)
+
T Consensus 366 ~ 366 (394)
T cd03794 366 P 366 (394)
T ss_pred h
Confidence 6
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=1.4e-09 Score=106.08 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=90.7
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHH-hCCCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHhcccCcc
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLK-ATNQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVLAHEAAG 354 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~~~ 354 (468)
+..+++.+|..... ..+.+-..+..+. +.+.++++...+.....+. ...++ ..+++.+.++.++. .+|..+++
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~- 273 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAE-RLARELGLQDDVLFLGKQDHVEELLSIADL- 273 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHH-HHHHHcCCCceEEEecCcccHHHHHHhcCE-
Confidence 34677778877632 2333323233332 2355666554332111111 11111 34678888888764 89999999
Q ss_pred eeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccH-HH
Q 012194 355 CFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERG-KE 429 (468)
Q Consensus 355 ~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~-~~ 429 (468)
+|.- |...++.||+++|+|+|+... ...+..+++- ..|...+.. +.+++.+++..+++|+.. ++
T Consensus 274 -~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~~-----~~~~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 274 -FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDVG-----DVEAMAEYALSLLEDDELWQE 342 (371)
T ss_pred -EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCCC-----CHHHHHHHHHHHHhCHHHHHH
Confidence 7732 345699999999999998643 4566677776 678777754 889999999999988632 34
Q ss_pred HHHHHHHH
Q 012194 430 IRQNAGKW 437 (468)
Q Consensus 430 ~~~~a~~~ 437 (468)
+++++++.
T Consensus 343 ~~~~~~~~ 350 (371)
T cd04962 343 FSRAARNR 350 (371)
T ss_pred HHHHHHHH
Confidence 55555554
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.33 E-value=2.7e-09 Score=103.06 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCceEEEEecCcCCC-CHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH---HHhcccCcc
Q 012194 279 KGSVVYVSFGSYAPL-KVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAAG 354 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~ 354 (468)
.++.+++..|+.... ..+.+..++..+...+.++++.......... .......+++.+.+++++. .++..+++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~--~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~- 265 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEE--SYELEGDPRVEFLGAYPQEEIDDFYAEIDV- 265 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHH--HHhhcCCCeEEEeCCCCHHHHHHHHHhCCE-
Confidence 344677778887632 2333333333333335666655433211111 0000235789999999765 67999999
Q ss_pred eeeec----CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 355 CFLTH----CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 355 ~~I~H----gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+|+. .| ..++.||+++|+|+|+.+. ......+... +.|...... +.+++.+++.++++|+
T Consensus 266 -~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~-----d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 266 -LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPG-----DAEDLAAALERLIDDP 330 (359)
T ss_pred -EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCC-----CHHHHHHHHHHHHhCh
Confidence 7742 33 3479999999999998664 4566677776 788888855 7999999999999986
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.31 E-value=4.6e-09 Score=103.40 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=67.9
Q ss_pred cCCeEEEeecchH---HHhcccCcceeee---cCCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCC
Q 012194 333 SQKGLVVNWCPQL---EVLAHEAAGCFLT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADE 405 (468)
Q Consensus 333 ~~nv~~~~~vpq~---~lL~~~~~~~~I~---HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~ 405 (468)
.++|.+.+++|+. .+|..+++ +|. +.|. .++.||+++|+|+|+.. .......+..- ..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~~- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDFF- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCCC-
Confidence 3689999999976 57889999 663 2333 48999999999999864 34566666666 678887754
Q ss_pred CCccCHHHHHHHHHHHhcCcc-HHHHHHHHHH
Q 012194 406 KGIVRREAIAHCISEILEGER-GKEIRQNAGK 436 (468)
Q Consensus 406 ~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 436 (468)
+++++.++|.++++|++ .+++.+++++
T Consensus 352 ----d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 352 ----DPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred ----CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 89999999999999862 1344444444
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.31 E-value=9.1e-09 Score=99.08 Aligned_cols=316 Identities=17% Similarity=0.113 Sum_probs=168.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccc-cccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKS-LHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEK 93 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~ 93 (468)
||++++....|+......++++|.++||+|++++....... .. ..++.+..++..... .........
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~~ 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE------ALGVKVIPIPLDRRG------INPFKDLKA 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc------cCCceEEeccccccc------cChHhHHHH
Confidence 58888887788999999999999999999999998765542 22 337777777632211 011111111
Q ss_pred HHHhchHHHHHHHHHhcCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCccc
Q 012194 94 FWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLL 171 (468)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~--~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (468)
+. .+...+++ . .+|+|++..... .+..++...+.|.++.........
T Consensus 69 ~~-----~~~~~~~~---~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------- 117 (359)
T cd03808 69 LL-----RLYRLLRK---E--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV--------------------- 117 (359)
T ss_pred HH-----HHHHHHHh---c--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh---------------------
Confidence 11 12233333 2 359999875442 234445546666665432220000
Q ss_pred cCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhcc-CCceeecccCCCccccc
Q 012194 172 LPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKL-WSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~-~p~~~vgp~~~~~~~~~ 250 (468)
.. ... ..........+ ......+.+++.+....+. ........ .....+.|...+
T Consensus 118 ------~~----~~~-----~~~~~~~~~~~---~~~~~~d~ii~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~----- 173 (359)
T cd03808 118 ------FT----SGG-----LKRRLYLLLER---LALRFTDKVIFQNEDDRDL-ALKLGIIKKKKTVLIPGSGVD----- 173 (359)
T ss_pred ------hc----cch-----hHHHHHHHHHH---HHHhhccEEEEcCHHHHHH-HHHhcCCCcCceEEecCCCCC-----
Confidence 00 000 01111122222 1223456777776544332 11111100 011111111111
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcc
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPEN 327 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~ 327 (468)
... ..+.... ...++.+++..|+.... ..+.+...+..+.+ .+.++++.............
T Consensus 174 ---~~~------~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~ 237 (359)
T cd03808 174 ---LDR------FSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL 237 (359)
T ss_pred ---hhh------cCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH
Confidence 000 0000000 12345788888887632 34444444444443 34455544433321111100
Q ss_pred -hh-hhccCCeEEEeecchH-HHhcccCcceeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE
Q 012194 328 -FS-DETSQKGLVVNWCPQL-EVLAHEAAGCFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK 400 (468)
Q Consensus 328 -~~-~~~~~nv~~~~~vpq~-~lL~~~~~~~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~ 400 (468)
.. ....++|.+.++..+. .++..+++ +|.-+. .+++.||+++|+|+|+.+.. .....+++. +.|..
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~ 310 (359)
T cd03808 238 EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFL 310 (359)
T ss_pred HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEE
Confidence 00 1134678888876654 89999999 886543 57899999999999986543 345566667 77888
Q ss_pred ecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 401 VPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 401 l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
.+.. +.+++.+++.+++.|+
T Consensus 311 ~~~~-----~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 311 VPPG-----DAEALADAIERLIEDP 330 (359)
T ss_pred ECCC-----CHHHHHHHHHHHHhCH
Confidence 8754 8999999999999886
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.28 E-value=8.9e-09 Score=101.78 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCeEEE-eecchH---HHhcccCcceeee-c------CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEec
Q 012194 334 QKGLVV-NWCPQL---EVLAHEAAGCFLT-H------CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 334 ~nv~~~-~~vpq~---~lL~~~~~~~~I~-H------gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
+|+.+. +|+|.. .+|..+|+ +|. + |--+++.||+++|+|+|+... ......+++. +.|....
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC
Confidence 466655 688854 67899999 773 1 123479999999999998653 3566777777 8898763
Q ss_pred CCCCCccCHHHHHHHHHHHhcC---cc-HHHHHHHHHHHH
Q 012194 403 ADEKGIVRREAIAHCISEILEG---ER-GKEIRQNAGKWS 438 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~~~ 438 (468)
+.+++.++|.++++| ++ .++|.+++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 689999999999998 42 345555555544
No 55
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.25 E-value=2.4e-08 Score=98.74 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=69.1
Q ss_pred cCCeEEEeecchH---HHhcccCcceeee---cCC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCC
Q 012194 333 SQKGLVVNWCPQL---EVLAHEAAGCFLT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADE 405 (468)
Q Consensus 333 ~~nv~~~~~vpq~---~lL~~~~~~~~I~---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~ 405 (468)
.++|.+.+++|+. ++|+.+++ +|. +.| ..++.||+++|+|+|+.... .....+++. +.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCCC-
Confidence 4789999999864 78999999 774 233 45899999999999986643 344566666 778877754
Q ss_pred CCccCHHHHHHHHHHHhcCcc-HHHHHHHHHHH
Q 012194 406 KGIVRREAIAHCISEILEGER-GKEIRQNAGKW 437 (468)
Q Consensus 406 ~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~ 437 (468)
+.+++.++|.++++|+. .+++++++++.
T Consensus 354 ----d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 354 ----DPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred ----CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 89999999999999852 23455555543
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=1e-08 Score=99.51 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=92.8
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecchH---HHhccc
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQL---EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~---~lL~~~ 351 (468)
++.+++..|+.... ..+.+..++..+.. .+.++++...+.....+. ...+ ...+|+.+.+++|+. .++..+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELE-ELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHH-HHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 34667777877632 34444444444443 345555554332111110 1111 235789999999975 678899
Q ss_pred Ccceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc-
Q 012194 352 AAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER- 426 (468)
Q Consensus 352 ~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~- 426 (468)
++ +|.. |...++.||+++|+|+|+.. ....+..++.. +.|..++.. +. ++.+++.+++++++
T Consensus 280 d~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~-----~~-~~~~~i~~l~~~~~~ 346 (374)
T cd03817 280 DL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPG-----DE-ALAEALLRLLQDPEL 346 (374)
T ss_pred CE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCC-----CH-HHHHHHHHHHhChHH
Confidence 99 7744 33478999999999999865 34566777777 788888754 33 89999999999862
Q ss_pred HHHHHHHHHHHHHH
Q 012194 427 GKEIRQNAGKWSNF 440 (468)
Q Consensus 427 ~~~~~~~a~~~~~~ 440 (468)
.+++.+++++..+.
T Consensus 347 ~~~~~~~~~~~~~~ 360 (374)
T cd03817 347 RRRLSKNAEESAEK 360 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 13355555554443
No 57
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=4e-09 Score=92.86 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=106.9
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecch-HHHhcccCcceee
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQ-LEVLAHEAAGCFL 357 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq-~~lL~~~~~~~~I 357 (468)
.-|+|++|..- +.....+++..+.+.+..+-++++... +-.++..++ .-+|+.+...... ..|+..|++ .|
T Consensus 159 r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~--p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI 232 (318)
T COG3980 159 RDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN--PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AI 232 (318)
T ss_pred heEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC--cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--he
Confidence 35999998752 233566788888887766666666332 122233222 2367777766664 489999999 99
Q ss_pred ecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHH
Q 012194 358 THCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKW 437 (468)
Q Consensus 358 ~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~ 437 (468)
+-|| .|+.|++..|+|.+++|+...|.-.|...+.+ |+-..+.. .+........+..+..|. ..|++....
T Consensus 233 ~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~----~l~~~~~~~~~~~i~~d~---~~rk~l~~~ 303 (318)
T COG3980 233 SAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY----HLKDLAKDYEILQIQKDY---ARRKNLSFG 303 (318)
T ss_pred eccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC----CCchHHHHHHHHHhhhCH---HHhhhhhhc
Confidence 9877 58999999999999999999999999999999 87766654 367778888888888886 667666554
Q ss_pred HHHH
Q 012194 438 SNFA 441 (468)
Q Consensus 438 ~~~~ 441 (468)
++.+
T Consensus 304 ~~~i 307 (318)
T COG3980 304 SKLI 307 (318)
T ss_pred ccee
Confidence 4443
No 58
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.20 E-value=1.8e-08 Score=99.04 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=88.9
Q ss_pred CCceEEEEecCcCC-CCHHHHHHHHHHHHhC-----CCeEEEEEeCCccCCCC----cch---hh---hccCCeEEEeec
Q 012194 279 KGSVVYVSFGSYAP-LKVEEMEELAWGLKAT-----NQYFLWVVRESEQAKLP----ENF---SD---ETSQKGLVVNWC 342 (468)
Q Consensus 279 ~~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~----~~~---~~---~~~~nv~~~~~v 342 (468)
++..+++..|+... -..+.+-.++..+.+. +.+++++.++.....-. +.+ .+ .+.+||.+.+++
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 34477788888763 2344444444444322 45665544332110000 111 11 235789999999
Q ss_pred chH---HHhcccCcceeeecC---C-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHH
Q 012194 343 PQL---EVLAHEAAGCFLTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIA 415 (468)
Q Consensus 343 pq~---~lL~~~~~~~~I~Hg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~ 415 (468)
|+. .+|..+++ ++... | ..++.||+++|+|+|+.-.. .....+... +.|...+ . +.+++.
T Consensus 289 ~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~-----~-~~~~~a 355 (392)
T cd03805 289 SDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE-----P-TPEEFA 355 (392)
T ss_pred ChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC-----C-CHHHHH
Confidence 976 67899999 77432 2 35789999999999987543 344556665 6676664 3 789999
Q ss_pred HHHHHHhcCcc-HHHHHHHHHH
Q 012194 416 HCISEILEGER-GKEIRQNAGK 436 (468)
Q Consensus 416 ~~i~~ll~~~~-~~~~~~~a~~ 436 (468)
++|.++++|++ .+++.+++++
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHH
Confidence 99999999862 2345555444
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.20 E-value=2.3e-08 Score=96.51 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=67.0
Q ss_pred ccCCeEEEeecchH---HHhcccCcceeee----cCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCC
Q 012194 332 TSQKGLVVNWCPQL---EVLAHEAAGCFLT----HCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPAD 404 (468)
Q Consensus 332 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~ 404 (468)
.++++.+.+++++. .+|..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+++. +.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC
Confidence 56889999999744 78999999 774 3557799999999999998765 4566677767 888888754
Q ss_pred CCCccCHHHHHHHHHHHhcCc
Q 012194 405 EKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 405 ~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+++++.+++.++++|+
T Consensus 327 -----~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 327 -----DPEALAEAILRLLDDP 342 (374)
T ss_pred -----CHHHHHHHHHHHHcCh
Confidence 7999999999999986
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=2.5e-08 Score=96.55 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHHHhCC-CeEEEEEeCCccCCCCcch-hhhccCCeEEEeecchH---HHhcccCcc
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGLKATN-QYFLWVVRESEQAKLPENF-SDETSQKGLVVNWCPQL---EVLAHEAAG 354 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~nv~~~~~vpq~---~lL~~~~~~ 354 (468)
+..+++..|+... ......+++++++.. .++++...+.....+..-. .....+||.+.+|+|+. .+++.|++
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~- 266 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDV- 266 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCE-
Confidence 3467778888753 234555667776665 5555544332111111000 01245799999999974 68888999
Q ss_pred eee--e---cCCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc-H
Q 012194 355 CFL--T---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER-G 427 (468)
Q Consensus 355 ~~I--~---HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~ 427 (468)
+| + +.|. .++.||+++|+|+|+............ .. +.|...+.. +.+++.++|.++++|++ .
T Consensus 267 -~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~~-----d~~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 267 -FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPPG-----DPAALAEAIRRLLEDPELR 336 (357)
T ss_pred -EEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCCC-----CHHHHHHHHHHHHHCHHHH
Confidence 65 3 2343 479999999999999765544433222 25 678877754 89999999999999963 2
Q ss_pred HHHHHHHHHH
Q 012194 428 KEIRQNAGKW 437 (468)
Q Consensus 428 ~~~~~~a~~~ 437 (468)
+++++++++.
T Consensus 337 ~~~~~~~~~~ 346 (357)
T cd03795 337 ERLGEAARER 346 (357)
T ss_pred HHHHHHHHHH
Confidence 3445554443
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.16 E-value=3.9e-08 Score=94.18 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=86.2
Q ss_pred ceEEEEecCcCCC-CHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecch-HHHhcccCcc
Q 012194 281 SVVYVSFGSYAPL-KVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQ-LEVLAHEAAG 354 (468)
Q Consensus 281 ~~I~is~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq-~~lL~~~~~~ 354 (468)
..+++..|+.... ..+.+..++..+.+. +.++++...+.....+. ...+ ...+++.+.++... ..++..+++
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~- 255 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALE-ALIKELGLEDRVILLGFTKNIEEYYAKASI- 255 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHH-HHHHHcCCCCeEEEcCCcchHHHHHHhCCE-
Confidence 3566777776542 234444444444322 34555443222111110 1111 13467778777554 389999999
Q ss_pred eeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhc-ceeEecCCCCCccCHHHHHHHHHHHhcCccH-H
Q 012194 355 CFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWK-MGLKVPADEKGIVRREAIAHCISEILEGERG-K 428 (468)
Q Consensus 355 ~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g-~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~-~ 428 (468)
+|.-.. .+++.||+++|+|+|+.+....+ ..+... | .|...+.. +.+++.+++.++++|++. +
T Consensus 256 -~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~~-----~~~~~~~~i~~ll~~~~~~~ 324 (348)
T cd03820 256 -FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPNG-----DVEALAEALLRLMEDEELRK 324 (348)
T ss_pred -EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCCC-----CHHHHHHHHHHHHcCHHHHH
Confidence 876642 56899999999999987654433 234444 4 78888744 789999999999999632 3
Q ss_pred HHHHHHHHH
Q 012194 429 EIRQNAGKW 437 (468)
Q Consensus 429 ~~~~~a~~~ 437 (468)
+++++++++
T Consensus 325 ~~~~~~~~~ 333 (348)
T cd03820 325 RMGANARES 333 (348)
T ss_pred HHHHHHHHH
Confidence 344444433
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.09 E-value=1.9e-07 Score=92.91 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=64.2
Q ss_pred CeEEEeecchH-HHhcccCcceeeec-----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCc
Q 012194 335 KGLVVNWCPQL-EVLAHEAAGCFLTH-----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGI 408 (468)
Q Consensus 335 nv~~~~~vpq~-~lL~~~~~~~~I~H-----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~ 408 (468)
++.+.+...+. .+++.+|+ ++.. ||..++.||+++|+|+|+-|...++......+.+. |++....
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~------ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE------ 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC------
Confidence 45566655544 88999998 6542 34456999999999999999988888888888788 7666533
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012194 409 VRREAIAHCISEILEGE 425 (468)
Q Consensus 409 ~~~~~l~~~i~~ll~~~ 425 (468)
++++|.+++.++++|+
T Consensus 374 -d~~~La~~l~~ll~~~ 389 (425)
T PRK05749 374 -DAEDLAKAVTYLLTDP 389 (425)
T ss_pred -CHHHHHHHHHHHhcCH
Confidence 7899999999999986
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.08 E-value=6.3e-07 Score=87.00 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=62.6
Q ss_pred ccCCeEEEeecc-hH---HHhcccCcceeeecC----CcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecC
Q 012194 332 TSQKGLVVNWCP-QL---EVLAHEAAGCFLTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPA 403 (468)
Q Consensus 332 ~~~nv~~~~~vp-q~---~lL~~~~~~~~I~Hg----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~ 403 (468)
...++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+... +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC
Confidence 456788889998 43 67999999 88753 357999999999999986542 333445555 57777774
Q ss_pred CCCCccCHHHHHHHHHHHhcCc
Q 012194 404 DEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 404 ~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
. +.+++.+++.++++|+
T Consensus 315 ~-----~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 G-----DPEDLAEGIEWLLADP 331 (365)
T ss_pred C-----CHHHHHHHHHHHHhCH
Confidence 3 8899999999999986
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.06 E-value=5.1e-07 Score=95.50 Aligned_cols=380 Identities=14% Similarity=0.121 Sum_probs=191.8
Q ss_pred cCCCcEEEEEcCCCc---------------cCHHHHHHHHHHHHhCC--CeEEEEeCCcccccc--------ccC-----
Q 012194 10 SCRLVHCLVLSYPAQ---------------GHINPLLQFAKRLDHKG--LKVTLVTTYFISKSL--------HRD----- 59 (468)
Q Consensus 10 ~~~~~~il~~~~~~~---------------GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~--------~~~----- 59 (468)
..++|+|++++..+. |+.-=.+.||++|+++| |+|.++|-......+ +..
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 356789998775432 34445689999999998 899999965432211 000
Q ss_pred -----CCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHH----HHHHhcC-CCCCccEEEeCCCc--ch
Q 012194 60 -----SSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCE----LVEKMNG-SVVPVDCIVYDSFL--PW 127 (468)
Q Consensus 60 -----~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~-~~~p~DlVI~D~~~--~~ 127 (468)
.....+|+..+.+|.+... ..-....+..++..|...+...+.. +.+++.. ....||+|-+.+.. ..
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~-~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRD-KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDS 324 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHH
Confidence 0012348888888865442 1122233455555555544433332 2222211 11236999988644 45
Q ss_pred HHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhc
Q 012194 128 ALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDN 207 (468)
Q Consensus 128 ~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (468)
+..+++.+|||+|....+....- ...+ ...|.. . ...+.. .+. +..+..- -...
T Consensus 325 a~~L~~~lgVP~V~T~HSLgr~K--~~~l--------------l~~g~~--~----~~~~~~--~y~-~~~Ri~~-Ee~~ 378 (1050)
T TIGR02468 325 AALLSGALNVPMVLTGHSLGRDK--LEQL--------------LKQGRM--S----KEEINS--TYK-IMRRIEA-EELS 378 (1050)
T ss_pred HHHHHHhhCCCEEEECccchhhh--hhhh--------------cccccc--c----cccccc--ccc-hHHHHHH-HHHH
Confidence 78899999999887544321000 0000 000000 0 000000 000 1111111 1123
Q ss_pred ccccCeEEecchhhchHHHHHHHhccC-----------------------C--ceeecccCCCcccccccCCcccc----
Q 012194 208 IDKADWVLCNTFYELEEEVAEWLGKLW-----------------------S--LKTIGPTVPSLYLDKQLEDDKDY---- 258 (468)
Q Consensus 208 ~~~~~~~~~~s~~~le~~~~~~~~~~~-----------------------p--~~~vgp~~~~~~~~~~~~~~~~~---- 258 (468)
+..++.++..|..+.+... ..+.... . +++.|--...+. |.+...
T Consensus 379 l~~Ad~VIasT~qE~~eq~-~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~-----P~~~~~~~~~ 452 (1050)
T TIGR02468 379 LDASEIVITSTRQEIEEQW-GLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIV-----PHDGDMDGET 452 (1050)
T ss_pred HHhcCEEEEeCHHHHHHHH-HHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHcc-----CCCccccchh
Confidence 4567778888876655322 1221100 0 222221110000 100000
Q ss_pred ------CCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCC-----CeEEEEEeCCcc-CCCCc
Q 012194 259 ------GFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATN-----QYFLWVVRESEQ-AKLPE 326 (468)
Q Consensus 259 ------~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~-~~~~~ 326 (468)
+.....+....+..|+.. +.+ ++++..|.... ..-+..+++|+..+. ..+.++++.... ..+..
T Consensus 453 ~~~~~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~ 528 (1050)
T TIGR02468 453 EGNEEHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSS 528 (1050)
T ss_pred cccccccccccchhhHHHHhhccc-CCC-cEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhc
Confidence 000000112244556653 333 45666777653 233455566654431 234344543211 11100
Q ss_pred -------c---hhhh--ccCCeEEEeecchH---HHhccc----Ccceeeec---CC-cchHHHHHHcCCceeecccccc
Q 012194 327 -------N---FSDE--TSQKGLVVNWCPQL---EVLAHE----AAGCFLTH---CG-WNSTMEALSLGVPMVAMPQWSD 383 (468)
Q Consensus 327 -------~---~~~~--~~~nv~~~~~vpq~---~lL~~~----~~~~~I~H---gG-~~s~~Eal~~GvP~l~~P~~~D 383 (468)
. ..++ +.++|.+.+++++. .++..+ ++ ||+- =| ..++.||+++|+|+|+....+
T Consensus 529 ~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG- 605 (1050)
T TIGR02468 529 GSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG- 605 (1050)
T ss_pred cchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC-
Confidence 0 1111 35788888998875 567666 36 7764 23 358999999999999986532
Q ss_pred hhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc-HHHHHHHHHHHH
Q 012194 384 QSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER-GKEIRQNAGKWS 438 (468)
Q Consensus 384 Q~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~ 438 (468)
....++.- ..|..+++. ++++|.++|.++++|+. .++|.+++++..
T Consensus 606 ---~~EII~~g-~nGlLVdP~-----D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 606 ---PVDIHRVL-DNGLLVDPH-----DQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred ---cHHHhccC-CcEEEECCC-----CHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 33444444 568888855 89999999999999963 245555555443
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.04 E-value=3.2e-07 Score=88.74 Aligned_cols=133 Identities=21% Similarity=0.203 Sum_probs=85.2
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecchH---HHhccc
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQL---EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~---~lL~~~ 351 (468)
+..+++..|+.... ..+.+-..+..+.+. +.++++...+.....+ ....+ ...+|+.+.+++++. .++..|
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREAL-EALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHH-HHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 44677788887642 233333344444433 3344333221111000 01111 135789999999974 778899
Q ss_pred Ccceeee----cCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 352 AAGCFLT----HCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 352 ~~~~~I~----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
++ +|. -|..+++.||+++|+|+|+-+.. .....++.. +.|...+.. +.+++.+++.++++++
T Consensus 280 d~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~~-----~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPPG-----DPEALAEAILRLLADP 345 (377)
T ss_pred Ce--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECCC-----CHHHHHHHHHHHhcCc
Confidence 99 763 35567899999999999986543 455667777 778888754 8999999999999996
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.02 E-value=1e-06 Score=85.29 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchh---h--hccCCeEEEeecchH---HHh
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFS---D--ETSQKGLVVNWCPQL---EVL 348 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~---~--~~~~nv~~~~~vpq~---~lL 348 (468)
+..+++..|+.... ..+.+-.++..+.+ .+.+++++..+... ...... + ...+++.+.+|+++. .++
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG--YRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc--hHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 44677778887532 23333333333333 24455444322111 111110 1 135789999999954 668
Q ss_pred cccCcceeeecC----CcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 349 AHEAAGCFLTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 349 ~~~~~~~~I~Hg----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
..+++ +|.-. -.+++.||+++|+|+|+.+..+ ....+ .. +.|...+. +.+++.++|.++++|
T Consensus 280 ~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~-~~-~~~~~~~~------~~~~~~~~i~~l~~~ 345 (375)
T cd03821 280 ADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELI-EY-GCGWVVDD------DVDALAAALRRALEL 345 (375)
T ss_pred hhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHh-hc-CceEEeCC------ChHHHHHHHHHHHhC
Confidence 99999 76533 2568999999999999976432 23333 23 56666653 449999999999998
Q ss_pred cc-HHHHHHHHHH
Q 012194 425 ER-GKEIRQNAGK 436 (468)
Q Consensus 425 ~~-~~~~~~~a~~ 436 (468)
++ .+++.+++++
T Consensus 346 ~~~~~~~~~~~~~ 358 (375)
T cd03821 346 PQRLKAMGENGRA 358 (375)
T ss_pred HHHHHHHHHHHHH
Confidence 52 1334444444
No 67
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.99 E-value=1.3e-07 Score=89.65 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=88.4
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHHHhCCCe-EEEEEeCCccCCCCcchhhhcc--CCeEEEeecchHHHhcccCccee
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGLKATNQY-FLWVVRESEQAKLPENFSDETS--QKGLVVNWCPQLEVLAHEAAGCF 356 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vpq~~lL~~~~~~~~ 356 (468)
+++|.+--||-...-...+-.++++...+..+ .++.+..... . +.+.+... ..+.+.+ .-.+++..||+ +
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--a 239 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDISEFEISY--DTHKALLEAEF--A 239 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--H
Confidence 36899999997642223333344444333221 2222222211 0 11111111 1222332 33489999999 9
Q ss_pred eecCCcchHHHHHHcCCceeeccc--ccchhHHHHHHH---hhhcceeEecC---------C-CCCccCHHHHHHHHHHH
Q 012194 357 LTHCGWNSTMEALSLGVPMVAMPQ--WSDQSTNGKYIM---DVWKMGLKVPA---------D-EKGIVRREAIAHCISEI 421 (468)
Q Consensus 357 I~HgG~~s~~Eal~~GvP~l~~P~--~~DQ~~na~~l~---~~~g~G~~l~~---------~-~~~~~~~~~l~~~i~~l 421 (468)
|+-+|..|+ |+..+|+|+|+ +. ..-|+.||+++. .. |+...+.. + -.++.|++.|.+.+.+.
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~ 316 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM 316 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH
Confidence 999999999 99999999987 43 457899999999 66 66544421 1 01278999999999772
Q ss_pred hcCccHHHHHHHHHHHHHHH
Q 012194 422 LEGERGKEIRQNAGKWSNFA 441 (468)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~ 441 (468)
.. +++++...++++.+
T Consensus 317 -~~---~~~~~~~~~l~~~l 332 (347)
T PRK14089 317 -DR---EKFFKKSKELREYL 332 (347)
T ss_pred -HH---HHHHHHHHHHHHHh
Confidence 22 35666666665555
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.99 E-value=2.5e-07 Score=89.48 Aligned_cols=133 Identities=20% Similarity=0.199 Sum_probs=84.9
Q ss_pred CceEEEEecCcCC-CCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH---HHhccc
Q 012194 280 GSVVYVSFGSYAP-LKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL---EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~lL~~~ 351 (468)
++.+++.+|+... -..+.+...+..+... +.+++++..+.....+. .+.+. .++||.+.+++|+. .++..+
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELE-ALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHH-HHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 3466777787653 2344444444444443 44555444332111110 11111 45789999999854 788889
Q ss_pred Ccceeee----------cCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 352 AAGCFLT----------HCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 352 ~~~~~I~----------HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
++ +|. -|..+++.||+++|+|+|+.+... ....++.. ..|...... +.+++.++|.++
T Consensus 257 di--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~~-----~~~~l~~~i~~~ 324 (355)
T cd03799 257 DL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPPG-----DPEALADAIERL 324 (355)
T ss_pred CE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCCC-----CHHHHHHHHHHH
Confidence 99 776 344578999999999999866432 33345555 588888754 899999999999
Q ss_pred hcCc
Q 012194 422 LEGE 425 (468)
Q Consensus 422 l~~~ 425 (468)
++|+
T Consensus 325 ~~~~ 328 (355)
T cd03799 325 LDDP 328 (355)
T ss_pred HhCH
Confidence 9986
No 69
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.99 E-value=3.4e-06 Score=84.19 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=62.8
Q ss_pred ccCCeEEEeecchHH---Hhccc----CcceeeecC---C-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE
Q 012194 332 TSQKGLVVNWCPQLE---VLAHE----AAGCFLTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK 400 (468)
Q Consensus 332 ~~~nv~~~~~vpq~~---lL~~~----~~~~~I~Hg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~ 400 (468)
+.++|.+.+++++.+ +++.+ ++ ||... | ..+++||+++|+|+|+.... .....+... ..|..
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~l 387 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLL 387 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEE
Confidence 457888888888654 47655 67 88653 3 45999999999999987643 355556555 67888
Q ss_pred ecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 401 VPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 401 l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
++.. +++++.++|.++++|+
T Consensus 388 v~~~-----d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 388 VDVL-----DLEAIASALEDALSDS 407 (439)
T ss_pred eCCC-----CHHHHHHHHHHHHhCH
Confidence 8755 8999999999999986
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.99 E-value=1.2e-06 Score=86.41 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=77.6
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH---HHhccc
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL---EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~lL~~~ 351 (468)
+..+++..|..... ..+.+...+..+.+ .+.+++++..+.....+ .+..++ +.++|.+.+|+|+. .+|+.+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l-~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILL-EEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHH-HHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 44677788877532 23333333333332 24455544332211111 111112 35779999999864 788899
Q ss_pred Ccceeeec---CCcc-hHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 352 AAGCFLTH---CGWN-STMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 352 ~~~~~I~H---gG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
++ +|.- -|.| ++.||+++|+|+|+.+..+ ....+. . |-+ .+.. . +.+++.+++.+++++.
T Consensus 271 d~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~-~~~~----~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 271 HI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMI-LLAE----P-DVESIVRKLEEAISIL 334 (398)
T ss_pred CE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cce-eecC----C-CHHHHHHHHHHHHhCh
Confidence 99 7643 2444 9999999999999977643 223333 3 433 2222 2 7899999999999863
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.98 E-value=1e-06 Score=85.25 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCceEEEEecCcCC-CCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcch---hh--hccCCeEEEeecchH-HHhc
Q 012194 279 KGSVVYVSFGSYAP-LKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENF---SD--ETSQKGLVVNWCPQL-EVLA 349 (468)
Q Consensus 279 ~~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~---~~--~~~~nv~~~~~vpq~-~lL~ 349 (468)
++..+++..|.... -..+.+..++..+.+. +.+++++..+.......... .+ ...++|.+.+|.+.. .+|.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 34467777788763 2345555555556553 44555444332211111111 11 235789999986543 8999
Q ss_pred ccCcceeeec----CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc-
Q 012194 350 HEAAGCFLTH----CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE- 423 (468)
Q Consensus 350 ~~~~~~~I~H----gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~- 423 (468)
.+++ +|+= -| .+++.||+++|+|+|+... ......+... +.|..++.. +.+++.++|..++.
T Consensus 263 ~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~-----~~~~l~~~i~~~~~~ 330 (355)
T cd03819 263 LADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPPG-----DAEALAQALDQILSL 330 (355)
T ss_pred hCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCCC-----CHHHHHHHHHHHHhh
Confidence 9999 6642 23 3599999999999988653 3345566666 688888755 89999999975554
Q ss_pred Ccc-HHHHHHHHHHHHH
Q 012194 424 GER-GKEIRQNAGKWSN 439 (468)
Q Consensus 424 ~~~-~~~~~~~a~~~~~ 439 (468)
+++ .++++++|++..+
T Consensus 331 ~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 331 LPEGRAKMFAKARMCVE 347 (355)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 431 2345555555443
No 72
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=6e-08 Score=94.38 Aligned_cols=135 Identities=15% Similarity=0.209 Sum_probs=85.1
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHHHhC-----CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecch---HHHhc
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGLKAT-----NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQ---LEVLA 349 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq---~~lL~ 349 (468)
++.|+++.+-.... ...+..+++++.++ +.++++..+++.. ....+.+. ..+|+.+.+.+++ ..++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 273 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--VREPLHKHLGDSKRVHLIEPLEYLDFLNLAA 273 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--HHHHHHHHhCCCCCEEEECCCChHHHHHHHH
Confidence 34666655432211 13466677776543 4566665443211 11111121 2368888876665 37788
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHH
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKE 429 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 429 (468)
.+++ +|+..|.. +.||+++|+|+|.++-..+++. +... |.+..+. . ++++|.+++.++++|+ +
T Consensus 274 ~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-~-----d~~~i~~ai~~ll~~~---~ 336 (365)
T TIGR00236 274 NSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-T-----DKENITKAAKRLLTDP---D 336 (365)
T ss_pred hCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC-C-----CHHHHHHHHHHHHhCh---H
Confidence 9998 99987754 7999999999999875555442 3346 7776553 2 7899999999999986 5
Q ss_pred HHHHH
Q 012194 430 IRQNA 434 (468)
Q Consensus 430 ~~~~a 434 (468)
.+++.
T Consensus 337 ~~~~~ 341 (365)
T TIGR00236 337 EYKKM 341 (365)
T ss_pred HHHHh
Confidence 55443
No 73
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=8.4e-07 Score=83.47 Aligned_cols=299 Identities=16% Similarity=0.154 Sum_probs=154.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc--ccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI--SKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
|||.+--.. .-|+.-+-.+.++|.++||+|.+.+-+.. .+.+..+ |+.|..+...-. +....+
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y------g~~y~~iG~~g~--------~~~~Kl 65 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY------GIDYIVIGKHGD--------SLYGKL 65 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc------CCCeEEEcCCCC--------CHHHHH
Confidence 677763322 23999999999999999999999886543 2344443 888888863221 222222
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCccc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQLL 171 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (468)
...... ...+++.+.+. + ||++|+- .+..+..+|.-+|+|+|.+.-+..+.. ...+ .
T Consensus 66 ~~~~~R----~~~l~~~~~~~-~-pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~-------~~~L---------t 122 (335)
T PF04007_consen 66 LESIER----QYKLLKLIKKF-K-PDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA-------QNRL---------T 122 (335)
T ss_pred HHHHHH----HHHHHHHHHhh-C-CCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc-------ccee---------e
Confidence 222221 22233333221 3 5999975 556688899999999999875542211 0000 0
Q ss_pred cCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEE-ecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 172 LPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVL-CNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
.| ....--.|..+.. ..+.+ +...+.+. .+++.|+- ++-|.-|+
T Consensus 123 ~P---la~~i~~P~~~~~--------~~~~~-----~G~~~~i~~y~G~~E~a--------------yl~~F~Pd----- 167 (335)
T PF04007_consen 123 LP---LADVIITPEAIPK--------EFLKR-----FGAKNQIRTYNGYKELA--------------YLHPFKPD----- 167 (335)
T ss_pred hh---cCCeeECCcccCH--------HHHHh-----cCCcCCEEEECCeeeEE--------------eecCCCCC-----
Confidence 01 0000000000000 00011 00001111 23332221 12222111
Q ss_pred ccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcC----CCCHHHHHHHHHHHHhCCCeEEEEEeCC-ccCCCC
Q 012194 251 QLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYA----PLKVEEMEELAWGLKATNQYFLWVVRES-EQAKLP 325 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~-~~~~~~ 325 (468)
++-+. -+.. .+++.|++=+-+.. ......+..+++.+++.+..+| .++.. .+..+-
T Consensus 168 ----------------~~vl~-~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV-~ipr~~~~~~~~ 228 (335)
T PF04007_consen 168 ----------------PEVLK-ELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVV-IIPRYEDQRELF 228 (335)
T ss_pred ----------------hhHHH-HcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEE-EecCCcchhhHH
Confidence 12222 2221 13446666554432 1133456678888888887643 44332 221111
Q ss_pred cchhhhccCCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCC
Q 012194 326 ENFSDETSQKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPAD 404 (468)
Q Consensus 326 ~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~ 404 (468)
+++ ++.+. .-+.-.+||.++++ +|+=|| ....||...|+|.|.+ +.++-...-+.+.+. |+ ...
T Consensus 229 ~~~------~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-- 293 (335)
T PF04007_consen 229 EKY------GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-- 293 (335)
T ss_pred hcc------CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe--
Confidence 211 13333 45555689999999 999877 7888999999999975 223333344557777 65 333
Q ss_pred CCCccCHHHHHHHHHHHh
Q 012194 405 EKGIVRREAIAHCISEIL 422 (468)
Q Consensus 405 ~~~~~~~~~l~~~i~~ll 422 (468)
.-+.+++.+.+.+.+
T Consensus 294 ---~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 ---STDPDEIVEYVRKNL 308 (335)
T ss_pred ---cCCHHHHHHHHHHhh
Confidence 226777777555543
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.95 E-value=3e-07 Score=89.30 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=92.7
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecch--H---HHhccc
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQ--L---EVLAHE 351 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq--~---~lL~~~ 351 (468)
+.+++..|.........+..+++++... +.+++++..+...+.+ ....+ .++++|.+.+|+++ . +.++.+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 3566777876532334455666666654 3455544433321111 11111 24578999999854 2 456667
Q ss_pred Ccceeeec----CCcchHHHHHHcCCceeecc-cccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc
Q 012194 352 AAGCFLTH----CGWNSTMEALSLGVPMVAMP-QWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER 426 (468)
Q Consensus 352 ~~~~~I~H----gG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~ 426 (468)
++ +|.. |-..++.||+++|+|+|+.- ..+ ....+++. ..|..++.. +.+++.++|.++++|++
T Consensus 259 d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~~-----d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 259 SA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTPG-----NIDEFVGKLNKVISGEV 326 (359)
T ss_pred cE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECCC-----CHHHHHHHHHHHHhCcc
Confidence 88 7753 33579999999999999865 332 33456666 678888754 99999999999999974
Q ss_pred ---HHHHHHHHHHHHHHH
Q 012194 427 ---GKEIRQNAGKWSNFA 441 (468)
Q Consensus 427 ---~~~~~~~a~~~~~~~ 441 (468)
.+.++++++++.+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (359)
T PRK09922 327 KYQHDAIPNSIERFYEVL 344 (359)
T ss_pred cCCHHHHHHHHHHhhHHH
Confidence 234555555544433
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.93 E-value=3.3e-07 Score=87.79 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=83.4
Q ss_pred CCceEEEEecCcCCC-CHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHhcccC
Q 012194 279 KGSVVYVSFGSYAPL-KVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVLAHEA 352 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~ 352 (468)
.++.+++..|+.... ..+.+-..+..+... +.+++++..+.....+ ....++ ..+++.+.++++.. .++..++
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 265 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREEL-EALAKELGLADRVHFLGFQSNPYPYLKAAD 265 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHH-HHHHHhcCCCccEEEecccCCHHHHHHhCC
Confidence 344777888887632 233333333333332 4455544322211111 011111 35788889988865 8999999
Q ss_pred cceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHH---HHHHHHHhcCc
Q 012194 353 AGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAI---AHCISEILEGE 425 (468)
Q Consensus 353 ~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l---~~~i~~ll~~~ 425 (468)
+ +|.- |..+++.||+++|+|+|+.... .....+++. +.|...+.. +.+.+ .+++.++++++
T Consensus 266 ~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~-----~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 266 L--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG-----DEAALAAAALALLDLLLDP 333 (353)
T ss_pred E--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC-----CHHHHHHHHHHHHhccCCh
Confidence 9 7743 3456899999999999986543 666778888 889888855 77777 56666666664
No 76
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.90 E-value=5.7e-08 Score=94.46 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCceEEEEecCcCCC-CHHHHHHHHHHHHhCCCe-EEEEEeCCcc--CCCCcchhhhc---cCCeEEEeecchH---HHh
Q 012194 279 KGSVVYVSFGSYAPL-KVEEMEELAWGLKATNQY-FLWVVRESEQ--AKLPENFSDET---SQKGLVVNWCPQL---EVL 348 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~~~~-~i~~~~~~~~--~~~~~~~~~~~---~~nv~~~~~vpq~---~lL 348 (468)
+++.|++++|..... ....+..++++++..... +++++.+... ..+.. ..... .+|+.+.+..++. .++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIRE-AGLEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHH-HHHhhccCCCCEEEECCcCHHHHHHHH
Confidence 455788888876643 455677788888765332 4444433211 11111 11112 4678887665543 678
Q ss_pred cccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 349 AHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 349 ~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
..|++ +|+.+| |.+.||+++|+|+|+++.. |. +..+.+. |++..+. . +.++|.+++.++++++
T Consensus 276 ~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~-----~-~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 KNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG-----T-DPEAILAAIEKLLSDE 338 (363)
T ss_pred HcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC-----C-CHHHHHHHHHHHhcCc
Confidence 88999 999999 7888999999999998743 22 4455667 7665553 2 5899999999999985
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.90 E-value=2.4e-06 Score=83.15 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=70.6
Q ss_pred ccCCeEEEeecchH---HHhcccCcceeeec----------CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcce
Q 012194 332 TSQKGLVVNWCPQL---EVLAHEAAGCFLTH----------CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG 398 (468)
Q Consensus 332 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~H----------gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G 398 (468)
..+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 46789999999865 66899999 7643 2357899999999999987654 366777777 889
Q ss_pred eEecCCCCCccCHHHHHHHHHHHhcCcc-HHHHHHHHHH
Q 012194 399 LKVPADEKGIVRREAIAHCISEILEGER-GKEIRQNAGK 436 (468)
Q Consensus 399 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 436 (468)
..++.. +.+++.+++.++++|++ .+++++++++
T Consensus 316 ~~~~~~-----d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 316 LLVPEG-----DVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EEECCC-----CHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 888754 88999999999999862 2334444443
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.89 E-value=4.7e-07 Score=86.82 Aligned_cols=127 Identities=14% Similarity=0.073 Sum_probs=82.1
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH---HHhcccCccee
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL---EVLAHEAAGCF 356 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~lL~~~~~~~~ 356 (468)
.+.+..|.... ......+++++++.+.++++...+...........+. ..+++.+.+++++. .+++.+++ +
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~--~ 247 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA--L 247 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE--E
Confidence 35556677742 2334557777888888877655443221111111111 35889999999975 57889999 6
Q ss_pred ee----cCC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 357 LT----HCG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 357 I~----HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
+. +-| ..++.||+++|+|+|+.... .....+..- ..|...+ . .+++.+++.++++.
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~-----~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD-----S--VEELAAAVARADRL 308 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC-----C--HHHHHHHHHHHhcc
Confidence 53 234 34899999999999987653 333444444 4676665 2 88999999988765
No 79
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.88 E-value=1.8e-06 Score=83.67 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=84.2
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHHHh---C--CCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecchH-HHhccc
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGLKA---T--NQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQL-EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~-~lL~~~ 351 (468)
+..+++..|+... ......+++++.. . +.+++++..+.....+.. ..+ ...+|+.+.++..+. .+|..+
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~a 263 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLER-LIKALGLSNRVKLLGLRDDIAAYYNAA 263 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHH-HHHhcCCCCcEEEecccccHHHHHHhh
Confidence 3467788887653 2223334444332 2 456666543321111111 111 134688898887654 899999
Q ss_pred CcceeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccH
Q 012194 352 AAGCFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERG 427 (468)
Q Consensus 352 ~~~~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~ 427 (468)
++ +|.-.. .+++.||+++|+|+|+. |...+...+++. |. .+... +.+++.+++.++++++
T Consensus 264 d~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~--~~~~~-----~~~~~~~~i~~ll~~~-- 327 (360)
T cd04951 264 DL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GL--IVPIS-----DPEALANKIDEILKMS-- 327 (360)
T ss_pred ce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ce--EeCCC-----CHHHHHHHHHHHHhCC--
Confidence 99 776432 57899999999999874 445566666665 54 44433 8899999999999543
Q ss_pred HHHHHHHHH
Q 012194 428 KEIRQNAGK 436 (468)
Q Consensus 428 ~~~~~~a~~ 436 (468)
+.+++....
T Consensus 328 ~~~~~~~~~ 336 (360)
T cd04951 328 GEERDIIGA 336 (360)
T ss_pred HHHHHHHHH
Confidence 244444433
No 80
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.87 E-value=3.1e-06 Score=82.63 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCceEEEEecCcCCC-CHHHHHHHHHHH-HhC-----CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHh
Q 012194 279 KGSVVYVSFGSYAPL-KVEEMEELAWGL-KAT-----NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVL 348 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~-~~~~~~~~~~a~-~~~-----~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL 348 (468)
.++.++++.|..... ..+.+-..+..+ .+. +.+++++..+.....+. ...+. +.+++.+.++..+. .+|
T Consensus 192 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~ 270 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACE-QMVRAAGLAHLVWLPGERDDVPALM 270 (374)
T ss_pred CCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHH-HHHHHcCCcceEEEcCCcCCHHHHH
Confidence 345788888887642 233322322222 222 34555554332111111 11111 34567776765544 999
Q ss_pred cccCcceeee--c--CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 349 AHEAAGCFLT--H--CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 349 ~~~~~~~~I~--H--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
+.+|+ +|. + |-..++.||+++|+|+|+.... .+...++.- ..|..++.. +.+++.+++.++++|
T Consensus 271 ~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~-----d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 271 QALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPPG-----DAVALARALQPYVSD 338 (374)
T ss_pred HhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCC-----CHHHHHHHHHHHHhC
Confidence 99999 773 2 4466999999999999996653 355566666 678888755 889999999999988
Q ss_pred c
Q 012194 425 E 425 (468)
Q Consensus 425 ~ 425 (468)
+
T Consensus 339 ~ 339 (374)
T TIGR03088 339 P 339 (374)
T ss_pred H
Confidence 5
No 81
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.87 E-value=8.5e-06 Score=78.88 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=87.4
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcch----hh--hccCCeEEEe-ecchH---H
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENF----SD--ETSQKGLVVN-WCPQL---E 346 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~----~~--~~~~nv~~~~-~vpq~---~ 346 (468)
+..+++.+|+.... ..+.+-..+..+.+. +.+++++.........-... .+ ...+||.+.+ |+|+. .
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 34667777877642 233333333444433 44555443322111110000 11 2457888885 48864 8
Q ss_pred HhcccCcceeeec------CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHH
Q 012194 347 VLAHEAAGCFLTH------CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420 (468)
Q Consensus 347 lL~~~~~~~~I~H------gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ 420 (468)
+++.+++ +|.- |..+++.||+++|+|+|+.+... ...+... +.|...... +.+++.+++.+
T Consensus 264 ~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~~-----d~~~~~~~l~~ 330 (366)
T cd03822 264 LFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPPG-----DPAALAEAIRR 330 (366)
T ss_pred HHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcCC-----CHHHHHHHHHH
Confidence 8999999 7732 34568999999999999977544 3445666 778887754 79999999999
Q ss_pred HhcCcc-HHHHHHHHHH
Q 012194 421 ILEGER-GKEIRQNAGK 436 (468)
Q Consensus 421 ll~~~~-~~~~~~~a~~ 436 (468)
+++|++ .+++++++++
T Consensus 331 l~~~~~~~~~~~~~~~~ 347 (366)
T cd03822 331 LLADPELAQALRARARE 347 (366)
T ss_pred HHcChHHHHHHHHHHHH
Confidence 999852 2334444444
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.82 E-value=1.4e-05 Score=78.37 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=86.7
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhh---hc---cCCeEEE-eecchH---HHh
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSD---ET---SQKGLVV-NWCPQL---EVL 348 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~---~~nv~~~-~~vpq~---~lL 348 (468)
.++++..|.... ...+..++++++.+ +.+++++.++.....+.+.+.+ .+ .+++... +++++. .++
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 278 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELL 278 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHH
Confidence 356677787653 23355556666554 4566655544322111111111 11 1345544 677754 779
Q ss_pred cccCcceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCH------HHHHHHH
Q 012194 349 AHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRR------EAIAHCI 418 (468)
Q Consensus 349 ~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~------~~l~~~i 418 (468)
..+|+ +|.= |...++.||+++|+|+|+... ......++.. +.|..++.. +. +++.++|
T Consensus 279 ~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~-----~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 279 SNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPD-----NSDADGFQAELAKAI 346 (388)
T ss_pred HhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCC-----CCcccchHHHHHHHH
Confidence 99999 7753 234577999999999998654 3466667777 778888755 33 8999999
Q ss_pred HHHhcCccH-HHHHHHHHH
Q 012194 419 SEILEGERG-KEIRQNAGK 436 (468)
Q Consensus 419 ~~ll~~~~~-~~~~~~a~~ 436 (468)
.++++|+.. +++.+++++
T Consensus 347 ~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 347 NILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 999998621 334444444
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.79 E-value=2e-05 Score=75.90 Aligned_cols=131 Identities=22% Similarity=0.255 Sum_probs=79.9
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcchhh---hccCCeEEEeecchH-HHhcccC
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENFSD---ETSQKGLVVNWCPQL-EVLAHEA 352 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~---~~~~nv~~~~~vpq~-~lL~~~~ 352 (468)
+..+++..|+.... ..+.+-..+..+.+ .+.+++++..+...... ....+ .+.+++.+.+...+. .++..++
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 270 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANL-ELLALKELGLEDKVILLGERSDVPALLNALD 270 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHH-HHHHHHhcCCCceEEEccccccHHHHHHhCC
Confidence 34677788887642 22333333333322 24566554332211110 01111 244677777766544 8999999
Q ss_pred cceeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 353 AGCFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 353 ~~~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+ +|..+. .+++.||+++|+|+|+... ..+...+.+. |..++.. +.+++.+++.++++|+
T Consensus 271 i--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~~---g~~~~~~-----~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 271 V--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGDT---GFLVPPG-----DPEALAEAIEALLADP 333 (365)
T ss_pred E--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhcC---CEEeCCC-----CHHHHHHHHHHHHhCh
Confidence 9 887654 4799999999999998543 3445555444 5556544 7899999999999986
No 84
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.78 E-value=7.1e-05 Score=77.88 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=61.3
Q ss_pred cCCeEEEeec-ch---HHHhcc----cCcceeeec---CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE
Q 012194 333 SQKGLVVNWC-PQ---LEVLAH----EAAGCFLTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK 400 (468)
Q Consensus 333 ~~nv~~~~~v-pq---~~lL~~----~~~~~~I~H---gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~ 400 (468)
.++|.+.++. +. .+++.. +++ ||.= =| ..++.||+++|+|+|+.-.. ..+..++.- .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEE
Confidence 4788888764 32 245543 345 7743 23 45899999999999986543 455666666 77988
Q ss_pred ecCCCCCccCHHHHHHHHHHHh----cCcc-HHHHHHHHH
Q 012194 401 VPADEKGIVRREAIAHCISEIL----EGER-GKEIRQNAG 435 (468)
Q Consensus 401 l~~~~~~~~~~~~l~~~i~~ll----~~~~-~~~~~~~a~ 435 (468)
+++. +++++.++|.+++ .|+. ++++.++++
T Consensus 691 Vdp~-----D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 691 IDPY-----HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred eCCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8865 8899999998876 4642 244555543
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=1.1e-05 Score=78.27 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=74.5
Q ss_pred EEEEecCcCCCCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchh--hhccCCeEEEeecchH---HHhcccCcce
Q 012194 283 VYVSFGSYAPLKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFS--DETSQKGLVVNWCPQL---EVLAHEAAGC 355 (468)
Q Consensus 283 I~is~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~~nv~~~~~vpq~---~lL~~~~~~~ 355 (468)
.++..|+... ......++++++.. +.+++++..+.........+. ....++|.+.+++|+. +++..+++
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 270 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL-- 270 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--
Confidence 3456788763 22344556666554 356555443322211111111 1245889999999986 56777888
Q ss_pred eeecCCc-----chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 356 FLTHCGW-----NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 356 ~I~HgG~-----~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
++.+.-. +++.||+++|+|+|+..... +...++.. |...... +. +.+++.++++|+
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~---g~~~~~~-----~~--l~~~i~~l~~~~ 331 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK---AIYFKVG-----DD--LASLLEELEADP 331 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC---eeEecCc-----hH--HHHHHHHHHhCH
Confidence 7665443 47999999999999875442 22222223 3333322 22 999999999985
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.75 E-value=6.9e-06 Score=79.52 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=82.0
Q ss_pred CCceEEEEecCcCC-CCHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchh-hhccCCeEEEeecchH-HHhcccCc
Q 012194 279 KGSVVYVSFGSYAP-LKVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFS-DETSQKGLVVNWCPQL-EVLAHEAA 353 (468)
Q Consensus 279 ~~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~-~~~~~nv~~~~~vpq~-~lL~~~~~ 353 (468)
.++.+++..|+... -..+.+...+..+.+. +.+++++..+.....+..... ....+++.+.++..+. +++..+++
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 269 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV 269 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE
Confidence 34467777888763 2334444444444433 445554433221111111110 1245788888886554 99999999
Q ss_pred ceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 354 GCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 354 ~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+|+- |-..++.||+++|+|+|+....+ ....++. +.|...... +++++.++|.++++|+
T Consensus 270 --~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~~-----~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 270 --FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLDE-----SPEIWAEEILKLKSED 332 (358)
T ss_pred --EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCCC-----CHHHHHHHHHHHHhCc
Confidence 7754 44679999999999999866544 2223333 445555433 6899999999999997
No 87
>PLN00142 sucrose synthase
Probab=98.75 E-value=8.6e-06 Score=84.61 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=59.6
Q ss_pred cCCeEEEe----ecchHHHhc----ccCcceeeec---CCcc-hHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE
Q 012194 333 SQKGLVVN----WCPQLEVLA----HEAAGCFLTH---CGWN-STMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK 400 (468)
Q Consensus 333 ~~nv~~~~----~vpq~~lL~----~~~~~~~I~H---gG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~ 400 (468)
.++|.+.+ .++..+++. .+++ ||.- -|+| ++.||+++|+|+|+... ......++.- ..|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEE
Confidence 46777654 334445554 3456 7753 4555 89999999999988654 3455566666 67988
Q ss_pred ecCCCCCccCHHHHHHHHHHH----hcCcc-HHHHHHHHHH
Q 012194 401 VPADEKGIVRREAIAHCISEI----LEGER-GKEIRQNAGK 436 (468)
Q Consensus 401 l~~~~~~~~~~~~l~~~i~~l----l~~~~-~~~~~~~a~~ 436 (468)
+++. +++++.++|.++ ++|++ .++|.+++++
T Consensus 714 V~P~-----D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 714 IDPY-----HGDEAANKIADFFEKCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred eCCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8865 788888888765 46752 2445555433
No 88
>PLN02275 transferase, transferring glycosyl groups
Probab=98.72 E-value=1.4e-05 Score=77.98 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCeEEEe-ecchH---HHhcccCcceeee-c-----CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEec
Q 012194 334 QKGLVVN-WCPQL---EVLAHEAAGCFLT-H-----CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 334 ~nv~~~~-~vpq~---~lL~~~~~~~~I~-H-----gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
+|+.+.. |+|+. .+|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+++- +.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 5576665 78875 55999999 773 1 12 3479999999999998753 3366777777 7898774
Q ss_pred CCCCCccCHHHHHHHHHHHh
Q 012194 403 ADEKGIVRREAIAHCISEIL 422 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll 422 (468)
+++++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4788999988775
No 89
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.69 E-value=9.5e-06 Score=79.94 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=88.3
Q ss_pred CceEEEEecCcCCCCHHHHHHHHHHH---HhC--CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH---HHhc
Q 012194 280 GSVVYVSFGSYAPLKVEEMEELAWGL---KAT--NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL---EVLA 349 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~~~a~---~~~--~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~lL~ 349 (468)
++..+++.|.... ...+..+++++ .+. +.+++++..+...+.+. ...+. +.++|.+.+|+|+. +++.
T Consensus 221 ~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~-~~~~~~~l~~~V~~~G~~~~~el~~~l~ 297 (406)
T PRK15427 221 TPLEIISVARLTE--KKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLR-TLIEQYQLEDVVEMPGFKPSHEVKAMLD 297 (406)
T ss_pred CCeEEEEEeCcch--hcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHH-HHHHHcCCCCeEEEeCCCCHHHHHHHHH
Confidence 3456677787763 22233444444 332 33444443332111111 11111 45789999999975 6888
Q ss_pred ccCcceeeec---------CCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHH
Q 012194 350 HEAAGCFLTH---------CGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCIS 419 (468)
Q Consensus 350 ~~~~~~~I~H---------gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~ 419 (468)
.+|+ +|.- -|. +++.||+++|+|+|+.... .....++.- ..|..++.. +.+++.++|.
T Consensus 298 ~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~~-----d~~~la~ai~ 365 (406)
T PRK15427 298 DADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPEN-----DAQALAQRLA 365 (406)
T ss_pred hCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCCC-----CHHHHHHHHH
Confidence 9999 7752 244 5689999999999987543 344556666 678888755 8999999999
Q ss_pred HHhc-Ccc-HHHHHHHHHH
Q 012194 420 EILE-GER-GKEIRQNAGK 436 (468)
Q Consensus 420 ~ll~-~~~-~~~~~~~a~~ 436 (468)
++++ |++ .+++.+++++
T Consensus 366 ~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 366 AFSQLDTDELAPVVKRARE 384 (406)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 9999 762 2344444443
No 90
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.69 E-value=1.1e-05 Score=78.00 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=79.7
Q ss_pred ceEEEEecCcCCC-CHHHHHHHHHHHHhCC--CeEEEEEeCCccCCCCcch--hhhccCCeEEEeecchH---HHhcccC
Q 012194 281 SVVYVSFGSYAPL-KVEEMEELAWGLKATN--QYFLWVVRESEQAKLPENF--SDETSQKGLVVNWCPQL---EVLAHEA 352 (468)
Q Consensus 281 ~~I~is~Gs~~~~-~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~nv~~~~~vpq~---~lL~~~~ 352 (468)
..+++..|+.... ..+.+...+..+...+ .++++..........-... .....+||.+.+++|+. .+|..++
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 3566677887632 3444444444444433 4555443222111100000 11256889999999875 6788999
Q ss_pred cceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 353 AGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 353 ~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+ +|.- |..+++.||+++|+|+|+..... ....+.+. |..+... +.+++.+++.++++|+
T Consensus 275 ~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~---~~~~~~~-----~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 275 A--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDA---ALYFDPL-----DPEALAAAIERLLEDP 337 (365)
T ss_pred h--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCc---eeeeCCC-----CHHHHHHHHHHHhcCH
Confidence 8 6643 34568999999999999865422 22222223 5556543 8999999999999986
No 91
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.67 E-value=1.7e-07 Score=74.38 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=79.7
Q ss_pred ceEEEEecCcCCCC---HHHHHHHHHHHHhCCC-eEEEEEeCCccCCCCcchhh-hccCC--eEEEeecch-HHHhcccC
Q 012194 281 SVVYVSFGSYAPLK---VEEMEELAWGLKATNQ-YFLWVVRESEQAKLPENFSD-ETSQK--GLVVNWCPQ-LEVLAHEA 352 (468)
Q Consensus 281 ~~I~is~Gs~~~~~---~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~-~~~~n--v~~~~~vpq-~~lL~~~~ 352 (468)
..+||+-||....+ .-......+.+.+.|. +.|+..|.+... .++.... +..+. +...+|-|- .+..+.++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Ad 82 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-FGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSAD 82 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-CCCHHHhhcccCCeEEEEEecCccHHHHHhhcc
Confidence 37999999987321 1223446667778886 677777765321 1111110 11112 333578886 58888899
Q ss_pred cceeeecCCcchHHHHHHcCCceeeccc----ccchhHHHHHHHhhhcc
Q 012194 353 AGCFLTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNGKYIMDVWKM 397 (468)
Q Consensus 353 ~~~~I~HgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~l~~~~g~ 397 (468)
+ ||+|+|.||++|.|..|+|.|+++- -+.|-.-|..+++. |-
T Consensus 83 l--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gy 128 (170)
T KOG3349|consen 83 L--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GY 128 (170)
T ss_pred E--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-Cc
Confidence 9 9999999999999999999999994 57899999999999 53
No 92
>PLN02949 transferase, transferring glycosyl groups
Probab=98.63 E-value=6.1e-05 Score=75.09 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=70.9
Q ss_pred ccCCeEEEeecchH---HHhcccCcceeee---cCCcc-hHHHHHHcCCceeeccccc---chhHHHHHHHhhhcceeEe
Q 012194 332 TSQKGLVVNWCPQL---EVLAHEAAGCFLT---HCGWN-STMEALSLGVPMVAMPQWS---DQSTNGKYIMDVWKMGLKV 401 (468)
Q Consensus 332 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~---HgG~~-s~~Eal~~GvP~l~~P~~~---DQ~~na~~l~~~~g~G~~l 401 (468)
+.++|.+..++|+. .+|..+++ +|+ +-|+| ++.||+++|+|+|+....+ |.-... ..-..|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~ 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLA 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccC
Confidence 46889999999865 67889998 773 33444 7999999999999976532 111100 010123222
Q ss_pred cCCCCCccCHHHHHHHHHHHhcC-cc-HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 402 PADEKGIVRREAIAHCISEILEG-ER-GKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 402 ~~~~~~~~~~~~l~~~i~~ll~~-~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
. +.+++.++|.+++++ ++ .++|.+++++..+++.. ....+.+.+.++++.+.
T Consensus 407 ------~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~-----e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 407 ------T-TVEEYADAILEVLRMRETERLEIAAAARKRANRFSE-----QRFNEDFKDAIRPILNS 460 (463)
T ss_pred ------C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHHhh
Confidence 1 789999999999985 32 23566666654444332 22244455555555443
No 93
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.61 E-value=3e-06 Score=81.96 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred CceEEEEecCcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCccC--CCCcchhhhc--cCCeEEEeecc---hHHHhc
Q 012194 280 GSVVYVSFGSYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQA--KLPENFSDET--SQKGLVVNWCP---QLEVLA 349 (468)
Q Consensus 280 ~~~I~is~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--~~~~~~~~~~--~~nv~~~~~vp---q~~lL~ 349 (468)
++.|++++=-.. ....+.+..+++++.+.+..++++.+..... .+...+.+.. .+|+.+.+.++ ...+++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 458778775443 2446789999999988876666655332111 0111111111 36788886555 458899
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+|++ +||.++.+- .||.+.|+|+|.+- .-| ...+. |..+.+- ..++++|.+++.++++
T Consensus 281 ~a~~--vitdSSggi-~EA~~lg~Pvv~l~--~R~-----e~~~~-g~nvl~v-----g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 281 NADA--VIGNSSSGI-IEAPSFGVPTINIG--TRQ-----KGRLR-ADSVIDV-----DPDKEEIVKAIEKLLD 338 (365)
T ss_pred hCCE--EEEcChhHH-HhhhhcCCCEEeec--CCc-----hhhhh-cCeEEEe-----CCCHHHHHHHHHHHhC
Confidence 9999 999986666 99999999999875 111 11133 3332322 2378999999999554
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.58 E-value=2.8e-05 Score=78.14 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=78.4
Q ss_pred CceEEEEecCcCC-CCHHHHHHHHHHHHhCCCeEEEEEeCCcc-CCCCcchhhhccCCeEE-EeecchH--HHhcccCcc
Q 012194 280 GSVVYVSFGSYAP-LKVEEMEELAWGLKATNQYFLWVVRESEQ-AKLPENFSDETSQKGLV-VNWCPQL--EVLAHEAAG 354 (468)
Q Consensus 280 ~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~nv~~-~~~vpq~--~lL~~~~~~ 354 (468)
+.++++..|.+.. -..+.+...+..+.+.+.+++++..+... ...-....++.+.++.+ ..|-... .+++.+|+
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv- 359 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM- 359 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE-
Confidence 4467777788763 22333333333333346777766433210 00001122345666654 3553332 67899999
Q ss_pred eeeec---CCcc-hHHHHHHcCCceeeccccc--chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 355 CFLTH---CGWN-STMEALSLGVPMVAMPQWS--DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 355 ~~I~H---gG~~-s~~Eal~~GvP~l~~P~~~--DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+|.- -|.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++.. +++++.+++.++++
T Consensus 360 -~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~-----d~~~la~~i~~~l~ 427 (466)
T PRK00654 360 -FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF-----NAEDLLRALRRALE 427 (466)
T ss_pred -EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC-----CHHHHHHHHHHHHH
Confidence 8853 3544 8889999999999865432 221111111344 668888755 89999999999886
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.58 E-value=5.3e-05 Score=73.95 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=83.2
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHh--CCCeEEEEEeCCccCCCCcch----h--hhccCCeEEEeec--chH---
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKA--TNQYFLWVVRESEQAKLPENF----S--DETSQKGLVVNWC--PQL--- 345 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~----~--~~~~~nv~~~~~v--pq~--- 345 (468)
+..+++..|.+... ..+.+...+..+.+ .+.+++++.++.........+ . ....+++.+..+. ++.
T Consensus 189 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 189 ERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 34677778887632 33443333333333 345666555432211100111 1 1134678888876 432
Q ss_pred HHhcccCcceeeecC---C-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 346 EVLAHEAAGCFLTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 346 ~lL~~~~~~~~I~Hg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
.+++.+++ |+.-. | ..++.||+++|+|+|+.... .....+..- ..|...+ +.+.+..++.++
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-------~~~~~a~~i~~l 334 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-------TVEEAAVRILYL 334 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-------CcHHHHHHHHHH
Confidence 78899999 88643 2 34999999999999987643 233445555 6676554 456778899999
Q ss_pred hcCcc-HHHHHHHHHH
Q 012194 422 LEGER-GKEIRQNAGK 436 (468)
Q Consensus 422 l~~~~-~~~~~~~a~~ 436 (468)
++|++ .+++.+++++
T Consensus 335 l~~~~~~~~~~~~a~~ 350 (372)
T cd03792 335 LRDPELRRKMGANARE 350 (372)
T ss_pred HcCHHHHHHHHHHHHH
Confidence 98852 2344444444
No 96
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.57 E-value=5e-06 Score=81.91 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=65.0
Q ss_pred cCCeEEEeecchH-HHhcccCcceee--ec--CCcc-hHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCC
Q 012194 333 SQKGLVVNWCPQL-EVLAHEAAGCFL--TH--CGWN-STMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEK 406 (468)
Q Consensus 333 ~~nv~~~~~vpq~-~lL~~~~~~~~I--~H--gG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~ 406 (468)
.++|.+.+++++. .+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. .+.. |.|..+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-C--
Confidence 4679999999965 88999999 76 32 4544 6999999999999988643321 1235 6676665 4
Q ss_pred CccCHHHHHHHHHHHhcCcc-HHHHHHHHHH
Q 012194 407 GIVRREAIAHCISEILEGER-GKEIRQNAGK 436 (468)
Q Consensus 407 ~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 436 (468)
+++++.++|.++++|++ .+++.+++++
T Consensus 348 ---~~~~la~ai~~ll~~~~~~~~~~~~ar~ 375 (397)
T TIGR03087 348 ---DPADFAAAILALLANPAEREELGQAARR 375 (397)
T ss_pred ---CHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 78999999999999862 2344444444
No 97
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.52 E-value=0.00014 Score=72.93 Aligned_cols=337 Identities=11% Similarity=0.028 Sum_probs=167.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
..||.+++.-..||+.- -.|.++|+++.-++.|.+-...+ +.++ |++ .+- +...+. ...+.+.++
T Consensus 226 ~~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~-M~aa-------G~e--~l~---d~~eLs-VmG~~EVL~ 290 (608)
T PRK01021 226 NTSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQ-MRAE-------GFH--PLF---NMEEFQ-VSGFWEVLL 290 (608)
T ss_pred CCeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHH-HHhC-------cCc--ccC---ChHHhh-hhhHHHHHH
Confidence 45888888888888875 45778888876677776543322 2221 222 111 110111 123333444
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEE-eCCCc--chHHHHHHHcCC--ceEEEcccchHHHHHHHHhhccCCCCCCCC
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIV-YDSFL--PWALDVAKKFGL--VGAAFLTQSCAVDCIYYHVNKGLLKLPLPD 167 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI-~D~~~--~~~~~~A~~lgi--P~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (468)
.+.. .....+++.+.+.++ + ||++| +|+-. ....-.+++.|+ |++.+.+..
T Consensus 291 ~l~~-l~~~~~~l~~~i~~~-k-PD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq--------------------- 346 (608)
T PRK01021 291 ALFK-LWYRYRKLYKTILKT-N-PRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS--------------------- 346 (608)
T ss_pred HHHH-HHHHHHHHHHHHHhc-C-CCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc---------------------
Confidence 4332 233455555555543 3 58888 47633 445667788896 987754311
Q ss_pred CccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCcc
Q 012194 168 SQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLY 247 (468)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~ 247 (468)
.|- + +..+. +.+.+ .. |. +-+-..+|.+... ....++.+||--+-+..
T Consensus 347 -----------VWA-----W-R~~Ri----kki~k-~v------D~--ll~IfPFE~~~y~--~~gv~v~yVGHPL~d~i 394 (608)
T PRK01021 347 -----------IWA-----W-RPKRK----TILEK-YL------DL--LLLILPFEQNLFK--DSPLRTVYLGHPLVETI 394 (608)
T ss_pred -----------cee-----e-CcchH----HHHHH-Hh------hh--heecCccCHHHHH--hcCCCeEEECCcHHhhc
Confidence 000 0 01111 11122 11 11 1122334443322 22346889995443311
Q ss_pred cccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHH--hC--CCeEEEEEeCCccCC
Q 012194 248 LDKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLK--AT--NQYFLWVVRESEQAK 323 (468)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~ 323 (468)
+. .+..++..+.+.-.+++++|-+-.||-...=...+-.++++.+ .. +.++++......
T Consensus 395 -----~~---------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~--- 457 (608)
T PRK01021 395 -----SS---------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK--- 457 (608)
T ss_pred -----cc---------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---
Confidence 00 1112333333333345678999999965322223333555554 32 345654332221
Q ss_pred CCcchhhhcc-C---CeEEEeecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecc-cccchhHHHHHHHhh--hc
Q 012194 324 LPENFSDETS-Q---KGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMP-QWSDQSTNGKYIMDV--WK 396 (468)
Q Consensus 324 ~~~~~~~~~~-~---nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~~l~~~--~g 396 (468)
..+.+.+... . .+.+..--...++++.||+ .+.-.|.- |+|+..+|+|||++= ...=-+.-|+++.+. .=
T Consensus 458 ~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~y 534 (608)
T PRK01021 458 YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPA 534 (608)
T ss_pred hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCe
Confidence 0111111111 1 1223211012589999999 88888765 569999999998742 222334456666650 01
Q ss_pred c-------eeEecCC--C-CCccCHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHH
Q 012194 397 M-------GLKVPAD--E-KGIVRREAIAHCISEILEGER-GKEIRQNAGKWSNFA 441 (468)
Q Consensus 397 ~-------G~~l~~~--~-~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~ 441 (468)
+ |..+-++ + .++.|+++|.+++ ++|.|++ .+++++..+++++.+
T Consensus 535 IsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 535 YSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred eehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 1 2222222 2 2378999999997 8888752 244555555555544
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=0.00055 Score=71.19 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=68.3
Q ss_pred ccCCeEEEeecchH-HHhcccCcceeee---cCC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCC
Q 012194 332 TSQKGLVVNWCPQL-EVLAHEAAGCFLT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEK 406 (468)
Q Consensus 332 ~~~nv~~~~~vpq~-~lL~~~~~~~~I~---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~ 406 (468)
+.++|.+.+|.++. .+|..+++ +|. +.| .+++.||+.+|+|+|+.... .....+++- ..|..++..
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~-- 642 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPAD-- 642 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCC--
Confidence 45889999998865 89999999 775 455 46899999999999997653 355556666 678888765
Q ss_pred CccCHHHHHHHHHHHhcCcc-HHHHHHHHHHHH
Q 012194 407 GIVRREAIAHCISEILEGER-GKEIRQNAGKWS 438 (468)
Q Consensus 407 ~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~ 438 (468)
+.+++++.+++.+++.+.. -.++++++++..
T Consensus 643 -d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 -TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 5566677777766654311 026666665543
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.46 E-value=9.1e-05 Score=70.89 Aligned_cols=166 Identities=23% Similarity=0.193 Sum_probs=91.9
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHH---h--CCCeEEEEEeCCccCCCCcchhhhccCCeEEEeec-chHHHhccc
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLK---A--TNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWC-PQLEVLAHE 351 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~---~--~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-pq~~lL~~~ 351 (468)
+++++|.+--||-...=...+-.++++.+ + .+.++++.+........-.........++.+.-.. .-.++|..|
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~a 261 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAA 261 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhC
Confidence 46779999999965311222233344432 2 24566655433211110001111122333333322 334899999
Q ss_pred CcceeeecCCcchHHHHHHcCCceeecc-cccchhHHHHHHHhhhcc-ee-------EecCC--CCCccCHHHHHHHHHH
Q 012194 352 AAGCFLTHCGWNSTMEALSLGVPMVAMP-QWSDQSTNGKYIMDVWKM-GL-------KVPAD--EKGIVRREAIAHCISE 420 (468)
Q Consensus 352 ~~~~~I~HgG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~~l~~~~g~-G~-------~l~~~--~~~~~~~~~l~~~i~~ 420 (468)
++ .+.-.|. .|+|+..+|+|||++= ...=.+.-|+++.+. .- |+ .+-++ |+ +.|++.|.+++..
T Consensus 262 d~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~isL~Niia~~~v~PEliQ~-~~~~~~i~~~~~~ 336 (373)
T PF02684_consen 262 DA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYISLPNIIAGREVVPELIQE-DATPENIAAELLE 336 (373)
T ss_pred cc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEeechhhhcCCCcchhhhcc-cCCHHHHHHHHHH
Confidence 99 7777764 5679999999997743 333345566666554 32 11 11111 32 7899999999999
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012194 421 ILEGERGKEIRQNAGKWSNFAKEAVAKGGSS 451 (468)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~ 451 (468)
+|+|+ +.++......+.+++....|.++
T Consensus 337 ll~~~---~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 337 LLENP---EKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HhcCH---HHHHHHHHHHHHHHHhhhhccCC
Confidence 99996 44555555555555544445554
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.46 E-value=6.4e-06 Score=79.69 Aligned_cols=125 Identities=15% Similarity=0.245 Sum_probs=89.3
Q ss_pred EEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH---HHhcccCcceeee-
Q 012194 283 VYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAAGCFLT- 358 (468)
Q Consensus 283 I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~~~I~- 358 (468)
.++..|++.. ......++++++..+.+++++..+... +.+.+...+||.+.+++|+. .++..+++ +|.
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~~----~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~p 268 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPEL----DRLRAKAGPNVTFLGRVSDEELRDLYARARA--FLFP 268 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChhH----HHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--EEEC
Confidence 4556777763 234566777888878777765544321 22233467899999999984 67889999 664
Q ss_pred -cCCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 359 -HCGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 359 -HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
.-|. .++.||+++|+|+|+....+ ....+++. +.|..++.. +++++.++|.++++|+
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~-----~~~~la~~i~~l~~~~ 327 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ-----TVESLAAAVERFEKNE 327 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC-----CHHHHHHHHHHHHhCc
Confidence 3343 46789999999999976433 44556666 778888755 8899999999999986
No 101
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.40 E-value=0.0006 Score=66.91 Aligned_cols=177 Identities=9% Similarity=0.128 Sum_probs=108.8
Q ss_pred hHhhhcCCCCceEEEEecCcCCC------C-H---HHHHHHHHHHHhCCCeEEEEEeCCccCC-CC------cchhhhcc
Q 012194 271 IKWLNDRAKGSVVYVSFGSYAPL------K-V---EEMEELAWGLKATNQYFLWVVRESEQAK-LP------ENFSDETS 333 (468)
Q Consensus 271 ~~~l~~~~~~~~I~is~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~~~-~~------~~~~~~~~ 333 (468)
..|+...+.+++|-||.-..... . . +.+.++++.+.+.|+++++.-.-.+... .+ ..+.+.++
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 44554434456888886644311 1 1 2334455556666888776653221100 01 12223333
Q ss_pred --CCeEEE--eecchH--HHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeE-ecCCCC
Q 012194 334 --QKGLVV--NWCPQL--EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLK-VPADEK 406 (468)
Q Consensus 334 --~nv~~~--~~vpq~--~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~-l~~~~~ 406 (468)
+++.+. ++-|.. .++.+|++ +|.. -+=++.-|+..|||.+.++. .+.....++.. |.... .+.+
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y---~~K~~~~~~~l-g~~~~~~~~~-- 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY---EHKSAGIMQQL-GLPEMAIDIR-- 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee---hHHHHHHHHHc-CCccEEechh--
Confidence 333443 233433 89999999 8875 34467778889999999998 25555566777 88755 5666
Q ss_pred CccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 407 GIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 407 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
+++.++|.+.+.++++|. +++++..++--+.+++ .......++++++.|.
T Consensus 376 -~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~~ 425 (426)
T PRK10017 376 -HLLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERIGEV 425 (426)
T ss_pred -hCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccC
Confidence 889999999999999985 4666666655555553 2345677777777654
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.33 E-value=0.00062 Score=68.71 Aligned_cols=136 Identities=10% Similarity=0.025 Sum_probs=80.7
Q ss_pred CceEEEEecCcCC-CCHHHHHHHHHHHHhCCCeEEEEEeCCc-cCCCCcchhhhccCCeEEEeecchH---HHhcccCcc
Q 012194 280 GSVVYVSFGSYAP-LKVEEMEELAWGLKATNQYFLWVVRESE-QAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAAG 354 (468)
Q Consensus 280 ~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~ 354 (468)
+.++++..|.... -..+.+...+..+.+.+.++++...+.. ....-..+.++.+.++.+....+.. .+++.+|+
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv- 368 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADF- 368 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCE-
Confidence 3467777788763 2344444444444445667765543321 1000011223356778777665653 68899999
Q ss_pred eeeec---CCcc-hHHHHHHcCCceeeccccc--chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 355 CFLTH---CGWN-STMEALSLGVPMVAMPQWS--DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 355 ~~I~H---gG~~-s~~Eal~~GvP~l~~P~~~--DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+|.- -|.| +.+||+++|+|+|+....+ |.-.+...-... +.|...+.. +++++.++|.+++.
T Consensus 369 -~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~~-----d~~~la~~i~~~l~ 436 (473)
T TIGR02095 369 -ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEEY-----DPGALLAALSRALR 436 (473)
T ss_pred -EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCCC-----CHHHHHHHHHHHHH
Confidence 8853 2444 7889999999999866532 211111000234 568777754 89999999999887
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=0.00091 Score=63.58 Aligned_cols=320 Identities=14% Similarity=0.139 Sum_probs=174.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVT-TYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
.+-+=.-|.|-++-.++|.++|.++ +..|++-| ++...+.+.+. -+..+....+| ++- ...
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~---~~~~v~h~YlP--~D~---------~~~-- 114 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL---FGDSVIHQYLP--LDL---------PIA-- 114 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH---cCCCeEEEecC--cCc---------hHH--
Confidence 3334445679999999999999999 88888876 66666666543 12234444555 221 001
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
+...++.. +| |++|.-..- +....-+++.|+|.+.+.-=- . ..
T Consensus 115 ---------v~rFl~~~----~P-~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL---S------------------~r 159 (419)
T COG1519 115 ---------VRRFLRKW----RP-KLLIIMETELWPNLINELKRRGIPLVLVNARL---S------------------DR 159 (419)
T ss_pred ---------HHHHHHhc----CC-CEEEEEeccccHHHHHHHHHcCCCEEEEeeee---c------------------hh
Confidence 22233332 34 877755444 446777889999999863100 0 00
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYLDK 250 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~~~ 250 (468)
+.+ .+..+-...+. -+...+.++..+-..-+ ....+... ++...|-+=.+..
T Consensus 160 S~~------------------~y~k~~~~~~~----~~~~i~li~aQse~D~~--Rf~~LGa~-~v~v~GNlKfd~~--- 211 (419)
T COG1519 160 SFA------------------RYAKLKFLARL----LFKNIDLILAQSEEDAQ--RFRSLGAK-PVVVTGNLKFDIE--- 211 (419)
T ss_pred hhH------------------HHHHHHHHHHH----HHHhcceeeecCHHHHH--HHHhcCCc-ceEEecceeecCC---
Confidence 000 01111111111 22334455555543322 22222221 2444453311100
Q ss_pred ccCCccccCCcCCCCCh---hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCC--CeEEEEEeCCccCCCC
Q 012194 251 QLEDDKDYGFSMFKPDN---ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATN--QYFLWVVRESEQAKLP 325 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~ 325 (468)
. ...+. ..+...+... + .+.|..+|. ....+.......++.+.. ...||+=. +.+.++
T Consensus 212 -~----------~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPR--HpERf~ 274 (419)
T COG1519 212 -P----------PPQLAAELAALRRQLGGH--R-PVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPR--HPERFK 274 (419)
T ss_pred -C----------ChhhHHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecC--ChhhHH
Confidence 0 00011 1233333332 2 466666663 334555566666665443 44555432 211111
Q ss_pred c--chhhh---------------ccCCeEEEeecchH-HHhcccCc----ceeeecCCcchHHHHHHcCCceeecccccc
Q 012194 326 E--NFSDE---------------TSQKGLVVNWCPQL-EVLAHEAA----GCFLTHCGWNSTMEALSLGVPMVAMPQWSD 383 (468)
Q Consensus 326 ~--~~~~~---------------~~~nv~~~~~vpq~-~lL~~~~~----~~~I~HgG~~s~~Eal~~GvP~l~~P~~~D 383 (468)
. +..++ ...+|.+.|-+--+ .++.-+++ +-++-+||.| .+|++++|+|+|.=|+...
T Consensus 275 ~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~N 353 (419)
T COG1519 275 AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFN 353 (419)
T ss_pred HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcccc
Confidence 1 00000 12478888877654 66666665 1134588887 5699999999999999999
Q ss_pred hhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccH-HHHHHHHHHHHHH
Q 012194 384 QSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERG-KEIRQNAGKWSNF 440 (468)
Q Consensus 384 Q~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~-~~~~~~a~~~~~~ 440 (468)
|.+-++++++. |.|+.++ +++.+.+++..+++|++. ++|.+++.++-+.
T Consensus 354 f~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 354 FSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred HHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999998 478899999998888522 3344444443333
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.29 E-value=0.00067 Score=67.19 Aligned_cols=81 Identities=19% Similarity=0.069 Sum_probs=57.7
Q ss_pred ccCCeEEEeecchH---HHhcccCcceeeecC---C-cchHHHHHHcCCceeecccccchhHHHHHHH---hhhcceeEe
Q 012194 332 TSQKGLVVNWCPQL---EVLAHEAAGCFLTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIM---DVWKMGLKV 401 (468)
Q Consensus 332 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~Hg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~---~~~g~G~~l 401 (468)
+.++|.+.+++|+. .+|..+++ +|+-. | .-++.||+++|+|+|+.-..+. ....++ .- ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 45789999999865 78899999 77522 2 2488999999999997654321 111222 34 567653
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCc
Q 012194 402 PADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 402 ~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
. +++++.++|.++++++
T Consensus 377 ~-------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 S-------TAEEYAEAIEKILSLS 393 (419)
T ss_pred C-------CHHHHHHHHHHHHhCC
Confidence 2 7899999999999875
No 105
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.29 E-value=4.8e-06 Score=79.68 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=77.3
Q ss_pred CCCceEEEEecCcCCCC-H---HHHHHHHHHHHhC-CCeEEEEEeCCcc--CCCCcchhhhccCCeEEEeecch---HHH
Q 012194 278 AKGSVVYVSFGSYAPLK-V---EEMEELAWGLKAT-NQYFLWVVRESEQ--AKLPENFSDETSQKGLVVNWCPQ---LEV 347 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~~~nv~~~~~vpq---~~l 347 (468)
..++.|++++=...... + ..+..++.++.+. +.++||.+++... ..+ .+..+.. +|+++.+.+++ ..+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i-~~~l~~~-~~v~~~~~l~~~~~l~l 255 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDII-IEKLKKY-DNVRLIEPLGYEEYLSL 255 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHH-HHHHTT--TTEEEE----HHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHH-HHHhccc-CCEEEECCCCHHHHHHH
Confidence 56779999985555444 3 3455566666655 7789999874321 111 1112233 58999876654 588
Q ss_pred hcccCcceeeecCCcchHH-HHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 348 LAHEAAGCFLTHCGWNSTM-EALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 348 L~~~~~~~~I~HgG~~s~~-Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
|+++++ +|+..| +++ ||.+.|+|+|.+=...+.+. .... |..+.+ ..+.++|.+++.+++.+.
T Consensus 256 l~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe----~r~~-~~nvlv------~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 256 LKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQE----GRER-GSNVLV------GTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HH----HHHT-TSEEEE------TSSHHHHHHHHHHHHH-H
T ss_pred HhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHH----HHhh-cceEEe------CCCHHHHHHHHHHHHhCh
Confidence 999999 999999 666 99999999999932222221 1222 444443 348999999999999873
No 106
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.29 E-value=7.4e-05 Score=72.86 Aligned_cols=150 Identities=20% Similarity=0.184 Sum_probs=92.6
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHh-----CCCeEEEEEeCCccCCCCcchh-hhccCCeEEEeecchH-HHhcccCcc
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKA-----TNQYFLWVVRESEQAKLPENFS-DETSQKGLVVNWCPQL-EVLAHEAAG 354 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~-~~~~~nv~~~~~vpq~-~lL~~~~~~ 354 (468)
..+++.|.... ...+..+++++.. .+.++++...+.....+..... ..+++++.+.++.++. .++..+++=
T Consensus 205 ~~i~~vgrl~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 282 (372)
T cd04949 205 HKIITVARLAP--EKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLS 282 (372)
T ss_pred CeEEEEEccCc--ccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEE
Confidence 45667777653 2233334444332 2456665544332111111000 1245778888877765 899999993
Q ss_pred eeeec--CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCcc-HHHHH
Q 012194 355 CFLTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGER-GKEIR 431 (468)
Q Consensus 355 ~~I~H--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~ 431 (468)
++.++ |...++.||+++|+|+|+..... .....++.. ..|..++.. +.+++.++|.++++|+. .+++.
T Consensus 283 v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~~-----d~~~la~~i~~ll~~~~~~~~~~ 353 (372)
T cd04949 283 LLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPKG-----DIEALAEAIIELLNDPKLLQKFS 353 (372)
T ss_pred EecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCCC-----cHHHHHHHHHHHHcCHHHHHHHH
Confidence 33343 33558999999999999865431 234556666 678888754 89999999999999863 35666
Q ss_pred HHHHHHHHHHH
Q 012194 432 QNAGKWSNFAK 442 (468)
Q Consensus 432 ~~a~~~~~~~~ 442 (468)
+++++.++.+.
T Consensus 354 ~~a~~~~~~~s 364 (372)
T cd04949 354 EAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHhh
Confidence 77666655443
No 107
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.27 E-value=0.00061 Score=67.27 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=53.1
Q ss_pred EEeecchHHHhcccCcceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHH
Q 012194 338 VVNWCPQLEVLAHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREA 413 (468)
Q Consensus 338 ~~~~vpq~~lL~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~ 413 (468)
+.++.+..+++..+|+ ||.- +=..+++||+++|+|+|+.-... + ..+..- +-|.... +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHHH
Confidence 4466666689999999 9877 33568999999999999986543 1 333334 4454442 6789
Q ss_pred HHHHHHHHhcCc
Q 012194 414 IAHCISEILEGE 425 (468)
Q Consensus 414 l~~~i~~ll~~~ 425 (468)
+.+++.++|+++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999864
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.23 E-value=0.00042 Score=70.06 Aligned_cols=135 Identities=11% Similarity=0.041 Sum_probs=79.4
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcc---hhhhccCCeEEEeecchH---HHhcccC
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKATNQYFLWVVRESEQAKLPEN---FSDETSQKGLVVNWCPQL---EVLAHEA 352 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~nv~~~~~vpq~---~lL~~~~ 352 (468)
+..+++..|.+... ..+.+...+..+.+.+.+++++..+.. ..... ..++.++|+.+....++. .+++.++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 372 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP--EYEEALRELAARYPGRVAVLIGYDEALAHLIYAGAD 372 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH--HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCC
Confidence 34677777887632 234444444444445566665543321 11111 122336788776444443 5789999
Q ss_pred cceeeecC---Cc-chHHHHHHcCCceeeccccc--chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 353 AGCFLTHC---GW-NSTMEALSLGVPMVAMPQWS--DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 353 ~~~~I~Hg---G~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
+ ++.-. |. .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++.. +++++.+++.++++.
T Consensus 373 v--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~-----~~~~l~~~i~~~l~~ 442 (476)
T cd03791 373 F--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY-----NADALLAALRRALAL 442 (476)
T ss_pred E--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC-----CHHHHHHHHHHHHHH
Confidence 9 77531 22 47789999999999865432 211111111134 579888855 899999999998853
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.22 E-value=2e-05 Score=67.66 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=86.4
Q ss_pred CCCceEEEEecCcCCC-CHHHHHHHHHHHH---hCCCeEEEEEeCCc-cCCCCcchhh--hccCCeEEEeecc--h-HHH
Q 012194 278 AKGSVVYVSFGSYAPL-KVEEMEELAWGLK---ATNQYFLWVVRESE-QAKLPENFSD--ETSQKGLVVNWCP--Q-LEV 347 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~-~~~~~~~~~~a~~---~~~~~~i~~~~~~~-~~~~~~~~~~--~~~~nv~~~~~vp--q-~~l 347 (468)
..++.+++..|..... ..+.+-.++.-+. ..+.. ++.+|... ...+ ....+ ...+++.+.++++ + ..+
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~-l~i~G~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~ 89 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYK-LVIVGDGEYKKEL-KNLIEKLNLKENIIFLGYVPDDELDEL 89 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEE-EEEESHCCHHHHH-HHHHHHTTCGTTEEEEESHSHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeE-EEEEccccccccc-ccccccccccccccccccccccccccc
Confidence 3455777788887642 2333333333332 23334 34444111 0000 01111 2457899999998 3 388
Q ss_pred hcccCcceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 348 LAHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 348 L~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+..+++ +|+. |...++.||+++|+|+|+.- ...+...+... +.|..++.. +.+++.++|.++++
T Consensus 90 ~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~~-----~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 90 YKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDPN-----DIEELADAIEKLLN 157 (172)
T ss_dssp HHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEESTT-----SHHHHHHHHHHHHH
T ss_pred ccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCCC-----CHHHHHHHHHHHHC
Confidence 999999 8877 67779999999999998743 66667777777 779888854 99999999999999
Q ss_pred Cc
Q 012194 424 GE 425 (468)
Q Consensus 424 ~~ 425 (468)
++
T Consensus 158 ~~ 159 (172)
T PF00534_consen 158 DP 159 (172)
T ss_dssp HH
T ss_pred CH
Confidence 85
No 110
>PLN02316 synthase/transferase
Probab=98.22 E-value=0.0058 Score=65.76 Aligned_cols=132 Identities=6% Similarity=0.019 Sum_probs=75.9
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHH---hCCCeEEEEEeCCccCCCCcc---hhh----hccCCeEEEeecchH---HHh
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLK---ATNQYFLWVVRESEQAKLPEN---FSD----ETSQKGLVVNWCPQL---EVL 348 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~---~~~----~~~~nv~~~~~vpq~---~lL 348 (468)
+++...|-+.. ...+..+++|+. +.+.+++++..+... .+... +.+ ..+++|.+....+.. .++
T Consensus 841 plVg~VGRL~~--qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~-~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 841 PLVGIITRLTH--QKGIHLIKHAIWRTLERNGQVVLLGSAPDP-RIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHhhcCcEEEEEeCCCCH-HHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 45555666652 222334444443 346777654433211 11111 122 135678776555553 689
Q ss_pred cccCcceeeec----CCcchHHHHHHcCCceeeccccc--chhH-------HHHHHHhhhcceeEecCCCCCccCHHHHH
Q 012194 349 AHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWS--DQST-------NGKYIMDVWKMGLKVPADEKGIVRREAIA 415 (468)
Q Consensus 349 ~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~--DQ~~-------na~~l~~~~g~G~~l~~~~~~~~~~~~l~ 415 (468)
+.+|+ |+.- +=..+.+||+++|+|.|+....+ |.-. +++..... +.|...+.. +++.|.
T Consensus 918 aaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~~-----d~~aLa 989 (1036)
T PLN02316 918 AGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDGA-----DAAGVD 989 (1036)
T ss_pred HhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCCC-----CHHHHH
Confidence 99999 8854 22458999999999998865432 2211 11111113 457777744 899999
Q ss_pred HHHHHHhcC
Q 012194 416 HCISEILEG 424 (468)
Q Consensus 416 ~~i~~ll~~ 424 (468)
.+|.++|.+
T Consensus 990 ~AL~raL~~ 998 (1036)
T PLN02316 990 YALNRAISA 998 (1036)
T ss_pred HHHHHHHhh
Confidence 999999875
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.21 E-value=0.0027 Score=61.98 Aligned_cols=125 Identities=21% Similarity=0.152 Sum_probs=72.6
Q ss_pred eEEEEecCcCC-CCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH---HHhcccCcceee
Q 012194 282 VVYVSFGSYAP-LKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL---EVLAHEAAGCFL 357 (468)
Q Consensus 282 ~I~is~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~~~I 357 (468)
++++..|++.. .+.+.+..+.. ...+.+++++........ .... ...+||.+.+++|+. .++.++|+.++-
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~--~~p~~~~vliG~~~~~~~-~~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P 280 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAK--ARPDWSFVLIGPVDVSID-PSAL--LRLPNVHYLGPKPYKELPAYLAGFDVAILP 280 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHH--HCCCCEEEEECCCcCccC-hhHh--ccCCCEEEeCCCCHHHHHHHHHhCCEEecC
Confidence 46666788874 23333333222 123556665443211111 1111 123799999999965 678899993321
Q ss_pred ------ecCCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 358 ------THCGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 358 ------~HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+.++. +.+.|++++|+|+|+.++ ...++.. + |..+... +.+++.++|.+++.++
T Consensus 281 ~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~~-----d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 281 FRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIAD-----DPEEFVAAIEKALLED 341 (373)
T ss_pred CccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeCC-----CHHHHHHHHHHHHhcC
Confidence 22333 458999999999998763 2223333 4 3344322 7999999999987653
No 112
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.17 E-value=0.00053 Score=69.14 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=91.2
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHh----C-CCeEEEEEeCCcc-CCCCcchhhh--ccCCeEEEeecchHHHhcccC
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKA----T-NQYFLWVVRESEQ-AKLPENFSDE--TSQKGLVVNWCPQLEVLAHEA 352 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~----~-~~~~i~~~~~~~~-~~~~~~~~~~--~~~nv~~~~~vpq~~lL~~~~ 352 (468)
+.++++.|.+.. ...+..+++|+.. . +.++++ +|.... +.+. ...+. +.++|.+.++.+...+++.++
T Consensus 319 ~~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~i-~G~G~~~~~l~-~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 319 PFSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFDI-YGEGGEKQKLQ-KIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEE-EECchhHHHHH-HHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 356677788763 2334445555432 2 334333 333211 1111 11111 357788889988889999999
Q ss_pred cceeee---cCC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccC----HHHHHHHHHHHhcC
Q 012194 353 AGCFLT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVR----REAIAHCISEILEG 424 (468)
Q Consensus 353 ~~~~I~---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~----~~~l~~~i~~ll~~ 424 (468)
+ +|. .-| ..++.||+++|+|+|+.-.. ..+...++.- ..|..++...+ .-+ .+++.++|.+++++
T Consensus 395 v--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~-~~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 395 L--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEE-EDDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred E--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcc-ccchhHHHHHHHHHHHHHhCh
Confidence 9 776 334 45899999999999986643 1234455555 56877763200 112 78899999999965
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 012194 425 ERGKEIRQNAGKWSNFAK 442 (468)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~ 442 (468)
+..++|.+++++.++.+.
T Consensus 468 ~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 468 NDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 444567777776555543
No 113
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=0.00041 Score=65.26 Aligned_cols=142 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHH----HhC-CCeEEEEEeCCccCCCCcch-hhhcc--CCeEEE---eecchHHH
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGL----KAT-NQYFLWVVRESEQAKLPENF-SDETS--QKGLVV---NWCPQLEV 347 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~----~~~-~~~~i~~~~~~~~~~~~~~~-~~~~~--~nv~~~---~~vpq~~l 347 (468)
.+..|++|+=-..+.. ..+..+.+++ +.. +..+|.-+..... + .++ ..++. +|+.+. +|.++..+
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~--v-~e~~~~~L~~~~~v~li~pl~~~~f~~L 278 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRPR--V-RELVLKRLKNVERVKLIDPLGYLDFHNL 278 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChh--h-hHHHHHHhCCCCcEEEeCCcchHHHHHH
Confidence 4458888764444443 4445555544 444 4455544433311 1 111 12333 457776 67788899
Q ss_pred hcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccH
Q 012194 348 LAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERG 427 (468)
Q Consensus 348 L~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~ 427 (468)
+.+|.+ ++|-.| |-.-||-..|+|++++-..-++|. ..+. |.-+.+ ..+.+.|.+++..+++++
T Consensus 279 ~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lv------g~~~~~i~~~~~~ll~~~-- 342 (383)
T COG0381 279 MKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILV------GTDEENILDAATELLEDE-- 342 (383)
T ss_pred HHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEe------CccHHHHHHHHHHHhhCh--
Confidence 999999 999987 446799999999999999999997 2334 433333 347799999999999996
Q ss_pred HHHHHHHHHHHHHH
Q 012194 428 KEIRQNAGKWSNFA 441 (468)
Q Consensus 428 ~~~~~~a~~~~~~~ 441 (468)
+..++.+....-.
T Consensus 343 -~~~~~m~~~~npY 355 (383)
T COG0381 343 -EFYERMSNAKNPY 355 (383)
T ss_pred -HHHHHHhcccCCC
Confidence 6555444433333
No 114
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.13 E-value=0.00011 Score=71.85 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=63.6
Q ss_pred hccCCeEEEeecchH---HHhcccCcceeeec----CCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEec
Q 012194 331 ETSQKGLVVNWCPQL---EVLAHEAAGCFLTH----CGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVP 402 (468)
Q Consensus 331 ~~~~nv~~~~~vpq~---~lL~~~~~~~~I~H----gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~ 402 (468)
....++.+.+++|+. .+++.+|+ +|.- .|. .++.||+++|+|+|+.... .+...++.. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEe
Confidence 356788899999864 67999999 7753 343 5778999999999997653 345556666 6787553
Q ss_pred CCCCCccCHHHHHHHHHHHhcCc
Q 012194 403 ADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
. ..+++++.++|.++++|+
T Consensus 327 ~----~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 327 E----PMTSDSIISDINRTLADP 345 (380)
T ss_pred C----CCCHHHHHHHHHHHHcCH
Confidence 2 238999999999999996
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.0018 Score=60.97 Aligned_cols=352 Identities=15% Similarity=0.106 Sum_probs=181.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEK 93 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~ 93 (468)
+||.++..-..|++.-- .|.++|.++=-+|.|++-..-+=..+ | +.++- +...+ ....+.+.+..
T Consensus 2 ~ki~i~AGE~SGDllGa-~LikaLk~~~~~~efvGvgG~~m~ae--------G--~~sl~---~~~el-svmGf~EVL~~ 66 (381)
T COG0763 2 LKIALSAGEASGDLLGA-GLIKALKARYPDVEFVGVGGEKMEAE--------G--LESLF---DMEEL-SVMGFVEVLGR 66 (381)
T ss_pred ceEEEEecccchhhHHH-HHHHHHHhhCCCeEEEEeccHHHHhc--------c--Ccccc---CHHHH-HHhhHHHHHHH
Confidence 68999999889998753 57788877622888877643322222 2 11111 11001 12233334443
Q ss_pred HHHhchHHHHHHHHHhcCCCCCccEEE-eCCCc--chHHHHHHHcC--CceEEEcccchHHHHHHHHhhccCCCCCCCCC
Q 012194 94 FWQIGPRSLCELVEKMNGSVVPVDCIV-YDSFL--PWALDVAKKFG--LVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDS 168 (468)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~~~~p~DlVI-~D~~~--~~~~~~A~~lg--iP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 168 (468)
+.. .....+++++.+..+ ++|++| .|.-. .....--++.| +|.|.+...+
T Consensus 67 lp~-llk~~~~~~~~i~~~--kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~Ps---------------------- 121 (381)
T COG0763 67 LPR-LLKIRRELVRYILAN--KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPS---------------------- 121 (381)
T ss_pred HHH-HHHHHHHHHHHHHhc--CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcc----------------------
Confidence 333 223445566665543 458887 67533 33444456677 9988754211
Q ss_pred ccccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeecccCCCccc
Q 012194 169 QLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPTVPSLYL 248 (468)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~~~~~~~ 248 (468)
.|- |+... .....+ .. |. +-....+|+....... .|..|||--+.+..
T Consensus 122 ----------VWA--------Wr~~R--a~~i~~-~~------D~--lLailPFE~~~y~k~g--~~~~yVGHpl~d~i- 169 (381)
T COG0763 122 ----------VWA--------WRPKR--AVKIAK-YV------DH--LLAILPFEPAFYDKFG--LPCTYVGHPLADEI- 169 (381)
T ss_pred ----------eee--------echhh--HHHHHH-Hh------hH--eeeecCCCHHHHHhcC--CCeEEeCChhhhhc-
Confidence 000 10000 011111 11 11 2222344544433222 24888996544311
Q ss_pred ccccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHh-----CCCeEEEEEeCCccCC
Q 012194 249 DKQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKA-----TNQYFLWVVRESEQAK 323 (468)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~~~~~~ 323 (468)
+ ..++++.+.+-+....+++++.+-.||-.+.=...+..+.+++.+ .+.+|++-+.+.....
T Consensus 170 ----~---------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~ 236 (381)
T COG0763 170 ----P---------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRR 236 (381)
T ss_pred ----c---------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHH
Confidence 0 122345555555444567799999999764222333334444433 2467776664432111
Q ss_pred CCcchhhhccCCe-EEEeecc--hH-HHhcccCcceeeecCCcchHHHHHHcCCceeeccc-ccchhHHHHHHHhhhcce
Q 012194 324 LPENFSDETSQKG-LVVNWCP--QL-EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQ-WSDQSTNGKYIMDVWKMG 398 (468)
Q Consensus 324 ~~~~~~~~~~~nv-~~~~~vp--q~-~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~-~~DQ~~na~~l~~~~g~G 398 (468)
+.... ...+. ...-++. +. ..+..||+ .+.-+|.. ++|+..+|+|||+.=- ..=-+.-|+++.+.|=++
T Consensus 237 ~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yis 310 (381)
T COG0763 237 IIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVS 310 (381)
T ss_pred HHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCccc
Confidence 11111 11111 1222222 22 68889999 88887765 4699999999987421 112234455665553222
Q ss_pred e-------EecCC--CCCccCHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 012194 399 L-------KVPAD--EKGIVRREAIAHCISEILEGE-RGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVAN 461 (468)
Q Consensus 399 ~-------~l~~~--~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (468)
+ .+-++ ++ ..+++.|.+++..++.|+ +.+++++...++.+.++. ++.+..+.+.+++.
T Consensus 311 LpNIi~~~~ivPEliq~-~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~ 378 (381)
T COG0763 311 LPNILAGREIVPELIQE-DCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLEL 378 (381)
T ss_pred chHHhcCCccchHHHhh-hcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHH
Confidence 2 11111 21 688999999999999996 335677777777777763 33444444444443
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.11 E-value=0.007 Score=59.59 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=70.3
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEE-EEEeCCccCCCCcchhhhccCCeEEEeecc-h---HHHhcccCccee
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFL-WVVRESEQAKLPENFSDETSQKGLVVNWCP-Q---LEVLAHEAAGCF 356 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q---~~lL~~~~~~~~ 356 (468)
.+++..|.........+..+++++..++..+- +.+|..... ..+++....+.. + ..+++.+|+ |
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~---------~~~~v~~~g~~~~~~~l~~~y~~aDv--f 310 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF---------TAGNVVNHGFETDKRKLMSALNQMDA--L 310 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc---------cccceEEecCcCCHHHHHHHHHhCCE--E
Confidence 34455555332233345678888887654332 333332111 123466666653 2 366778999 8
Q ss_pred eec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHH
Q 012194 357 LTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCIS 419 (468)
Q Consensus 357 I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~ 419 (468)
|.- |--.++.||+++|+|+|+....+ ... +... +.|..+++. +.++|.+.++
T Consensus 311 V~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~-----d~~~La~~~~ 366 (405)
T PRK10125 311 VFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEE-----EVLQLAQLSK 366 (405)
T ss_pred EECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCC-----CHHHHHhccC
Confidence 864 33468999999999999988764 222 3345 568888865 7888887543
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.07 E-value=8.8e-05 Score=72.48 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=84.2
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh------ccCCeEEEeecchHH---Hh
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE------TSQKGLVVNWCPQLE---VL 348 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~nv~~~~~vpq~~---lL 348 (468)
+++.++|.+|......+++.+..-.+.+++.+.-.+|........ ...+.++ -++++.+.++.|+.+ .+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 456699999999999999999999999999999888887654211 1122111 247888888888654 44
Q ss_pred cccCcceee---ecCCcchHHHHHHcCCceeecccc-cchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 349 AHEAAGCFL---THCGWNSTMEALSLGVPMVAMPQW-SDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 349 ~~~~~~~~I---~HgG~~s~~Eal~~GvP~l~~P~~-~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
..+|+ ++ ..+|..|++|||+.|||+|.+|-. .=...-|..+..+ |+...+.. +.++-.+.-.++-+|
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~------s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIAD------SEEEYVEIAVRLATD 430 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-S------SHHHHHHHHHHHHH-
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCC------CHHHHHHHHHHHhCC
Confidence 55777 65 468999999999999999999942 3445567778888 99876653 556665555577777
Q ss_pred c
Q 012194 425 E 425 (468)
Q Consensus 425 ~ 425 (468)
.
T Consensus 431 ~ 431 (468)
T PF13844_consen 431 P 431 (468)
T ss_dssp H
T ss_pred H
Confidence 5
No 118
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00012 Score=57.41 Aligned_cols=127 Identities=10% Similarity=0.120 Sum_probs=79.5
Q ss_pred EEEEecCcCCCCHHHHHH--HHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc-hHHHhcccCcceeeec
Q 012194 283 VYVSFGSYAPLKVEEMEE--LAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP-QLEVLAHEAAGCFLTH 359 (468)
Q Consensus 283 I~is~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q~~lL~~~~~~~~I~H 359 (468)
||+|.||....=...+.+ +..-.+.-..++|+.+|+...... .+ -+++-+++-+ .+.+...+++ +|+|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kpv-ag------l~v~~F~~~~kiQsli~darI--VISH 72 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIKPV-AG------LRVYGFDKEEKIQSLIHDARI--VISH 72 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCcccc-cc------cEEEeechHHHHHHHhhcceE--EEec
Confidence 789999986422233222 222223334588888877532111 11 1233344555 3477777777 9999
Q ss_pred CCcchHHHHHHcCCceeeccccc--------chhHHHHHHHhhhcceeEecCCCCCcc-CHHHHHHHHHHHh
Q 012194 360 CGWNSTMEALSLGVPMVAMPQWS--------DQSTNGKYIMDVWKMGLKVPADEKGIV-RREAIAHCISEIL 422 (468)
Q Consensus 360 gG~~s~~Eal~~GvP~l~~P~~~--------DQ~~na~~l~~~~g~G~~l~~~~~~~~-~~~~l~~~i~~ll 422 (468)
+|.||++.++..++|.|++|-.. .|-.-|..+.+. +.=....+- +. =.+.+.....+++
T Consensus 73 aG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spt---e~~L~a~l~~s~~~v~ 140 (161)
T COG5017 73 AGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPT---ELVLQAGLQVSVADVL 140 (161)
T ss_pred cCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCC---chhhHHhHhhhhhhhc
Confidence 99999999999999999999543 677788888888 766665533 22 2344444444444
No 119
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.96 E-value=0.002 Score=65.10 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred ccCCeEEEeecchHHHhcccCcceeeec----CCcchHHHHHHcCCceeecccccchhHHHHHHHhh----h-cceeEec
Q 012194 332 TSQKGLVVNWCPQLEVLAHEAAGCFLTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDV----W-KMGLKVP 402 (468)
Q Consensus 332 ~~~nv~~~~~vpq~~lL~~~~~~~~I~H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~----~-g~G~~l~ 402 (468)
+.+||.+.+...-.++++.+++ +|.- |--+++.||+++|+|+|+.. .......++.. + ..|..++
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVP 425 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEEC
Confidence 3578999986666799999999 7654 33468999999999999853 34455555552 0 2688887
Q ss_pred CCCCCccCHHHHHHHHHHHhcCc
Q 012194 403 ADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 403 ~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
.. +.+++.+++.++++|+
T Consensus 426 ~~-----d~~~la~ai~~ll~~~ 443 (475)
T cd03813 426 PA-----DPEALARAILRLLKDP 443 (475)
T ss_pred CC-----CHHHHHHHHHHHhcCH
Confidence 54 8999999999999986
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.78 E-value=0.0011 Score=65.45 Aligned_cols=146 Identities=14% Similarity=0.203 Sum_probs=85.6
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHhC--CCeEEEEEeCCccCCCCcchhh-----hccCCeEEEeecchH---HHh
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKAT--NQYFLWVVRESEQAKLPENFSD-----ETSQKGLVVNWCPQL---EVL 348 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~---~lL 348 (468)
++..+++.|..... ..+.+-..+..+.+. +..+.|.+-+.+.. .+.+.+ ...++|.+.+|+++. .++
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~--~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~ 306 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL--EDTLKELAESKPENISVNFTGELSNSEVYKLY 306 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH--HHHHHHHHHhcCCCceEEEecCCChHHHHHHH
Confidence 34667778887642 233332333333322 23555554332211 111111 124678889999976 455
Q ss_pred cccCcceeeecCC----cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 349 AHEAAGCFLTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 349 ~~~~~~~~I~HgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
..+++.++|...- .++++||+++|+|+|+... ......+.+. +.|..+.. .-+.+++.++|.++++|
T Consensus 307 ~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~----~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 307 KENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK----DPTPNELVSSLSKFIDN 377 (407)
T ss_pred hhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC----CCCHHHHHHHHHHHHhC
Confidence 5444333776543 4589999999999998653 3455666665 68887764 23789999999999998
Q ss_pred cc-HHHHHHHHHH
Q 012194 425 ER-GKEIRQNAGK 436 (468)
Q Consensus 425 ~~-~~~~~~~a~~ 436 (468)
+. .++|+++|++
T Consensus 378 ~~~~~~m~~~ar~ 390 (407)
T cd04946 378 EEEYQTMREKARE 390 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 62 1334444444
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.75 E-value=0.00014 Score=59.48 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=68.3
Q ss_pred eEEEEecCcCC-CCHHHHHH-HHHHHHhC--CCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH-HHhcccCccee
Q 012194 282 VVYVSFGSYAP-LKVEEMEE-LAWGLKAT--NQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL-EVLAHEAAGCF 356 (468)
Q Consensus 282 ~I~is~Gs~~~-~~~~~~~~-~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~-~lL~~~~~~~~ 356 (468)
+.++++|+... ...+.+-. +++.+.+. +.++++..... +.+.+...+||.+.+|++.. ++++.+++.+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~------~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP------DELKRLRRPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH------HHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 45566666653 23343333 55555433 33444332211 12221125699999999754 89999999555
Q ss_pred eec--CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 357 LTH--CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 357 I~H--gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+. .| .+++.|++.+|+|+|+.+. .....++.. +.|..+ .. +++++.+++.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~~-----~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-AN-----DPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT------HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-CC-----CHHHHHHHHHHHhcC
Confidence 442 23 4899999999999999776 133344446 788777 44 899999999999875
No 122
>PLN02939 transferase, transferring glycosyl groups
Probab=97.60 E-value=0.061 Score=57.28 Aligned_cols=133 Identities=9% Similarity=0.127 Sum_probs=76.8
Q ss_pred eEEEEecCcCCC-CHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCc---chhhhc--cCCeEEEeecchH---HHhcccC
Q 012194 282 VVYVSFGSYAPL-KVEEMEELAWGLKATNQYFLWVVRESEQAKLPE---NFSDET--SQKGLVVNWCPQL---EVLAHEA 352 (468)
Q Consensus 282 ~I~is~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~---~~~~~~--~~nv~~~~~vpq~---~lL~~~~ 352 (468)
+++...|.+... ..+.+...+..+...+.+++++..+... ..-. .+.++. .++|.+..+.+.. .+++.+|
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~-~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaAD 858 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVP-HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASD 858 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcH-HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCC
Confidence 566666666532 2333333333333346677655433211 0001 112222 4678888888864 6899999
Q ss_pred cceeeecC----CcchHHHHHHcCCceeeccccc--chhHH--HHHH-HhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 353 AGCFLTHC----GWNSTMEALSLGVPMVAMPQWS--DQSTN--GKYI-MDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 353 ~~~~I~Hg----G~~s~~Eal~~GvP~l~~P~~~--DQ~~n--a~~l-~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+ ||.-. -..+.+||+++|+|.|+....+ |.-.+ ...+ +.- +-|...... +++++.++|.+++.
T Consensus 859 I--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~~-----D~eaLa~AL~rAL~ 930 (977)
T PLN02939 859 M--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLTP-----DEQGLNSALERAFN 930 (977)
T ss_pred E--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecCC-----CHHHHHHHHHHHHH
Confidence 9 88642 2458999999999998876543 21111 1111 223 457777644 88899999888764
No 123
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.46 E-value=0.016 Score=55.25 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=80.1
Q ss_pred CCceEEEEecCcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEe--ecchH-HHhcccC
Q 012194 279 KGSVVYVSFGSYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVN--WCPQL-EVLAHEA 352 (468)
Q Consensus 279 ~~~~I~is~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~--~vpq~-~lL~~~~ 352 (468)
+++.|.+..|+.. .++.+.+.++++.+.+.+.++++..++.........+.+..+. ..+.+ -+++. .++++|+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPG-AVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCC
Confidence 4557777777644 4678889999998877778877665543221111222222222 22333 34454 9999999
Q ss_pred cceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhccee-EecCCCCCccCHHHHHHHHHHHh
Q 012194 353 AGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGL-KVPADEKGIVRREAIAHCISEIL 422 (468)
Q Consensus 353 ~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~-~l~~~~~~~~~~~~l~~~i~~ll 422 (468)
+ +|+. ..|.++=|.+.|+|.|++= ... +..+..=. |-.. .+....-..++++++.+++.++|
T Consensus 257 l--~I~~-DSgp~HlAaa~g~P~i~lf-g~t---~p~~~~P~-~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 A--VVGV-DTGLTHLAAALDKPTVTLY-GAT---DPGRTGGY-GKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred E--EEeC-CChHHHHHHHcCCCEEEEE-CCC---CHhhcccC-CCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 9 9998 7899999999999998751 111 11111001 1110 11110012789999999998765
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.44 E-value=0.001 Score=63.70 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=78.7
Q ss_pred ccCCeEEEeecchHHH---hcccCcceeeecC-------Cc------chHHHHHHcCCceeecccccchhHHHHHHHhhh
Q 012194 332 TSQKGLVVNWCPQLEV---LAHEAAGCFLTHC-------GW------NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVW 395 (468)
Q Consensus 332 ~~~nv~~~~~vpq~~l---L~~~~~~~~I~Hg-------G~------~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~ 395 (468)
..+||.+.+|+|+.++ |.. +.+++...- .+ +-+.+++++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 4578999999998755 444 443333221 11 1277889999999985 467788999999
Q ss_pred cceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCc-HHHHHHHHH
Q 012194 396 KMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSS-DKNIDDFVA 460 (468)
Q Consensus 396 g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~-~~~~~~~~~ 460 (468)
++|..++ +.+++.+++.++. +++.++|++|++++++++++ |.. .+++++++.
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~-----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN-----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHh
Confidence 9999987 5568999998854 34456899999999999985 543 455555443
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.43 E-value=0.0096 Score=52.98 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=37.7
Q ss_pred ccCCeEEEeecch---H-HHhcccCcceeeecCC----cchHHHHHHcCCceeeccccc
Q 012194 332 TSQKGLVVNWCPQ---L-EVLAHEAAGCFLTHCG----WNSTMEALSLGVPMVAMPQWS 382 (468)
Q Consensus 332 ~~~nv~~~~~vpq---~-~lL~~~~~~~~I~HgG----~~s~~Eal~~GvP~l~~P~~~ 382 (468)
..+|+.+.+++++ . .++..+++ +|+-.. .+++.||+.+|+|+|+.+...
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 3467888888632 2 44555898 888876 789999999999999987654
No 126
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.34 E-value=0.12 Score=53.17 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=54.5
Q ss_pred CeEEEeecchH-HHhcccCcceeeec---CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCcc
Q 012194 335 KGLVVNWCPQL-EVLAHEAAGCFLTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIV 409 (468)
Q Consensus 335 nv~~~~~vpq~-~lL~~~~~~~~I~H---gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~ 409 (468)
++.+.++.++. .+++.+++ ||.= =| ..+++||+++|+|+|+.-..+... +... +.|. +. .
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~-~----- 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY-K----- 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec-C-----
Confidence 46667777765 69999999 8863 23 458999999999999987654321 2222 2333 22 3
Q ss_pred CHHHHHHHHHHHhcCc
Q 012194 410 RREAIAHCISEILEGE 425 (468)
Q Consensus 410 ~~~~l~~~i~~ll~~~ 425 (468)
+.+++.++|.++|+++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 7899999999999986
No 127
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.24 E-value=0.069 Score=51.51 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=68.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeEE-EEcCCCCCCCCCCccccHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIAL-EAISDGYDQGGSAQAESIEAY 90 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f-~~~~~~~~~~~~~~~~~~~~~ 90 (468)
||||++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+.- +.++. .. . ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-----P~vd~vi~~~~--~~-~---~~~~--- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM-----PEVNEAIPMPL--GH-G---ALEI--- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC-----CccCEEEeccc--cc-c---hhhh---
Confidence 689999999999999999999999996 9999999998888888732 22222 12221 00 0 0000
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAA 141 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~ 141 (468)
.....+..++++. +||++|.=....-...++...|+|.-+
T Consensus 67 ---------~~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---------GERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---------HHHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122344455543 589999765555566777888888654
No 128
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.16 Score=48.59 Aligned_cols=266 Identities=16% Similarity=0.132 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHH
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAY 90 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~ 90 (468)
.|||+++-...-|++.-.+.+-+.|+++ +.++++++.+.+.+..+.. +.+.-+..-..... .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~-----p~I~~vi~~~~~~~------~----- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN-----PEIDKVIIIDKKKK------G----- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC-----hHhhhhcccccccc------c-----
Confidence 3799999999999999999999999998 5999999999988887732 12211111110000 0
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccchHHHHHHHHhhccCCCCCCCCCcc
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCAVDCIYYHVNKGLLKLPLPDSQL 170 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (468)
........+...+.+. .+|+||.=....-...++...++|.-+-.-....-
T Consensus 65 ------~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~~r--------------------- 115 (334)
T COG0859 65 ------LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRIGFDKKSAR--------------------- 115 (334)
T ss_pred ------cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCcccccccccch---------------------
Confidence 1112334455555542 48999987766667777888888876622100000
Q ss_pred ccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHhhcccccCeEEecchhhchHHHHHHHhccCCceeeccc-CCCcccc
Q 012194 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEEEVAEWLGKLWSLKTIGPT-VPSLYLD 249 (468)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~p~~~vgp~-~~~~~~~ 249 (468)
..+...+.. . .. .-.....++. ......... ..+. .+.
T Consensus 116 -----------------------~~~~~~~~~-~---~~-----~~~~~~~~~~-~~~l~~~~~----~~~~~~~~---- 154 (334)
T COG0859 116 -----------------------ELLLNKFYP-R---LD-----KPEGQHVVER-YLALLEDLG----LYPPPEPQ---- 154 (334)
T ss_pred -----------------------hHHHHHhhh-c---cC-----cccchhHHHH-HHHHHHHhc----CCCCCCCc----
Confidence 000000000 0 00 0000000000 001111100 0000 000
Q ss_pred cccCCccccCCcCCCCChhhHhHhhhcCCCCceEEEEec-CcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCC
Q 012194 250 KQLEDDKDYGFSMFKPDNESCIKWLNDRAKGSVVYVSFG-SYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLP 325 (468)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~is~G-s~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 325 (468)
... .+.. ...+...-+.... ++.|.+..| +.. .++.+.+.++++.+.+.+.++++..++ ......
T Consensus 155 ----~~~----~~~~-~~~~~~~~~~~~~-~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~-~e~e~~ 223 (334)
T COG0859 155 ----LDF----PLPR-PPIELAKNLAKFD-RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP-DEEERA 223 (334)
T ss_pred ----cCc----cccc-CHHHHHHHHHhcC-CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh-HHHHHH
Confidence 000 0000 0111111122211 568999999 442 568899999999999999776655544 322222
Q ss_pred cchhhhccCCeEEEee--cchH-HHhcccCcceeeecCCcchHHHHHHcCCceeec
Q 012194 326 ENFSDETSQKGLVVNW--CPQL-EVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 326 ~~~~~~~~~nv~~~~~--vpq~-~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
..+.+..+..+.+.+. +.|. .++.+|++ ||+. -.|-++=|-+.|+|.|++
T Consensus 224 ~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 224 EEIAKGLPNAVILAGKTSLEELAALIAGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHhcCCccccCCCCCHHHHHHHHhcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 2333334444334433 3444 88889999 9987 788899999999999874
No 129
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.96 E-value=0.11 Score=49.83 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred CCceEEEEecCcC----CCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeE-EEe--ecchH-HHhcc
Q 012194 279 KGSVVYVSFGSYA----PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGL-VVN--WCPQL-EVLAH 350 (468)
Q Consensus 279 ~~~~I~is~Gs~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~-~~~--~vpq~-~lL~~ 350 (468)
.++.|.+..|+.. .++.+.+.++++.+.+.+.++++.. +.+....-..+.+..+.++. +.+ .+.+. .++++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G-~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~ 251 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFG-SAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIAL 251 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEE-ChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHh
Confidence 4568888888742 4678889999998877777776554 33221111222222333332 223 33444 99999
Q ss_pred cCcceeeecCCcchHHHHHHcCCceeec
Q 012194 351 EAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 351 ~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
|++ +|+. -.|-++=|.+.|+|+|++
T Consensus 252 a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 252 AKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred CCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 999 9998 788999999999999874
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.93 E-value=0.22 Score=48.14 Aligned_cols=96 Identities=9% Similarity=0.128 Sum_probs=64.0
Q ss_pred CceEEEEecCcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCccC-CCCcchhhhcc-CCe-EEEee--cchH-HHhcc
Q 012194 280 GSVVYVSFGSYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQA-KLPENFSDETS-QKG-LVVNW--CPQL-EVLAH 350 (468)
Q Consensus 280 ~~~I~is~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-~nv-~~~~~--vpq~-~lL~~ 350 (468)
++.|.+..|+.. .++.+.+.++++.+.+.+.++++..++.+.+ ..-..+.+... .++ -+.+. +.+. .++++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 467888888864 4678889999999987788877665443211 00111211111 122 23333 4444 99999
Q ss_pred cCcceeeecCCcchHHHHHHcCCceeec
Q 012194 351 EAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 351 ~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
|++ ||++ -.|-++=|.+.|+|.|++
T Consensus 263 a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 263 AQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999 9998 789999999999999874
No 131
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.88 E-value=0.0012 Score=50.01 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=50.9
Q ss_pred hhhHhHhhhcCCCCceEEEEecCcCCC---CH--HHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeE
Q 012194 267 NESCIKWLNDRAKGSVVYVSFGSYAPL---KV--EEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGL 337 (468)
Q Consensus 267 ~~~~~~~l~~~~~~~~I~is~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~ 337 (468)
...+..|+...+.++.|++|+||.... .. ..+..++++++.+|..+|..++....+.+. .+|+||+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg-----~lP~nVR 97 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELG-----ELPDNVR 97 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCC-----S-TTTEE
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhC-----CCCCCCC
Confidence 355667998888999999999999843 22 578999999999999999999776554442 3677775
No 132
>PRK14098 glycogen synthase; Provisional
Probab=96.88 E-value=0.019 Score=57.97 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=81.0
Q ss_pred CceEEEEecCcCCC-CHHHHHHHHHHHHhCCCeEEEEEeCCcc--CCCCcchhhhccCCeEEEeecchH---HHhcccCc
Q 012194 280 GSVVYVSFGSYAPL-KVEEMEELAWGLKATNQYFLWVVRESEQ--AKLPENFSDETSQKGLVVNWCPQL---EVLAHEAA 353 (468)
Q Consensus 280 ~~~I~is~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~ 353 (468)
+.+++...|.+... ..+.+...+..+.+.+.++++...+... ..+ ..+.++.+++|.+..+++.. .+++.+|+
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi 384 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM 384 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhCCE
Confidence 34566677776632 3444444444444456676655433210 111 12233457889999888864 78999999
Q ss_pred ceeeecC---Cc-chHHHHHHcCCceeeccccc--chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHh
Q 012194 354 GCFLTHC---GW-NSTMEALSLGVPMVAMPQWS--DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEIL 422 (468)
Q Consensus 354 ~~~I~Hg---G~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll 422 (468)
++.-. |. .+.+||+++|+|.|+....+ |.-. ...+.. +.|...+.. +++++.++|.+++
T Consensus 385 --~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~~-----d~~~la~ai~~~l 449 (489)
T PRK14098 385 --LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHDY-----TPEALVAKLGEAL 449 (489)
T ss_pred --EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCCC-----CHHHHHHHHHHHH
Confidence 88643 22 36789999999988876532 2111 011235 678888744 8999999999876
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=96.86 E-value=0.04 Score=52.32 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=65.5
Q ss_pred ccCCeEEE---eecchH---HHhcccCcceeeec---CC-cchHHHHHHcCCceeeccc------ccch------hHHHH
Q 012194 332 TSQKGLVV---NWCPQL---EVLAHEAAGCFLTH---CG-WNSTMEALSLGVPMVAMPQ------WSDQ------STNGK 389 (468)
Q Consensus 332 ~~~nv~~~---~~vpq~---~lL~~~~~~~~I~H---gG-~~s~~Eal~~GvP~l~~P~------~~DQ------~~na~ 389 (468)
++++|.+. +++++. .+++.+++ ||.- =| ..++.||+++|+|+|+--. .+|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 56788887 455543 78999999 8864 24 4578999999999998533 2332 33333
Q ss_pred HHH--hhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Q 012194 390 YIM--DVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFA 441 (468)
Q Consensus 390 ~l~--~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 441 (468)
... .. |.|...+ ..+++++.++|..+++..+.+....++++.++.+
T Consensus 277 ~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 333 35 6676666 5599999999999955432223334444444443
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.84 E-value=0.027 Score=56.62 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=74.4
Q ss_pred eEEEEecCcCC-CC-HHHHHHHHHHHHhC-CCeEEEEEeCCccCCCCcchhhh--ccCCeEEEeecchH-HHhcccCcce
Q 012194 282 VVYVSFGSYAP-LK-VEEMEELAWGLKAT-NQYFLWVVRESEQAKLPENFSDE--TSQKGLVVNWCPQL-EVLAHEAAGC 355 (468)
Q Consensus 282 ~I~is~Gs~~~-~~-~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~~~~ 355 (468)
.++.+.|-+.. -. ...+..+...++.. +.+++++..+...+.+. ...+. +.++|.+.+|..+. .+|+.+++
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk-~la~elgL~d~V~FlG~~~Dv~~~LaaADV-- 475 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQ-KRAEQLGILERILFVGASRDVGYWLQKMNV-- 475 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHH-HHHHHcCCCCcEEECCChhhHHHHHHhCCE--
Confidence 45555565542 22 23344444444433 45655554332111111 11111 35889999987654 88999999
Q ss_pred eeec---CC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHH
Q 012194 356 FLTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCI 418 (468)
Q Consensus 356 ~I~H---gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i 418 (468)
||.. -| .+++.||+++|+|+|+... ..+...+.+- ..|..++.. +.+++.+++
T Consensus 476 fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~-----D~~aLa~ai 532 (578)
T PRK15490 476 FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA-----QTVNLDQAC 532 (578)
T ss_pred EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC-----ChhhHHHHH
Confidence 8863 44 5599999999999998764 3456667777 788888754 555555544
No 135
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.012 Score=57.96 Aligned_cols=132 Identities=16% Similarity=0.228 Sum_probs=94.4
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchh---hh---ccCCeEEEeecch---HHHh
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFS---DE---TSQKGLVVNWCPQ---LEVL 348 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~---~~---~~~nv~~~~~vpq---~~lL 348 (468)
|++.+||++|+..+...++.+..=...++..+..++|..++...+.+-..+. ++ -.+++++.+-.|. .+-+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 4567999999999999999999999999999999999987752222211221 11 2377888877764 3667
Q ss_pred cccCcceeee---cCCcchHHHHHHcCCceeecccccchhH---HHHHHHhhhcceeEecCCCCCccCHHHHHHHHH
Q 012194 349 AHEAAGCFLT---HCGWNSTMEALSLGVPMVAMPQWSDQST---NGKYIMDVWKMGLKVPADEKGIVRREAIAHCIS 419 (468)
Q Consensus 349 ~~~~~~~~I~---HgG~~s~~Eal~~GvP~l~~P~~~DQ~~---na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~ 419 (468)
.-+|+ |.- -||..|+.|+|+.|||+|..+ ++|+- -+..+..+ |+-..+... .++-++.++.
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA~s-----~~dYV~~av~ 573 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVADS-----RADYVEKAVA 573 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhcCC-----HHHHHHHHHH
Confidence 77888 774 799999999999999999876 56653 33444455 666555533 5566666663
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.74 E-value=0.057 Score=52.00 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=64.0
Q ss_pred CCceEEEEecCcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCccC-CCCcchhhhccC-CeE-EEe--ecchH-HHhc
Q 012194 279 KGSVVYVSFGSYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQA-KLPENFSDETSQ-KGL-VVN--WCPQL-EVLA 349 (468)
Q Consensus 279 ~~~~I~is~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-nv~-~~~--~vpq~-~lL~ 349 (468)
.++.|.+..|+.. .++.+.+.++++.+.+.+.++++..++.+.+ ..-..+.+..+. ++. +.+ .+.+. .+++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 4567888888765 4578888899988877788877664432111 111112112221 222 233 34444 9999
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeec
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
+|++ ||+. -.|.++=|.+.|+|.|++
T Consensus 260 ~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 260 HARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred hCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 9999 9999 899999999999999875
No 137
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.74 E-value=0.13 Score=48.89 Aligned_cols=134 Identities=12% Similarity=0.046 Sum_probs=76.3
Q ss_pred ceEEEEec-CcC--CCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEe--ecchH-HHhcccCcc
Q 012194 281 SVVYVSFG-SYA--PLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVN--WCPQL-EVLAHEAAG 354 (468)
Q Consensus 281 ~~I~is~G-s~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~--~vpq~-~lL~~~~~~ 354 (468)
+.|.+..| |.. .++.+.+.++++.+.+.+.++++..++.+....-..+.+.. .++.+.+ .+.+. .++.+|++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~a~l- 256 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAGAKA- 256 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccC-CcceecCCCCHHHHHHHHHhCCE-
Confidence 35544444 433 46788899999988777888765544432221112221111 2333433 34454 99999999
Q ss_pred eeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHh-h--hcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 355 CFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMD-V--WKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 355 ~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~-~--~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+|+. ..|.++=|.+.|+|.|++=-..|...++-.-.. . .-++ -... .++++.+.++++++|+
T Consensus 257 -~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~--~cm~---~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 257 -VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPG--KSMA---DLSAETVFQKLETLIS 321 (322)
T ss_pred -EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCC--cccc---cCCHHHHHHHHHHHhh
Confidence 9998 789999999999999875221111111100000 0 0001 1122 7788888888888764
No 138
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.72 E-value=0.47 Score=43.58 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=69.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc--ccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHH-HH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI--SKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIE-AY 90 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~-~~ 90 (468)
|||.| =.+..-|+.-+..+-.+|.++||+|.+-+-+.. .+....+ |+.+..+...- ..++. +.
T Consensus 1 mkVwi-DI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y------gf~~~~Igk~g-------~~tl~~Kl 66 (346)
T COG1817 1 MKVWI-DIGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY------GFPYKSIGKHG-------GVTLKEKL 66 (346)
T ss_pred CeEEE-EcCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh------CCCeEeecccC-------CccHHHHH
Confidence 34444 233445777788999999999999988775432 3455544 78888776321 11233 22
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccc
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
....-+. -.+.++..+. + +|+.+. -.++.+..+|--+|+|.+++.-+.
T Consensus 67 ~~~~eR~--~~L~ki~~~~----k-pdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 67 LESAERV--YKLSKIIAEF----K-PDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHH--HHHHHHHhhc----C-CceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 2221111 1233343332 3 499999 567889999999999999986554
No 139
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.60 E-value=0.018 Score=57.14 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=90.3
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh------ccCCeEEEeecchHHH----
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE------TSQKGLVVNWCPQLEV---- 347 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~nv~~~~~vpq~~l---- 347 (468)
+.+.+||++|--.-..++..++.-.+.+++.+..++|.....-..+ .+|... -|++|++.+-+...+=
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 4566999999888888999999999999999999999997652211 122111 2466766655543322
Q ss_pred -hcccCcceeeecCCcchHHHHHHcCCceeecccccch-hHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 348 -LAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQ-STNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 348 -L~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ-~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
|..--+.-..+. |..|.++.|+.|||||.+|...-- ..-+..+... |+|..+.+ +.++-.+.-.++-.|
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak------~~eEY~~iaV~Latd 904 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK------NREEYVQIAVRLATD 904 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh------hHHHHHHHHHHhhcC
Confidence 222222225565 788999999999999999975433 3345566677 99985553 444444444455555
No 140
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.01 E-value=0.092 Score=42.87 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=62.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
||++++.....| ...+++.|.++||+|++++.....+... ...++.+..++.+ . ......+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~-----~~~~i~~~~~~~~--~------k~~~~~~~-~ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE-----IIEGIKVIRLPSP--R------KSPLNYIK-Y 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh-----HhCCeEEEEecCC--C------CccHHHHH-H
Confidence 578888777666 4577999999999999999855432222 2358888888522 1 11122221 1
Q ss_pred HHhchHHHHHHHHHhcCCCCCccEEEeCCCcc---hHHHHHHHcC-CceEEE
Q 012194 95 WQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP---WALDVAKKFG-LVGAAF 142 (468)
Q Consensus 95 ~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~---~~~~~A~~lg-iP~i~~ 142 (468)
. .+..++++. + ||+|.+..... .+..++...+ +|.+..
T Consensus 64 ----~-~l~k~ik~~----~-~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 64 ----F-RLRKIIKKE----K-PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ----H-HHHHHhccC----C-CCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 233444432 3 69998776543 2445678888 888853
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.90 E-value=0.098 Score=39.30 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=50.8
Q ss_pred cCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhc-ceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHH
Q 012194 359 HCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWK-MGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKW 437 (468)
Q Consensus 359 HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g-~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~ 437 (468)
+|-..-+.|++++|+|+|.-+. ......+ .. | -++.. . +.+++.+++.++++|+ +..++-+++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~------~-~~~el~~~i~~ll~~~--~~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY------N-DPEELAEKIEYLLENP--EERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE------C-CHHHHHHHHHHHHCCH--HHHHHHHHHH
Confidence 5556689999999999998764 2233322 22 2 23333 2 8999999999999997 3444444444
Q ss_pred HHHHHHHHHcCCCcHHHHHHHH
Q 012194 438 SNFAKEAVAKGGSSDKNIDDFV 459 (468)
Q Consensus 438 ~~~~~~~~~~~g~~~~~~~~~~ 459 (468)
.+.+++ .-+...-++.++
T Consensus 74 ~~~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----hCCHHHHHHHHH
Confidence 444443 344444444443
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.89 E-value=0.63 Score=43.25 Aligned_cols=102 Identities=9% Similarity=0.024 Sum_probs=65.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeE-EEEcCCCCCCCCCCccccHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIA-LEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~-f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
|||++-..+.|++.-+..+.++|+++ +.+|++++.+...+.++.. +.++ ++.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~-----p~id~v~~~~~~~------~~~~~---- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM-----PEVDRVIVLPKKH------GKLGL---- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC-----CccCEEEEcCCcc------cccch----
Confidence 68999999999999999999999997 4899999999888877732 1222 22222110 00011
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAA 141 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~ 141 (468)
.....++.++.+ .++|+++.-........++...+++...
T Consensus 66 --------~~~~~~~~~l~~--~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --------GARRRLARALRR--RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --------HHHHHHHHHHhh--cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 122344444543 2589999766554445556666666543
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=95.82 E-value=0.53 Score=44.97 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=51.4
Q ss_pred eecchH---HHhcccCcceeee---cCC-cchHHHHHHcCCceeeccccc--chhH---HHHHHHh-----------hhc
Q 012194 340 NWCPQL---EVLAHEAAGCFLT---HCG-WNSTMEALSLGVPMVAMPQWS--DQST---NGKYIMD-----------VWK 396 (468)
Q Consensus 340 ~~vpq~---~lL~~~~~~~~I~---HgG-~~s~~Eal~~GvP~l~~P~~~--DQ~~---na~~l~~-----------~~g 396 (468)
.++|+. .+++.+|+ +|. ..| ..++.||+++|+|+|+.-..+ |.-. |.-.+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 347754 67999999 773 333 458999999999999976532 2211 1111100 1 3
Q ss_pred ceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHH
Q 012194 397 MGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGK 436 (468)
Q Consensus 397 ~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 436 (468)
+|..+. .+.+++.+++.++|.|++-++++++...
T Consensus 273 ~G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~ 306 (331)
T PHA01630 273 VGYFLD------PDIEDAYQKLLEALANWTPEKKKENLEG 306 (331)
T ss_pred cccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 454443 2567777888888876311244444333
No 144
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.17 E-value=0.19 Score=51.03 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCeEEEeecc--hH-HHhcccCcceeeecC---CcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCC
Q 012194 334 QKGLVVNWCP--QL-EVLAHEAAGCFLTHC---GWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKG 407 (468)
Q Consensus 334 ~nv~~~~~vp--q~-~lL~~~~~~~~I~Hg---G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~ 407 (468)
.+|.+.++.+ +. .++.++++ +|.=+ |.+|..||+.+|+|+| .......|+.. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 5777888888 43 88888888 88766 7889999999999999 44445555655 6677774
Q ss_pred ccCHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHH
Q 012194 408 IVRREAIAHCISEILEGE-RGKEIRQNAGKWSNFAKE 443 (468)
Q Consensus 408 ~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~~~~~~~~ 443 (468)
+..+|.+++..+|.+. .++.+...|.+.++...+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~ 508 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSS 508 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999996 456677777776666653
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.13 E-value=0.046 Score=45.52 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHHHHHH
Q 012194 29 PLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCELVEK 108 (468)
Q Consensus 29 p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (468)
-+..|+++|.++||+|+++++.......+ ....++.+..++..... ... ...... ..+..++ .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~-~~~~~~--------~~~~~~l-~ 68 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE----EEEDGVRVHRLPLPRRP---WPL-RLLRFL--------RRLRRLL-A 68 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S----EEETTEEEEEE--S-SS---SGG-GHCCHH--------HHHHHHC-H
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc----cccCCceEEeccCCccc---hhh-hhHHHH--------HHHHHHH-h
Confidence 46789999999999999999765554322 11347888888732211 000 000011 1222333 1
Q ss_pred hcCCCCCccEEEeCCCc-chHHHHHH-HcCCceEEEc
Q 012194 109 MNGSVVPVDCIVYDSFL-PWALDVAK-KFGLVGAAFL 143 (468)
Q Consensus 109 l~~~~~p~DlVI~D~~~-~~~~~~A~-~lgiP~i~~~ 143 (468)
.+. .++|+|.+.... .....++. ..++|++...
T Consensus 69 -~~~-~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 69 -ARR-ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp -HCT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred -hhc-cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 122 346999987643 22333444 8899998854
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.86 E-value=0.36 Score=48.27 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=71.0
Q ss_pred eecchH---HHhcccCcceeee---cCCcc-hHHHHHHcCCc----eeecccccchhHHHHHHHhhhcceeEecCCCCCc
Q 012194 340 NWCPQL---EVLAHEAAGCFLT---HCGWN-STMEALSLGVP----MVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGI 408 (468)
Q Consensus 340 ~~vpq~---~lL~~~~~~~~I~---HgG~~-s~~Eal~~GvP----~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~ 408 (468)
..+++. .+++.+|+ ++. +=|+| ++.||+++|+| +|+--+.+- +.. . +-|..+++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~---l-~~gllVnP~---- 407 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE---L-NGALLVNPY---- 407 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH---h-CCcEEECCC----
Confidence 456665 66889999 886 34655 78899999999 665554432 222 2 347777755
Q ss_pred cCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012194 409 VRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLI 463 (468)
Q Consensus 409 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 463 (468)
+.+++.++|.++|+.+. ++-+++.+++.+.+.+ -+...-.++|+++|.
T Consensus 408 -d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 -DIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred -CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 89999999999998642 2555666666666542 566777888888774
No 147
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=94.08 E-value=1.6 Score=43.36 Aligned_cols=135 Identities=10% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhCC-CeEEEEEeCCccCCCCcchh--hhccCCeEEE-eecc-h-HHHhcccC
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATN-QYFLWVVRESEQAKLPENFS--DETSQKGLVV-NWCP-Q-LEVLAHEA 352 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~nv~~~-~~vp-q-~~lL~~~~ 352 (468)
++..+.+| +.+.++.+....++++ ..|=+..+.. ..+.+. ++. +|+++. .+.+ . .+++..|+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----MSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----ccHHHHHHHhc-CCcEEECCcChHHHHHHHHhcc
Confidence 33466665 2566666666666654 3443322221 112221 223 667666 5677 3 39999999
Q ss_pred cceeeecCC--cchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHH
Q 012194 353 AGCFLTHCG--WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEI 430 (468)
Q Consensus 353 ~~~~I~HgG--~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 430 (468)
+=+-|+||+ ..++.||+.+|+|++..=...... ..+ . . |...... +.+++.++|.++|.++ +.+
T Consensus 350 lyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~--~-g~l~~~~-----~~~~m~~~i~~lL~d~--~~~ 415 (438)
T TIGR02919 350 IYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-A--S-ENIFEHN-----EVDQLISKLKDLLNDP--NQF 415 (438)
T ss_pred EEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-c--C-CceecCC-----CHHHHHHHHHHHhcCH--HHH
Confidence 988888876 569999999999999876442211 111 1 1 4455544 7899999999999996 355
Q ss_pred HHHHHHHHH
Q 012194 431 RQNAGKWSN 439 (468)
Q Consensus 431 ~~~a~~~~~ 439 (468)
+++..+-++
T Consensus 416 ~~~~~~q~~ 424 (438)
T TIGR02919 416 RELLEQQRE 424 (438)
T ss_pred HHHHHHHHH
Confidence 665554433
No 148
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.97 E-value=0.26 Score=42.89 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCC---CCCccccHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQG---GSAQAESIEAY 90 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~---~~~~~~~~~~~ 90 (468)
||||+.---+. +---+..|+++|.+.||+|+++.+...+.-.-... .....++......+.... .+....++..-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-t~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDc 78 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI-TLHKPLRVTEVEPGHDPGGVEAYAVSGTPADC 78 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS---SSSEEEEEEEE-TTCCSTTEEEEESS-HHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee-cCCCCeEEEEEEecccCCCCCEEEEcCcHHHH
Confidence 78888776655 44557899999987889999999987765443220 112244443332111110 12223333322
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCC----------Cc---chHHHHHHHcCCceEEEcccc
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDS----------FL---PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~----------~~---~~~~~~A~~lgiP~i~~~~~~ 146 (468)
. .-.+..+... .+||+||... ++ ..++.-|..+|||.|.+|...
T Consensus 79 v-----------~~al~~~~~~-~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 79 V-----------KLALDGLLPD-KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp H-----------HHHHHCTSTT-SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred H-----------HHHHHhhhcc-CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 2 2223333322 2369999643 22 335666788999999988644
No 149
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.90 E-value=0.68 Score=39.20 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=55.4
Q ss_pred hCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCC-CCCC-ccccHHHHHHHHHHhchHHHHHHHHHhcCCCCCc
Q 012194 39 HKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQ-GGSA-QAESIEAYLEKFWQIGPRSLCELVEKMNGSVVPV 116 (468)
Q Consensus 39 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~ 116 (468)
++||+|+++|......... |++...+...-.. .... -..+....+.. . ..+...+.+|++++..|
T Consensus 1 q~gh~v~fl~~~~~~~~~~--------GV~~~~y~~~~~~~~~~~~~~~~~e~~~~r----g-~av~~a~~~L~~~Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIPP--------GVRVVRYRPPRGPTPGTHPYVRDFEAAVLR----G-QAVARAARQLRAQGFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCCC--------CcEEEEeCCCCCCCCCCCcccccHHHHHHH----H-HHHHHHHHHHHHcCCCC
Confidence 4799999999554443332 7888877642211 0111 11122222111 1 23445556666656556
Q ss_pred cEEEeCCCcchHHHHHHHc-CCceEEEcc
Q 012194 117 DCIVYDSFLPWALDVAKKF-GLVGAAFLT 144 (468)
Q Consensus 117 DlVI~D~~~~~~~~~A~~l-giP~i~~~~ 144 (468)
|+|+.....-.++-+-+.+ ++|.+.+.-
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9999997766678888888 899988643
No 150
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.62 E-value=0.97 Score=48.56 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=66.1
Q ss_pred HHhcccCcceeeec---CCcc-hHHHHHHcCCc---eeecccccchhHHHHHHHhhhc-ceeEecCCCCCccCHHHHHHH
Q 012194 346 EVLAHEAAGCFLTH---CGWN-STMEALSLGVP---MVAMPQWSDQSTNGKYIMDVWK-MGLKVPADEKGIVRREAIAHC 417 (468)
Q Consensus 346 ~lL~~~~~~~~I~H---gG~~-s~~Eal~~GvP---~l~~P~~~DQ~~na~~l~~~~g-~G~~l~~~~~~~~~~~~l~~~ 417 (468)
.++..+++ |+.- -|+| +..|++++|+| +++++- --..+.. + | -|+.+++. +.+++.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe---~~G~~~~---l-~~~allVnP~-----D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSE---FAGAGQS---L-GAGALLVNPW-----NITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeC---CcCchhh---h-cCCeEEECCC-----CHHHHHHH
Confidence 78889999 8855 3777 67799999999 444442 2222222 2 4 47888865 99999999
Q ss_pred HHHHhc-CccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 418 ISEILE-GERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 418 i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
|.++|+ ++ ++-+++.+++.+...+ -+...-.++|+++|.+.
T Consensus 437 I~~aL~m~~--~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSD--EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCH--HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 999998 43 2455555556555553 45556677777776543
No 151
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=93.49 E-value=0.43 Score=47.96 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=64.4
Q ss_pred EeecchH---HHhcccCcceeee---cCCcc-hHHHHHHcCCc----eeecccccchhHHHHHHHhhhcceeEecCCCCC
Q 012194 339 VNWCPQL---EVLAHEAAGCFLT---HCGWN-STMEALSLGVP----MVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKG 407 (468)
Q Consensus 339 ~~~vpq~---~lL~~~~~~~~I~---HgG~~-s~~Eal~~GvP----~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~ 407 (468)
.+++++. .+++.+|+ +|. +-|+| ++.||+++|+| +|+--+.+- +.. . .-|..+++.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~~~---~-~~g~lv~p~--- 412 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----AEE---L-SGALLVNPY--- 412 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----hhh---c-CCCEEECCC---
Confidence 3677765 66899999 774 34544 77999999999 444322221 111 2 347777755
Q ss_pred ccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012194 408 IVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANL 462 (468)
Q Consensus 408 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l 462 (468)
+.+++.++|.++|+++. ++.++..++..+.+. .-+...-.+.++++|
T Consensus 413 --d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 --DIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred --CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 89999999999998751 122333333333332 245566677777765
No 152
>PRK14099 glycogen synthase; Provisional
Probab=93.36 E-value=0.84 Score=46.16 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=70.6
Q ss_pred eEEEEecCcCC-CCHHHHHHHHHHHHhCCCeEEEEEeCCc-cCCCCcchhhhccCCe-EEEeecchH-HHh-cccCccee
Q 012194 282 VVYVSFGSYAP-LKVEEMEELAWGLKATNQYFLWVVRESE-QAKLPENFSDETSQKG-LVVNWCPQL-EVL-AHEAAGCF 356 (468)
Q Consensus 282 ~I~is~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~nv-~~~~~vpq~-~lL-~~~~~~~~ 356 (468)
+++...|.... -..+.+...+..+.+.+.+++++..+.. ....-..+.++.++++ .+.+|-... .++ +.+|+ |
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDi--f 373 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADA--L 373 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCE--E
Confidence 45555666652 1233333333333344667665554321 0100011122345565 455764333 344 56888 8
Q ss_pred ee---cCCcc-hHHHHHHcCCceeeccccc--chhHHHH-H--HHhhhcceeEecCCCCCccCHHHHHHHHHH---HhcC
Q 012194 357 LT---HCGWN-STMEALSLGVPMVAMPQWS--DQSTNGK-Y--IMDVWKMGLKVPADEKGIVRREAIAHCISE---ILEG 424 (468)
Q Consensus 357 I~---HgG~~-s~~Eal~~GvP~l~~P~~~--DQ~~na~-~--l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~---ll~~ 424 (468)
+. +=|.| +.+||+++|+|.|+....+ |.-.... . .+.. +.|...+.. ++++|.+++.+ +++|
T Consensus 374 v~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~-----d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 374 LVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPV-----TADALAAALRKTAALFAD 447 (485)
T ss_pred EECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCC-----CHHHHHHHHHHHHHHhcC
Confidence 85 34444 6789999998777654322 2111110 0 1112 357777754 89999999987 5666
Q ss_pred c
Q 012194 425 E 425 (468)
Q Consensus 425 ~ 425 (468)
+
T Consensus 448 ~ 448 (485)
T PRK14099 448 P 448 (485)
T ss_pred H
Confidence 4
No 153
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.78 E-value=0.43 Score=43.50 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCeEEE-eecchHHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchh--HHHHHHHhhhcceeEecCCCCCccC
Q 012194 334 QKGLVV-NWCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQS--TNGKYIMDVWKMGLKVPADEKGIVR 410 (468)
Q Consensus 334 ~nv~~~-~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~--~na~~l~~~~g~G~~l~~~~~~~~~ 410 (468)
+|-.++ .|-.+.++|.++++ .|--+|. .+-+++-.|+|+|.+|-.+-|+ ..|.|=.+++|+.+.+-.. .
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~-----~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP-----E 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----c
Confidence 455554 77777789988888 7765543 2345788999999999999885 5788877877888887743 4
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHH
Q 012194 411 REAIAHCISEILEGERGKEIRQNAG 435 (468)
Q Consensus 411 ~~~l~~~i~~ll~~~~~~~~~~~a~ 435 (468)
+..-..+..++|.|+ ++...++
T Consensus 366 aq~a~~~~q~ll~dp---~r~~air 387 (412)
T COG4370 366 AQAAAQAVQELLGDP---QRLTAIR 387 (412)
T ss_pred hhhHHHHHHHHhcCh---HHHHHHH
Confidence 444445555599997 5555554
No 154
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.59 E-value=1.3 Score=40.85 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHH-HHHhC-CCeEEEEEeCCccCCCCcchhhh---ccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHH
Q 012194 296 EEMEELAW-GLKAT-NQYFLWVVRESEQAKLPENFSDE---TSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALS 370 (468)
Q Consensus 296 ~~~~~~~~-a~~~~-~~~~i~~~~~~~~~~~~~~~~~~---~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~ 370 (468)
..+..++. +.+.. +.+++++.++........++.+. ....+.+.+-++-.+||.+|+. |||-.+ .+-.||+.
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll 216 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALL 216 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHH
Confidence 33444444 44444 67888887764322222222222 2334445577788899999999 999865 47789999
Q ss_pred cCCceeeccc
Q 012194 371 LGVPMVAMPQ 380 (468)
Q Consensus 371 ~GvP~l~~P~ 380 (468)
+|+|++++.-
T Consensus 217 ~gkpVi~~G~ 226 (269)
T PF05159_consen 217 HGKPVIVFGR 226 (269)
T ss_pred cCCceEEecC
Confidence 9999999763
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.92 E-value=8.9 Score=35.84 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=74.7
Q ss_pred eEEEEecCcCC-CCHHHHHHHHHHHHhCC--CeEEEEEeCCcc-CCCCcchhhh--ccCCeEEEeecc---hHHHhcccC
Q 012194 282 VVYVSFGSYAP-LKVEEMEELAWGLKATN--QYFLWVVRESEQ-AKLPENFSDE--TSQKGLVVNWCP---QLEVLAHEA 352 (468)
Q Consensus 282 ~I~is~Gs~~~-~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~-~~~~~~~~~~--~~~nv~~~~~vp---q~~lL~~~~ 352 (468)
.+++..|.... ...+.+...+..+.... .+++++...... ..+.. .... ..+++.+..+++ ...++..++
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEK-LAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHH-HHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 56667777543 23344444444443332 244433322211 01111 1111 237788889998 236788788
Q ss_pred cceeeec---CCcch-HHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 353 AGCFLTH---CGWNS-TMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 353 ~~~~I~H---gG~~s-~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+ ++.- .|.|. +.||+++|+|+|.... ......+... +.|. +... . +.+++.+++..++++.
T Consensus 279 ~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~~---~-~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 279 V--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVPP---G-DVEELADALEQLLEDP 343 (381)
T ss_pred E--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecCC---C-CHHHHHHHHHHHhcCH
Confidence 8 7776 35544 5999999999976653 3333333333 3466 4432 2 6899999999999884
No 156
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=90.28 E-value=0.45 Score=43.24 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=57.9
Q ss_pred CCCceEEEEecCcC---CCCHHHHHHHHHHHHhCCCeEEEEEeCCcc-CCCCcchhhhccCC-eEEEe--ecch-HHHhc
Q 012194 278 AKGSVVYVSFGSYA---PLKVEEMEELAWGLKATNQYFLWVVRESEQ-AKLPENFSDETSQK-GLVVN--WCPQ-LEVLA 349 (468)
Q Consensus 278 ~~~~~I~is~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~n-v~~~~--~vpq-~~lL~ 349 (468)
.+++.|.+..|+.. .++.+.+.++++.+.+.++++++..+..+. ...-..+.+..+.+ +.+.+ -+.+ ..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 35568888888876 467889999999999888777655544431 11111111112222 23322 2344 38999
Q ss_pred ccCcceeeecCCcchHHHHHHcCCceeec
Q 012194 350 HEAAGCFLTHCGWNSTMEALSLGVPMVAM 378 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~GvP~l~~ 378 (468)
++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 183 ~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred cCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 9999 9998 678999999999999987
No 157
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=89.85 E-value=4.7 Score=43.18 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=68.5
Q ss_pred EEEeecchH---HHhcccCcceeeec---CCc-chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCcc
Q 012194 337 LVVNWCPQL---EVLAHEAAGCFLTH---CGW-NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIV 409 (468)
Q Consensus 337 ~~~~~vpq~---~lL~~~~~~~~I~H---gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~ 409 (468)
++.+++++. .+++.+|+ ++.- -|+ .++.||+++|+|-..+|+..+--.-+. ++ .-|+.+++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l-~~~llv~P~----- 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---EL-AEALLVNPN----- 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---Hh-CcCeEECCC-----
Confidence 344778876 68889999 7764 254 478999999775222222222111111 22 337777765
Q ss_pred CHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 410 RREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 410 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
+.+++.++|.++|+.+. ++.+++.+++.+.+. .-+...-++.|++.|.+.
T Consensus 414 d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 89999999999998642 134444444444443 245566677777776654
No 158
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.84 E-value=0.6 Score=36.86 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=28.2
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 14 VHCLVLSYPAQG---HINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 14 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
|||+|+.-+-.+ .-.-.++|+.+-++|||+|.+++..+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 789988877443 3356889999999999999999987653
No 159
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.74 E-value=1.9 Score=36.59 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=60.1
Q ss_pred EcCCCccCHHHHHHHHHHH-Hh-CCCeEEEEeCCcccccc--ccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 19 LSYPAQGHINPLLQFAKRL-DH-KGLKVTLVTTYFISKSL--HRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 19 ~~~~~~GH~~p~l~La~~L-~~-rGh~Vt~~~~~~~~~~~--~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
+..++.||..-|+.|.+.+ .+ ..++..+++..+..... ++..+.......+..+|..... .-....++...+..+
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v-~q~~~~~~~~~l~~~ 81 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREV-GQSYLTSIFTTLRAF 81 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEe-chhhHhhHHHHHHHH
Confidence 4457789999999999999 33 36666667766553332 1110001111134444421111 000011122222221
Q ss_pred HHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHc------CCceEEEccc
Q 012194 95 WQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKF------GLVGAAFLTQ 145 (468)
Q Consensus 95 ~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~l------giP~i~~~~~ 145 (468)
. ..+.-+.+. + ||+||+..-. .....+|..+ |.+.|.+-+.
T Consensus 82 ~--------~~~~il~r~-r-Pdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 82 L--------QSLRILRRE-R-PDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred H--------HHHHHHHHh-C-CCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1 112222222 3 5999999865 4467888888 9999987553
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.67 E-value=0.66 Score=37.81 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=40.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
|++.+|++.+.++-+|-.-..-++..|.++|++|++++.....+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~ 47 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 46789999999999999999999999999999999999765544443
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.49 E-value=2.4 Score=33.50 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
||++.+.++-.|.....-++..|.++|++|.++......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 589999999999999999999999999999888765443
No 162
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=89.28 E-value=0.9 Score=44.18 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEe-ecchHHHhcccCcceeeecCCcchHHHHHHcCCceee
Q 012194 299 EELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVN-WCPQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVA 377 (468)
Q Consensus 299 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~-~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~ 377 (468)
..+. .+.+.+..+++..++......... ....++++.++ ..+-.++|..+|+ +||=- .+.+.|.+..++|++.
T Consensus 220 ~~l~-~~~~~~~~li~k~Hp~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiif 293 (369)
T PF04464_consen 220 EKLN-FLLKNNYVLIIKPHPNMKKKFKDF--KEDNSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIF 293 (369)
T ss_dssp HHHH-HHHTTTEEEEE--SHHHHTT------TT-TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEE
T ss_pred HHHH-HHhCCCcEEEEEeCchhhhchhhh--hccCCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEE
Confidence 3344 666777777777655322212110 12346676663 4457799999999 99986 5688999999999998
Q ss_pred cccccchhHHHHHHHhhhcceeEecCCC--CCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Q 012194 378 MPQWSDQSTNGKYIMDVWKMGLKVPADE--KGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNI 455 (468)
Q Consensus 378 ~P~~~DQ~~na~~l~~~~g~G~~l~~~~--~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 455 (468)
...-.|++... . |.-......- ..--+.++|.++|..+++++ ..++++.++..+.+-. ...|.++.+.+
T Consensus 294 y~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~ 364 (369)
T PF04464_consen 294 YQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNFEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIV 364 (369)
T ss_dssp E-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHH
T ss_pred EeccHHHHhhc-----c-CCCCchHhhCCCceeCCHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHH
Confidence 77666665322 2 3222211100 00227899999999998775 3566666666666643 23344434444
Q ss_pred HH
Q 012194 456 DD 457 (468)
Q Consensus 456 ~~ 457 (468)
+.
T Consensus 365 ~~ 366 (369)
T PF04464_consen 365 NY 366 (369)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.36 E-value=14 Score=33.61 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCC-CCCCCCCccccHHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDG-YDQGGSAQAESIEAY 90 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~-~~~~~~~~~~~~~~~ 90 (468)
++||||+.---+. |---+.+|+++|.+.| +|+++.+...+.-.-... .....+++..+... -.. .+....++..-
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-t~~~pl~~~~~~~~~~~~-~y~v~GTPaDC 79 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM-TLGVPLRIKEYQKNNRFF-GYTVSGTPVDC 79 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc-cCCCCeEEEEEccCCCce-EEEEcCcHHHH
Confidence 4689887654333 2234778899998888 798888876554333210 11224555544311 000 12222333322
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCC----------c---chHHHHHHHcCCceEEEcc
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSF----------L---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~----------~---~~~~~~A~~lgiP~i~~~~ 144 (468)
+.-.+..+.. .+||+||+..- + ..|+.-|..+|||.|.+|.
T Consensus 80 -----------V~lal~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 80 -----------IKVALSHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred -----------HHHHHHhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1122223322 23599997542 2 3456667889999999874
No 164
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.31 E-value=13 Score=34.67 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCeEEE-eecch---HHHhcccCcceeeec--CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCC
Q 012194 334 QKGLVV-NWCPQ---LEVLAHEAAGCFLTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKG 407 (468)
Q Consensus 334 ~nv~~~-~~vpq---~~lL~~~~~~~~I~H--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~ 407 (468)
+|+.+. +++|. ..+|+.||++.|+|+ =|.||++-.+..|+|+++-- +-+.|.. +.+. |+-+..+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~-gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQ-GLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhC-CCeEEecCC---
Confidence 677775 67774 589999999888886 48999999999999998743 1222222 4445 776655655
Q ss_pred ccCHHHHHHHHHHH
Q 012194 408 IVRREAIAHCISEI 421 (468)
Q Consensus 408 ~~~~~~l~~~i~~l 421 (468)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 88888887775544
No 165
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.26 E-value=5.6 Score=33.22 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=25.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 23 AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 23 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
..|=-.-+..|+++|+++||+|++++.........
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~ 45 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE 45 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh
Confidence 34666678999999999999999998765544444
No 166
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.11 E-value=0.89 Score=37.68 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
.+|||++...|+-|-..-++.++..|.++|++|-=+-++.-++--... |+..+.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~------GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI------GFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe------eeEEEEcc
Confidence 468999999999999999999999999999999844444444333322 66666665
No 167
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.26 E-value=2.4 Score=43.14 Aligned_cols=79 Identities=8% Similarity=-0.070 Sum_probs=49.9
Q ss_pred chHHHhcccCcceeee---cCC-cchHHHHHHcCCceeecccccchhHHHHHHHhhhc--ceeEecCCCCC--ccCHHHH
Q 012194 343 PQLEVLAHEAAGCFLT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWK--MGLKVPADEKG--IVRREAI 414 (468)
Q Consensus 343 pq~~lL~~~~~~~~I~---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g--~G~~l~~~~~~--~~~~~~l 414 (468)
+..+++..|++ +|. +=| .-+..||+++|+|+|+....+=- .++..+... + .|+.+....+. .-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIED-PESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhcc-CCCceEEEecCCccchHHHHHHH
Confidence 46789999999 776 445 44899999999999997753210 112222222 2 46666533111 2256788
Q ss_pred HHHHHHHhcCc
Q 012194 415 AHCISEILEGE 425 (468)
Q Consensus 415 ~~~i~~ll~~~ 425 (468)
.+++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888654
No 168
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.75 E-value=14 Score=33.52 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=61.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCC--CCCCCCCCccccHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISD--GYDQGGSAQAESIEAYL 91 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~--~~~~~~~~~~~~~~~~~ 91 (468)
||||+.---+ =|---+.+|+++|.+.| +|+++.+...+.-.-... .....+++..+.. +. . .+....++..-.
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-t~~~pl~~~~~~~~~~~-~-~~~v~GTPaDcv 75 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL-TLFEPLRVGQVKVKNGA-H-IYAVDGTPTDCV 75 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc-CCCCCeEEEEeccCCCc-c-EEEEcCcHHHHH
Confidence 5676543322 12234778899999888 899999876655443210 1123455555541 11 0 122223332221
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCC----------c---chHHHHHHHcCCceEEEcc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSF----------L---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~----------~---~~~~~~A~~lgiP~i~~~~ 144 (468)
. --+..+.. ++||+||...- + ..|+.-|..+|||.|.+|.
T Consensus 76 ~-----------~gl~~l~~--~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 76 I-----------LGINELMP--EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred H-----------HHHHHhcc--CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1 11122222 23599996542 2 3466677889999999874
No 169
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.19 E-value=0.82 Score=36.85 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=36.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHR 58 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 58 (468)
|||++...|+.+=.. ...+.++|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 688888888766666 99999999999999999999988877773
No 170
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=85.97 E-value=21 Score=33.88 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=61.6
Q ss_pred CCeEE-Eeecch---HHHhcccCcceeeec--CCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCC
Q 012194 334 QKGLV-VNWCPQ---LEVLAHEAAGCFLTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKG 407 (468)
Q Consensus 334 ~nv~~-~~~vpq---~~lL~~~~~~~~I~H--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~ 407 (468)
+|+.+ .+++|. ..+|..|+++.|+|. =|+|+++-.|..|+|+++-- +.-.-+-+.+. |+=+....+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~-~ipVlf~~d--- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQ-GIPVLFYGD--- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhC-CCeEEeccc---
Confidence 57765 478885 489999999777775 58999999999999997643 33344456666 666655545
Q ss_pred ccCHHHHHHHHHHHhc
Q 012194 408 IVRREAIAHCISEILE 423 (468)
Q Consensus 408 ~~~~~~l~~~i~~ll~ 423 (468)
+++...++++=+.+..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999998887753
No 171
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=33 Score=32.45 Aligned_cols=127 Identities=16% Similarity=0.044 Sum_probs=76.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHH
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAY 90 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~ 90 (468)
.++.|+.++..|--||--+|..=|..|++.|++|.+++-.......+- -+.++++++.++.-. . .-....-+...
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l---~~hprI~ih~m~~l~-~-~~~~p~~~~l~ 84 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL---LNHPRIRIHGMPNLP-F-LQGGPRVLFLP 84 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH---hcCCceEEEeCCCCc-c-cCCCchhhhhH
Confidence 456789999999999999999999999999999999886554332221 125689999998422 1 00111122233
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCC-CcchHHHH----HHHcCCceEEEcccchH
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDS-FLPWALDV----AKKFGLVGAAFLTQSCA 148 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~-~~~~~~~~----A~~lgiP~i~~~~~~~~ 148 (468)
++.+..... .+..+.. .+++|.|+.-. -+.....+ ....|...++=+.+..+
T Consensus 85 lKvf~Qfl~-Ll~aL~~-----~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 85 LKVFWQFLS-LLWALFV-----LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred HHHHHHHHH-HHHHHHh-----ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 333333221 1222222 14568888654 33334443 35557788877765533
No 172
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=85.44 E-value=44 Score=33.76 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=74.1
Q ss_pred eEEEeecchH---HHhcccCcceeee---cCCcc-hHHHHHHcCC----ceeecccccchhHHHHHHHhhhcceeEecCC
Q 012194 336 GLVVNWCPQL---EVLAHEAAGCFLT---HCGWN-STMEALSLGV----PMVAMPQWSDQSTNGKYIMDVWKMGLKVPAD 404 (468)
Q Consensus 336 v~~~~~vpq~---~lL~~~~~~~~I~---HgG~~-s~~Eal~~Gv----P~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~ 404 (468)
+++.+.+|+. .++..+|+ ++. .-|+| +..|.++++. |+|.=-+.+ |. +.+ .-++.+++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~l-~~AllVNP~ 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VEL-KGALLTNPY 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hhc-CCCEEECCC
Confidence 4556888876 57778888 664 45888 4559999987 444333221 11 444 557888865
Q ss_pred CCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Q 012194 405 EKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISSK 466 (468)
Q Consensus 405 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 466 (468)
+.+++.++|.+.|+.+.. +=+++.+++.+.++. .....=.++|+++|.+..
T Consensus 434 -----d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 434 -----DPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQA 484 (487)
T ss_pred -----CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhcc
Confidence 999999999999998532 345555555555553 455677888999887653
No 173
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.18 E-value=5.1 Score=36.55 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
|||+++...+. -..|+++|.++||+|+..+.....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCc
Confidence 67887766554 457899999999999987665543
No 174
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=84.97 E-value=1.6 Score=41.08 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=32.5
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 14 VHCLVLSY-PAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 14 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
||++|++. |+-|-..-..++|-.++++|++|.+++++....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 67777665 455999999999999999999999999886543
No 175
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.72 E-value=24 Score=32.14 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=59.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC-CCCCCCCCCccccHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS-DGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~-~~~~~~~~~~~~~~~~~~~ 92 (468)
||||+.---+. |---+.+|+++|.+ +|+|+++.+...+.-.-.+ -.....++...+. ++.....+....++..-
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~s-it~~~pl~~~~~~~~~~~~~~~~v~GTPaDc-- 75 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHS-ITIYEPIIIKEVKLEGINSKAYSISGTPADC-- 75 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcccccc-ccCCCCeEEEeeccCCCCccEEEECCcHHHH--
Confidence 57776543333 22237888999965 6899999887665433211 0112234444432 10000011122232221
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCC----------Cc---chHHHHHHHcCCceEEEcc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDS----------FL---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~----------~~---~~~~~~A~~lgiP~i~~~~ 144 (468)
+.--+..+.. .+||+||... ++ ..|+.-|..+|||.|.+|.
T Consensus 76 ---------V~lal~~l~~--~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 76 ---------VRVALDKLVP--DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred ---------HHHHHHHhcC--CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 1112223322 2469999654 23 3466677889999999875
No 176
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=83.10 E-value=14 Score=34.85 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=32.2
Q ss_pred chHHHhcccCcceeeecCCcchHHHHHHcCCceeeccccc
Q 012194 343 PQLEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWS 382 (468)
Q Consensus 343 pq~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~ 382 (468)
|+..+|+.++. ++||=--.+-++||+..|+|+.++|...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67799999988 3455555778899999999999999876
No 177
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=82.63 E-value=28 Score=31.68 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=59.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCC--CCCCCCCCccccHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISD--GYDQGGSAQAESIEAYL 91 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~--~~~~~~~~~~~~~~~~~ 91 (468)
||||+.---+. |---+.+|+++|.+ +|+|+++.+...+.-.-.+. .....++...+.. +.. .+....++..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai-t~~~pl~~~~~~~~~~~~--~y~v~GTPaDcV 75 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI-TIRVPLWAKKVFISERFV--AYATTGTPADCV 75 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc-cCCCCceEEEeecCCCcc--EEEECCcHHHHH
Confidence 57776654433 23347788999964 68999998876654433210 1112344443321 110 122223332221
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCC----------Cc---chHHHHHHHcCCceEEEcc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDS----------FL---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~----------~~---~~~~~~A~~lgiP~i~~~~ 144 (468)
. --+..+.. .+||+||... ++ ..|..-|..+|||.|.+|.
T Consensus 76 ~-----------lal~~~~~--~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 76 K-----------LGYDVIMD--KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred H-----------HHHHhhcc--CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 1 12222222 2359999653 23 3356667889999999875
No 178
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.28 E-value=1.7 Score=36.94 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=25.5
Q ss_pred cEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 14 VHCLVLSYPAQ-GHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 14 ~~il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
|||.++.-.+. |+ .|+++...|||+||.++-...
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChH
Confidence 68887765544 54 578999999999999886443
No 179
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=82.11 E-value=1.2 Score=38.43 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 012194 13 LVHCLVLSYPAQGHINP------------LLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
..|||+.+.+++=.+.| =..||+++..+|++|+++.++.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 35677766666666544 3589999999999999999874
No 180
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=82.00 E-value=31 Score=31.54 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=59.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCC-CCCCCCCCccccHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISD-GYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~~~~~~~~~ 92 (468)
||||+.---+. |---+.+|+++|...| +|+++.+...+.-.-.. ......++...+.. +. . .+....++..-..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~a-iT~~~pl~~~~~~~~~~-~-~y~v~GTPaDCV~ 75 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLG-ITLHKPLRMYEVDLCGF-K-VYATSGTPSDTIY 75 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcccccc-ccCCCCcEEEEeccCCc-c-eEEeCCCHHHHHH
Confidence 56666554433 3355788999998887 79988876655333211 01122344444431 11 0 1222333332221
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCC-----------Cc---chHHHHHHHcCCceEEEcc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDS-----------FL---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~-----------~~---~~~~~~A~~lgiP~i~~~~ 144 (468)
-.+..+ . .+||+||+.. ++ ..|+.-|..+|||.|.+|.
T Consensus 76 -----------lal~~l-~--~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 76 -----------LATYGL-G--RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred -----------HHHHhc-c--CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 111222 1 3469999632 22 3355667889999999875
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=80.07 E-value=3.5 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLV 47 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 47 (468)
..-++++.+|...|...+-.+|+.|+++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35688899999999999999999999999999754
No 182
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=79.77 E-value=9.4 Score=34.45 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=61.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEK 93 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~ 93 (468)
||||+.---+ =|---+.+|++.|. .+++|+++.+...+.-+..+. .....++...+... .+....++.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl-Tl~~Plr~~~~~~~----~~av~GTPa----- 68 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL-TLHEPLRVRQVDNG----AYAVNGTPA----- 68 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc-ccccCceeeEeccc----eEEecCChH-----
Confidence 5666543322 24444678888888 999999999987765444220 01122333333320 111112221
Q ss_pred HHHhchHHHHHHHHHhcCCCCCccEEEeCCC----------c---chHHHHHHHcCCceEEEcccc
Q 012194 94 FWQIGPRSLCELVEKMNGSVVPVDCIVYDSF----------L---PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~----------~---~~~~~~A~~lgiP~i~~~~~~ 146 (468)
+.+.--+..+.++.. ||+||...- + ..|+.=|..+|+|.|.+|...
T Consensus 69 ------DCV~lal~~l~~~~~-pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 69 ------DCVILGLNELLKEPR-PDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred ------HHHHHHHHHhccCCC-CCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 122333344443322 599996542 2 335556788999999987643
No 183
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=79.21 E-value=40 Score=30.61 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=60.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEK 93 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~ 93 (468)
||||+.---+. |---+.+|+++|.+. |+|+++.+...+.-.-... .....+++..+..+ .+....++..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai-t~~~pl~~~~~~~~----~~~v~GTPaDcV-- 71 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL-TLTRPLRVEKVDNG----FYAVDGTPTDCV-- 71 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc-cCCCCeEEEEecCC----eEEECCcHHHHH--
Confidence 56766543332 233477899999988 7999999876654433210 11224455444211 112222332221
Q ss_pred HHHhchHHHHHHHHHhcCCCCCccEEEeCCC----------c---chHHHHHHHcCCceEEEcc
Q 012194 94 FWQIGPRSLCELVEKMNGSVVPVDCIVYDSF----------L---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~----------~---~~~~~~A~~lgiP~i~~~~ 144 (468)
.--+..+.. .+||+||...- + ..++.-|..+|||.|.+|.
T Consensus 72 ---------~~gl~~l~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 72 ---------HLALNGLLD--PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ---------HHHHHhhcc--CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 222222322 24699996542 2 3356667889999999874
No 184
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=79.17 E-value=10 Score=35.36 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHc----
Q 012194 296 EEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSL---- 371 (468)
Q Consensus 296 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~---- 371 (468)
+.+..+.+.+++.+..+++...... .... .+ ....+..++-..+++ +|+-||=||+++|+..
T Consensus 21 e~~~~i~~~L~~~g~~v~v~~~~~~--~~~~-------~~---~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~ 86 (291)
T PRK02155 21 EPLESLAAFLAKRGFEVVFEADTAR--NIGL-------TG---YPALTPEEIGARADL--AVVLGGDGTMLGIGRQLAPY 86 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhh--hcCc-------cc---ccccChhHhccCCCE--EEEECCcHHHHHHHHHhcCC
Confidence 3466677778888877665321110 0000 00 000122344446788 9999999999999874
Q ss_pred CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 372 GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 372 GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
++|++.+-.. .+|. +. +.+.+++.+.+.+++++
T Consensus 87 ~~pilGIn~G--------------~lGF-L~-----~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 87 GVPLIGINHG--------------RLGF-IT-----DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCEEEEcCC--------------Cccc-cc-----cCCHHHHHHHHHHHHcC
Confidence 6787766521 2232 22 45678888888888876
No 185
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=79.00 E-value=13 Score=32.52 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
+.||++.+.++-.|-....=++..|.++|++|+++...-..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~ 123 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPE 123 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 569999999999999999999999999999999887654433
No 186
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=78.79 E-value=9.8 Score=33.08 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCccc-cccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHHH
Q 012194 27 INPLLQFAKRLDHKGLKVTLVTTYFIS-KSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCEL 105 (468)
Q Consensus 27 ~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (468)
+.-.+.+.+.+.++|-+|.|+++.... ..+++. +...+-.|. ...|-.+.+............+.......+...
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~--a~~~~~~~i--~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~ 117 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKF--AERTGSFYV--NGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKN 117 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH--HHHcCCeee--cCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777789999999987543 333322 111122222 222333222222222222222211111222333
Q ss_pred HHHhcCCCCCccEEEe-CCCc-chHHHHHHHcCCceEEEcccc
Q 012194 106 VEKMNGSVVPVDCIVY-DSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 106 l~~l~~~~~p~DlVI~-D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
+..+......||+||+ |+.. ..+..=|.++|||.|.+.-+.
T Consensus 118 ~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 118 LGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 3333323344598885 4433 557888999999999986544
No 187
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.68 E-value=16 Score=34.57 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=33.0
Q ss_pred cEEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 14 VHCLVLSYPA-QGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 14 ~~il~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
+||+|++.=| -|-..-..++|-.|++.|.+|.+++++....
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 6888777654 4998889999999999999988888765543
No 188
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.64 E-value=10 Score=35.29 Aligned_cols=58 Identities=7% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHhcccCcceeeecCCcchHHHHHH----cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHH
Q 012194 345 LEVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ 420 (468)
.++...+++ +|+-||=||++.|.. .++|++.+-.. .+|. +. +.+.+++.+++.+
T Consensus 59 ~~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-Lt-----~~~~~~~~~~l~~ 116 (287)
T PRK14077 59 DELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-LT-----DITVDEAEKFFQA 116 (287)
T ss_pred hhcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-CC-----cCCHHHHHHHHHH
Confidence 344456788 999999999998866 37788776421 1232 22 4567888888888
Q ss_pred HhcC
Q 012194 421 ILEG 424 (468)
Q Consensus 421 ll~~ 424 (468)
++++
T Consensus 117 i~~g 120 (287)
T PRK14077 117 FFQG 120 (287)
T ss_pred HHcC
Confidence 8876
No 189
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=78.58 E-value=2.3 Score=41.21 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=60.2
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCeEE-EEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 15 HCLVL-SYPAQGHINPLLQFAKRLDHKGLKVT-LVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 15 ~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt-~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
+|++. +..+-|-..-++.|.++|++||++|. |=+.|++.+-- |+..-.+.+..+++...
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~------------~H~~atG~~srNLD~~m------- 62 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPG------------YHTAATGRPSRNLDSWM------- 62 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCch------------hhhHhhCCccCCCchhh-------
Confidence 45553 44455999999999999999999996 44445543211 11111112221111111
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCC------------CcchHHHHHHHcCCceEEEcccchH
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDS------------FLPWALDVAKKFGLVGAAFLTQSCA 148 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~------------~~~~~~~~A~~lgiP~i~~~~~~~~ 148 (468)
...+.++.++.+-.++ .|+.|... -...+..+|+.+|+|+|.+......
T Consensus 63 ----m~~~~v~~~f~~~~~~---adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~ 123 (451)
T COG1797 63 ----MGEEGVRALFARAAAD---ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGL 123 (451)
T ss_pred ----cCHHHHHHHHHHhcCC---CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcch
Confidence 1223344444443332 35554322 1234789999999999988766543
No 190
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.00 E-value=51 Score=36.16 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=65.0
Q ss_pred eecchH---HHhcccCcceeeec---CCcc-hHHHHHHcCCc---eeecccccchhHHHHHHHhhhc-ceeEecCCCCCc
Q 012194 340 NWCPQL---EVLAHEAAGCFLTH---CGWN-STMEALSLGVP---MVAMPQWSDQSTNGKYIMDVWK-MGLKVPADEKGI 408 (468)
Q Consensus 340 ~~vpq~---~lL~~~~~~~~I~H---gG~~-s~~Eal~~GvP---~l~~P~~~DQ~~na~~l~~~~g-~G~~l~~~~~~~ 408 (468)
..+|+. +++..+++ ++.- -|+| ...|+++++.- +++++ +--.-|..+ | -|+.+++.
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~~L----~~~AllVNP~---- 512 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQSL----GAGAILVNPW---- 512 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHHHh----CCceEEECCC----
Confidence 446654 77788888 7754 4877 45599999552 22223 222333333 3 36777754
Q ss_pred cCHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012194 409 VRREAIAHCISEILE-GERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLISS 465 (468)
Q Consensus 409 ~~~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 465 (468)
+.+++.++|.+.|+ ++ ++-+++.+++.+.+. .-+...-++.|+++|.+.
T Consensus 513 -D~~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 513 -NITEVAASIAQALNMPE--EEREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred -CHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 99999999999997 43 244444455555444 245566677777777643
No 191
>PRK08506 replicative DNA helicase; Provisional
Probab=76.92 E-value=6.5 Score=39.57 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=70.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
=|++...|+.|-..-.+.+|...++.|+.|.|++.+-....+.....+...++.+..+..+.-. .+....+......+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~--~~e~~~~~~a~~~l 271 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLD--DDEWERLSDACDEL 271 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCC--HHHHHHHHHHHHHH
Confidence 3567778888999999999999888999999999886654433210011124444333211100 00011111122222
Q ss_pred HH----------hchHHHHHHHHHhcCCCCCccEEEeCCCcch-------------------HHHHHHHcCCceEEEcc
Q 012194 95 WQ----------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPW-------------------ALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 95 ~~----------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~lgiP~i~~~~ 144 (468)
.. .....++..++.+.......|+||+|++... ...+|..++||++.++.
T Consensus 272 ~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 272 SKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred HcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 11 0112344444444332223699999986411 23468899999998764
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.70 E-value=11 Score=32.81 Aligned_cols=46 Identities=11% Similarity=-0.089 Sum_probs=39.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.+-+|++.+.++-.|-....-++.-|..+|++|++++.....+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 3469999999999999999999999999999999998776654443
No 193
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.24 E-value=3.7 Score=35.62 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+.+||++--.|+.|=+.-...++++|.++||+|.++.++...+.+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 3468887666655544447999999999999999999887665544
No 194
>PRK14099 glycogen synthase; Provisional
Probab=76.16 E-value=4.6 Score=40.91 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 11 CRLVHCLVLSYP------AQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 11 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|++|||++++.- +.|=-.-+-+|.++|+++||+|.++.|.+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 467999998732 22333456688999999999999999854
No 195
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=76.13 E-value=39 Score=29.47 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSY--PAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
..+|++.++. ++-|--.-...||..|+++|++|.++=..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3477665443 34478888999999999999999887654
No 196
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=75.23 E-value=29 Score=29.19 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.1
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4555 89998865 6789999999999986
No 197
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=75.19 E-value=12 Score=30.81 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=67.8
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHh--cccCcceeeec
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVL--AHEAAGCFLTH 359 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL--~~~~~~~~I~H 359 (468)
.|.|-+||.. +....+++...|++.|..+-+.+-+.+. .|+.+ .+++ .-+ ..+++ ||.=
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--~p~~l----------~~~~---~~~~~~~~~v--iIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--TPERL----------LEFV---KEYEARGADV--IIAV 62 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--SHHHH----------HHHH---HHTTTTTESE--EEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--CHHHH----------HHHH---HHhccCCCEE--EEEE
Confidence 4566667754 5778899999999998665433322211 11111 0111 111 23455 9988
Q ss_pred CCcchHHHHHH---cCCceeecccccchhHHHH----HHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHH
Q 012194 360 CGWNSTMEALS---LGVPMVAMPQWSDQSTNGK----YIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQ 432 (468)
Q Consensus 360 gG~~s~~Eal~---~GvP~l~~P~~~DQ~~na~----~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 432 (468)
+|...-+-++. .-.|+|.+|....+..... .++-.-|+++..--- ++-.++..+...|-. +.|+ ++++
T Consensus 63 AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~d~---~l~~ 137 (150)
T PF00731_consen 63 AGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LKDP---ELRE 137 (150)
T ss_dssp EESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT-H---HHHH
T ss_pred CCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cCCH---HHHH
Confidence 88654433332 3789999998876543222 222211454432211 002233333333322 3454 8899
Q ss_pred HHHHHHHHHHH
Q 012194 433 NAGKWSNFAKE 443 (468)
Q Consensus 433 ~a~~~~~~~~~ 443 (468)
+.+..++..++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888888775
No 198
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.88 E-value=70 Score=29.46 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=33.7
Q ss_pred CeEEEeecchH---HHhcccCcceeeecCCcchHHHHHHcCCcee--eccc
Q 012194 335 KGLVVNWCPQL---EVLAHEAAGCFLTHCGWNSTMEALSLGVPMV--AMPQ 380 (468)
Q Consensus 335 nv~~~~~vpq~---~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l--~~P~ 380 (468)
++.+.+|+||+ .+|--||+ -+-. |--|+.-|..+|+|.+ +.|+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQ 286 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQ 286 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCC
Confidence 35567999986 88999998 4444 6789999999999996 4664
No 199
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.29 E-value=5.4 Score=39.82 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCcc
Q 012194 11 CRLVHCLVLSYPAQGHINPL------------LQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
.+.+||++...|++=.+.|. .+||+++..+|++||+++++..
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 56789999999999888775 4899999999999999997653
No 200
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=73.94 E-value=17 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=20.7
Q ss_pred eeeecCCcc------hHHHHHHcCCceeeccc
Q 012194 355 CFLTHCGWN------STMEALSLGVPMVAMPQ 380 (468)
Q Consensus 355 ~~I~HgG~~------s~~Eal~~GvP~l~~P~ 380 (468)
++++|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 388887755 66789999999999863
No 201
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=73.52 E-value=3.6 Score=36.92 Aligned_cols=37 Identities=30% Similarity=0.271 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPL------------LQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~ 50 (468)
|||++.+.|++=.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 46666666665555442 47889999999999998743
No 202
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=73.17 E-value=11 Score=37.43 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=34.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLD-HKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 56 (468)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-....+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 356777888899999999998887 679999999988655433
No 203
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.39 E-value=5.9 Score=32.21 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=38.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKS 55 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 55 (468)
+++.||++.+.+..||-...--+++.|+..|.+|...+.-...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 578999999999999999999999999999999998765444333
No 204
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=72.19 E-value=13 Score=33.72 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=23.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|||+++...+-|+ .|++.|.++|+ |.+-+
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv 29 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSV 29 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEE
Confidence 7899988877775 68999999999 66533
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.12 E-value=4.4 Score=37.02 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+...++|+..+|.|-..=..++|.+|.++|+.|+|++.++....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 4568999999999999999999999998899999999988887777
No 206
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=72.12 E-value=11 Score=35.52 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 19 LSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 19 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
++.|+.|-.--.+.||++|++||..+.+++-.+..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 78899999999999999999999999999976655
No 207
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.59 E-value=7.9 Score=35.54 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=38.3
Q ss_pred ccCcceeeecCCcchHHHHHH------cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 350 HEAAGCFLTHCGWNSTMEALS------LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~------~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
.+++ +|+-||=||++.|+. .++|++.+-.. .+|. +. +.+++++.+.+.++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGF-L~-----~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGF-YT-----DWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Ccee-cc-----cCCHHHHHHHHHHHHc
Confidence 4677 999999999999986 48898877531 2232 22 3467788888888887
Q ss_pred C
Q 012194 424 G 424 (468)
Q Consensus 424 ~ 424 (468)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 6
No 208
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.13 E-value=28 Score=32.57 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHhcccCcceeeecCCcchHHHHHH----cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHH
Q 012194 345 LEVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ 420 (468)
.++...+++ +|+=||=||++.|.+ .++|++.+-.. .+|.. . +++.+++.+++.+
T Consensus 63 ~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL-~-----~~~~~~~~~~l~~ 120 (296)
T PRK04539 63 TELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFL-T-----QIPREYMTDKLLP 120 (296)
T ss_pred hhcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEe-e-----ccCHHHHHHHHHH
Confidence 344456888 999999999999975 37898876532 12322 2 4577889999999
Q ss_pred HhcC
Q 012194 421 ILEG 424 (468)
Q Consensus 421 ll~~ 424 (468)
++++
T Consensus 121 i~~g 124 (296)
T PRK04539 121 VLEG 124 (296)
T ss_pred HHcC
Confidence 8877
No 209
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.56 E-value=8.8 Score=30.17 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|+++.+.+...|-.-...++..|.++||+|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7899999999999999999999999999999886544
No 210
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.37 E-value=54 Score=28.40 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=62.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc---cccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS---KSLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
+.+-.|.+++..+.|-....+.+|-+.+.+|++|.++-.-... ...... ...+++.+.....++.- .. .+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l--~~l~~v~~~~~g~~~~~-~~---~~~ 93 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL--EFGGGVEFHVMGTGFTW-ET---QDR 93 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH--hcCCCcEEEECCCCCcc-cC---CCc
Confidence 4456899999999999999999999999999999987643221 111100 11237888877754322 11 111
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcc
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP 126 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~ 126 (468)
..... .....+....+.+.. ..+|+||.|....
T Consensus 94 ~e~~~----~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDIA----AAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred HHHHH----HHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11111 122233344444432 3589999997653
No 211
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.32 E-value=64 Score=27.03 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=55.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLV---TTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
-|.+++..+.|-....+.+|-+.+.+|++|.|+ -+.......... ...+++.+.....+..- .. .+.....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l--~~l~~v~~~~~g~~~~~-~~---~~~~~~~ 77 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKAL--ERLPNIEIHRMGRGFFW-TT---ENDEEDI 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHH--HhCCCcEEEECCCCCcc-CC---CChHHHH
Confidence 467888899999999999999999999999994 332111111100 01236777776654321 11 1111111
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP 126 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~ 126 (468)
. .....+....+.+. + ..+|+||.|....
T Consensus 78 ~----~a~~~~~~a~~~~~-~-~~~dLlVLDEi~~ 106 (159)
T cd00561 78 A----AAAEGWAFAKEAIA-S-GEYDLVILDEINY 106 (159)
T ss_pred H----HHHHHHHHHHHHHh-c-CCCCEEEEechHh
Confidence 1 11222333333333 2 3579999997653
No 212
>PRK05973 replicative DNA helicase; Provisional
Probab=70.28 E-value=12 Score=33.59 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
=+++..-|+.|-..-.+.++..-+++|+.|.|++.+...+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 4567778888999999999999888999999999887654443
No 213
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=70.08 E-value=14 Score=33.36 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCccccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHK-GLKVTLVTTYFISKSLH 57 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~ 57 (468)
=+++...++.|=-.-+++++..++.+ |+.|.|++.+.....+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 44566677889999999999988887 99999999887655443
No 214
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=69.47 E-value=33 Score=30.36 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=26.1
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 16 CLVLSYP-AQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 16 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|++.+.. .-|-..-.+.|++.|.++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4444333 45999999999999999999998754
No 215
>PRK14098 glycogen synthase; Provisional
Probab=69.18 E-value=7.8 Score=39.31 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 11 CRLVHCLVLSYP------AQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 11 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
++.|||++++.- +.|=-.-+-+|.++|+++||+|.++.+..
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 345999998732 22333456688999999999999999854
No 216
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.97 E-value=75 Score=27.36 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=37.0
Q ss_pred EEEEEc---CCC-ccCHHHH-HHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 15 HCLVLS---YPA-QGHINPL-LQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 15 ~il~~~---~~~-~GH~~p~-l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
||.++. +|+ +|=+--+ -.|+..|+++||+|++++......... ..-.|++...+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~----~~y~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE----FEYNGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC----cccCCeEEEEeC
Confidence 566543 343 4666654 478889999999999998766553333 224578888887
No 217
>PRK09620 hypothetical protein; Provisional
Probab=68.81 E-value=6.1 Score=35.41 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 012194 13 LVHCLVLSYPAQGHINPL------------LQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~ 51 (468)
.+||++.+.|++=.+.|. ..||++|.++|++|+++....
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467777766655444332 478999999999999997653
No 218
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=68.66 E-value=48 Score=29.12 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=60.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
=|++..+|+.|-..-.-.||++|.+++|+|.-++..+..-.. +++ .+... -..+...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~-------------------~DE-slpi~--ke~yres~ 60 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL-------------------WDE-SLPIL--KEVYRESF 60 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee-------------------ccc-ccchH--HHHHHHHH
Confidence 356677889999999999999999999999877753333222 111 11111 11222333
Q ss_pred HHhchHHHHHHHHHhcCCCCCccEEEeCCCcch------HHHHHHHcCCceEEEcccc
Q 012194 95 WQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPW------ALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 95 ~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~------~~~~A~~lgiP~i~~~~~~ 146 (468)
.... .+ ++....+ . -+||+|..-.. ....|..+..++.++..-.
T Consensus 61 ~ks~---~r-lldSalk---n-~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~ 110 (261)
T COG4088 61 LKSV---ER-LLDSALK---N-YLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT 110 (261)
T ss_pred HHHH---HH-HHHHHhc---c-eEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 2222 22 3333221 2 48999975421 4567889999988876544
No 219
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=68.62 E-value=91 Score=28.63 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.1
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYP--AQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
..|++.++.+ +-|--.-...||..|++.|++|.++=..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4565544443 4477777889999999999999988553
No 220
>PRK05595 replicative DNA helicase; Provisional
Probab=68.29 E-value=10 Score=37.85 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=32.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLD-HKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 56 (468)
|++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45677788899999999998876 569999999988654433
No 221
>PRK08006 replicative DNA helicase; Provisional
Probab=68.14 E-value=17 Score=36.66 Aligned_cols=127 Identities=11% Similarity=0.107 Sum_probs=69.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
|++..-|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+....-+...++....+..+.-. .+....+...+..+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~--~~e~~~~~~a~~~~ 304 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLD--DEDWARISGTMGIL 304 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCC--HHHHHHHHHHHHHH
Confidence 566778899999999999988874 699999999886544332110011234444444322110 00111112222222
Q ss_pred HH-----------hchHHHHHHHHHhcCCCCCccEEEeCCCcch-------------------HHHHHHHcCCceEEEcc
Q 012194 95 WQ-----------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPW-------------------ALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 95 ~~-----------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~lgiP~i~~~~ 144 (468)
.. .....+....+.+.......|+||+|++... ...+|..++||++.++.
T Consensus 305 ~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 384 (471)
T PRK08006 305 LEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQ 384 (471)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 11 0112333344444333224699999985311 22578889999999763
No 222
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.55 E-value=7.9 Score=36.10 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=42.5
Q ss_pred HHHhcccCcceeeecCCcchHHHHHH----cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHH
Q 012194 345 LEVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ 420 (468)
..+...+++ +|+=||=||++.|.. .++|++.+-.. .+| .+. +.+++++.+++.+
T Consensus 59 ~~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lG-FLt-----~~~~~~~~~~l~~ 116 (292)
T PRK01911 59 EELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLG-FLA-----TVSKEEIEETIDE 116 (292)
T ss_pred hhcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCC-ccc-----ccCHHHHHHHHHH
Confidence 344456788 999999999999987 37888876531 123 232 4578889999999
Q ss_pred HhcC
Q 012194 421 ILEG 424 (468)
Q Consensus 421 ll~~ 424 (468)
++++
T Consensus 117 i~~g 120 (292)
T PRK01911 117 LLNG 120 (292)
T ss_pred HHcC
Confidence 9887
No 223
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=67.43 E-value=10 Score=33.76 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.8
Q ss_pred EEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 17 LVLS-YPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 17 l~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.|.+ =||.|-..-.+.||.+|+++|-.|+++=.+.++...+
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 3433 4566999999999999999999999999888776554
No 224
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.18 E-value=27 Score=32.73 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHH----
Q 012194 295 VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALS---- 370 (468)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~---- 370 (468)
.+..+.+.+.+++.+..+.+.-... ..++.+ + ....+...+-..+++ +|+=||-||+++++.
T Consensus 19 ~e~~~~i~~~L~~~giev~v~~~~~--~~~~~~-------~---~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~ 84 (295)
T PRK01231 19 VETLRRLKDFLLDRGLEVILDEETA--EVLPGH-------G---LQTVSRKLLGEVCDL--VIVVGGDGSLLGAARALAR 84 (295)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCcc-------c---ccccchhhcccCCCE--EEEEeCcHHHHHHHHHhcC
Confidence 3456666667777777755432111 011110 0 112222333345778 999999999999975
Q ss_pred cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 371 LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 371 ~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.++|++.+... .+| .+. ..+.+++.+++.+++++
T Consensus 85 ~~~Pvlgin~G--------------~lG-Fl~-----~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 85 HNVPVLGINRG--------------RLG-FLT-----DIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCCEEEEeCC--------------ccc-ccc-----cCCHHHHHHHHHHHHcC
Confidence 36788877642 223 232 45788999999999876
No 225
>PRK06321 replicative DNA helicase; Provisional
Probab=67.13 E-value=19 Score=36.19 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=32.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 56 (468)
|++..-|+.|-..-.+.+|...+. .|..|.|++.+-....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778888999999999998874 59999999988655433
No 226
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.03 E-value=55 Score=29.78 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCC-eEE-----EeecchHHHhcccCcceeee-cCCcchHHHHHHcCC
Q 012194 301 LAWGLKATNQYFLWVVRESEQAKLPENFSDETSQK-GLV-----VNWCPQLEVLAHEAAGCFLT-HCGWNSTMEALSLGV 373 (468)
Q Consensus 301 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n-v~~-----~~~vpq~~lL~~~~~~~~I~-HgG~~s~~Eal~~Gv 373 (468)
+...+++.|.+++++......+....-+..++..- +.+ .++=|+.+.|+.++. +|. --..+-++||...|+
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgk 266 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSEAASTGK 266 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHHHhccCC
Confidence 33445667888887775542221111111112211 122 245699999999988 554 555788899999999
Q ss_pred ceee
Q 012194 374 PMVA 377 (468)
Q Consensus 374 P~l~ 377 (468)
|+.+
T Consensus 267 Pv~~ 270 (329)
T COG3660 267 PVFI 270 (329)
T ss_pred CeEE
Confidence 9955
No 227
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=66.49 E-value=39 Score=32.18 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CHHHHHHHHH-HHHhC-CCeEEEEEeCCccCCCCcchhh--hccCCeEEEeecchH---HHhcccCcceeeecCCc----
Q 012194 294 KVEEMEELAW-GLKAT-NQYFLWVVRESEQAKLPENFSD--ETSQKGLVVNWCPQL---EVLAHEAAGCFLTHCGW---- 362 (468)
Q Consensus 294 ~~~~~~~~~~-a~~~~-~~~~i~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~---~lL~~~~~~~~I~HgG~---- 362 (468)
..+++..++- .+.+. +.+|++...++....+. +..| .+.++|.+.+-+|++ ++|.+-++ |++-.=.
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk~i~le-e~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLE-EMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcccchHH-HHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 3455544444 44544 56777655444222221 1122 266999999999976 88999999 8876432
Q ss_pred chHHHHHHcCCceeec
Q 012194 363 NSTMEALSLGVPMVAM 378 (468)
Q Consensus 363 ~s~~Eal~~GvP~l~~ 378 (468)
-++.||..+|.|++..
T Consensus 286 ~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 3578999999999874
No 228
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.48 E-value=76 Score=27.01 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=56.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CCcc---ccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHH
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT---TYFI---SKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIE 88 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~~~---~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~ 88 (468)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++- +... ...+++ .++.|.....++.- .. .+..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~------~~~~~~~~g~g~~~-~~---~~~~ 76 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP------HGVEFQVMGTGFTW-ET---QNRE 76 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh------cCcEEEECCCCCee-cC---CCcH
Confidence 5778888999999999999999999999997652 2211 112221 16778877755432 11 1111
Q ss_pred HHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc
Q 012194 89 AYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL 125 (468)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~ 125 (468)
.... .....+....+.+.. ..+|+||.|...
T Consensus 77 ~~~~----~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 77 ADTA----IAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred HHHH----HHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 1111 122333344444432 358999999765
No 229
>PRK06904 replicative DNA helicase; Validated
Probab=66.27 E-value=17 Score=36.59 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 56 (468)
|++..-|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778889999999999998875 59999999988665433
No 230
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.19 E-value=4.4 Score=33.89 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=27.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
||.++..|.+|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 677888887775 78999999999999999874
No 231
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=66.08 E-value=33 Score=31.16 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
++|+++...+-|+ .|++.|.++|+.|.+-+......
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~ 38 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG 38 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC
Confidence 6788888777774 68999999999888755544443
No 232
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=65.92 E-value=35 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.1
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012194 20 SYPAQGHINPLLQFAKRLDHKGLKVTLV 47 (468)
Q Consensus 20 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 47 (468)
+.++-|--.-.+.|++.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3455688899999999999999999885
No 233
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=65.69 E-value=1.1e+02 Score=28.04 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=57.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC---CCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHH
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHK---GLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAY 90 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~ 90 (468)
||||+.---+. |---+.+|++.|... |++|+++.+...+.-.-.+. .....++...+.++ .+....++..-
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai-T~~~pl~~~~~~~~----~yav~GTPaDC 74 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI-SYTHPMMIAELGPR----RFAAEGSPADC 74 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc-cCCCCeEEEEeCCC----eEEEcCchHHH
Confidence 45555432221 223356677777663 47999988876554333210 11224555544321 12223333321
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEEeCC----------Cc---chHHHHHHHcCCceEEEcc
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDS----------FL---PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~----------~~---~~~~~~A~~lgiP~i~~~~ 144 (468)
+.-.+..+... .+||+||... ++ ..|+.-|..+|||.|.+|.
T Consensus 75 -----------V~lal~~~~~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 75 -----------VLAALYDVMKD-APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred -----------HHHHHHHhcCC-CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 12222233221 2469999643 33 3356667889999999874
No 234
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.54 E-value=76 Score=26.56 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred EEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCC--------CCCCCCCccccH
Q 012194 17 LVLSYPAQGHINPLL-QFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDG--------YDQGGSAQAESI 87 (468)
Q Consensus 17 l~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~--------~~~~~~~~~~~~ 87 (468)
..+.+...+.+..++ .+|.+|.++|++|.=+........-. .........++.+ +-+......-+.
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~-----~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~ 76 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG-----GRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDP 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC-----CccceEEEECCCCCEEEEeeccCCCCcccccCH
Confidence 344555667777755 78999999999998555432111111 1113444444432 212111111122
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcc---------hHHHHHHHcCCceEEEcccc
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP---------WALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~---------~~~~~A~~lgiP~i~~~~~~ 146 (468)
... ......+...+.+ ++|++|.+-|.- .....|-..|||+++..+..
T Consensus 77 ~~L--------a~A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 77 GAL--------AEASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHH--------HHHHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 221 1122233333332 359999998741 13455778899999865543
No 235
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=65.31 E-value=4.9 Score=40.03 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=42.5
Q ss_pred chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHH
Q 012194 363 NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNA 434 (468)
Q Consensus 363 ~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 434 (468)
-++.||+++|+|+++.= +-.-+..++.. --|...++. .-....+.+++.++..|+ +++.++
T Consensus 380 iv~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp~---~e~~~~~a~~~~kl~~~p---~l~~~~ 440 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDPG---QEAVAELADALLKLRRDP---ELWARM 440 (495)
T ss_pred ceeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCCc---hHHHHHHHHHHHHHhcCH---HHHHHH
Confidence 37899999999999864 33344455555 567777753 323447999999999997 554443
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.30 E-value=21 Score=28.78 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
++.||++...++.+|-..--=++..|...|++|........
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s 41 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQT 41 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 35799999999999999998889999999999998776433
No 237
>PRK11519 tyrosine kinase; Provisional
Probab=65.28 E-value=1.3e+02 Score=32.22 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=66.0
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCC-C----------------------CCCCe
Q 012194 13 LVHCLVLSY--PAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSS-S----------------------SSASI 67 (468)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~-~----------------------~~~~i 67 (468)
+.|+++++. ++-|--.-...||..|+..|++|.++-.+-....+.+... . ..+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 346665544 5668888899999999999999999976544332221100 0 01122
Q ss_pred EEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc----chHHHHHHHcCCceEEE
Q 012194 68 ALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL----PWALDVAKKFGLVGAAF 142 (468)
Q Consensus 68 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~----~~~~~~A~~lgiP~i~~ 142 (468)
.+.+.. . ...+..+.+ ....+.++++.+... +|+||.|.-- .-+..++...+...+++
T Consensus 605 ~~lp~g--~------~~~~~~ell------~s~~~~~ll~~l~~~---yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vv 666 (719)
T PRK11519 605 DLIPRG--Q------VPPNPSELL------MSERFAELVNWASKN---YDLVLIDTPPILAVTDAAIVGRHVGTTLMVA 666 (719)
T ss_pred EEEeCC--C------CCCCHHHHh------hHHHHHHHHHHHHhc---CCEEEEeCCCcccchHHHHHHHHCCeEEEEE
Confidence 222211 1 011222221 234567777777643 8999999643 22667788888776654
No 238
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=65.27 E-value=56 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.4
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeeccc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMPQ 380 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P~ 380 (468)
++.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 59 ~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3455 89997754 67888999999999853
No 239
>PRK08760 replicative DNA helicase; Provisional
Probab=65.25 E-value=15 Score=37.05 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKS 55 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 55 (468)
|++..-|+.|-..-.+.+|...+. .|+.|.|++.+-..+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 566778889999999999998875 5999999998765543
No 240
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=65.05 E-value=26 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=19.6
Q ss_pred CccEEEeCCCc---chHHHHHHHcCCceEE
Q 012194 115 PVDCIVYDSFL---PWALDVAKKFGLVGAA 141 (468)
Q Consensus 115 p~DlVI~D~~~---~~~~~~A~~lgiP~i~ 141 (468)
.+|+||+.+-. .+..+..+..|||++-
T Consensus 62 ~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 62 KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 47999998754 4466777888999874
No 241
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.16 E-value=8.5 Score=33.10 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=34.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+||++...|+.|=+. ...+.++|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 478877767666555 7999999999999999999888776665
No 242
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.09 E-value=9 Score=35.99 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=41.3
Q ss_pred HHhcccCcceeeecCCcchHHHHHHc----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 346 EVLAHEAAGCFLTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 346 ~lL~~~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
.+...+++ +|+=||=||++.|.+. ++|++.+-.. .+|. +. +.+.+++.+++.++
T Consensus 64 ~~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF-Lt-----~~~~~~~~~~l~~l 121 (305)
T PRK02649 64 GFDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF-LT-----EAYLNQLDEAIDQV 121 (305)
T ss_pred hcccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc-cc-----cCCHHHHHHHHHHH
Confidence 33446778 9999999999999774 7898877421 2232 22 45678899999998
Q ss_pred hcC
Q 012194 422 LEG 424 (468)
Q Consensus 422 l~~ 424 (468)
+++
T Consensus 122 ~~g 124 (305)
T PRK02649 122 LAG 124 (305)
T ss_pred HcC
Confidence 877
No 243
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.58 E-value=57 Score=24.06 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHHHHHHh
Q 012194 30 LLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCELVEKM 109 (468)
Q Consensus 30 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 109 (468)
++.+++.|.+.|++| ++|.. -.+.+++. |+.+..+...... + . ..+++.+
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~------Gi~~~~~~~ki~~-~-----~----------------~~i~~~i 51 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREA------GLPVKTLHPKVHG-G-----I----------------LAILDLI 51 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHC------CCcceeccCCCCC-C-----C----------------HHHHHHh
Confidence 468899999999999 45543 44555533 6655322111111 0 0 0233444
Q ss_pred cCCCCCccEEEeCCC---------cchHHHHHHHcCCceE
Q 012194 110 NGSVVPVDCIVYDSF---------LPWALDVAKKFGLVGA 140 (468)
Q Consensus 110 ~~~~~p~DlVI~D~~---------~~~~~~~A~~lgiP~i 140 (468)
.. .++|+||.... .......|...+||++
T Consensus 52 ~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 52 KN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred cC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 33 46899998542 1234567888999986
No 244
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=63.40 E-value=35 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred ccEEE-eCCCc-chHHHHHHHcCCceEEEcccc
Q 012194 116 VDCIV-YDSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 116 ~DlVI-~D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
||+++ +|+.. .-|..=|.++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 47765 67665 447888999999999976544
No 245
>PLN02470 acetolactate synthase
Probab=63.33 E-value=35 Score=35.58 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=50.0
Q ss_pred EecCcCCCC--HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEee--------cchH--HHhcccCc
Q 012194 286 SFGSYAPLK--VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNW--------CPQL--EVLAHEAA 353 (468)
Q Consensus 286 s~Gs~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~--------vpq~--~lL~~~~~ 353 (468)
+|||....+ ....+.+++.|++.|.+.|+-+.+.....+-+.+.+ .++++++.- +=.. .+-.+..+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 455555322 233566777788888877777765533222112110 112333321 1111 12223444
Q ss_pred ceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 354 GCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 354 ~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
+++|.|-| .+.+|...++|+|++.
T Consensus 80 --~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 80 --CIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred --EEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 99998865 7889999999999984
No 246
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=63.17 E-value=9.8 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
+..|||+++..|+.| ..+|..|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 345899999888777 356788999999999998754
No 247
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=62.95 E-value=26 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.7
Q ss_pred CccEEE-eCCCc-chHHHHHHHcCCceEEEcccc
Q 012194 115 PVDCIV-YDSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 115 p~DlVI-~D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
.||+|| .|... ..+..=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 358877 45544 558888999999999976544
No 248
>PRK12342 hypothetical protein; Provisional
Probab=62.79 E-value=6.2 Score=35.90 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=22.9
Q ss_pred ccEEEeCCCc------chHHHHHHHcCCceEEEcc
Q 012194 116 VDCIVYDSFL------PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 116 ~DlVI~D~~~------~~~~~~A~~lgiP~i~~~~ 144 (468)
||+|++...+ ..+..+|+.+|+|++.+..
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 7999976543 3389999999999998653
No 249
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.09 E-value=42 Score=33.66 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=59.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCc-cccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 15 HCLVLSY-PAQGHINPLLQFAKRLDHKGLKVTLVTTYF-ISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 15 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
+|++... ++-|-..-...|++.|+++|++|..+-+.. +.+.. ++..-.+.+...++..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~------------~~~~~~g~~~~~ld~~-------- 64 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA------------YHTAATGRPSRNLDSW-------- 64 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH------------HHHHHhCCCcccCCce--------
Confidence 4555433 344899999999999999999998775521 11000 0000000111011100
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCCC------------cchHHHHHHHcCCceEEEcccc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDSF------------LPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~------------~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
......+.+.+..+.+ ..|++|++.. ......+|+.++.|++.+....
T Consensus 65 ---~~~~~~v~~~~~~~~~---~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 ---MMGEELVRALFARAAQ---GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ---eCCHHHHHHHHHHhcc---cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0012345555555543 2699997443 1236789999999999998654
No 250
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.73 E-value=13 Score=29.52 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
||++.+.++-.|-....-++.-|...|++|.+.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 6899999999999999999999999999999999765433
No 251
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=61.70 E-value=41 Score=30.68 Aligned_cols=38 Identities=26% Similarity=0.159 Sum_probs=31.4
Q ss_pred EEEE-EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 15 HCLV-LSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
||++ ..-|+-|......++|..++++|++|.++..+..
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444 4566779999999999999999999999987654
No 252
>PRK08840 replicative DNA helicase; Provisional
Probab=61.46 E-value=24 Score=35.42 Aligned_cols=127 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
|++..-|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+....-+...++....+..+.-. -+....+...+..+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~--~~e~~~~~~a~~~l 297 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLD--DEDWARISSTMGIL 297 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCC--HHHHHHHHHHHHHH
Confidence 566778889999999999999874 599999999886554332110011234444444322100 00111112222222
Q ss_pred HH-----------hchHHHHHHHHHhcCCCCCccEEEeCCCcch-------------------HHHHHHHcCCceEEEcc
Q 012194 95 WQ-----------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPW-------------------ALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 95 ~~-----------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~lgiP~i~~~~ 144 (468)
.. .....++.....+.......|+||+|++... ...+|..++||++.++.
T Consensus 298 ~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 377 (464)
T PRK08840 298 MEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 11 0112344444444333223699999985411 22578889999998763
No 253
>PRK05920 aromatic acid decarboxylase; Validated
Probab=60.97 E-value=11 Score=33.07 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.+||++.-.|+.+ .+=.+.+.++|.+.||+|+++.+......+.
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 3678776555444 3688999999999999999999988776664
No 254
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=60.52 E-value=12 Score=32.19 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
||++--.|+.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6887777777777777899999999999999988876554
No 255
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.06 E-value=16 Score=34.10 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=41.4
Q ss_pred HHHhcccCcceeeecCCcchHHHHHH----cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHH
Q 012194 345 LEVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISE 420 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ 420 (468)
..+...+++ +|+=||=||++.|.. +++|++.+-.. .+|. +. .++++++.+++.+
T Consensus 58 ~~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGF-l~-----~~~~~~~~~~l~~ 115 (292)
T PRK03378 58 AEIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGF-LT-----DLDPDNALQQLSD 115 (292)
T ss_pred hhcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCc-cc-----ccCHHHHHHHHHH
Confidence 344456788 999999999999985 36787766531 1232 22 4567889999999
Q ss_pred HhcC
Q 012194 421 ILEG 424 (468)
Q Consensus 421 ll~~ 424 (468)
++++
T Consensus 116 i~~g 119 (292)
T PRK03378 116 VLEG 119 (292)
T ss_pred HHcC
Confidence 9876
No 256
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=58.29 E-value=47 Score=28.66 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred CcE-EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc---ccC--CCCCCCCeEEEEcCCC
Q 012194 13 LVH-CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL---HRD--SSSSSASIALEAISDG 75 (468)
Q Consensus 13 ~~~-il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~---~~~--~~~~~~~i~f~~~~~~ 75 (468)
+.| |+|++.++.-|-.-...+++.|++.|-+|.+++.....+.. +.. ......+=+|+.+|.+
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 357 56777777777777889999999999999998876543322 211 1112335678888753
No 257
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=58.11 E-value=22 Score=30.53 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 28 NPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 28 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
.-.+.+|+.|.+.|+++. +++.-.+.+++. |+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~------GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA------GIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc------CCeEEEhh
Confidence 447899999999999994 444566666643 77777775
No 258
>PHA02542 41 41 helicase; Provisional
Probab=58.09 E-value=16 Score=36.70 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
|++..-|+.|-..-.+.+|...++.|+.|.|++-+-..+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 56677888999999999999998889999999987665433
No 259
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.09 E-value=82 Score=31.39 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
...|+.++.. -.-.+.+++.|.+.|-+|..+.+..
T Consensus 302 ~gkrv~i~g~-----~~~~~~la~~L~elGm~v~~~~~~~ 336 (435)
T cd01974 302 HGKKFALYGD-----PDFLIGLTSFLLELGMEPVHVLTGN 336 (435)
T ss_pred CCCEEEEEcC-----hHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 4567877653 3347888999999999997766543
No 260
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.88 E-value=14 Score=34.72 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHhcccCcceeeecCCcchHHHHHHc----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 346 EVLAHEAAGCFLTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 346 ~lL~~~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
.+...+++ +|+=||=||++.|... ++|++.+... .+|... +..++++.+++.++
T Consensus 68 ~~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i 125 (306)
T PRK03372 68 DAADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERV 125 (306)
T ss_pred hcccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHH
Confidence 34456788 9999999999999764 8898887642 234332 45678888999998
Q ss_pred hcC
Q 012194 422 LEG 424 (468)
Q Consensus 422 l~~ 424 (468)
+++
T Consensus 126 ~~g 128 (306)
T PRK03372 126 VDR 128 (306)
T ss_pred HcC
Confidence 877
No 261
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.74 E-value=1.4e+02 Score=26.74 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhcCCCCCccEEEeCCCcch---HHHHHHHcCCceEE
Q 012194 98 GPRSLCELVEKMNGSVVPVDCIVYDSFLPW---ALDVAKKFGLVGAA 141 (468)
Q Consensus 98 ~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~---~~~~A~~lgiP~i~ 141 (468)
....+..+++++.+ .++.+.|..+.. +..+|...|+|++.
T Consensus 136 n~~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 136 NEDAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred cHHHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 44567788888764 389999987633 68889999999986
No 262
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.59 E-value=16 Score=33.71 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=40.9
Q ss_pred chHHHhcccCcceeeecCCcchHHHHHH----cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHH
Q 012194 343 PQLEVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCI 418 (468)
Q Consensus 343 pq~~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i 418 (468)
++.++...+++ +|+=||=||++.|.+ .++|++.+-.. .+|... +.+++++.+.+
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l 92 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQL 92 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHH
Confidence 34555567788 999999999998865 36888776421 223222 34677888888
Q ss_pred HHHhc
Q 012194 419 SEILE 423 (468)
Q Consensus 419 ~~ll~ 423 (468)
.++++
T Consensus 93 ~~~~~ 97 (272)
T PRK02231 93 EACLE 97 (272)
T ss_pred HHHHh
Confidence 88887
No 263
>PRK04946 hypothetical protein; Provisional
Probab=57.47 E-value=3.6 Score=35.13 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchH-HHhcccCcceeeecCCcchH
Q 012194 297 EMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQL-EVLAHEAAGCFLTHCGWNST 365 (468)
Q Consensus 297 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~-~lL~~~~~~~~I~HgG~~s~ 365 (468)
.+..+++.+...+.+.+.++.+.+...+... |..|+.|. .|++-+.+ =-.|||.|.+
T Consensus 111 ~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~----------V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 111 ELGALIAACRKEHVFCACVMHGHGKHILKQQ----------TPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCHhHHHHH----------HHHHHcCCchhheeecc--CcccCCceEE
Confidence 3444555566678887777766544323222 55788765 88888888 8899999976
No 264
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=57.14 E-value=61 Score=33.59 Aligned_cols=80 Identities=13% Similarity=0.038 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc----------hHHHhcccCcceeeecCCcc--
Q 012194 296 EEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP----------QLEVLAHEAAGCFLTHCGWN-- 363 (468)
Q Consensus 296 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp----------q~~lL~~~~~~~~I~HgG~~-- 363 (468)
..-+.+++.|++.|.+.|+-+.+.....+-+.+.+ .++++++.-.. +..+-.++.+ +++|.|-|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GpG~~ 89 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSGPGAT 89 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCCCcHH
Confidence 34666777777888777776655433222122110 01233332111 1122234555 88888855
Q ss_pred ----hHHHHHHcCCceeecc
Q 012194 364 ----STMEALSLGVPMVAMP 379 (468)
Q Consensus 364 ----s~~Eal~~GvP~l~~P 379 (468)
.+.||...++|+|++.
T Consensus 90 N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 90 NLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHhcCCCEEEEe
Confidence 7889999999999874
No 265
>PRK07773 replicative DNA helicase; Validated
Probab=56.74 E-value=27 Score=38.39 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=70.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCc--cccHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHK-GLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQ--AESIEAYLE 92 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~--~~~~~~~~~ 92 (468)
|++..-|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...+.+...++....+..+ .+.. ...+...+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g----~l~~~~~~~~~~a~~ 295 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSG----RMSDDDWTRLARAMG 295 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHH
Confidence 6677788999999999999988754 89999999876655443221111223333333211 1110 001111111
Q ss_pred HHHH----------hchHHHHHHHHHhcCCCCCccEEEeCCCcch-------------------HHHHHHHcCCceEEEc
Q 012194 93 KFWQ----------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPW-------------------ALDVAKKFGLVGAAFL 143 (468)
Q Consensus 93 ~~~~----------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~lgiP~i~~~ 143 (468)
.+.. .....++..+..+.+. .+.|+||.|++... ...+|..++||++.++
T Consensus 296 ~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~ls 374 (886)
T PRK07773 296 EISEAPIFIDDTPNLTVMEIRAKARRLRQE-ANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALS 374 (886)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEec
Confidence 1111 0112233333344333 34699999986521 2357889999999987
Q ss_pred ccc
Q 012194 144 TQS 146 (468)
Q Consensus 144 ~~~ 146 (468)
.-+
T Consensus 375 QLn 377 (886)
T PRK07773 375 QLS 377 (886)
T ss_pred ccC
Confidence 543
No 266
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=56.29 E-value=72 Score=24.84 Aligned_cols=94 Identities=19% Similarity=0.151 Sum_probs=53.4
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHh
Q 012194 18 VLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQI 97 (468)
Q Consensus 18 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (468)
|++.... +-.-++.+++.|.+.|++|. +| +.-.+.+.+. |+.+..+...... ....
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-aT-~gTa~~L~~~------gi~~~~v~~~~~~---~~~~------------ 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-AT-EGTADFLLEN------GIPVTPVAWPSEE---PQND------------ 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-Ec-cHHHHHHHHc------CCCceEeeeccCC---CCCC------------
Confidence 4444444 55668899999999999983 44 4444444432 5655555321110 0000
Q ss_pred chHHHHHHHHHhcCCCCCccEEEeCCC---------cchHHHHHHHcCCceEE
Q 012194 98 GPRSLCELVEKMNGSVVPVDCIVYDSF---------LPWALDVAKKFGLVGAA 141 (468)
Q Consensus 98 ~~~~~~~~l~~l~~~~~p~DlVI~D~~---------~~~~~~~A~~lgiP~i~ 141 (468)
.+.+.+++.+ ..+|+||.-.. .......|-.+|||++.
T Consensus 60 -~~~i~~~i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -KPSLRELLAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -chhHHHHHHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 0123333333 35799998432 13356778999999974
No 267
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=56.27 E-value=45 Score=33.16 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
+.||||++..|++-| +|++.|++-++-..+++.+.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 358999999998876 7899999888655555544443
No 268
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.98 E-value=16 Score=33.75 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred ccCcceeeecCCcchHHHHHH---cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALS---LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~---~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+++ +|.-||-||+++++. .++|++.++... +| -+. .++++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lG-Fl~-----~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LG-FLT-----EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CC-ccc-----cCCHHHHHHHHHHHHcC
Confidence 5677 999999999999984 356888887421 11 222 44677888888888876
No 269
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=55.97 E-value=30 Score=34.48 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSL 56 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 56 (468)
=+++...|+.|-..-.+.++..++. .|+.|.|++.+...+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3566777888999999999998875 59999999998765544
No 270
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=55.74 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=28.1
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 15 HCLVLS-YPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 15 ~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.|++.+ -||-|-..-..+||..|++.|++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 344443 456699999999999999999999877543
No 271
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.44 E-value=1.2e+02 Score=26.52 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=77.9
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhh-ccCCeEEEeecchHHHhcccCcceee
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDE-TSQKGLVVNWCPQLEVLAHEAAGCFL 357 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~~lL~~~~~~~~I 357 (468)
.++++.|..|.++ ..-+..|.+.|..+.++-+.. .+.+.+- -..++....--.+...|..+++ +|
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-----~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l--Vi 74 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-----ESELTLLAEQGGITWLARCFDADILEGAFL--VI 74 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-----CHHHHHHHHcCCEEEEeCCCCHHHhCCcEE--EE
Confidence 3457777766654 233456667888776554321 1222111 1135555433334556788888 99
Q ss_pred ecCCcchHHHH-----HHcCCceee--cccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHH
Q 012194 358 THCGWNSTMEA-----LSLGVPMVA--MPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEI 430 (468)
Q Consensus 358 ~HgG~~s~~Ea-----l~~GvP~l~--~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 430 (468)
..-|...+.+. -..|+|+-+ -|-..| +..-..+.+- ++-+.+........-+..|++.|.+++..+. ..+
T Consensus 75 ~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~-~~~ 151 (205)
T TIGR01470 75 AATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSL-GDL 151 (205)
T ss_pred ECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhH-HHH
Confidence 88887755443 346888833 232222 2222333333 3444444331112234667777777775421 356
Q ss_pred HHHHHHHHHHHHHH
Q 012194 431 RQNAGKWSNFAKEA 444 (468)
Q Consensus 431 ~~~a~~~~~~~~~~ 444 (468)
-+...+++..+++.
T Consensus 152 ~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 152 ATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666666653
No 272
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=54.70 E-value=88 Score=26.17 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=54.6
Q ss_pred hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEee-cchHH
Q 012194 268 ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNW-CPQLE 346 (468)
Q Consensus 268 ~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~-vpq~~ 346 (468)
.++-++|...+ ..+++-|. .-......++..+.+-+++-+++.... ....+ .+.....++ .+...
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~-----~GlM~a~a~ga~~~gg~viGVlp~~l~--~~~~~----~~~~i~~~~~~~Rk~ 86 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGR-----TGVMEAVSKGAREAGGLVVGILPDEDF--AGNPY----LTIKVKTGMNFARNF 86 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCc-----hhHHHHHHHHHHHCCCeEEEECChhhc--cCCCC----ceEEEECCCcchHHH
Confidence 44556776643 45556332 235566666666677777655543211 11111 111222343 34555
Q ss_pred HhcccCcceeeecCCcchHHH---HHHcCCceeeccc
Q 012194 347 VLAHEAAGCFLTHCGWNSTME---ALSLGVPMVAMPQ 380 (468)
Q Consensus 347 lL~~~~~~~~I~HgG~~s~~E---al~~GvP~l~~P~ 380 (468)
++-..+-..++--||.||+.| ++.+++|+++++.
T Consensus 87 ~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 87 ILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 555433334566788888655 5889999998875
No 273
>PRK05636 replicative DNA helicase; Provisional
Probab=54.70 E-value=27 Score=35.46 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLD-HKGLKVTLVTTYFISKS 55 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 55 (468)
|++..-|+.|--.-.+.+|...+ +.|..|.|++.+-....
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 56677888899988999998876 46899999988765443
No 274
>PRK09165 replicative DNA helicase; Provisional
Probab=54.63 E-value=41 Score=34.22 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHK---------------GLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~~ 56 (468)
|++..-|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667788889999998888888653 8899999988765544
No 275
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=54.53 E-value=39 Score=32.32 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGL-KVTLVTT 49 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~ 49 (468)
-+.+||+++..|+-| -.+|+.|++.|+ +++++=.
T Consensus 22 L~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 22 IREKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 356799999999877 678999999998 6666543
No 276
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=54.42 E-value=15 Score=31.56 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCccccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 57 (468)
+||++.-.|+-| .+=...+.++|.+ .||+|.++.++...+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 478776666666 6668999999999 599999999988887776
No 277
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.29 E-value=24 Score=28.60 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=36.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
.+|++-+.++.+|-.----++..|.+.|++|.........+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4899999999999999988999999999999998876554433
No 278
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=53.99 E-value=23 Score=33.07 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=33.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|||.++.=|+-|-..-...||..|+++|++|.++=.+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 68999999999999999999999999999998876543
No 279
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=53.91 E-value=10 Score=30.42 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcccccccc
Q 012194 25 GHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHR 58 (468)
Q Consensus 25 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 58 (468)
-.+.-.+-++..|.++||+|++++++.....++-
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 4445578899999999999999999999888883
No 280
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.85 E-value=11 Score=33.00 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc-cccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI-SKSLHR 58 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~~~~ 58 (468)
+++-.--+.|--.-.++++.-+...||+|++++++.- ++.+.+
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHH
Confidence 3444555678888999999999999999999999864 344443
No 281
>PRK05748 replicative DNA helicase; Provisional
Probab=53.84 E-value=41 Score=33.69 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSL 56 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 56 (468)
=|++...|+.|-..-.+.++...+. .|+.|.|++.+-..+.+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 4667778899999999999998874 59999999988665544
No 282
>PRK07004 replicative DNA helicase; Provisional
Probab=53.49 E-value=36 Score=34.20 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDH-KGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 56 (468)
|++...|+.|-..-.+.+|..++. .|+.|.|++.+-..+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 566778889999999999998864 69999999988665443
No 283
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.12 E-value=26 Score=32.11 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=38.4
Q ss_pred ccCcceeeecCCcchHHHHHHc-----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALSL-----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~-----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+++ +|+=||=||++.|+.. .+|++.+-..+ .+|. +. +.+.+++.+++.+++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGF-L~-----~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGF-YC-----DFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeE-cc-----cCCHHHHHHHHHHHHcC
Confidence 3577 9999999999999874 56766554310 2232 22 45778999999998876
No 284
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=53.04 E-value=13 Score=31.86 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
||++...|+-|-.. ...+.++|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 45555555555544 4889999999999999999988887765
No 285
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=53.00 E-value=25 Score=35.21 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 28 NPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 28 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
.-.+.+++.|.+.|+++. ++..-.+.+++. |+.+..+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~------GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEA------GVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHC------CCeEEEee
Confidence 347789999999999993 445566666643 78777775
No 286
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=52.94 E-value=34 Score=34.47 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 27 INPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 27 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
=.-++.+|+.|.+.|+++. ++..-.+.+++. |+.+..+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~------GI~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL--STGGTAKLLAEA------GIPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC------CCeeEEee
Confidence 3447899999999999993 445556666643 77777665
No 287
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.73 E-value=19 Score=33.83 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
|||+++..|+.| ..+|..|++.||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 689999888776 457888999999999998743333333
No 288
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.63 E-value=27 Score=32.23 Aligned_cols=53 Identities=13% Similarity=0.330 Sum_probs=38.4
Q ss_pred ccCcceeeecCCcchHHHHHH-cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALS-LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~-~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+++ +|+=||-||++.|.. +.+|++.+-.. .+|. +. +.+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGF-L~-----~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGF-LT-----EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCcc-Cc-----ccCHHHHHHHHHHHHcC
Confidence 5777 999999999999988 45677655321 2232 22 45778999999999887
No 289
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=52.56 E-value=1.9e+02 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.9
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 15 HCLVLSYPA-QGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 15 ~il~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
.|++.+..+ .|-..-.+.|++.|.++|++|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 455554444 48999999999999999999998753
No 290
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=52.12 E-value=16 Score=31.30 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+..+++|+..++.|--.=..++++++.++|+.|.|++.+...+.++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 3568899998899988889999999999999999999887777666
No 291
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=52.04 E-value=25 Score=30.35 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=48.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeC-CccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTT-YFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLE 92 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~-~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~ 92 (468)
++-+=..+-|-+.....|+++|.++ |++|.+-++ +...+.+.+. ..+.+....+| +|.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~---~~~~v~~~~~P--~D~-------------- 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL---LPDRVDVQYLP--LDF-------------- 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE-----SS--------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh---CCCCeEEEEeC--ccC--------------
Confidence 3333345579999999999999987 898888665 3444444422 11133333344 221
Q ss_pred HHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEc
Q 012194 93 KFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFL 143 (468)
Q Consensus 93 ~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~ 143 (468)
...++..++.+. | |++|.-..- +..+..|++.|||.+.+.
T Consensus 84 ------~~~~~rfl~~~~----P-~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 84 ------PWAVRRFLDHWR----P-DLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------HHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------HHHHHHHHHHhC----C-CEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 112344555553 4 877755544 446778889999999874
No 292
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=51.99 E-value=25 Score=35.20 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=41.1
Q ss_pred HhcccCcceeeecCCcchHHHHHHc----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHh
Q 012194 347 VLAHEAAGCFLTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEIL 422 (468)
Q Consensus 347 lL~~~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll 422 (468)
+...+++ +|+=||=||++.|... ++|++.+- .. .+|. +. .++.+++.+++.+++
T Consensus 259 l~~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G------~LGF-Lt-----~i~~~e~~~~Le~il 316 (508)
T PLN02935 259 LHTKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------MG------SLGF-MT-----PFHSEQYRDCLDAIL 316 (508)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------CC------Ccce-ec-----ccCHHHHHHHHHHHH
Confidence 3356788 9999999999999774 56777653 11 2343 33 567889999999998
Q ss_pred cC
Q 012194 423 EG 424 (468)
Q Consensus 423 ~~ 424 (468)
++
T Consensus 317 ~G 318 (508)
T PLN02935 317 KG 318 (508)
T ss_pred cC
Confidence 87
No 293
>PRK00784 cobyric acid synthase; Provisional
Probab=51.83 E-value=68 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 16 CLVLSYP-AQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 16 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
|++.... .-|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 5554333 349999999999999999999987644
No 294
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=51.64 E-value=18 Score=30.94 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
||++...|+. ...-...+.++|.++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5666555544 44456699999999999999999887766655
No 295
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.51 E-value=18 Score=33.87 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
|||+++..|+.| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888887776 5678889999999999986
No 296
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=50.75 E-value=35 Score=28.50 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVV 316 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 316 (468)
.+|+|+||....+...++..+.++.+.+.--|+..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999998777889999999988875333343
No 297
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.71 E-value=30 Score=31.60 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=37.9
Q ss_pred ccCcceeeecCCcchHHHHHH-cCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALS-LGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~-~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+++ +|+=||=||++.|+. +++|++.+-.. .+|. +. .++.+++.+++.+++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGf-l~-----~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGF-LS-----SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcc-cc-----ccCHHHHHHHHHHHHcC
Confidence 4577 999999999999987 57787766421 1132 22 45678888888888876
No 298
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=50.13 E-value=83 Score=30.03 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 13 LVHCLVLSYPAQG-----HINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 13 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
+..|+|.+..+.| -..-+..|++.|.++|.+|.++.++.-.+.+++. ... ... ...
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i----~~~---------~~~-~~~----- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEI----AKG---------LPN-AVI----- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHH----HHh---------cCC-ccc-----
Confidence 3567777763442 2346889999999999999999887444444322 000 000 000
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccc
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
+. ....+.++..-+.. -|++|+.- .+...+|..+|.|+|.++..+
T Consensus 236 ------l~--~k~sL~e~~~li~~----a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 ------LA--GKTSLEELAALIAG----ADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ------cC--CCCCHHHHHHHHhc----CCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 00 11123333333322 38888653 457899999999999987544
No 299
>PLN02929 NADH kinase
Probab=49.95 E-value=26 Score=32.80 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=43.8
Q ss_pred cccCcceeeecCCcchHHHHHH---cCCceeeccccc------chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHH
Q 012194 349 AHEAAGCFLTHCGWNSTMEALS---LGVPMVAMPQWS------DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCIS 419 (468)
Q Consensus 349 ~~~~~~~~I~HgG~~s~~Eal~---~GvP~l~~P~~~------DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~ 419 (468)
..+++ +|+-||=||++.|.+ .++|++.+=... .++.|.-. +.. -+|. |. ..+.+++.+++.
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGf-L~-----~~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGH-LC-----AATAEDFEQVLD 132 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccc-cc-----cCCHHHHHHHHH
Confidence 45677 999999999999855 478988876532 12222221 111 2343 22 456889999999
Q ss_pred HHhcC
Q 012194 420 EILEG 424 (468)
Q Consensus 420 ~ll~~ 424 (468)
+++++
T Consensus 133 ~il~g 137 (301)
T PLN02929 133 DVLFG 137 (301)
T ss_pred HHHcC
Confidence 99987
No 300
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.84 E-value=1.4e+02 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
.--|+|+..++-|-..-+..||..|..+|++|.+++.+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34556777778899999999999999999999999987765
No 301
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=49.72 E-value=78 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 20 SYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 20 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
+-|+-|--.-...||..|+++|++|.++=.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34566888999999999999999999987644
No 302
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=49.64 E-value=1e+02 Score=30.65 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLD-HKGLKVTLVTTYFISKS 55 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 55 (468)
.-|+++..++.|-..-...||..|. ++|++|.+++.+.++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 3456777778899999999999997 58999999999887764
No 303
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=49.54 E-value=39 Score=28.31 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=55.2
Q ss_pred EEEEEcCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCcccccccc---CCCCCCCCe-EEEEcCCCCCCCCCCccc
Q 012194 15 HCLVLSYPAQGHINP----LLQFAKRLDHK-GLKVTLVTTYFISKSLHR---DSSSSSASI-ALEAISDGYDQGGSAQAE 85 (468)
Q Consensus 15 ~il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~---~~~~~~~~i-~f~~~~~~~~~~~~~~~~ 85 (468)
+|+++.-...|.++| .+..|++|++. |.+|+.++........+. .. ..-|. +.+.+.+.... ..
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l--~~~G~d~v~~~~~~~~~-----~~ 73 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKAL--AKYGADKVYHIDDPALA-----EY 73 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHH--HSTTESEEEEEE-GGGT-----TC
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhh--hhcCCcEEEEecCcccc-----cc
Confidence 355555444666665 67889999885 889887766531222211 00 00132 23333211110 01
Q ss_pred cHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc---chHHHHHHHcCCceEEEc
Q 012194 86 SIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL---PWALDVAKKFGLVGAAFL 143 (468)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~---~~~~~~A~~lgiP~i~~~ 143 (468)
+...+. ..+.+++++. .+|+|+..... ..+..+|.++|.|++.-.
T Consensus 74 ~~~~~a--------~~l~~~~~~~-----~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 74 DPEAYA--------DALAELIKEE-----GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp -HHHHH--------HHHHHHHHHH-----T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHH--------HHHHHHHHhc-----CCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 122222 2233444442 25999988655 337889999999999743
No 304
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=49.49 E-value=2.6e+02 Score=27.28 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=36.1
Q ss_pred eeecCCcchHHHHHHcCCceee--cccccch------hHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 356 FLTHCGWNSTMEALSLGVPMVA--MPQWSDQ------STNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 356 ~I~HgG~~s~~Eal~~GvP~l~--~P~~~DQ------~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
+-|+ |..++..|+.+|.|+-. ++...|- -.|+-++.+..-.... -.+.+++..+|.++++|+
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-------vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-------VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-------EeccHHHHHHHHHHHHhh
Confidence 4444 67888899999988732 2222332 2233333333011222 346679999999999886
No 305
>PRK06849 hypothetical protein; Provisional
Probab=49.17 E-value=34 Score=33.51 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
.+|+||+..... .-.+.+++.|.++||+|..+....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357888875433 258999999999999999987654
No 306
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.14 E-value=1e+02 Score=26.92 Aligned_cols=146 Identities=12% Similarity=-0.015 Sum_probs=78.8
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhcc-CCeEEEeecchHHHhcccCcceee
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETS-QKGLVVNWCPQLEVLAHEAAGCFL 357 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~lL~~~~~~~~I 357 (468)
.+.++.|..|.++ ...+..|.+.|..+.++- .. +.+.+.+..+ .++.......+..-+..+++ ||
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl--Vi 75 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL--VI 75 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----CCHHHHHHHhCCCEEEEecCCChhhcCCceE--EE
Confidence 4557777777654 334555666777765443 21 2222221122 23545454445667888888 99
Q ss_pred ecCCcchHHHHHH----cCCceeecccccch-----hHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHH
Q 012194 358 THCGWNSTMEALS----LGVPMVAMPQWSDQ-----STNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGK 428 (468)
Q Consensus 358 ~HgG~~s~~Eal~----~GvP~l~~P~~~DQ-----~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~ 428 (468)
.--+...+.+.++ .++++-++ |. +..-..+.+- ++-+.+........-+..|++.|..++.. +..
T Consensus 76 aaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~-~~~ 149 (202)
T PRK06718 76 AATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE-SYE 149 (202)
T ss_pred EcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch-hHH
Confidence 9888777777665 45554332 33 2223333444 44444544311122235566666666632 234
Q ss_pred HHHHHHHHHHHHHHHH
Q 012194 429 EIRQNAGKWSNFAKEA 444 (468)
Q Consensus 429 ~~~~~a~~~~~~~~~~ 444 (468)
.+-+.+.++++.+++.
T Consensus 150 ~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 150 SYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777777777777754
No 307
>PRK06749 replicative DNA helicase; Provisional
Probab=48.22 E-value=46 Score=33.11 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
|++-.-|+.|-..-.+.+|...+.+|+.|.|++.+-..+.+
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql 229 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQL 229 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHH
Confidence 66777889999999999999999899999999987655433
No 308
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.04 E-value=19 Score=35.74 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=31.9
Q ss_pred hhhhhhcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 4 IEKKAASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 4 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
|.++.+.+++.||+++..|..| +..|+.|...+++||++....+
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 3456667778899988777544 4467888767899999976543
No 309
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=47.92 E-value=25 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.+|||.|+..|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999888777 47899999999999988754
No 310
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=47.37 E-value=85 Score=31.47 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=60.2
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHH
Q 012194 16 CLVLS-YPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKF 94 (468)
Q Consensus 16 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
|++.. ..+-|-..-+..|++.|+++|++|..+=+.. +.+. -.++..-.+.+...+. .+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D---------~~~~~~~~g~~~~~ld----------~~ 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYID---------PMFHTQATGRPSRNLD----------SF 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCC---------HHHHHHHhCCchhhCC----------cc
Confidence 44543 3345889999999999999999999875421 0000 0000000001100000 00
Q ss_pred HHhchHHHHHHHHHhcCCCCCccEEEeCCCc------------chHHHHHHHcCCceEEEcccc
Q 012194 95 WQIGPRSLCELVEKMNGSVVPVDCIVYDSFL------------PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 95 ~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~------------~~~~~~A~~lgiP~i~~~~~~ 146 (468)
. ...+.+.+.+.++.+ ..|++|+.... .....+|+.+++|++.+....
T Consensus 61 ~-~~~~~i~~~~~~~~~---~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 61 F-MSEAQIQECFHRHSK---GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred c-CCHHHHHHHHHHhcc---cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 123345555555543 35999966541 236799999999999998765
No 311
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=47.29 E-value=46 Score=26.66 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=29.4
Q ss_pred cEEEE-EcCCCccCHH--HHHHHHHHHHhCCCeE-EEEeCCccccccc
Q 012194 14 VHCLV-LSYPAQGHIN--PLLQFAKRLDHKGLKV-TLVTTYFISKSLH 57 (468)
Q Consensus 14 ~~il~-~~~~~~GH~~--p~l~La~~L~~rGh~V-t~~~~~~~~~~~~ 57 (468)
||++| +..+-+|+-. -.+.+|+.+.++||+| +++-..+..-...
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~ 48 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNAN 48 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHh
Confidence 67765 4555556655 4677899999999994 6666555554443
No 312
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=47.13 E-value=31 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|.|.++.=|+-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788887778899999999999999999999877443
No 313
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=47.06 E-value=32 Score=31.57 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|+|.++.=|+-|-..-...||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 67888877777999999999999999999998874
No 314
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=46.97 E-value=33 Score=30.34 Aligned_cols=45 Identities=9% Similarity=-0.033 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
.+-||++.+.++-.|-....=++-.|..+|++|++++..-..+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 456999999999999999999999999999999999976544433
No 315
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.92 E-value=1e+02 Score=29.84 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-------CeEEEEeCCc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKG-------LKVTLVTTYF 51 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG-------h~Vt~~~~~~ 51 (468)
+++|||.++..|++| .+||..|.+.| |+|++.+-..
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 457899999999988 57899999887 8999987654
No 316
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=46.87 E-value=66 Score=28.45 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=74.9
Q ss_pred eE-EEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc--hHHHhcccCcceeee
Q 012194 282 VV-YVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP--QLEVLAHEAAGCFLT 358 (468)
Q Consensus 282 ~I-~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp--q~~lL~~~~~~~~I~ 358 (468)
.| .+|-||. +....++.....+.+|..+.-.+.-. . .+ +++-++ +......+++ +|-
T Consensus 119 ~vgvlsAGTS---DlPvAeEa~~tae~lG~ev~~~~DvG----V-AG----------iHRLl~~l~r~~~~~~~~--lIV 178 (254)
T COG1691 119 KVGVLSAGTS---DLPVAEEAAVTAEELGVEVQKVYDVG----V-AG----------IHRLLSALKRLKIEDADV--LIV 178 (254)
T ss_pred eEEEEecCCC---CcchHHHHHHHHHHhCceEEEEEeec----c-ch----------HHhhhhHHHHHHhhCCCe--EEE
Confidence 45 8888886 44567777778888888776555321 0 11 456667 6777778888 999
Q ss_pred cCCcchHHHHHHcC---Cceeecccccchh----HHHHHHH-----hhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 359 HCGWNSTMEALSLG---VPMVAMPQWSDQS----TNGKYIM-----DVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 359 HgG~~s~~Eal~~G---vP~l~~P~~~DQ~----~na~~l~-----~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
-+|+-.++-++.+| +|+|.+|...--- .-|..+. .- |+|+.--.+ .+.+..+...|.+.
T Consensus 179 vAGMEGaLPsvvagLvD~PVIavPTsVGYG~g~gGiaaLltMLqSCsp-Gv~VVNIdN---GfGAa~~A~~I~r~ 249 (254)
T COG1691 179 VAGMEGALPSVVAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSCSP-GVGVVNIDN---GFGAAVLAVQILRR 249 (254)
T ss_pred EcccccchHHHHHhccCCCeEecccccccCcCCccHHHHHHHHHhcCC-CeEEEEccC---chHHHHHHHHHHHH
Confidence 99999888888776 7999999753221 1222222 23 566544433 56666666555554
No 317
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.63 E-value=35 Score=34.99 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=29.2
Q ss_pred cEEEEEc-------CCCccCHHHHH---HHHHHHHhCCCeEEEEeCCccc
Q 012194 14 VHCLVLS-------YPAQGHINPLL---QFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 14 ~~il~~~-------~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
+++++.| .+.-||+.+++ .+|+-+..+||+|.|+|+.+-.
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 4666644 22449999877 4677788899999999977543
No 318
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=46.27 E-value=34 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
..+.||.+-..++-|-.+.||.=|++|.++|.+|.+..-+.
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 35689999999999999999999999999999999866553
No 319
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=46.13 E-value=38 Score=31.73 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=31.3
Q ss_pred CCcEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 12 RLVHCL-VLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 12 ~~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
.+||++ |+.=|+-|-..-...||..|+++|++|.++-.+.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 345554 5556666899999999999999999999985443
No 320
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=45.94 E-value=48 Score=25.76 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEe-------ecchH---HHhcccCcceeeecCCcch
Q 012194 295 VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVN-------WCPQL---EVLAHEAAGCFLTHCGWNS 364 (468)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~-------~vpq~---~lL~~~~~~~~I~HgG~~s 364 (468)
-+...+++++++++|.+++.+....+. . ...-+..+.++..+ |+... ++..+..+ ...|+|+|-
T Consensus 11 Geia~r~~ra~r~~Gi~tv~v~s~~d~--~--s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGyg~ 84 (110)
T PF00289_consen 11 GEIAVRIIRALRELGIETVAVNSNPDT--V--STHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGGT--T--GHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTSST
T ss_pred CHHHHHHHHHHHHhCCcceeccCchhc--c--cccccccccceecCcchhhhhhccHHHHhhHhhhhcC--cccccccch
Confidence 345677899999999999988765422 1 11113455566654 56655 44445555 899999998
Q ss_pred HHHHH
Q 012194 365 TMEAL 369 (468)
Q Consensus 365 ~~Eal 369 (468)
..|..
T Consensus 85 lse~~ 89 (110)
T PF00289_consen 85 LSENA 89 (110)
T ss_dssp TTTHH
T ss_pred hHHHH
Confidence 87764
No 321
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=45.90 E-value=1.7e+02 Score=27.15 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=56.7
Q ss_pred CceEEEEecCcCCCCHHHHHHH---HHHH-HhCCCeEEEEEeCC-ccCCCCcchhhhccCCeEEE-eecchH--HHhccc
Q 012194 280 GSVVYVSFGSYAPLKVEEMEEL---AWGL-KATNQYFLWVVRES-EQAKLPENFSDETSQKGLVV-NWCPQL--EVLAHE 351 (468)
Q Consensus 280 ~~~I~is~Gs~~~~~~~~~~~~---~~a~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~nv~~~-~~vpq~--~lL~~~ 351 (468)
++.|.++.-.....+....+.+ ++.+ ++.+.++++..... ........+.+.++++..+. ..-|+. .+++++
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~ 251 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASA 251 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhC
Confidence 4578887754322233333333 3333 33477776554221 11111112223333333333 222333 678899
Q ss_pred CcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcc
Q 012194 352 AAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKM 397 (468)
Q Consensus 352 ~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~ 397 (468)
++ +|+-==+ ++.-|+.+|||.+.++. ++.....++.. |+
T Consensus 252 ~~--vI~~RlH-~~I~A~~~gvP~i~i~y---~~K~~~~~~~~-g~ 290 (298)
T TIGR03609 252 RL--VIGMRLH-ALILAAAAGVPFVALSY---DPKVRAFAADA-GV 290 (298)
T ss_pred CE--EEEechH-HHHHHHHcCCCEEEeec---cHHHHHHHHHh-CC
Confidence 98 9985333 45567789999998853 34455555555 54
No 322
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.90 E-value=51 Score=27.15 Aligned_cols=73 Identities=11% Similarity=0.273 Sum_probs=50.7
Q ss_pred cccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Q 012194 378 MPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDD 457 (468)
Q Consensus 378 ~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 457 (468)
.|+...+..+|+.+.+. -..|..+ ..+.|.+.+.+|+.|. .+-+-.+.+++..+.++ |....+.+..
T Consensus 78 yPWt~~~L~aa~el~ee---~eeLs~d-----eke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~~~d 144 (158)
T PF10083_consen 78 YPWTENALEAANELIEE---DEELSPD-----EKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDAIRD 144 (158)
T ss_pred CchHHHHHHHHHHHHHH---hhcCCHH-----HHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHHHHH
Confidence 68888999999988876 2334432 5688999999999773 27777888888888876 3344555555
Q ss_pred HHHHHH
Q 012194 458 FVANLI 463 (468)
Q Consensus 458 ~~~~l~ 463 (468)
++=++.
T Consensus 145 IlVdv~ 150 (158)
T PF10083_consen 145 ILVDVA 150 (158)
T ss_pred HHHHHH
Confidence 544443
No 323
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.82 E-value=1.6e+02 Score=29.38 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
...|+.++..+ .....+++.|.+.|-+|..+......+..++ ++.+ . . ...+..
T Consensus 310 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-------------~~~~--~--~-~~~D~~--- 363 (432)
T TIGR01285 310 GGKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-------------LPVE--T--V-VIGDLE--- 363 (432)
T ss_pred CCCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-------------CCcC--c--E-EeCCHH---
Confidence 35788776533 4778999999999999988776655432221 1100 0 0 011111
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFL 143 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~ 143 (468)
.+.+++++ .++|+||.+. ....+|+++|||++.+.
T Consensus 364 ---------~l~~~i~~-----~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 ---------DLEDLACA-----AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred ---------HHHHHHhh-----cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 12223322 2369999884 35778999999999754
No 324
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=44.99 E-value=29 Score=35.64 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=49.1
Q ss_pred cchHHHhcccCcceeeecC-Cc-chHHHHHHcCCceeeccccc-----chhHHHHHHHhhhcceeEecCCCCCccCHHHH
Q 012194 342 CPQLEVLAHEAAGCFLTHC-GW-NSTMEALSLGVPMVAMPQWS-----DQSTNGKYIMDVWKMGLKVPADEKGIVRREAI 414 (468)
Q Consensus 342 vpq~~lL~~~~~~~~I~Hg-G~-~s~~Eal~~GvP~l~~P~~~-----DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l 414 (468)
+++.+++..|++++|-+-= =| -|=+||++.|||.|..=+.+ .+... .-... |+-+.-.. .-+.++.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~-GV~VvdR~----~~n~~e~ 533 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEY-GVYVVDRR----DKNYDES 533 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGG-TEEEE-SS----SS-HHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCC-cEEEEeCC----CCCHHHH
Confidence 5788999999996666510 02 48899999999999865532 22221 11334 55443333 3455555
Q ss_pred HHHHHHHhc----C--ccHHHHHHHHHHHHHHH
Q 012194 415 AHCISEILE----G--ERGKEIRQNAGKWSNFA 441 (468)
Q Consensus 415 ~~~i~~ll~----~--~~~~~~~~~a~~~~~~~ 441 (468)
.+.+.+.|. - .+....|++++++++.+
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 555555542 1 12245677777766554
No 325
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.87 E-value=64 Score=30.36 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHc----
Q 012194 296 EEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSL---- 371 (468)
Q Consensus 296 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~---- 371 (468)
+.+..+.+.+++.+..+.+...... ..+.. .+ . ...-..+++ +|+-||=||+++++..
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~--~~~~~------------~~-~-~~~~~~~d~--vi~~GGDGT~l~~~~~~~~~ 80 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPK--DNPYP------------VF-L-ASASELIDL--AIVLGGDGTVLAAARHLAPH 80 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchh--hcccc------------ch-h-hccccCcCE--EEEECCcHHHHHHHHHhccC
Confidence 4566677778888877654332111 01000 01 1 222235677 9999999999999864
Q ss_pred CCceeeccc
Q 012194 372 GVPMVAMPQ 380 (468)
Q Consensus 372 GvP~l~~P~ 380 (468)
++|++++..
T Consensus 81 ~~pv~gin~ 89 (305)
T PRK02645 81 DIPILSVNV 89 (305)
T ss_pred CCCEEEEec
Confidence 789888765
No 326
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=43.65 E-value=30 Score=31.11 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLH 57 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~ 57 (468)
|++--.|+.+=+.-.+.|.+.|.++ ||+|.++.++...+.+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4443333333446899999999999 99999999988777666
No 327
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.51 E-value=21 Score=34.62 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
-+..=||+-.-|+-|--.=+++++..|+++| +|.|++++.....++
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 3445678888889999999999999999999 999999988766554
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=43.05 E-value=60 Score=30.22 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
++-+|.+...|+-|--.-.=.|+++|.++||+|-++..+...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 344677999999999999999999999999999988765443
No 329
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.97 E-value=38 Score=28.88 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeee
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLT 358 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~ 358 (468)
.+.+-.+.+|.++ +.+.+.++.+|.+++..-....... .+. -....+.+..++|+.+|+ ++.
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~~---~~~------~~~~~~~~l~ell~~aDi--v~~ 97 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPEE---GAD------EFGVEYVSLDELLAQADI--VSL 97 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHHH---HHH------HTTEEESSHHHHHHH-SE--EEE
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChhh---hcc------cccceeeehhhhcchhhh--hhh
Confidence 4457778888765 4567777888988775543332111 000 012377788999999999 888
Q ss_pred cCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcce-eEecCCCCCccCHHHHHHHHH
Q 012194 359 HCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG-LKVPADEKGIVRREAIAHCIS 419 (468)
Q Consensus 359 HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G-~~l~~~~~~~~~~~~l~~~i~ 419 (468)
|.-.+. ...+..|+..+..+ +=| +.+...+-+-++.++|.++++
T Consensus 98 ~~plt~----------------~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 98 HLPLTP----------------ETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SSSST----------------TTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhcccc----------------ccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHh
Confidence 864332 12456677777777 655 444444333556666665554
No 330
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.78 E-value=84 Score=31.13 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=23.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|++++..+.. .+.+++.|.+.|-+|..+.+..
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~ 313 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSI 313 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCC
Confidence 6666544432 6669999999999999988863
No 331
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=42.49 E-value=98 Score=30.80 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=22.2
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeec
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAM 378 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~ 378 (468)
++.+ +++|.|-| .+.+|.+.++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3455 89998865 677999999999998
No 332
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=42.28 E-value=22 Score=32.30 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 28 NPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 28 ~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
.-+-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346689999999999999999865
No 333
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.17 E-value=40 Score=34.97 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=39.5
Q ss_pred ccCcceeeecCCcchHHHHHHc----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcC
Q 012194 350 HEAAGCFLTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEG 424 (468)
Q Consensus 350 ~~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 424 (468)
.+++ +|+-||=||++.|.+. ++|++.+-.. .+|. +. +++.+++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGF-L~-----~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGF-LT-----EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCc-Cc-----ccCHHHHHHHHHHHHcC
Confidence 5677 9999999999999774 7788876532 1232 22 45778899999998877
No 334
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=42.13 E-value=29 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.4
Q ss_pred ccCHHH-HHHHHHHHHh-CCCeEEEEeCCccccccc
Q 012194 24 QGHINP-LLQFAKRLDH-KGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 24 ~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 57 (468)
.||... ...+.++|.+ +||+|.++.++...+.+.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 378766 8899999984 699999999988776554
No 335
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=41.91 E-value=55 Score=29.41 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCc-cCH---HHHHHHHHHHHhCCCeEEEEeCCcc--ccccccCCCCCCCCeE--EEEcCCCCCCCCCCc
Q 012194 12 RLVHCLVLSYPAQ-GHI---NPLLQFAKRLDHKGLKVTLVTTYFI--SKSLHRDSSSSSASIA--LEAISDGYDQGGSAQ 83 (468)
Q Consensus 12 ~~~~il~~~~~~~-GH~---~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~i~--f~~~~~~~~~~~~~~ 83 (468)
++..|+|.+..+. .-- .-+.+|++.|.++|.+|.+++++.. .+.+.+. ..+.. +..+..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQI----AAGLQNPVINLAG--------- 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHH----HTTHTTTTEEETT---------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHH----HHhcccceEeecC---------
Confidence 3456777666544 222 2368999999999999988888776 2222211 00110 111110
Q ss_pred cccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccc
Q 012194 84 AESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
. ..+.++..-+.. -|++|+.- .+.+.+|..+|+|++.++...
T Consensus 171 ~---------------~~l~e~~ali~~----a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 K---------------TSLRELAALISR----ADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp T---------------S-HHHHHHHHHT----SSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred C---------------CCHHHHHHHHhc----CCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 0 112233333332 48998653 457899999999999987544
No 336
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.75 E-value=32 Score=33.73 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.+.+||++...|+. ...=...+.++|.+.|++|.++.++.....+.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 34568887766655 45577899999999999999999988776665
No 337
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=41.60 E-value=38 Score=33.90 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHh--------CCCe----EEEEeCC-------ccccccccCCCCCCCCeEEEEcCCCCCCC---CCC
Q 012194 25 GHINPLLQFAKRLDH--------KGLK----VTLVTTY-------FISKSLHRDSSSSSASIALEAISDGYDQG---GSA 82 (468)
Q Consensus 25 GH~~p~l~La~~L~~--------rGh~----Vt~~~~~-------~~~~~~~~~~~~~~~~i~f~~~~~~~~~~---~~~ 82 (468)
|.+-=.+.+|++|.+ .|-+ |.++|-- .+....++. ...++.....+|.+...+ .+-
T Consensus 297 GQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~--~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 297 GQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKV--SGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEE--TTESSEEEEEE-ESESTEEE-S--
T ss_pred CcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcccccccc--CCCCCcEEEEecCCCCcchhhhcc
Confidence 334446677777743 3554 5555521 122233332 233467777888443321 111
Q ss_pred ccccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEccc
Q 012194 83 QAESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQ 145 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~--~~~~~~A~~lgiP~i~~~~~ 145 (468)
....+..+++.|... ....+..++. .. ||+|+..+.- ..|..+++++|+|.+.+..+
T Consensus 375 srf~lWPyLe~fa~d---~~~~i~~e~~--~~-PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 375 SRFDLWPYLEEFADD---AEREILAELQ--GK-PDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp -GGG-GGGHHHHHHH---HHHHHHHHHT--S---SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred chhhchhhHHHHHHH---HHHHHHHHhC--CC-CcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 223455555555443 3344444543 23 4999987543 45888999999999886543
No 338
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=41.35 E-value=1.5e+02 Score=28.43 Aligned_cols=48 Identities=17% Similarity=-0.084 Sum_probs=36.4
Q ss_pred hHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCC
Q 012194 269 SCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRES 319 (468)
Q Consensus 269 ~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 319 (468)
....++... ++++.|.+.......+....+++.+++.+...+++++++
T Consensus 57 ~v~~~~~~G---GT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 57 DVDDLINRG---GTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred chhHHHhcC---CeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345555543 378888777766678888899999999999888888765
No 339
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=41.31 E-value=2.4e+02 Score=24.97 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=33.0
Q ss_pred hHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEE
Q 012194 269 SCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFL 313 (468)
Q Consensus 269 ~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i 313 (468)
...+|+... .+.+.||-+-|.........++..++|+++|..+.
T Consensus 23 ~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 23 FIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 344555543 45699999888877667788999999999998753
No 340
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=41.09 E-value=58 Score=31.67 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=46.9
Q ss_pred cceeeecCCcchHHHHHHcC-----------------CceeecccccchhHHHHHHHhhhcceeE-ecCCCCCccCHHHH
Q 012194 353 AGCFLTHCGWNSTMEALSLG-----------------VPMVAMPQWSDQSTNGKYIMDVWKMGLK-VPADEKGIVRREAI 414 (468)
Q Consensus 353 ~~~~I~HgG~~s~~Eal~~G-----------------vP~l~~P~~~DQ~~na~~l~~~~g~G~~-l~~~~~~~~~~~~l 414 (468)
..+++|.||..+..-|+.+. .|++.++-.. ++-+.+...-+ |+|+. ++.++++.++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~l-Glg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARIL-GLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHT-TSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhccee-eeEEEEecCCcchhhhHHHh
Confidence 34599999999888776432 4566666433 45566666666 88854 44445678999999
Q ss_pred HHHHHHHhcC
Q 012194 415 AHCISEILEG 424 (468)
Q Consensus 415 ~~~i~~ll~~ 424 (468)
+++|.+..++
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887655
No 341
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=41.04 E-value=33 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=27.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
|||+++..|-.| |+-|.+|+++||+||++-..++.
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCcc
Confidence 578887766444 78899999999999998876543
No 342
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.99 E-value=1.6e+02 Score=25.71 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHK--GLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
|||+++..|..+=+ .++.+.+.+. +++|.++.+......+.+. +...|+.+..++
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~--a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLER--AEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHH--HHHcCCCEEEEC
Confidence 78999888764333 3566667665 4778776544321112111 112377777665
No 343
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.98 E-value=30 Score=33.84 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.+||++...|+.|= .-...+.+.|.+.|++|.++.++...+.+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 46888776665544 558999999999999999999988776665
No 344
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=40.77 E-value=48 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHhcCccHHHHHHHHHHHH
Q 012194 410 RREAIAHCISEILEGERGKEIRQNAGKWS 438 (468)
Q Consensus 410 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 438 (468)
++++|.+||..+.++. .++++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5789999999998773 37888777653
No 345
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.65 E-value=39 Score=31.92 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.|+|.++..|++| -+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3789999999998 58999999999999988754
No 346
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=40.62 E-value=1.1e+02 Score=30.61 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcch-----------HHHHHHHcCCceEEEc
Q 012194 84 AESIEAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPW-----------ALDVAKKFGLVGAAFL 143 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~-----------~~~~A~~lgiP~i~~~ 143 (468)
..+...+++.+.......+.+.++.+.+. +|+||...+... .+.+|+..+.|.|.+.
T Consensus 97 ~~s~~~yy~~~~~~l~~~v~~s~~~l~~~---~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~ 164 (486)
T COG1492 97 RKSAVEYYQEGKGLLWVAVKESLERLDRE---YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVG 164 (486)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhc---ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEE
Confidence 34556666666666666777777777654 799998876533 3467899999999874
No 347
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=40.32 E-value=49 Score=27.97 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=22.3
Q ss_pred cccCcceeeecCCc------chHHHHHHcCCceeeccc
Q 012194 349 AHEAAGCFLTHCGW------NSTMEALSLGVPMVAMPQ 380 (468)
Q Consensus 349 ~~~~~~~~I~HgG~------~s~~Eal~~GvP~l~~P~ 380 (468)
.++.+ +++|.|- +++.+|...++|+|++.-
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 44566 8888874 477889999999998763
No 348
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=40.17 E-value=3.2e+02 Score=27.15 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=25.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|+.++..+.. .+.+++-|.+.|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777766654 889999999999999988766
No 349
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=40.15 E-value=2.7e+02 Score=30.07 Aligned_cols=161 Identities=12% Similarity=0.144 Sum_probs=91.8
Q ss_pred ceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCC--------CCcchhhhccCCeEE---EeecchH---H
Q 012194 281 SVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAK--------LPENFSDETSQKGLV---VNWCPQL---E 346 (468)
Q Consensus 281 ~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~nv~~---~~~vpq~---~ 346 (468)
.++|+++=.+--.+.......+..|.+.|.+++..+|...... +..+-. .+...+.- ++-+|.. +
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e-d~~~~~~TG~efD~ls~~~~~~ 650 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE-DVSSMALTGSEFDDLSDEELDD 650 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc-cccccccchhhhhcCCHHHHHH
Confidence 4888877666555667788889999999999999997652110 000000 00001111 1222211 2
Q ss_pred HhcccCcceeeecCCc---chHHHHHHcCCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 347 VLAHEAAGCFLTHCGW---NSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 347 lL~~~~~~~~I~HgG~---~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
+..++. ++..+-- --+.|||..--=++ -.++|.-.-|-.+..+ .+|+..... ..+--.+|-+=+|.
T Consensus 651 ~~~~~~---vFaR~~P~HK~kIVeaLq~~geiv--AMTGDGVNDApALK~A-dIGIAMG~~-----GTdVaKeAsDMVL~ 719 (972)
T KOG0202|consen 651 AVRRVL---VFARAEPQHKLKIVEALQSRGEVV--AMTGDGVNDAPALKKA-DIGIAMGIS-----GTDVAKEASDMVLA 719 (972)
T ss_pred Hhhcce---EEEecCchhHHHHHHHHHhcCCEE--EecCCCccchhhhhhc-ccceeecCC-----ccHhhHhhhhcEEe
Confidence 222222 2333321 23556665544433 3478888888889999 999988754 44444555556677
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 424 GERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
|.+..++ -++++||-+..+++..||+.|+.
T Consensus 720 DDnFstI-----------vaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 720 DDNFSTI-----------VAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred cCcHHHH-----------HHHHHHhHHHHHHHHHHHHHHHh
Confidence 7633222 23555666667788888887764
No 350
>PRK13604 luxD acyl transferase; Provisional
Probab=39.82 E-value=58 Score=30.61 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLV 47 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 47 (468)
+.+++++++|..++-.-+..+|+.|.++|+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44677888888888777999999999999999765
No 351
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=39.70 E-value=37 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=27.6
Q ss_pred EEE-EEcCCCccCHHHHHHHHHHHHhC-CCeEEE
Q 012194 15 HCL-VLSYPAQGHINPLLQFAKRLDHK-GLKVTL 46 (468)
Q Consensus 15 ~il-~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~ 46 (468)
||+ .++.-+..|..-.++||..|.+. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 555 57888889999999999999999 999884
No 352
>PRK09739 hypothetical protein; Provisional
Probab=39.67 E-value=73 Score=27.67 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccC--HH-HHHHHHHHHHhCCCeEEEEe
Q 012194 12 RLVHCLVLSYPAQGH--IN-PLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 12 ~~~~il~~~~~~~GH--~~-p~l~La~~L~~rGh~Vt~~~ 48 (468)
..|||+++....+.+ -. -.-.+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 357898765443422 22 23455677777899998765
No 353
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=39.66 E-value=1.2e+02 Score=31.37 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.9
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.||...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998876 5789999999999873
No 354
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=39.64 E-value=1.4e+02 Score=30.97 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=22.7
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.||...++|+|++-
T Consensus 64 ~~gv--~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGV--VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 99998855 7889999999999983
No 355
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=39.59 E-value=1.1e+02 Score=30.35 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHH
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYL 91 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~ 91 (468)
+..||+++..+ .-.+.+++.|.+.|-+|..+..........+ .+.+..-..+... .
T Consensus 298 ~gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~-------~~~~~~~~~~~~~-~----------- 353 (428)
T cd01965 298 GGKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK-------RMELLASLEGIPA-E----------- 353 (428)
T ss_pred cCCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHH-------HHHHhhhhcCCCc-e-----------
Confidence 45688777433 3567889999999999887665333222111 0000000000000 0
Q ss_pred HHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEc
Q 012194 92 EKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFL 143 (468)
Q Consensus 92 ~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~ 143 (468)
........++.+.+.+. ++|+||.+.. ...+|+++|+|++.++
T Consensus 354 ----~v~~~d~~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 354 ----VVFVGDLWDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred ----EEECCCHHHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 00111223333333332 3599999954 4678999999998754
No 356
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=39.10 E-value=1.4e+02 Score=31.11 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=22.6
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4555 89998855 7889999999999873
No 357
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=38.98 E-value=60 Score=25.87 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=28.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
++++.+|..++-.-+..+++.|+++|+.|..+.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356777878888889999999999999999884
No 358
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.84 E-value=72 Score=24.99 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888765
No 359
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=38.83 E-value=97 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=23.0
Q ss_pred ccEEE-eCCCc-chHHHHHHHcCCceEEEcccc
Q 012194 116 VDCIV-YDSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 116 ~DlVI-~D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
||+|| .|+.. ..+..=|.++|||+|.+.-+.
T Consensus 158 Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 58877 45544 557888999999999986544
No 360
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=38.79 E-value=3.2e+02 Score=25.23 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFW 95 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (468)
|++...|+.|--.-...|.+.|.+.|.+|.++...... +.+. ....... . +..+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~--------------------~y~~~~~-E---k~~R 57 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN--------------------DYADSKK-E---KEAR 57 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS--------------------SS--GGG-H---HHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh--------------------hhhchhh-h---HHHH
Confidence 56788999999999999999999999999998854433 2211 0111111 1 1111
Q ss_pred HhchHHHHHHHHHhcCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEcccc
Q 012194 96 QIGPRSLCELVEKMNGSVVPVDCIVYDSFLP------WALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 96 ~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~------~~~~~A~~lgiP~i~~~~~~ 146 (468)
. .++..++.... .. ++||+|.... -..-+|+..+++++.++...
T Consensus 58 ~----~l~s~v~r~ls--~~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~ 107 (270)
T PF08433_consen 58 G----SLKSAVERALS--KD-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDC 107 (270)
T ss_dssp H----HHHHHHHHHHT--T--SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred H----HHHHHHHHhhc--cC-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 1 12233333322 23 8999998652 25689999999999877655
No 361
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.60 E-value=2.5e+02 Score=24.03 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=32.5
Q ss_pred HHc--CCceeecccccch-------hHHHHHHHhhhcceeEecCC--------CCC-ccCHHHHHHHHHHHhc
Q 012194 369 LSL--GVPMVAMPQWSDQ-------STNGKYIMDVWKMGLKVPAD--------EKG-IVRREAIAHCISEILE 423 (468)
Q Consensus 369 l~~--GvP~l~~P~~~DQ-------~~na~~l~~~~g~G~~l~~~--------~~~-~~~~~~l~~~i~~ll~ 423 (468)
+.. ++|++++|-.+.+ ..|..+|.+. |+=+.-+.. .++ -.+.++|.+.+.+.+.
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 445 8999999964332 4578888887 754333221 011 3456777777666553
No 362
>PRK04148 hypothetical protein; Provisional
Probab=38.45 E-value=74 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+.+||+.+..| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 45789988888 44 24578888999999876543
No 363
>PRK06835 DNA replication protein DnaC; Validated
Probab=38.40 E-value=32 Score=32.74 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=37.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
..++|+..+|.|-..=..++|++|.++|+.|.|++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56888888888888888999999999999999999877655554
No 364
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=38.25 E-value=2.6e+02 Score=24.13 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGL--KVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~ 50 (468)
|||+++..|+.+=+ .++.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEEC
Confidence 58888887655444 456666766655 66665444
No 365
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.08 E-value=1.5e+02 Score=28.02 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=56.4
Q ss_pred cEEEEEcCCCccC-----HHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHH
Q 012194 14 VHCLVLSYPAQGH-----INPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIE 88 (468)
Q Consensus 14 ~~il~~~~~~~GH-----~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~ 88 (468)
..|++.+..+.|. ..-+..|++.|.++|++|.+++++.-++..++. ... .+.... ++
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i----~~~-----~~~~~~--~l------- 236 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEI----EAL-----LPGELR--NL------- 236 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHH----HHh-----CCcccc--cC-------
Confidence 3455555443332 235789999999889999998887655544421 000 000000 00
Q ss_pred HHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcc
Q 012194 89 AYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~ 144 (468)
. ....+.++..-+.. -|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 237 ------~--g~~sL~el~ali~~----a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 ------A--GETSLDEAVDLIAL----AKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ------C--CCCCHHHHHHHHHh----CCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0 11123333333332 48999763 3578999999999998765
No 366
>CHL00175 minD septum-site determining protein; Validated
Probab=37.86 E-value=64 Score=29.78 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=34.0
Q ss_pred hhhhhcCCCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 5 EKKAASCRLVHCLVLSY--PAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 5 ~~~~~~~~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|.|....+.+||+.+.. |+-|=-.-...||..|+++|++|.++=.+.
T Consensus 6 ~~~~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 6 EDKEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred hhhhhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 44554445556665444 456888999999999999999998885443
No 367
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=37.84 E-value=2.7e+02 Score=24.12 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=54.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc------cccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHH
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS------KSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEA 89 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~ 89 (468)
|.+++..+.|-....+.+|-+-.-+|.+|.++-.-... ..+. ....++.|+..++++.- ... +...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~----~~~~~v~~~~~~~g~tw-~~~---~~~~ 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE----KFGLGVEFHGMGEGFTW-ETQ---DREA 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH----hhccceeEEecCCceeC-CCc---CcHH
Confidence 56777778888777777766666678888766432111 1111 11246888888876543 111 1111
Q ss_pred HHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcc
Q 012194 90 YLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLP 126 (468)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~ 126 (468)
.. ......+....+.+.+. .+|+||.|.+..
T Consensus 103 ---d~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 103 ---DI-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred ---HH-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 11 22333445555555543 479999998764
No 368
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=37.79 E-value=2.1e+02 Score=29.45 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=64.5
Q ss_pred cCHHHHHHHH-HHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCC-CC------------CC----CCCcccc
Q 012194 25 GHINPLLQFA-KRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDG-YD------------QG----GSAQAES 86 (468)
Q Consensus 25 GH~~p~l~La-~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~-~~------------~~----~~~~~~~ 86 (468)
|++.-.+.+| +.+.+.|++|.+.-+. ..+.+++. ..+..+.++.. ++ .. ++.....
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~-----~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~ 110 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSR-----LSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPP 110 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHh-----CCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccH
Confidence 7777788888 4466779988776653 44455532 13444444311 10 00 0111111
Q ss_pred HHHHHHHHHH--------hchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEccc
Q 012194 87 IEAYLEKFWQ--------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQ 145 (468)
Q Consensus 87 ~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~ 145 (468)
-...+..+.. .........+.++.+. .+++||.|. .+...|+++|++.+.+.+.
T Consensus 111 ~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 111 ALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 1112222222 1345677888888775 489999995 4678999999999988763
No 369
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.66 E-value=50 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
...||+++..|.-| ...++.|.+.||+|+++.+
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 44688888766433 6789999999999999964
No 370
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=37.61 E-value=51 Score=28.77 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.1
Q ss_pred hhcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012194 8 AASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLV 47 (468)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 47 (468)
..+.+.++|++...|..| ..+|+.|.+.||+|++.
T Consensus 23 ~~~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 344567899998887545 57899999999999954
No 371
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=37.60 E-value=42 Score=31.69 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=31.1
Q ss_pred cEEEEEcCC--Cc-cCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 14 VHCLVLSYP--AQ-GHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 14 ~~il~~~~~--~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
|||+|+.-+ +. -+..-..+|.++-++|||+|.++.+.+..-
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~ 44 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSV 44 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEE
Confidence 678877653 22 445568899999999999999999876643
No 372
>PRK08322 acetolactate synthase; Reviewed
Probab=37.48 E-value=1.3e+02 Score=31.11 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=22.6
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGV--CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3445 99998855 7889999999999874
No 373
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.32 E-value=1.8e+02 Score=24.38 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred chHHHHHHcCCceeeccc--ccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Q 012194 363 NSTMEALSLGVPMVAMPQ--WSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAGKWSNF 440 (468)
Q Consensus 363 ~s~~Eal~~GvP~l~~P~--~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~ 440 (468)
-|+.|--.+|.=.+. |. ..=+..|++..++. |.=..+.-+ ..+.++|.++..+=|+|.+.++++..+.++.+.
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aVk---g~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAVK---GNTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEeec---CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 366666666655432 11 11246799999999 888777766 678999999999999997667888888877665
Q ss_pred HH
Q 012194 441 AK 442 (468)
Q Consensus 441 ~~ 442 (468)
.+
T Consensus 163 A~ 164 (176)
T COG3195 163 AL 164 (176)
T ss_pred HH
Confidence 44
No 374
>PRK09330 cell division protein FtsZ; Validated
Probab=37.29 E-value=3.5e+02 Score=26.45 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred hcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 9 ASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKG-LKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 9 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
.....++|-++..|+.| -....+|.+.| +.|.|+.-......+.++ ... .-+.+...... ++....++
T Consensus 9 ~~~~~~~IkViGvGG~G-----~Nav~~m~~~~~~~v~fia~NTD~q~L~~~----~a~-~ki~lG~~~t~-GlGaG~~p 77 (384)
T PRK09330 9 EENQGAVIKVIGVGGGG-----GNAVNRMIEEGIQGVEFIAANTDAQALLKS----KAP-VKIQLGEKLTR-GLGAGANP 77 (384)
T ss_pred ccccCCeEEEEEECCcH-----HHHHHHHHHcCCCCceEEEEeCcHHHHhcC----CCC-eEEEcCCcccc-cCCCCCCH
Confidence 34456899999988887 35566676665 556665544444444432 111 22233332222 22222333
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCc---------chHHHHHHHcCCceEEEcccc
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFL---------PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~---------~~~~~~A~~lgiP~i~~~~~~ 146 (468)
. .-+ ....+....+.+.+. . .|+|+.-.-. +....+|+.+|++++.+.+.|
T Consensus 78 e-~G~---~aaee~~e~I~~~l~-~---~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~P 137 (384)
T PRK09330 78 E-VGR---KAAEESREEIREALE-G---ADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKP 137 (384)
T ss_pred H-HHH---HHHHHHHHHHHHHHc-C---CCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3 111 112222233333332 2 4777755432 113467789999999988766
No 375
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.02 E-value=47 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+||.|+-.|..| .++|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 578888888776 47899999999999998754
No 376
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=37.00 E-value=49 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
.+|||++. |+.|.+- ..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 46888877 4444443 4678999999999998864
No 377
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.79 E-value=55 Score=25.61 Aligned_cols=37 Identities=16% Similarity=-0.034 Sum_probs=31.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
++..+.++..|......++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5777888889999999999999999999999876443
No 378
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=36.70 E-value=31 Score=30.91 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 18 VLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 18 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
+++..+.|-+- .++|++|.++|++|+++.
T Consensus 18 ~itN~SSGgIG--~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 18 SITNHSTGHLG--KIITETFLSAGHEVTLVT 46 (227)
T ss_pred eecCCcccHHH--HHHHHHHHHCCCEEEEEc
Confidence 44444444332 478999999999999875
No 379
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.38 E-value=41 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|||.|+..|..| .++|+.|.++||+|+.+-
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 689999888666 478999999999999876
No 380
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.26 E-value=79 Score=25.15 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=31.9
Q ss_pred EEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 17 LVLSYP-AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 17 l~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+++..| ..-.+.-.+-+...|..+|++|+++.++..-..++
T Consensus 7 v~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLle 48 (148)
T COG4081 7 VSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLLE 48 (148)
T ss_pred EEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheeee
Confidence 344444 34667778899999999999999999987776666
No 381
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=36.10 E-value=57 Score=28.10 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|||.++. .||+- +.+|-.|+++||+|+.+-...
T Consensus 1 M~I~ViG---lGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG---LGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC---CCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 6888774 44443 677889999999999886543
No 382
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.02 E-value=42 Score=32.06 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|||.|+..|..| ..+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 789999888777 457888999999999988643
No 383
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=36.02 E-value=54 Score=29.55 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=28.7
Q ss_pred hcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 9 ASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 9 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
..+..++|+++.-...--..-+-.....|.++||+|++++-.
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345568888655443444455666777788999999988754
No 384
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=35.72 E-value=5.9e+02 Score=27.43 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=30.2
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 13 LVHCLVLSY--PAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
+.|+++++. ++-|--.-...||..|+..|++|.++-.+-.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345655444 3558888899999999999999999876544
No 385
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=35.57 E-value=1.1e+02 Score=29.39 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGL-KVTLVTT 49 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~ 49 (468)
.+..||+++..|+-| -.+|+.|++.|. +|+++=.
T Consensus 22 L~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 22 LREKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 456899999998777 467888999998 7777655
No 386
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=35.56 E-value=1.8e+02 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=22.3
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|||++.
T Consensus 68 ~~gv--~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGV--CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEE--EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 4445 88888855 6789999999999974
No 387
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=35.41 E-value=31 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.8
Q ss_pred cCcceeeecCCcchHHHHHHc----CCceeeccc
Q 012194 351 EAAGCFLTHCGWNSTMEALSL----GVPMVAMPQ 380 (468)
Q Consensus 351 ~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~ 380 (468)
+++ +|+-||=||++.|++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 577 9999999999988664 688887653
No 388
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=35.28 E-value=49 Score=31.76 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=56.0
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHH
Q 012194 15 HCLVLSYPAQG---H--INPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEA 89 (468)
Q Consensus 15 ~il~~~~~~~G---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~ 89 (468)
-|+|.+..+.| + ..-+.+|++.|.++|++|.+.+++.-++..++. ... .+..... . .-+
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i----~~~-----~~~~~~~-~---~~~--- 245 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEI----LAA-----LNTEQQA-W---CRN--- 245 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHH----HHh-----ccccccc-c---eee---
Confidence 45666643322 1 234789999998889999998877665544421 000 0000000 0 000
Q ss_pred HHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcc
Q 012194 90 YLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~ 144 (468)
+. ....+.++..-+.. -|++|+.- .+.+.+|..+|+|++.++.
T Consensus 246 ----l~--g~~sL~el~ali~~----a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 246 ----LA--GETQLEQAVILIAA----CKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ----cc--CCCCHHHHHHHHHh----CCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 00 00123333333332 48999763 3578999999999998765
No 389
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.10 E-value=2.7e+02 Score=23.25 Aligned_cols=135 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred EecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchH
Q 012194 286 SFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNST 365 (468)
Q Consensus 286 s~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~ 365 (468)
-+||.. +....+++...++.++..+-..+-+.+. .|+.+ .+|+-+..= .+.++ ||.=+|...-
T Consensus 4 imGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaHR--tp~~~----------~~~~~~a~~-~g~~v--iIa~AG~aa~ 66 (156)
T TIGR01162 4 IMGSDS--DLPTMKKAADILEEFGIPYELRVVSAHR--TPELM----------LEYAKEAEE-RGIKV--IIAGAGGAAH 66 (156)
T ss_pred EECcHh--hHHHHHHHHHHHHHcCCCeEEEEECccc--CHHHH----------HHHHHHHHH-CCCeE--EEEeCCccch
Confidence 345543 5667888888888888764333322211 11111 111111000 13445 8988886644
Q ss_pred HHHHH---cCCceeecccccc-hhHHHHHH--Hh--hhc--ceeEecCCCCCccCHHHHHHHHHHHhcCccHHHHHHHHH
Q 012194 366 MEALS---LGVPMVAMPQWSD-QSTNGKYI--MD--VWK--MGLKVPADEKGIVRREAIAHCISEILEGERGKEIRQNAG 435 (468)
Q Consensus 366 ~Eal~---~GvP~l~~P~~~D-Q~~na~~l--~~--~~g--~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 435 (468)
+-.+. .-+|+|.+|.... =......+ .+ . | ++...-.. ..++.-+...|-. +.|+ +++++.+
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I~~---~~nAa~~AaqIl~-~~d~---~l~~kl~ 138 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAIGN---AGNAALLAAQILG-IKDP---ELAEKLK 138 (156)
T ss_pred hHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEcCC---hhHHHHHHHHHHc-CCCH---HHHHHHH
Confidence 44433 3589999998542 11122222 22 2 3 22222212 3455555555533 4554 8888888
Q ss_pred HHHHHHHHHH
Q 012194 436 KWSNFAKEAV 445 (468)
Q Consensus 436 ~~~~~~~~~~ 445 (468)
..++..++.+
T Consensus 139 ~~r~~~~~~v 148 (156)
T TIGR01162 139 EYRENQKEEV 148 (156)
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 390
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=34.84 E-value=92 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLK--VTLVTT 49 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~ 49 (468)
|||+|+..++. .-+..+.++|.+++|+ |..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 79999876655 4466677899999998 444443
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=34.79 E-value=47 Score=31.28 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.|||+++..|+-|=+ +|..|.+.||+|+++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 489999999988854 466688899999999874
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=34.70 E-value=49 Score=29.57 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|+|+++..|-.| ..+|+.|.+.||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 567777666555 579999999999999887643
No 393
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=34.63 E-value=75 Score=30.21 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.5
Q ss_pred EEE--EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 16 CLV--LSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 16 il~--~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 52 IsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 52 IVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 456 78899999999999999999999999999977654
No 394
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=34.61 E-value=81 Score=29.50 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccCH----HHHHHHHHHHHhCCCeEEEEe
Q 012194 12 RLVHCLVLSYPAQGHI----NPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~----~p~l~La~~L~~rGh~Vt~~~ 48 (468)
+++||+++..|....- .-..+++++|.+.||+|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 4679998887755432 345688999999999998764
No 395
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.52 E-value=3.6e+02 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=29.9
Q ss_pred cEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 14 VHCLVLS--YPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 14 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
.||+.++ .|+-|--.-...||..|+..|++|.++-.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3554433 44569999999999999999999999866544
No 396
>PRK11269 glyoxylate carboligase; Provisional
Probab=34.44 E-value=1.4e+02 Score=31.11 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.4
Q ss_pred eeecCC------cchHHHHHHcCCceeecc
Q 012194 356 FLTHCG------WNSTMEALSLGVPMVAMP 379 (468)
Q Consensus 356 ~I~HgG------~~s~~Eal~~GvP~l~~P 379 (468)
+++|.| .+.+.+|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 777777 678899999999999873
No 397
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=34.32 E-value=82 Score=26.44 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=31.6
Q ss_pred cEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 14 VHCL-VLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
|+|+ |+.+-..|-..=+-.|.+.|.++||+|..+=+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5665 66667779999999999999999999998766433
No 398
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.16 E-value=61 Score=27.58 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=60.3
Q ss_pred ccCHHHHHHHHHHH-HhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCC----------CCCCC-------C-Ccc
Q 012194 24 QGHINPLLQFAKRL-DHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDG----------YDQGG-------S-AQA 84 (468)
Q Consensus 24 ~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~----------~~~~~-------~-~~~ 84 (468)
.+.+.-.+..|+.| .+.|.+|.+.-+. ....+++. . ++....++.. ....+ + ...
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~----~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH----V-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh----C-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccccc
Confidence 36677888999999 7889999887764 33344432 1 4555555311 00000 0 001
Q ss_pred ccHHHHHHHHHH-------hchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcccc
Q 012194 85 ESIEAYLEKFWQ-------IGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 85 ~~~~~~~~~~~~-------~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~~ 146 (468)
.+.....+.+.. .....+...+.++...+ +|+||.+. .+..+|+++|+|++.+.+..
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G--~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEG--VDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT----EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcC--CcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 122222222211 13456778888877653 89999995 35788999999999987644
No 399
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.07 E-value=50 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCcc
Q 012194 31 LQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 31 l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
+..|..|+++|++|+++-..+.
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678899999999999976543
No 400
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.06 E-value=2.8e+02 Score=24.34 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=31.8
Q ss_pred hhhHhHhhhcC--CCCceEEEEecCcCCCCHHHHHHHHHHHHhC-CCeEE
Q 012194 267 NESCIKWLNDR--AKGSVVYVSFGSYAPLKVEEMEELAWGLKAT-NQYFL 313 (468)
Q Consensus 267 ~~~~~~~l~~~--~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~-~~~~i 313 (468)
.+.+.+++... ....++||...|. ...+....+.+++.+. +..+.
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~ 64 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVS 64 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEE
Confidence 45566666654 3456888877766 4567788889999999 87654
No 401
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=33.94 E-value=1e+02 Score=28.15 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=36.9
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEc
Q 012194 14 VHCLVLSYP---AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAI 72 (468)
Q Consensus 14 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~ 72 (468)
||..|++.| +-|-=.-.-.|++.|..||++|+..=.+.+.+.-.-.+++...|--|..-
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~ 62 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTD 62 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-T
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEec
Confidence 577788765 44666778899999999999999988777665554444455556555543
No 402
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.79 E-value=55 Score=32.33 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=25.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|||.|+..|..| +.+|..|+++||+|+.+-..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 578888766666 67889999999999987643
No 403
>CHL00194 ycf39 Ycf39; Provisional
Probab=33.74 E-value=58 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=23.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|||+++ |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 577765 4445443 34788899999999998743
No 404
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.70 E-value=58 Score=30.31 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=24.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
+|++... .|-+- ..|+++|.++||+|+.+.....
T Consensus 2 ~ILVtG~--tGfiG--~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGG--AGFIG--SHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcC--cccHH--HHHHHHHHhCCCeEEEEeCCCc
Confidence 4554443 44444 7899999999999999886433
No 405
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.55 E-value=92 Score=29.23 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=46.8
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCC
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCG 361 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG 361 (468)
.+.++--|......+...++.+.+++.+..+.+....... ....+. .......+++ +|--||
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~--~~~~~a--------------~~~~~~~~d~--vvv~GG 73 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAH--DARHLV--------------AAALAKGTDA--LVVVGG 73 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHH--HHHHHH--------------HHHHhcCCCE--EEEECC
Confidence 4445544433323456777888888888765433322100 000100 0112233466 999999
Q ss_pred cchHHHHH----HcCCceeeccc
Q 012194 362 WNSTMEAL----SLGVPMVAMPQ 380 (468)
Q Consensus 362 ~~s~~Eal----~~GvP~l~~P~ 380 (468)
=||+.|++ ..++|+-++|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeC
Confidence 99999987 34789999995
No 406
>PRK04328 hypothetical protein; Provisional
Probab=33.45 E-value=3.3e+02 Score=24.64 Aligned_cols=44 Identities=16% Similarity=-0.087 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
..-+++...++.|--.-.++++.+-+++|+.+.|++.+...+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 45567777788899888888777766789999999987665443
No 407
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.41 E-value=3.3e+02 Score=24.46 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=52.4
Q ss_pred hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHH
Q 012194 268 ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEV 347 (468)
Q Consensus 268 ~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~l 347 (468)
+.+.+|+.. .+.++||-.-|......+....+.++++++|..+...- . +++ ..+.
T Consensus 22 ~~~~~~~~~--~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~-~------~~d----------------~~~~ 76 (233)
T PRK05282 22 PLIAELLAG--RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIH-R------VAD----------------PVAA 76 (233)
T ss_pred HHHHHHHcC--CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEec-c------chh----------------hHHH
Confidence 344556553 34599998777655456667889999999998754221 1 011 1355
Q ss_pred hcccCcceeeecCCcc--------------hHHHHHHcCCceeecc
Q 012194 348 LAHEAAGCFLTHCGWN--------------STMEALSLGVPMVAMP 379 (468)
Q Consensus 348 L~~~~~~~~I~HgG~~--------------s~~Eal~~GvP~l~~P 379 (468)
|..+++ ++--||-. -+.|++..|+|.+..-
T Consensus 77 l~~ad~--I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 77 IENAEA--IFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred HhcCCE--EEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 667776 66656522 2446777888876643
No 408
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.36 E-value=99 Score=29.64 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=61.6
Q ss_pred CcEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHH
Q 012194 13 LVHCLVLSYPAQ--GHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAY 90 (468)
Q Consensus 13 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~ 90 (468)
.+||.+++.|+. |=-+-..++.+.+..+|.+|.-+-. .+.-.++-. .-.+.-..+..-...++......-...
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~-Gy~GL~~~~----i~~l~~~~v~~~~~~GGT~lgssR~~~ 76 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN-GYLGLLEGD----IKPLTREDVDDLINRGGTFLGSARFPE 76 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec-chhhhcCCc----ceeccccchhHHHhcCCeEEeeCCCCC
Confidence 469999888865 7777888999999999999986653 333333310 001111111100000000000000000
Q ss_pred HHHHHHhchHHHHHHHHHhcCCCCCccEEE---eCCCcchHHHHHHHcCCceEEE
Q 012194 91 LEKFWQIGPRSLCELVEKMNGSVVPVDCIV---YDSFLPWALDVAKKFGLVGAAF 142 (468)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI---~D~~~~~~~~~A~~lgiP~i~~ 142 (468)
+ ...+.....++.+.+. ..|.+| -|..+..+..+++..++|+|.+
T Consensus 77 ---~--~~~e~~~~~~~~l~~~--gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 77 ---F--KTEEGRKVAAENLKKL--GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred ---c--ccHHHHHHHHHHHHHc--CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 0 0111122344444443 356666 3555677999999999999984
No 409
>CHL00067 rps2 ribosomal protein S2
Probab=33.16 E-value=1.4e+02 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=23.5
Q ss_pred CccEEEe-CCCc-chHHHHHHHcCCceEEEcccc
Q 012194 115 PVDCIVY-DSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 115 p~DlVI~-D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
.||+||+ |+.. ..+..=|.++|||+|.+.-+.
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 3588775 5444 458888999999999986544
No 410
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=33.06 E-value=1.6e+02 Score=25.39 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=45.6
Q ss_pred cccccchhHHHHHHHhhhcceeEecC----C-----CCCccCHHHHH----HHHHHHhcCccHHHHHHHHHHHHHHHHHH
Q 012194 378 MPQWSDQSTNGKYIMDVWKMGLKVPA----D-----EKGIVRREAIA----HCISEILEGERGKEIRQNAGKWSNFAKEA 444 (468)
Q Consensus 378 ~P~~~DQ~~na~~l~~~~g~G~~l~~----~-----~~~~~~~~~l~----~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (468)
.|...||...-..+-+.+.+|+.-.. . .=..++++.+. +.|.++|.|+ .+-+|-+|+.+.+.+|
T Consensus 23 ~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~---~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 23 VPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA---GIIRHRGKIQAIIGNA 99 (187)
T ss_pred CcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc---hhHHhHHHHHHHHHHH
Confidence 55677887766655444477774211 0 00156666664 6788899987 5555555554444432
Q ss_pred ------HHcCCCcHHHHHHH
Q 012194 445 ------VAKGGSSDKNIDDF 458 (468)
Q Consensus 445 ------~~~~g~~~~~~~~~ 458 (468)
.+++||-.+++=.|
T Consensus 100 ~~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 100 RAYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHhcCCHHHHHhhc
Confidence 34577767777555
No 411
>PRK08309 short chain dehydrogenase; Provisional
Probab=33.03 E-value=62 Score=27.65 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|+++++. ++ | +. -++++.|.++|++|++.+-.
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEECC
Confidence 4555443 43 5 33 35999999999999987643
No 412
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=33.03 E-value=60 Score=32.14 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.|||.|+..|-.| +.+|..|+++||+|+.+-..
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 4789888666555 56899999999999988653
No 413
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.97 E-value=1.6e+02 Score=30.55 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.8
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 66 ~~gv--~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 66 KVGV--AIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998855 7889999999999873
No 414
>PTZ00445 p36-lilke protein; Provisional
Probab=32.93 E-value=1.7e+02 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcc
Q 012194 103 CELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 103 ~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~ 144 (468)
+.++++..- .|-+++..|-. ..-...|+++|+-.+.+..
T Consensus 168 e~ll~~~gl--~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 168 KQVCSDFNV--NPDEILFIDDD-MNNCKNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHHcCC--CHHHeEeecCC-HHHHHHHHHCCCEEEEcCC
Confidence 555555432 34488999965 4578889999999998653
No 415
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.88 E-value=1.1e+02 Score=25.65 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEe
Q 012194 26 HINPLLQFAKRLDH-KGLKVTLVT 48 (468)
Q Consensus 26 H~~p~l~La~~L~~-rGh~Vt~~~ 48 (468)
|.....+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888999999988 555554443
No 416
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=32.81 E-value=67 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
..++|+++-.+-.| +..|..|+++|++|+++...
T Consensus 17 ~~~~VvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAG-----LAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHH-----HHHHHHHHHCCCcEEEEeCC
Confidence 35789888777333 67888999999999998754
No 417
>PRK13695 putative NTPase; Provisional
Probab=32.76 E-value=2.7e+02 Score=23.30 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEE
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVT 45 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt 45 (468)
|||++...++.|=-.=+..+++.|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 78999988888888888888999988898865
No 418
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=32.73 E-value=74 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+..+|+++++|+. +...+..++.|.+.|.+++++...
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 4568999998877 466799999999999999887653
No 419
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.73 E-value=1.2e+02 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.8
Q ss_pred ccEEEeCCCcchHHHHHHHcCCceEEEc
Q 012194 116 VDCIVYDSFLPWALDVAKKFGLVGAAFL 143 (468)
Q Consensus 116 ~DlVI~D~~~~~~~~~A~~lgiP~i~~~ 143 (468)
+|++|.+.. ...+|+++|+|++.++
T Consensus 373 ~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 373 IDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCEEEECch---hHHHHHHcCCCEEEec
Confidence 599999954 5688999999998764
No 420
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.62 E-value=51 Score=31.32 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
|||.++..|+.|- .+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G~-----ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGT-----AIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEecC
Confidence 6888888887764 6788999999999988863
No 421
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.56 E-value=57 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.|||.|+..|..| ..+|..|.++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4799999888777 46889999999999998874
No 422
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=32.55 E-value=75 Score=31.31 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSY--PAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+|+|+.+.. ||-|-..-.+.||..|+.+|++|.++=.+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 567665443 56699999999999999999999887543
No 423
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.54 E-value=1.4e+02 Score=27.43 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHhchHHHHHHHH
Q 012194 28 NPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQIGPRSLCELVE 107 (468)
Q Consensus 28 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (468)
.-+..|++.|.++|++|.+++.+...+..++. ... ++. .....+... ..+.++..
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i----~~~-----~~~-~~~~~~~~~---------------~~l~e~~~ 194 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEI----AAA-----LGG-PRVVNLAGK---------------TSLRELAA 194 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHH----HHh-----cCC-CccccCcCC---------------CCHHHHHH
Confidence 35889999999999999998877655444421 000 000 000000000 01223333
Q ss_pred HhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEccc
Q 012194 108 KMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQ 145 (468)
Q Consensus 108 ~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~~ 145 (468)
-+.. -|++|+-- .+...+|..+|+|++.++..
T Consensus 195 li~~----~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 195 LLAR----ADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHh----CCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 3322 48888653 35788899999999988653
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=32.51 E-value=1.9e+02 Score=29.31 Aligned_cols=46 Identities=11% Similarity=-0.028 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+..-+++...++.|--.=.++++.+.+++|.+|.|++.+...+.+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 4456778888899999999999999999999999999887765554
No 425
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=32.51 E-value=3e+02 Score=26.81 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=53.4
Q ss_pred HHHhcccCcceeeecCCcchHHHHHHcCCceeecccccchhHHHHHHHhhhcce-eEecCCCCCccCHHHHHHHHHHHhc
Q 012194 345 LEVLAHEAAGCFLTHCGWNSTMEALSLGVPMVAMPQWSDQSTNGKYIMDVWKMG-LKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~l~~~~g~G-~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
..++++|++ +|. .-+=++.-|++.|+|.+++-. |+.+....+++ |+- ..++.. .++.+.+.+.+.+.+.
T Consensus 280 ~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~-gl~~~~~~i~---~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACDL--IVG-MRLHSAIMALAFGVPAIAIAY---DPKVRGLMQDL-GLPGFAIDID---PLDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEee---cHHHHHHHHHc-CCCcccccCC---CCchHHHHHHHHHHHh
Confidence 468889998 774 245588899999999998875 45555666667 663 445555 8899999999999887
Q ss_pred Cc
Q 012194 424 GE 425 (468)
Q Consensus 424 ~~ 425 (468)
+-
T Consensus 350 ~~ 351 (385)
T COG2327 350 KL 351 (385)
T ss_pred cc
Confidence 63
No 426
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=32.50 E-value=93 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.2
Q ss_pred CcEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYP-AQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+.-|++++-+ -.+...+.....++|.++|++|.|+++.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4567888887 5799999999999999999999999987
No 427
>PRK08939 primosomal protein DnaI; Reviewed
Probab=32.17 E-value=50 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
...++++..+|.|-..=+.++|.+|.++|+.|+|++.+.+...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 346888888888999999999999999999999999876655555
No 428
>PRK13057 putative lipid kinase; Reviewed
Probab=32.08 E-value=76 Score=29.48 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHH----HcC
Q 012194 297 EMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEAL----SLG 372 (468)
Q Consensus 297 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal----~~G 372 (468)
....+.+.+.+.+..+....... +.+ ...++- ++....++ +|.-||=||+.|++ ..+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~-----~~~----------a~~~~~--~~~~~~d~--iiv~GGDGTv~~v~~~l~~~~ 74 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAED-----PDD----------LSEVIE--AYADGVDL--VIVGGGDGTLNAAAPALVETG 74 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCC-----HHH----------HHHHHH--HHHcCCCE--EEEECchHHHHHHHHHHhcCC
Confidence 45667777888877654333221 011 001111 13445567 99999999999986 347
Q ss_pred Cceeeccc
Q 012194 373 VPMVAMPQ 380 (468)
Q Consensus 373 vP~l~~P~ 380 (468)
+|+-++|.
T Consensus 75 ~~lgiiP~ 82 (287)
T PRK13057 75 LPLGILPL 82 (287)
T ss_pred CcEEEECC
Confidence 89999995
No 429
>PLN02778 3,5-epimerase/4-reductase
Probab=31.85 E-value=57 Score=30.49 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEE
Q 012194 11 CRLVHCLVLSYPAQ-GHINPLLQFAKRLDHKGLKVTL 46 (468)
Q Consensus 11 ~~~~~il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~ 46 (468)
...|||++....++ |+ .|++.|.++||+|++
T Consensus 7 ~~~~kiLVtG~tGfiG~-----~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 7 SATLKFLIYGKTGWIGG-----LLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCeEEEECCCCHHHH-----HHHHHHHhCCCEEEE
Confidence 44689887765444 43 467889999999975
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=31.80 E-value=92 Score=30.29 Aligned_cols=43 Identities=30% Similarity=0.296 Sum_probs=34.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
.=+++..-++.|--.=+++++..++.+|.+|.|++.+...+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 3456677778899999999999999999999999887654433
No 431
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=31.71 E-value=82 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=31.7
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 15 HCLVLSYP--AQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 15 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
+|.++++| +-|-..-..+|+-.|+.+|++|.++-.+-.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 67777766 448999999999999999999999887643
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.62 E-value=90 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
..-+++...++.|--.-.+.++..-+++|+.|.|++.+...+.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 344566667788888888888887777899999999987765554
No 433
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.59 E-value=89 Score=28.54 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=23.1
Q ss_pred ccEEEeCCCc------chHHHHHHHcCCceEEEcc
Q 012194 116 VDCIVYDSFL------PWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 116 ~DlVI~D~~~------~~~~~~A~~lgiP~i~~~~ 144 (468)
||+|++...+ ..+..+|+.+|+|++.+..
T Consensus 113 ~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 7999976543 3478999999999998654
No 434
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.59 E-value=91 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHc-
Q 012194 293 LKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSL- 371 (468)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~- 371 (468)
.+.+..+.+.+++.+.+.+.||.+.+.... .++.++++...+-+++.. ||=+....+++-+++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga-------------~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l~~~ 110 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGA-------------NRLLPYLDYDLIRANPKI--FVGYSDITALHLALYAK 110 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCH-------------HHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHHHHh
Confidence 356778889999999999999998765221 235566666666666666 7777777777777754
Q ss_pred -CCceeeccc
Q 012194 372 -GVPMVAMPQ 380 (468)
Q Consensus 372 -GvP~l~~P~ 380 (468)
|++.+-=|.
T Consensus 111 ~g~~t~hGp~ 120 (282)
T cd07025 111 TGLVTFHGPM 120 (282)
T ss_pred cCceEEECcc
Confidence 666665554
No 435
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.48 E-value=46 Score=29.68 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012194 26 HINPLLQFAKRLDHKGLKVTLVTTYF 51 (468)
Q Consensus 26 H~~p~l~La~~L~~rGh~Vt~~~~~~ 51 (468)
|+..|-..|++|.++||+|.++...+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45678899999999999999988643
No 436
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.36 E-value=1.1e+02 Score=25.33 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCC--CCccEEEeCCCc----------chHHHHHHHcCCceEEEcccc
Q 012194 102 LCELVEKMNGSV--VPVDCIVYDSFL----------PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 102 ~~~~l~~l~~~~--~p~DlVI~D~~~----------~~~~~~A~~lgiP~i~~~~~~ 146 (468)
++.++.++.... ..||+|++..-+ .-+..+|+++|+|++-.+.+.
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 455555544321 346999987643 226789999999999765443
No 437
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=31.33 E-value=3.3e+02 Score=23.23 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=54.3
Q ss_pred hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCc-cCCCCcchhhhccCCeEEEeecc-hH
Q 012194 268 ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESE-QAKLPENFSDETSQKGLVVNWCP-QL 345 (468)
Q Consensus 268 ~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~nv~~~~~vp-q~ 345 (468)
.++-+++.... ..+++-|. ..-.+..+.++..+.+-+++=+++..- ....+.. ..+..++++... ..
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~----~~~~~i~~~~~~~Rk 90 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQ----NLTELIEVNGMHERK 90 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCC----CCCceEEECCHHHHH
Confidence 34456776542 45566554 234666777777777777654442210 0011111 112334454444 33
Q ss_pred HHhcc-cCcceeeecCCcchHHHHHH---------cCCceeecc
Q 012194 346 EVLAH-EAAGCFLTHCGWNSTMEALS---------LGVPMVAMP 379 (468)
Q Consensus 346 ~lL~~-~~~~~~I~HgG~~s~~Eal~---------~GvP~l~~P 379 (468)
.+|-. +|+ +++-=||.||+-|.+. +.+|++++=
T Consensus 91 ~~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 91 AMMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 44444 444 4666789999988743 489998764
No 438
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=31.30 E-value=1e+02 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.0
Q ss_pred CCCceEEEEecCcCCCCHHHHHHHHHHHHhCC
Q 012194 278 AKGSVVYVSFGSYAPLKVEEMEELAWGLKATN 309 (468)
Q Consensus 278 ~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~ 309 (468)
+.+..+|+++||....+.+.++..+..+.+.+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 34558999999998666677777777777654
No 439
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.28 E-value=1.1e+02 Score=22.10 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|++...++.|=-.-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666677888889999999999999998877
No 440
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=31.26 E-value=2.1e+02 Score=26.61 Aligned_cols=23 Identities=39% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCccc
Q 012194 31 LQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 31 l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
.++|..++++|++|.+++.+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46788899999999999986554
No 441
>PRK12827 short chain dehydrogenase; Provisional
Probab=31.15 E-value=78 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
+.++|++.. +.|.+- ..+++.|.++||+|+++.
T Consensus 5 ~~~~ilItG--asg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 5 DSRRVLITG--GSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCEEEEEC--CCChHH--HHHHHHHHHCCCeEEEEc
Confidence 345665543 334443 578999999999998865
No 442
>PRK13055 putative lipid kinase; Reviewed
Probab=31.12 E-value=1.5e+02 Score=28.20 Aligned_cols=82 Identities=11% Similarity=-0.031 Sum_probs=44.6
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCC
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCG 361 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG 361 (468)
.|.++-.|...........+...+.+.+..+.+........ ....+. +.......++ +|--||
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~-~a~~~~--------------~~~~~~~~d~--vvv~GG 68 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPN-SAKNEA--------------KRAAEAGFDL--IIAAGG 68 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCc-cHHHHH--------------HHHhhcCCCE--EEEECC
Confidence 34444444332234456677777888877654332111000 000100 0111233466 999999
Q ss_pred cchHHHHHHc------CCceeeccc
Q 012194 362 WNSTMEALSL------GVPMVAMPQ 380 (468)
Q Consensus 362 ~~s~~Eal~~------GvP~l~~P~ 380 (468)
=||+.|++.. .+|+-++|.
T Consensus 69 DGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 69 DGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999998743 478888995
No 443
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=30.99 E-value=1.9e+02 Score=30.17 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.6
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998855 6778999999999985
No 444
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.97 E-value=98 Score=26.92 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
-|+|+...+-|-..-...||..+..+|.+|.+++.+.++.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 3566777788999999999999999999999999987763
No 445
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.94 E-value=85 Score=29.75 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
+--|+|+..-+.|-..-.-.||+.|.+.|++|.++..+.|++-+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi 183 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI 183 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH
Confidence 345678889999999999999999999999999999999986543
No 446
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=30.92 E-value=1.9e+02 Score=29.00 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=41.5
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEE
Q 012194 14 VHCLVLSYP---AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALE 70 (468)
Q Consensus 14 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~ 70 (468)
+|.+|+|.| +-|-=.-.-.||..|.+||++||..=-+.+.+.-.-.+++...|--|.
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfV 60 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFV 60 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEE
Confidence 467787766 447778889999999999999999988777655554444544454444
No 447
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=30.88 E-value=61 Score=31.24 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=51.2
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCCCCccccHHHHHHHHHHh
Q 012194 18 VLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGGSAQAESIEAYLEKFWQI 97 (468)
Q Consensus 18 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (468)
|+..|+.|..+-...++++..++|+.|.++...+..+..- .-.+.+..-|....+ ...+-.+.
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd~~------v~~v~~~GsP~v~~E----~lp~g~e~------- 77 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPDDDL------VVPVGMMGSPTVSVE----KLPSGDEA------- 77 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SSE-------EEEEEEEE-HHHTT-----SS-HHHHH-------
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCCCc------EeEEEEeCCChHHhc----cCCCchHH-------
Confidence 4567788998888899999999999999999876643221 002333333311111 11111111
Q ss_pred chHHHHHHHHHhcCCCCCccEEEeCCCc----chHHHHHHHcCCceE
Q 012194 98 GPRSLCELVEKMNGSVVPVDCIVYDSFL----PWALDVAKKFGLVGA 140 (468)
Q Consensus 98 ~~~~~~~~l~~l~~~~~p~DlVI~D~~~----~~~~~~A~~lgiP~i 140 (468)
...++. +++.. .+++|.|+.-... ..++.+|.++|+|+|
T Consensus 78 -~~a~~~-le~~~--g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvv 120 (353)
T PF06032_consen 78 -LRAVEA-LEKYL--GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVV 120 (353)
T ss_dssp -HHHHHH-HHHHT--T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEE
T ss_pred -HHHHHH-HHHhh--CCCccEEeehhcCccchhHHHHHHHHhCCCEE
Confidence 112222 23332 2568999986543 447788999999988
No 448
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=30.88 E-value=45 Score=32.53 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
.+--|+++++|..|+-.-.-.++.+|+.+|+-|..+-+.+..
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgS 139 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGS 139 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCc
Confidence 456799999999999999999999999999999998887654
No 449
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=30.86 E-value=62 Score=32.52 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.+||++...|+.+ .+=...|.++|.++|++|.++.++...+++.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 4688876655444 4478899999999999999999988777766
No 450
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.80 E-value=2.7e+02 Score=26.07 Aligned_cols=90 Identities=9% Similarity=-0.059 Sum_probs=51.2
Q ss_pred hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecc---h
Q 012194 268 ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCP---Q 344 (468)
Q Consensus 268 ~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp---q 344 (468)
.++.......+-+++-+-........+...+..+.++++++|..+++-+|..... -... .....| .
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~---~~~~--------~~~~~p~~~~ 184 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG---AGLE--------KGHSDPLYLD 184 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC---cccc--------cCCCCchHHH
Confidence 3455555543323222223233333445568899999999999998866543211 0000 001223 2
Q ss_pred HHHhcccCcceeeecCC--cchHHHH
Q 012194 345 LEVLAHEAAGCFLTHCG--WNSTMEA 368 (468)
Q Consensus 345 ~~lL~~~~~~~~I~HgG--~~s~~Ea 368 (468)
.-.-..+++++++.|.| ..=..|+
T Consensus 185 ~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 185 DVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred HHHHHCCCCcEEEEecCCCCchhHHH
Confidence 34555789999999999 6666666
No 451
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=30.57 E-value=93 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCCcc-------hHHHHHHHcCCceEEEcc
Q 012194 101 SLCELVEKMNGSVVPVDCIVYDSFLP-------WALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 101 ~~~~~l~~l~~~~~p~DlVI~D~~~~-------~~~~~A~~lgiP~i~~~~ 144 (468)
.+.++++++. .++|+|++|.... .|..++-.+++|+|.+.=
T Consensus 78 ~~l~~l~~l~---~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 78 CILEALEKLK---NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp HHHHHHHTSS---S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEES
T ss_pred HHHHHHHHhc---ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeC
Confidence 4445555554 3469999998652 256777888999999753
No 452
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=30.54 E-value=2.6e+02 Score=25.89 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHHHHc---
Q 012194 295 VEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEALSL--- 371 (468)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Eal~~--- 371 (468)
.+....+...+.+.+..+.+....... .. ..+ +. ...-..+++ +|.-||=||+.|++..
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~-~~-~~~-------------~~-~~~~~~~d~--ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKG-DA-ARY-------------VE-EARKFGVDT--VIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcc-cH-HHH-------------HH-HHHhcCCCE--EEEECCCChHHHHHHHHhc
Confidence 455667777888888765443322100 00 000 01 111234566 9999999999997643
Q ss_pred --CCcee-eccc
Q 012194 372 --GVPMV-AMPQ 380 (468)
Q Consensus 372 --GvP~l-~~P~ 380 (468)
..|.+ ++|.
T Consensus 80 ~~~~~~lgiiP~ 91 (293)
T TIGR00147 80 LDDIPALGILPL 91 (293)
T ss_pred CCCCCcEEEEcC
Confidence 34444 4885
No 453
>PRK08181 transposase; Validated
Probab=30.50 E-value=56 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccccc
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSL 56 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 56 (468)
+..+++|+..+|.|--.=..+++.++.++|+.|.|++.......+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 345788888888888888888999999999999888865544433
No 454
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=30.48 E-value=2.5e+02 Score=28.99 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.4
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeec
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAM 378 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~ 378 (468)
++.+ +++|.|-| .+.+|...++|+|++
T Consensus 71 ~~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 71 RPGI--CFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CCEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 4555 99998865 678999999999987
No 455
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.45 E-value=2.3e+02 Score=24.57 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=70.2
Q ss_pred eEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEeecchHHHhcccCcceeeecCC
Q 012194 282 VVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVNWCPQLEVLAHEAAGCFLTHCG 361 (468)
Q Consensus 282 ~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG 361 (468)
+.++...... .+.++-..+.+.+.+.+..+|+..|.- .-+.+.|.++.+.+++-. ||++ .=.++|
T Consensus 53 t~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGyM--rIL~~~fl~~~~grIlNI----------HPSL--LP~f~G 117 (200)
T COG0299 53 TVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGYM--RILGPEFLSRFEGRILNI----------HPSL--LPAFPG 117 (200)
T ss_pred EEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcchH--HHcCHHHHHHhhcceEec----------Cccc--ccCCCC
Confidence 4444443332 134566668888999888877665432 235566655554433221 7888 889999
Q ss_pred cchHHHHHHcCCceeecccc--cchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 362 WNSTMEALSLGVPMVAMPQW--SDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 362 ~~s~~Eal~~GvP~l~~P~~--~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
..+..+|+.+|+..-.+-.+ .+..+-.--+.+. .+.+... + |.|.|.+.|.+.
T Consensus 118 ~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~---~Vpv~~~---D-t~etl~~RV~~~ 172 (200)
T COG0299 118 LHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA---AVPVLPG---D-TAETLEARVLEQ 172 (200)
T ss_pred chHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE---eeeecCC---C-CHHHHHHHHHHH
Confidence 99999999999998554432 2222222222222 2222222 2 788888888663
No 456
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=30.39 E-value=56 Score=28.95 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=23.0
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 14 VHCLVLS-YPAQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 14 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
|||.|+- .|..| ..+++.|.++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 6788774 44444 3688999999999998754
No 457
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=30.13 E-value=6e+02 Score=25.81 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=82.6
Q ss_pred CceEEEEecCcCC-CCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCc---chhhhccCCeEEEeecchH---HHhcccC
Q 012194 280 GSVVYVSFGSYAP-LKVEEMEELAWGLKATNQYFLWVVRESEQAKLPE---NFSDETSQKGLVVNWCPQL---EVLAHEA 352 (468)
Q Consensus 280 ~~~I~is~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~nv~~~~~vpq~---~lL~~~~ 352 (468)
+++++..-|.... -..+.+...+.-+.+.+.++++...++ ..+-. ++.++.++++.+.-|.... .+++-+|
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD 370 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGAD 370 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCC
Confidence 3345544454443 235666666666666666766444331 11111 2345567888888776643 7888888
Q ss_pred cceeeec-----CCcchHHHHHHcCCceeeccccc------chhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 353 AGCFLTH-----CGWNSTMEALSLGVPMVAMPQWS------DQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 353 ~~~~I~H-----gG~~s~~Eal~~GvP~l~~P~~~------DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
+ ++.= ||. |=.+|+.+|.+-|+.+..+ |-..++ .... |.|..... .+++++..++.+.
T Consensus 371 ~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-----~~~~~l~~al~rA 439 (487)
T COG0297 371 V--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-----TNPDHLANALRRA 439 (487)
T ss_pred E--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-----CCHHHHHHHHHHH
Confidence 8 6653 343 5568999999888888753 333333 5666 77888874 3999999999987
Q ss_pred hc
Q 012194 422 LE 423 (468)
Q Consensus 422 l~ 423 (468)
+.
T Consensus 440 ~~ 441 (487)
T COG0297 440 LV 441 (487)
T ss_pred HH
Confidence 73
No 458
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=30.07 E-value=63 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 28 NPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 28 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
.|.+.|+++|.++|.+|.+.=+--......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHH
Confidence 799999999999999998877654444443
No 459
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=30.00 E-value=71 Score=30.41 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=31.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 19 LSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 19 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
++.|+.|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 67889999999999999999999999999986654
No 460
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.79 E-value=4.2e+02 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHhhhcceeEecCCCCCc-cCHHHHHHHH
Q 012194 381 WSDQSTNGKYIMDVWKMGLKVPADEKGI-VRREAIAHCI 418 (468)
Q Consensus 381 ~~DQ~~na~~l~~~~g~G~~l~~~~~~~-~~~~~l~~~i 418 (468)
.+.+.+|...+++. ++...+.++.-+. -+.+.+..+-
T Consensus 182 Pfs~~~n~all~q~-~id~vItK~SG~~Gg~~~Ki~aA~ 219 (257)
T COG2099 182 PFSEEDNKALLEQY-RIDVVVTKNSGGAGGTYEKIEAAR 219 (257)
T ss_pred CcChHHHHHHHHHh-CCCEEEEccCCcccCcHHHHHHHH
Confidence 35678888889988 9988888773222 4555565554
No 461
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=29.75 E-value=57 Score=31.97 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=22.1
Q ss_pred ccCHHHHH---HHHHHHHhCCCeEEEEeCCcc
Q 012194 24 QGHINPLL---QFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 24 ~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~ 52 (468)
-||+.|++ .+++-++.+||+|.|+|+.+-
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 39999877 567888889999999887654
No 462
>PRK07236 hypothetical protein; Provisional
Probab=29.66 E-value=59 Score=31.69 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=29.1
Q ss_pred cCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 10 SCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+|+.++|+++..|-.| +.+|..|+++|++|+++--.
T Consensus 3 ~~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 3 HMSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEecC
Confidence 4667899998877444 78899999999999998743
No 463
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=29.65 E-value=1.7e+02 Score=26.08 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=23.4
Q ss_pred CccEEE-eCCCc-chHHHHHHHcCCceEEEcccc
Q 012194 115 PVDCIV-YDSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 115 p~DlVI-~D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
.||+|| .|+.. ..+..=|.++|||+|.+.-+.
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 358877 45543 557888999999999976544
No 464
>PLN02727 NAD kinase
Probab=29.59 E-value=90 Score=33.98 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHhcccCcceeeecCCcchHHHHHHc----CCceeecccccchhHHHHHHHhhhcceeEecCCCCCccCHHHHHHHHHHH
Q 012194 346 EVLAHEAAGCFLTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNGKYIMDVWKMGLKVPADEKGIVRREAIAHCISEI 421 (468)
Q Consensus 346 ~lL~~~~~~~~I~HgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~l~~~~g~G~~l~~~~~~~~~~~~l~~~i~~l 421 (468)
++...+++ +|+=||=||++.|... ++|+|.+-.. .+|. |. +++.+++.+.|.++
T Consensus 739 el~~~~DL--VIvLGGDGTlLrAar~~~~~~iPILGINlG--------------rLGF-LT-----di~~ee~~~~L~~I 796 (986)
T PLN02727 739 DLHERVDF--VACLGGDGVILHASNLFRGAVPPVVSFNLG--------------SLGF-LT-----SHYFEDFRQDLRQV 796 (986)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEeCC--------------Cccc-cc-----cCCHHHHHHHHHHH
Confidence 34456788 9999999999999775 6787766422 1232 22 45788899999999
Q ss_pred hcC
Q 012194 422 LEG 424 (468)
Q Consensus 422 l~~ 424 (468)
+++
T Consensus 797 l~G 799 (986)
T PLN02727 797 IHG 799 (986)
T ss_pred HcC
Confidence 977
No 465
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.59 E-value=82 Score=25.27 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=33.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
+|++-+..+.+|-.----++..|...|++|..+......+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e 40 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQE 40 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 5788999999999998888889999999999887655433
No 466
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.33 E-value=83 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 29 PLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 29 p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
--+.+|..|+++|.+|+++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457899999999999999987644
No 467
>PLN02891 IMP cyclohydrolase
Probab=29.16 E-value=92 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=31.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
.|.|+..+-=.| +..+|+.|.+.|+++ +++..-...+++. |+....+.
T Consensus 23 krALISVsDKtg----i~~fAk~L~~~gveI--iSTgGTak~L~e~------Gi~v~~Vs 70 (547)
T PLN02891 23 KQALISLSDKTD----LALLANGLQELGYTI--VSTGGTASALEAA------GVSVTKVE 70 (547)
T ss_pred cEEEEEEecccC----HHHHHHHHHHCCCEE--EEcchHHHHHHHc------CCceeeHH
Confidence 445544333333 678999999987665 5665555566643 78888775
No 468
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.07 E-value=64 Score=27.23 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcC
Q 012194 21 YPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAIS 73 (468)
Q Consensus 21 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~ 73 (468)
.|+.|++-- .++++|.++||+|+.++-... ...+ ..+++.....
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~--~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPS--KAED-----SPGVEIIQGD 47 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGG--GHHH-----CTTEEEEESC
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCch--hccc-----ccccccceee
Confidence 355565543 589999999999999996543 2221 2366666554
No 469
>PRK13236 nitrogenase reductase; Reviewed
Probab=28.98 E-value=94 Score=29.09 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=30.3
Q ss_pred cEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 14 VHCL-VLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
||++ |+.=|+-|--.-.+.||..|+++|++|.++=.+
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 5655 555667799999999999999999999998544
No 470
>PRK04940 hypothetical protein; Provisional
Probab=28.96 E-value=1.3e+02 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=24.7
Q ss_pred cEEEeCCCc-chHHHHHHHcCCceEEEcccc
Q 012194 117 DCIVYDSFL-PWALDVAKKFGLVGAAFLTQS 146 (468)
Q Consensus 117 DlVI~D~~~-~~~~~~A~~lgiP~i~~~~~~ 146 (468)
++||-..+. .+|..+|+++|+|.|.+.|+-
T Consensus 62 ~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 62 PLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred cEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 678777666 779999999999999986644
No 471
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=28.93 E-value=88 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 012194 14 VHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFIS 53 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 53 (468)
|+|+++. .|++- -.||.+|...||+|++.+.....
T Consensus 2 ~~~~i~G---tGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIG---TGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEec---cChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 4455544 44443 47889999999999999765443
No 472
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.86 E-value=4.2e+02 Score=27.52 Aligned_cols=59 Identities=7% Similarity=-0.022 Sum_probs=36.9
Q ss_pred eeecCCcchHHHH--HHcCCceeecccccchhHHHHHHHhhhcc-eeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 356 FLTHCGWNSTMEA--LSLGVPMVAMPQWSDQSTNGKYIMDVWKM-GLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 356 ~I~HgG~~s~~Ea--l~~GvP~l~~P~~~DQ~~na~~l~~~~g~-G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
++.+||+|.+... ..++-+..... ....++.++..+.. |+ |..+. +.++|.+++++.+.
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~~-~~~~~d~~~~A~a~-G~~~~~v~-------~~~eL~~al~~a~~ 533 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHSY-MDSVPDFAKIAEAY-GHVGIRIS-------DPDELESGLEKALA 533 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCcccccC-CCCCCCHHHHHHHC-CCeEEEEC-------CHHHHHHHHHHHHh
Confidence 8889999877533 22333321111 11236678888888 86 44444 78899999988874
No 473
>PRK12829 short chain dehydrogenase; Provisional
Probab=28.75 E-value=99 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 11 CRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
++.+++++... .|.+- ..+++.|.++||+|+.+.-.
T Consensus 9 ~~~~~vlItGa--~g~iG--~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGG--ASGIG--RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCC--CCcHH--HHHHHHHHHCCCEEEEEeCC
Confidence 45567666533 34443 67799999999999877743
No 474
>PLN00016 RNA-binding protein; Provisional
Probab=28.73 E-value=72 Score=31.02 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=24.9
Q ss_pred CcEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLS--YPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.++|+++. .|+.|.+- ..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 46787761 23445444 45678999999999998854
No 475
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.69 E-value=1.2e+02 Score=30.30 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
+..|+|+..++.|-..-...||..|.++|++|.+++.+.++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 445677888888999999999999999999999999887765
No 476
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=28.60 E-value=1.7e+02 Score=27.83 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=54.5
Q ss_pred cEEEEEcCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCCcccc--ccccCCCCCCCCeEEEEcCCCCCCCCCCccccH
Q 012194 14 VHCLVLSYPAQG----HINPLLQFAKRLDHKGLKVTLVTTYFISK--SLHRDSSSSSASIALEAISDGYDQGGSAQAESI 87 (468)
Q Consensus 14 ~~il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~ 87 (468)
..|++.+.++.. -..-+..|++.|.++|++|.+++.+...+ .+++. ... ... . .
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i----~~~---------~~~-~-----~- 241 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEI----AQG---------CQT-P-----R- 241 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHH----Hhh---------CCC-C-----c-
Confidence 345565544321 12357799999998899999887654222 22211 000 000 0 0
Q ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceEEEcc
Q 012194 88 EAYLEKFWQIGPRSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (468)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i~~~~ 144 (468)
. ..+. ....+.++..-+.. -|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 242 --~-~~l~--g~~sL~el~ali~~----a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 242 --V-TSLA--GKLTLPQLAALIDH----ARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred --c-cccC--CCCCHHHHHHHHHh----CCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 0 0000 11123444444432 48999773 4578999999999998764
No 477
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=28.49 E-value=5.1e+02 Score=25.09 Aligned_cols=119 Identities=13% Similarity=0.231 Sum_probs=68.9
Q ss_pred hhHhHhhhcCCCCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeCCccCCCCcchhhhccCCeEEEe-e---cc
Q 012194 268 ESCIKWLNDRAKGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRESEQAKLPENFSDETSQKGLVVN-W---CP 343 (468)
Q Consensus 268 ~~~~~~l~~~~~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~nv~~~~-~---vp 343 (468)
++..+.++....+..-..++||... -.++.++++.|.+.+.++.+......+ .+ ...++.++++ + .+
T Consensus 5 ~~~~~~~~~y~~~~~~i~~~~shsa------L~I~~gAkeeGf~ti~v~~~~~~~~y~-~~--~~~De~i~v~~~~di~~ 75 (358)
T PRK13278 5 EEILEILKKYDLDNITIATIGSHSS------LQILKGAKKEGFRTIAICKKKREVFYK-RF--PVADEFIIVDDFSDILN 75 (358)
T ss_pred HHHHHHHHhcCcccceEEEEecccH------HHHHHHHHHCCCeEEEEEeCCCccccc-cc--cccceEEEEcchhhhcC
Confidence 4466677776555556678888765 347889999999988887654321111 11 1235566665 5 22
Q ss_pred h---HHHhcccCcceeeecCCcchH--HHHHH-cCCceeecc----cccchhHHHHHHHhhhcce
Q 012194 344 Q---LEVLAHEAAGCFLTHCGWNST--MEALS-LGVPMVAMP----QWSDQSTNGKYIMDVWKMG 398 (468)
Q Consensus 344 q---~~lL~~~~~~~~I~HgG~~s~--~Eal~-~GvP~l~~P----~~~DQ~~na~~l~~~~g~G 398 (468)
. ..+.+...+ +|.||..... .+-+. .|+|+..-+ ...|...--+.++++ |+-
T Consensus 76 ~~~~~~l~~~~~i--iIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~a-GIp 137 (358)
T PRK13278 76 EAVQEKLREMNAI--LIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEA-GIR 137 (358)
T ss_pred HHHHHHHhhcCcE--EEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHc-CCC
Confidence 2 244444555 8999764422 33333 788843322 345666666667777 543
No 478
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=28.45 E-value=6.3e+02 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.3
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 24 QGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 24 ~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
-|--.-...|++.|+++|++|..+=+-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 488888999999999999999977653
No 479
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.38 E-value=2.4e+02 Score=29.32 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.5
Q ss_pred ccCcceeeecCCcc------hHHHHHHcCCceeecc
Q 012194 350 HEAAGCFLTHCGWN------STMEALSLGVPMVAMP 379 (468)
Q Consensus 350 ~~~~~~~I~HgG~~------s~~Eal~~GvP~l~~P 379 (468)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 67 ~~gv--~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGC--VLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 89998866 5789999999999874
No 480
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.36 E-value=1.4e+02 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.8
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCccccccc
Q 012194 23 AQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLH 57 (468)
Q Consensus 23 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 57 (468)
..|+-..++.+++.++++|..|..+|........+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 66888999999999999999999999776665555
No 481
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.29 E-value=61 Score=30.41 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHhcccCcceeeecCCcchHHHHHH----cCCceeecccccch
Q 012194 346 EVLAHEAAGCFLTHCGWNSTMEALS----LGVPMVAMPQWSDQ 384 (468)
Q Consensus 346 ~lL~~~~~~~~I~HgG~~s~~Eal~----~GvP~l~~P~~~DQ 384 (468)
+.|..-++..+|.=||-+|..-|.. .|+|++.+|-+.|-
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDN 127 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDN 127 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccC
Confidence 4566667777999999999977753 79999999976543
No 482
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.20 E-value=1.4e+02 Score=27.57 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.2
Q ss_pred CcEE-EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 012194 13 LVHC-LVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISK 54 (468)
Q Consensus 13 ~~~i-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 54 (468)
++++ +|+..++-|-..-...||..|++.|++|.+++.+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3455 56666677999999999999999999999999886543
No 483
>COG4889 Predicted helicase [General function prediction only]
Probab=28.18 E-value=2.3e+02 Score=30.88 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=23.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 20 SYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 20 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
...+.|...-.|.|+++|++ .+|.|+++.
T Consensus 187 MAcGTGKTfTsLkisEala~--~~iL~LvPS 215 (1518)
T COG4889 187 MACGTGKTFTSLKISEALAA--ARILFLVPS 215 (1518)
T ss_pred EecCCCccchHHHHHHHHhh--hheEeecch
Confidence 34467889999999999987 788888876
No 484
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.11 E-value=1.9e+02 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCceEEEEecCcCCCCHHHHHHHHHHHHhCCCeEEEEEeC
Q 012194 279 KGSVVYVSFGSYAPLKVEEMEELAWGLKATNQYFLWVVRE 318 (468)
Q Consensus 279 ~~~~I~is~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 318 (468)
...+|+|.+||.-....+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3459999999998777888888888875 35777776543
No 485
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=28.08 E-value=8.3 Score=20.50 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=13.3
Q ss_pred CcchHHHHHHcCCceee
Q 012194 361 GWNSTMEALSLGVPMVA 377 (468)
Q Consensus 361 G~~s~~Eal~~GvP~l~ 377 (468)
|.|+++-.|+.|.|-++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888765
No 486
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=28.02 E-value=1e+02 Score=27.59 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=28.7
Q ss_pred cEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012194 14 VHCL-VLSYPAQGHINPLLQFAKRLDHKGLKVTLVT 48 (468)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 48 (468)
|+++ ++...+.|-..-+..|+++|.++|++|.++-
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5665 4445566989999999999999999999985
No 487
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=27.83 E-value=5e+02 Score=27.08 Aligned_cols=86 Identities=10% Similarity=0.195 Sum_probs=47.1
Q ss_pred eeeecCCcchHHHHHHc---CCceeecccccchh-HHHHHHHhhhcc--eeE---ecCCCCCccCHHHHHHHHHHHhcCc
Q 012194 355 CFLTHCGWNSTMEALSL---GVPMVAMPQWSDQS-TNGKYIMDVWKM--GLK---VPADEKGIVRREAIAHCISEILEGE 425 (468)
Q Consensus 355 ~~I~HgG~~s~~Eal~~---GvP~l~~P~~~DQ~-~na~~l~~~~g~--G~~---l~~~~~~~~~~~~l~~~i~~ll~~~ 425 (468)
.+|.=+|.-.-+-.+.+ -+|+|.+|....-. .....+.-. ++ |+. +..+ +..++.-+...|.. +.|+
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v~i~--~~~~aa~~a~~i~~-~~~~ 543 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATVAIG--NATNAGLLAVRMLG-ASDP 543 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEEecC--ChHHHHHHHHHHHh-cCCH
Confidence 39988886654444433 58999999854311 122222222 33 421 2211 13344444444422 3454
Q ss_pred cHHHHHHHHHHHHHHHHHHHHc
Q 012194 426 RGKEIRQNAGKWSNFAKEAVAK 447 (468)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~ 447 (468)
+++++.+..++.+++.+.+
T Consensus 544 ---~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 544 ---DLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred ---HHHHHHHHHHHHHHHHHHh
Confidence 8899999888888875444
No 488
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.82 E-value=4.5e+02 Score=27.10 Aligned_cols=98 Identities=8% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHHHHHhCCCeEEEEEeCCccCCCCcchh--hhccCCeEEEeecchHHHhcccCcceeeecCCcchHHHH--HHcCCcee
Q 012194 301 LAWGLKATNQYFLWVVRESEQAKLPENFS--DETSQKGLVVNWCPQLEVLAHEAAGCFLTHCGWNSTMEA--LSLGVPMV 376 (468)
Q Consensus 301 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HgG~~s~~Ea--l~~GvP~l 376 (468)
+-.++...+.+++..+|......-..++. .+..-|+++ + ++.+||+|.+... ..++.+..
T Consensus 411 iGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~i--------------v--V~NN~~~~~~~~~~~~~~~~~~~ 474 (548)
T PRK08978 411 IGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKI--------------V--LLDNQRLGMVRQWQQLFFDERYS 474 (548)
T ss_pred HHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEE--------------E--EEeCCccHHHHHHHHHHhCCcce
Confidence 44455666778888877654322111111 111122222 2 7888998876432 22332221
Q ss_pred ecccccchhHHHHHHHhhhcc-eeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 377 AMPQWSDQSTNGKYIMDVWKM-GLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 377 ~~P~~~DQ~~na~~l~~~~g~-G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
.. ...+.++.++..+.. |+ |..+. +.++|.+++++.+.
T Consensus 475 ~~-~~~~~~d~~~la~a~-G~~~~~v~-------~~~el~~al~~a~~ 513 (548)
T PRK08978 475 ET-DLSDNPDFVMLASAF-GIPGQTIT-------RKDQVEAALDTLLN 513 (548)
T ss_pred ec-CCCCCCCHHHHHHHC-CCeEEEEC-------CHHHHHHHHHHHHh
Confidence 11 111346788888877 76 34443 78899999988874
No 489
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=27.81 E-value=81 Score=20.92 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012194 412 EAIAHCISEILEGERGKEIRQNAGKWSNFAKEAVAKGGSSDKNIDDFVANLIS 464 (468)
Q Consensus 412 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 464 (468)
++|...+..+|+ .+..+-..++..+-..+++=|+.-+.+++-|.+|..
T Consensus 2 ~elt~~v~~lL~-----qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 2 QELTAFVQNLLQ-----QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467888888885 677788888888777777778877778887777764
No 490
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.78 E-value=1.1e+02 Score=29.48 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=33.3
Q ss_pred eEEEeecchH---HHhcccCcceeeecCCcchHHHHHHcCCcee--eccc
Q 012194 336 GLVVNWCPQL---EVLAHEAAGCFLTHCGWNSTMEALSLGVPMV--AMPQ 380 (468)
Q Consensus 336 v~~~~~vpq~---~lL~~~~~~~~I~HgG~~s~~Eal~~GvP~l--~~P~ 380 (468)
+.+.+++||. .+|-.||+ =+-. |==|+.-|..+|+|+| +.|+
T Consensus 244 ~~~LPf~~Q~~yD~LLW~cD~--NfVR-GEDSFVRAqWAgkPfvWhIYPQ 290 (371)
T TIGR03837 244 VAVLPFVPQDDYDRLLWACDL--NFVR-GEDSFVRAQWAGKPFVWHIYPQ 290 (371)
T ss_pred EEEcCCCChhhHHHHHHhChh--cEee-chhHHHHHHHcCCCceeecccC
Confidence 4456899875 89999999 5555 5679999999999996 5663
No 491
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=27.53 E-value=3.6e+02 Score=27.27 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred CchhhhhhhcCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCCCCCC
Q 012194 1 MENIEKKAASCRLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGYDQGG 80 (468)
Q Consensus 1 ~~~~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 80 (468)
++.|+.-...-...|++++..+ ...+.+++.|.+.|-+|..+........-.
T Consensus 312 ~~~l~~~~~~l~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~----------------------- 363 (475)
T PRK14478 312 WAALEPYRPRLEGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDK----------------------- 363 (475)
T ss_pred HHHHHHHHHHhCCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHH-----------------------
Q ss_pred CCccccHHHHHHHHHHhch--------HHHHHHHHHhcCCCCCccEEEeCCCcchHHHHHHHcCCceE
Q 012194 81 SAQAESIEAYLEKFWQIGP--------RSLCELVEKMNGSVVPVDCIVYDSFLPWALDVAKKFGLVGA 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~l~~~~~p~DlVI~D~~~~~~~~~A~~lgiP~i 140 (468)
+.+..... ....++.+.+.+. .| |++|.+ .....+|+++|||++
T Consensus 364 -----------~~l~~~~~~~~~v~~d~~~~e~~~~i~~~-~p-Dliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 364 -----------ERIKELMGPDAHMIDDANPRELYKMLKEA-KA-DIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred -----------HHHHHHcCCCcEEEeCCCHHHHHHHHhhc-CC-CEEEec---CchhhhhhhcCCCEE
No 492
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=27.51 E-value=1.1e+02 Score=26.62 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=28.9
Q ss_pred cEEEEEcCCCccCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 012194 14 VHCLVLSYPAQGHINPLLQ-FAKRLDH-KGLKVTLVTTY 50 (468)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~~ 50 (468)
|||+++-+..+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5888888777899998776 5666666 89999887753
No 493
>PRK13768 GTPase; Provisional
Probab=27.51 E-value=2.7e+02 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=30.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012194 15 HCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFI 52 (468)
Q Consensus 15 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 52 (468)
-|++...++.|--.-...++..|..+|++|.++..+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 44556666778888899999999999999999876543
No 494
>PRK07454 short chain dehydrogenase; Provisional
Probab=27.44 E-value=1.2e+02 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+||.++++.+ .|.+ =..++++|.++|++|+++.-.
T Consensus 5 ~~k~vlItG~-sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGA-SSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCC-CchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4566666544 3433 357889999999999988753
No 495
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.36 E-value=1.7e+02 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTT 49 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 49 (468)
+..||++++.++.+=-.-...+=+.+.++|.++.+-..
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45699999988775323334555566667888765444
No 496
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=27.32 E-value=88 Score=27.36 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 12 RLVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
+..+|+++..|.-| ...++.|.+.|++|+++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 34588888776544 56788999999999999864
No 497
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=27.29 E-value=83 Score=29.54 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012194 13 LVHCLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTY 50 (468)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 50 (468)
.++|++.. +.|++-. .|++.|.++||+|+.++-.
T Consensus 4 ~~~ilVtG--atGfIG~--~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTG--ASGYIAS--WLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CCEEEEEC--ChHHHHH--HHHHHHHHCCCEEEEEEcC
Confidence 45665543 3455553 4689999999999877643
No 498
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=27.24 E-value=5.5e+02 Score=24.44 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=38.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCccccccccCCCCCCCCeEEEEcCCCC
Q 012194 16 CLVLSYPAQGHINPLLQFAKRLDHKGLKVTLVTTYFISKSLHRDSSSSSASIALEAISDGY 76 (468)
Q Consensus 16 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~i~f~~~~~~~ 76 (468)
-+++...-.|...-++..++..+++|..|..+|.... +.+. +...+..+..+|.+.
T Consensus 80 dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~---L~~~--a~~~~~~~i~ip~~~ 135 (337)
T PRK08674 80 TLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGK---LKEM--AKEHGLPVIIVPGGY 135 (337)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCch---HHHH--HHhcCCeEEEeCCCC
Confidence 3444455678888899999999999999988886432 3222 122367788888555
No 499
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=27.24 E-value=69 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCccEEEeCCCcch-------HHHHHHHcCCceEEEc
Q 012194 102 LCELVEKMNGSVVPVDCIVYDSFLPW-------ALDVAKKFGLVGAAFL 143 (468)
Q Consensus 102 ~~~~l~~l~~~~~p~DlVI~D~~~~~-------~~~~A~~lgiP~i~~~ 143 (468)
+...++++.. .||+|++|..... |..+...+++|+|.+.
T Consensus 83 l~~~~~~l~~---~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLKT---KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCCC---CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 4455555542 3699999987632 4455566778999864
No 500
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.17 E-value=5e+02 Score=27.06 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=36.4
Q ss_pred eeecCCcchHHH--HHHcCCceeecccccchhHHHHHHHhhhcc-eeEecCCCCCccCHHHHHHHHHHHhc
Q 012194 356 FLTHCGWNSTME--ALSLGVPMVAMPQWSDQSTNGKYIMDVWKM-GLKVPADEKGIVRREAIAHCISEILE 423 (468)
Q Consensus 356 ~I~HgG~~s~~E--al~~GvP~l~~P~~~DQ~~na~~l~~~~g~-G~~l~~~~~~~~~~~~l~~~i~~ll~ 423 (468)
++.+||+|.+.. -+.+|-+....-+ ....+.++..+.. |+ |..+. +.++|.+++.+.+.
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~~la~a~-G~~~~~v~-------~~~el~~al~~a~~ 531 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEVHL-GETPDFVKLAESY-GVKADRVE-------KPDEIKEALKEAIK 531 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCcccccC-CCCCCHHHHHHHC-CCeEEEEC-------CHHHHHHHHHHHHh
Confidence 889999987643 3444544322211 1235677777777 76 33333 78999999988763
Done!