BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012196
(468 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PS24|CIAO1_ANOGA Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Anopheles gambiae GN=Ciao1 PE=3 SV=3
Length = 341
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 240 VGEKKKGLFQHSSFLAG------GATIA-SGRLVVLDGILEAIWPFSGHYRPTEENFMEF 292
V +KK G F+ ++ L G T + SG L+ +++W + H+ P +E+ E
Sbjct: 86 VWDKKSGEFECNATLEGHDNEVKSVTWSRSGNLLATCSRDKSVWIWEIHHAPDQEDEYEC 145
Query: 293 CSFLEDHQVDLTNVKKHPIDDDIPPKASDS 322
+ L H D+ V HP +D + + D+
Sbjct: 146 VAVLNGHTQDVKKVCWHPQEDLLASASYDN 175
>sp|B5ZAP2|SYK_UREU1 Lysine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lysS PE=3 SV=1
Length = 493
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 123 DEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYW 167
DE+A +LA +H ++ +D + +GH ++ ++E + + +P F +
Sbjct: 334 DEQALELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLIEPTFVY 378
>sp|Q9PR83|SYK_UREPA Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=lysS PE=3 SV=1
Length = 493
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 123 DEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYW 167
DE+A +LA +H ++ +D + +GH ++ ++E + + +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B1AI47|SYK_UREP2 Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=lysS PE=3 SV=1
Length = 493
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 123 DEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYW 167
DE+A +LA +H ++ +D + +GH ++ ++E + + +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|Q55368|MOEA_SYNY3 Molybdopterin molybdenumtransferase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=moeA PE=3 SV=1
Length = 390
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 296 LEDHQVDLTNVKKHPIDDDIPPKASDSKELK--LDSSAKVDVETKNVSTAAGALINEEEE 353
+ D+QV + N ++ + + PKASD + K L+SS+K++ N+ T+ G ++
Sbjct: 113 IADNQVKIINPRQREPGEFVHPKASDCRAGKVILESSSKLNGPAWNIITSFGKTKVRVKQ 172
Query: 354 DPKLNYNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQV 413
P++ S +++ ++ QKP ++ R S + LQ + V
Sbjct: 173 KPRIQIISTGDEL--------VEITQKPKIHQL-------RRSNIYGLQVSLQSRGFQNV 217
Query: 414 NLS 416
NL+
Sbjct: 218 NLT 220
>sp|E1BZR9|TCPR1_CHICK Tectonin beta-propeller repeat-containing protein 1 OS=Gallus gallus
GN=TECPR1 PE=3 SV=1
Length = 1173
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 29/218 (13%)
Query: 35 GNGIDGDHHESDNNSATKLQKFYKSYRTRRNLA-DCAVVVEELWWKELDRAALTRSSVSF 93
G +G + +D ++ K K + RR A C +V W L+ +T +S
Sbjct: 893 GTDREGWQYAADFPASYHGHKTMKDFVRRRRWARKCKIVTNGPW---LEVPPVTLWDISI 949
Query: 94 FNSDKA--ESAVSRWERARIRAAKLGKGLCK-DEKAQKLALRHWLEAIDPRHRYGHNLHL 150
S A E +V+ W + G LC+ Q A WL + ++
Sbjct: 950 IPSSDADDEESVALWA-----ISDKGDVLCRLGVTQQNPAGTSWLHVGTDQPFVSISVGA 1004
Query: 151 YYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDL-------QHQCIKYLGPKERETYE 203
+++VW + F+ + K P D Q Q +K + R +
Sbjct: 1005 FFQVWAVARDGSAFY--------RGSVSPKKPAGDCWYHIPSPQKQKLKQVSVG-RTSVF 1055
Query: 204 VVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVG 241
V+ +NG L YRQ + S +GS W V + RK+ VG
Sbjct: 1056 VLDKNGNLWYRQG-ITPSYPQGSAWDHVSNNIRKMSVG 1092
>sp|A6W7L4|DNLJ_KINRD DNA ligase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM
14245 / SRS30216) GN=ligA PE=3 SV=1
Length = 696
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 359 YNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQ 404
Y + +DVE E + + DQ PL R++ +T PR + YP +
Sbjct: 279 YGEHRHDVEHEIDGVVVKVDQVPLQRRLGSTSRAPRWAIAYKYPPE 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,177,672
Number of Sequences: 539616
Number of extensions: 8149422
Number of successful extensions: 27810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 27586
Number of HSP's gapped (non-prelim): 242
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)