Query 012196
Match_columns 468
No_of_seqs 166 out of 185
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 00:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 95.4 0.014 3E-07 37.2 2.4 19 48-66 2-20 (21)
2 smart00015 IQ Short calmodulin 94.4 0.035 7.7E-07 36.9 2.4 21 46-66 2-22 (26)
3 PF13360 PQQ_2: PQQ-like domai 72.4 12 0.00027 33.8 6.6 75 208-282 12-98 (238)
4 TIGR03300 assembly_YfgL outer 67.1 19 0.0004 35.9 7.1 50 226-275 320-376 (377)
5 PRK11138 outer membrane biogen 66.9 21 0.00046 36.2 7.5 78 204-281 271-356 (394)
6 cd02885 IPP_Isomerase Isopente 62.9 29 0.00063 31.4 6.9 77 212-308 6-95 (165)
7 PRK11138 outer membrane biogen 62.5 27 0.00058 35.5 7.3 113 163-276 266-392 (394)
8 PF08763 Ca_chan_IQ: Voltage g 59.9 8.5 0.00018 28.6 2.3 19 48-66 10-28 (35)
9 TIGR03300 assembly_YfgL outer 57.8 41 0.00088 33.6 7.5 77 206-282 258-342 (377)
10 PF02375 JmjN: jmjN domain; I 56.6 5.8 0.00013 28.9 1.0 17 282-298 3-19 (34)
11 PF13360 PQQ_2: PQQ-like domai 52.0 32 0.00069 31.2 5.3 91 191-281 38-143 (238)
12 PF13344 Hydrolase_6: Haloacid 48.3 9.6 0.00021 32.4 1.3 60 230-305 1-60 (101)
13 PF10411 DsbC_N: Disulfide bon 47.1 32 0.00069 26.9 3.9 28 200-239 24-51 (57)
14 TIGR02150 IPP_isom_1 isopenten 47.0 94 0.002 28.1 7.5 60 226-307 29-89 (158)
15 smart00545 JmjN Small domain f 42.1 19 0.00042 27.2 1.9 31 282-312 5-38 (42)
16 PF13570 PQQ_3: PQQ-like domai 39.3 38 0.00083 23.8 3.0 15 227-241 22-36 (40)
17 COG4632 EpsL Exopolysaccharide 37.0 50 0.0011 34.5 4.5 63 203-271 156-220 (320)
18 KOG0377 Protein serine/threoni 36.4 23 0.0005 39.2 2.1 22 47-68 17-38 (631)
19 smart00701 PGRP Animal peptido 36.0 94 0.002 28.3 5.7 57 227-297 64-122 (142)
20 KOG0942 E3 ubiquitin protein l 35.8 21 0.00045 42.1 1.8 23 45-67 27-49 (1001)
21 PRK03759 isopentenyl-diphospha 32.4 1.7E+02 0.0038 27.1 7.0 60 227-306 37-97 (184)
22 PF15537 Toxin_59: Putative to 32.4 51 0.0011 30.6 3.3 57 226-283 50-115 (125)
23 KOG4427 E3 ubiquitin protein l 32.3 27 0.00059 40.8 2.0 24 45-68 28-51 (1096)
24 cd00148 PROF Profilin binds ac 31.8 35 0.00075 30.4 2.2 60 252-314 9-75 (127)
25 cd04904 ACT_AAAH ACT domain of 30.8 49 0.0011 26.5 2.7 30 283-314 10-39 (74)
26 PF01453 B_lectin: D-mannose b 29.6 2.3E+02 0.0049 24.7 6.8 65 200-265 19-91 (114)
27 PF13509 S1_2: S1 domain; PDB: 28.7 44 0.00095 26.3 2.1 34 162-206 13-48 (61)
28 PF00235 Profilin: Profilin; 27.8 25 0.00054 30.2 0.6 57 252-312 9-72 (121)
29 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.5 2.4E+02 0.0051 30.9 8.0 96 187-282 67-193 (527)
30 cd00216 PQQ_DH Dehydrogenases 25.6 2.2E+02 0.0049 30.4 7.3 86 193-283 65-188 (488)
31 COG4337 Uncharacterized protei 25.5 1.1E+02 0.0023 30.1 4.4 24 225-254 179-202 (206)
32 PF13128 DUF3954: Protein of u 25.4 71 0.0015 25.5 2.6 20 262-281 10-30 (50)
33 PRK14464 ribosomal RNA large s 24.4 60 0.0013 34.1 2.7 28 277-304 283-310 (344)
34 TIGR03074 PQQ_membr_DH membran 24.2 2.7E+02 0.0058 32.4 7.9 55 227-281 261-347 (764)
35 cd05727 Ig2_Contactin-2-like S 23.2 1.9E+02 0.0041 25.0 5.1 33 210-243 35-67 (96)
36 PF08450 SGL: SMP-30/Gluconola 21.1 2.3E+02 0.0051 26.5 5.7 27 254-281 186-215 (246)
37 TIGR01456 CECR5 HAD-superfamil 20.5 73 0.0016 32.2 2.4 62 229-305 2-67 (321)
38 COG2335 Secreted and surface p 20.1 2.1E+02 0.0046 28.1 5.3 61 200-276 114-176 (187)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.41 E-value=0.014 Score=37.21 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhHHHHhhc
Q 012196 48 NSATKLQKFYKSYRTRRNL 66 (468)
Q Consensus 48 ~AA~~iQk~Yr~yRtRR~l 66 (468)
.||++||+.||+|..|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999875
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.43 E-value=0.035 Score=36.87 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.2
Q ss_pred hhHHHHHHHHhhhhHHHHhhc
Q 012196 46 DNNSATKLQKFYKSYRTRRNL 66 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~l 66 (468)
...||++||+.||+|..|++.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999986
No 3
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.41 E-value=12 Score=33.82 Aligned_cols=75 Identities=28% Similarity=0.328 Sum_probs=51.8
Q ss_pred CCeEEEccC-----CceEe-ccCCCeEEEEEcCCCceEEeeccCCcccccccCCC----CcceeeeeEEEe--cceEEEe
Q 012196 208 NGKLLYRQS-----RVCVS-TVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAG----GATIASGRLVVL--DGILEAI 275 (468)
Q Consensus 208 dGrL~y~~s-----G~~vd-Tt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaG----g~V~AAG~I~V~--nG~Lk~I 275 (468)
+|+.+|..+ +..+. +...+..+||.+.++.||+=....|....+.=+.+ .++...|.|.+- +|.|..|
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYAL 91 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEec
Confidence 889988772 33332 33356779999999999999887776543332222 246666777654 6899999
Q ss_pred cCCCCCC
Q 012196 276 WPFSGHY 282 (468)
Q Consensus 276 sp~SGHY 282 (468)
...+|+-
T Consensus 92 d~~tG~~ 98 (238)
T PF13360_consen 92 DAKTGKV 98 (238)
T ss_dssp ETTTSCE
T ss_pred ccCCcce
Confidence 9999986
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.06 E-value=19 Score=35.92 Aligned_cols=50 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCceEEeeccCCcccc-----cccCCCCcceeeeeEEEe--cceEEEe
Q 012196 226 SKWIFVLSTSRKLYVGEKKKGLFQH-----SSFLAGGATIASGRLVVL--DGILEAI 275 (468)
Q Consensus 226 ~kWIFVmdtsg~LYVG~KkkG~FQH-----SSFLaGg~V~AAG~I~V~--nG~Lk~I 275 (468)
+.-+||.+.+|.||+-....|.+.- .+-....++++-|.|.|- ||.|..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4578999999999998877777653 222334556666666663 7777654
No 5
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.94 E-value=21 Score=36.20 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=49.6
Q ss_pred EEEeCCeEEEccCC-ceEeccCCCeEEEEEcCCCceEEeeccCCccc--cccc---CCCCcceeeeeEEEe--cceEEEe
Q 012196 204 VVIENGKLLYRQSR-VCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQ--HSSF---LAGGATIASGRLVVL--DGILEAI 275 (468)
Q Consensus 204 V~IedGrL~y~~sG-~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQ--HSSF---LaGg~V~AAG~I~V~--nG~Lk~I 275 (468)
+-..+|+++|++.- ....-.-.+..|||.+.+|.||+=..+.|... ...+ ....++++-|.|.+- +|.|..|
T Consensus 271 ld~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 271 LDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI 350 (394)
T ss_pred EECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE
Confidence 33347777776531 11011113567999999999999887777542 1111 123567777888774 7999999
Q ss_pred cCCCCC
Q 012196 276 WPFSGH 281 (468)
Q Consensus 276 sp~SGH 281 (468)
.+.+|.
T Consensus 351 d~~tG~ 356 (394)
T PRK11138 351 NREDGR 356 (394)
T ss_pred ECCCCC
Confidence 988875
No 6
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=62.87 E-value=29 Score=31.36 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=51.1
Q ss_pred EEccCCceEeccC------CCe------EEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEEEecCCC
Q 012196 212 LYRQSRVCVSTVE------GSK------WIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFS 279 (468)
Q Consensus 212 ~y~~sG~~vdTt~------~~k------WIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~S 279 (468)
+|+.+|+++.+.. .+. .++|.+.++++++.+...+... +.|.... +-+
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~----~Pg~w~~----------------~~g 65 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYT----FPGLWTN----------------TCC 65 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCcc----CCCcccc----------------ccc
Confidence 5667777776543 233 4889999999999865433321 2232221 124
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCCCCCcee
Q 012196 280 GHYRPTEENFMEFCSFLED-HQVDLTNVKK 308 (468)
Q Consensus 280 GHYRPt~enf~~Fv~~L~e-~GVDLs~Vk~ 308 (468)
||-.|.+.-....++.++| -|+....+..
T Consensus 66 G~ie~GEt~~eaa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 66 SHPLPGEGVKDAAQRRLREELGITGDLLEL 95 (165)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence 8888999888899998875 6998776554
No 7
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=62.51 E-value=27 Score=35.45 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred CceEEeecCCCCcc---ccCCCCcccccchhhhccCccCCcceEEEEeCCeEEEccCC--ceEeccC--CCeEEEEEcCC
Q 012196 163 PFFYWLDIGDGKEV---NVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSR--VCVSTVE--GSKWIFVLSTS 235 (468)
Q Consensus 163 ~FFyWLD~GeGk~v---~le~CpR~kL~~q~VkYLspeERe~YeV~IedGrL~y~~sG--~~vdTt~--~~kWIFVmdts 235 (468)
.-+|-||.-.|+.+ ++.... .-......-|+.-..-.-|-+-..+|+++|..+. ....++. .+..+||.+.+
T Consensus 266 g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~ 344 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE 344 (394)
T ss_pred CeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC
Confidence 35677888777653 111111 1111222345544444444444568888886642 1111111 24568999999
Q ss_pred CceEEeeccCCcccccccC-----CCCcceeeeeEEEe--cceEEEec
Q 012196 236 RKLYVGEKKKGLFQHSSFL-----AGGATIASGRLVVL--DGILEAIW 276 (468)
Q Consensus 236 g~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~I~V~--nG~Lk~Is 276 (468)
|.||+=....|.+--+.-+ ...++++-|+|.|- ||.|..|.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 9999877667765433322 23567777888774 78887775
No 8
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=59.88 E-value=8.5 Score=28.57 Aligned_cols=19 Identities=11% Similarity=0.538 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhHHHHhhc
Q 012196 48 NSATKLQKFYKSYRTRRNL 66 (468)
Q Consensus 48 ~AA~~iQk~Yr~yRtRR~l 66 (468)
=||..||..||.|+.||+-
T Consensus 10 YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999863
No 9
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=57.80 E-value=41 Score=33.56 Aligned_cols=77 Identities=14% Similarity=0.310 Sum_probs=46.8
Q ss_pred EeCCeEEEccCCceEec-cCCCeEEEEEcCCCceEEeeccCCcccc--cccC---CCCcceeeeeEEE--ecceEEEecC
Q 012196 206 IENGKLLYRQSRVCVST-VEGSKWIFVLSTSRKLYVGEKKKGLFQH--SSFL---AGGATIASGRLVV--LDGILEAIWP 277 (468)
Q Consensus 206 IedGrL~y~~sG~~vdT-t~~~kWIFVmdtsg~LYVG~KkkG~FQH--SSFL---aGg~V~AAG~I~V--~nG~Lk~Isp 277 (468)
.++|+++|..+..-..+ .-.+.-|||.+.+|.||+=....|.... ..+- ...++++.|.|.+ .+|.|..+++
T Consensus 258 ~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 258 LRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 34777777654111110 1135579999999999998877776432 2221 2344556666666 3799988887
Q ss_pred CCCCC
Q 012196 278 FSGHY 282 (468)
Q Consensus 278 ~SGHY 282 (468)
.+|-.
T Consensus 338 ~tG~~ 342 (377)
T TIGR03300 338 EDGSF 342 (377)
T ss_pred CCCCE
Confidence 77643
No 10
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=56.62 E-value=5.8 Score=28.85 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHHH
Q 012196 282 YRPTEENFMEFCSFLED 298 (468)
Q Consensus 282 YRPt~enf~~Fv~~L~e 298 (468)
|+||.++|..|+++++.
T Consensus 3 f~Pt~eEF~dp~~yi~~ 19 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISS 19 (34)
T ss_dssp E---HHHHS-HHHHHHH
T ss_pred ccCCHHHHhCHHHHHHH
Confidence 78999999999999875
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=51.98 E-value=32 Score=31.19 Aligned_cols=91 Identities=26% Similarity=0.387 Sum_probs=50.0
Q ss_pred hhccCccCCcceEEEEeCCeEEEccCC-ceEec--cCCCeEEEEEcCCCceEEeeccCCcccccccC---------CCCc
Q 012196 191 IKYLGPKERETYEVVIENGKLLYRQSR-VCVST--VEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFL---------AGGA 258 (468)
Q Consensus 191 VkYLspeERe~YeV~IedGrL~y~~sG-~~vdT--t~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL---------aGg~ 258 (468)
.-|..-.+..-|-+-+.+|+++|..+- ..+.. .-.+.-+||.+.++.||+=..+.|..-.+... ....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccC
Confidence 344443333444444458888887651 11111 11244578888888899888777876655311 1222
Q ss_pred ceeee-eEEE-e-cceEEEecCCCCC
Q 012196 259 TIASG-RLVV-L-DGILEAIWPFSGH 281 (468)
Q Consensus 259 V~AAG-~I~V-~-nG~Lk~Isp~SGH 281 (468)
....| .+.+ . +|.|..|.+.+|.
T Consensus 118 ~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 118 PAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ceEecCEEEEEeccCcEEEEecCCCc
Confidence 22223 2333 3 6888888887775
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=48.31 E-value=9.6 Score=32.42 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=40.0
Q ss_pred EEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCCC
Q 012196 230 FVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTN 305 (468)
Q Consensus 230 FVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~Fv~~L~e~GVDLs~ 305 (468)
|++|.+|.||.|.+ .+- |++-+--.|+-.+-.+.-++|.|.+ .-..+.+.|+..|++.+.
T Consensus 1 ~l~D~dGvl~~g~~---------~ip-ga~e~l~~L~~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE---------PIP-GAVEALDALRERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp EEEESTTTSEETTE---------E-T-THHHHHHHHHHTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--G
T ss_pred CEEeCccEeEeCCC---------cCc-CHHHHHHHHHHcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCCc
Confidence 78899999998754 122 3344555555566789999999875 345677888999988643
No 13
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=47.09 E-value=32 Score=26.89 Aligned_cols=28 Identities=36% Similarity=0.752 Sum_probs=18.3
Q ss_pred cceEEEEeCCeEEEccCCceEeccCCCeEEEEEcCCCceE
Q 012196 200 ETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLY 239 (468)
Q Consensus 200 e~YeV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LY 239 (468)
--|+|.+.+|.++| ++++++++|+ |+||
T Consensus 24 GlyeV~~~~~~i~Y--------~~~dg~yli~----G~l~ 51 (57)
T PF10411_consen 24 GLYEVVLKGGGILY--------VDEDGRYLIQ----GQLY 51 (57)
T ss_dssp TEEEEEE-TTEEEE--------EETTSSEEEE----S-EE
T ss_pred CeEEEEECCCeEEE--------EcCCCCEEEE----eEEE
Confidence 46888887887776 3556667666 6666
No 14
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=46.99 E-value=94 Score=28.12 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCC
Q 012196 226 SKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLE-DHQVDLT 304 (468)
Q Consensus 226 ~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~Fv~~L~-e~GVDLs 304 (468)
+..++|+|.+|++++.+...+.+. ..|.....+ +||--+.+ ....++.|+ |-|+++.
T Consensus 29 ~v~v~v~~~~g~vLl~kR~~~k~~----~PG~W~~~~----------------gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 29 AFSVFLFNEEGQLLLQRRALSKIT----WPGVWTNSC----------------CSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred EEEEEEEcCCCeEEEEeccCCCcC----CCCCccccc----------------cCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 456899999999999865443221 233332221 25666666 377778775 5899988
Q ss_pred Cce
Q 012196 305 NVK 307 (468)
Q Consensus 305 ~Vk 307 (468)
.+.
T Consensus 87 ~~~ 89 (158)
T TIGR02150 87 DVP 89 (158)
T ss_pred ccc
Confidence 765
No 15
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=42.11 E-value=19 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHH---cCCCCCCceecCCC
Q 012196 282 YRPTEENFMEFCSFLED---HQVDLTNVKKHPID 312 (468)
Q Consensus 282 YRPt~enf~~Fv~~L~e---~GVDLs~Vk~~~~d 312 (468)
|+||.++|..|+.|++. .|-..-=||+.+.+
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~ 38 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPK 38 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCC
Confidence 78999999988888864 56666666666543
No 16
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=39.28 E-value=38 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=9.5
Q ss_pred eEEEEEcCCCceEEe
Q 012196 227 KWIFVLSTSRKLYVG 241 (468)
Q Consensus 227 kWIFVmdtsg~LYVG 241 (468)
.-+||.+.+|+||+=
T Consensus 22 g~vyv~~~dg~l~al 36 (40)
T PF13570_consen 22 GRVYVGTGDGNLYAL 36 (40)
T ss_dssp SEEEEE-TTSEEEEE
T ss_pred CEEEEEcCCCEEEEE
Confidence 357777777777763
No 17
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=37.01 E-value=50 Score=34.53 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=39.4
Q ss_pred EEEEeCCeEEEccCCceEeccCCCeEEEEEcCCCceEEeeccCCcccccccCCCCc-c-eeeeeEEEecce
Q 012196 203 EVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGA-T-IASGRLVVLDGI 271 (468)
Q Consensus 203 eV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~-V-~AAG~I~V~nG~ 271 (468)
-++|.||+|+|.+|=.-+ |. .+-.|+++.+|+|-|+-..+. -+-++.+++ + .+-|-+.|+||+
T Consensus 156 GfqisdGklvkp~dw~~~-t~--ae~~~aftkdG~lkVyg~~sp---a~ll~sngaeasf~fgp~LIkdgk 220 (320)
T COG4632 156 GFQISDGKLVKPYDWAGY-TG--AEACVAFTKDGTLKVYGRESP---ADLLISNGAEASFAFGPWLIKDGK 220 (320)
T ss_pred EEEEeCCeEeecCChhhh-cc--ccceEEEccCCcEEEcCCCCh---HHHHHhccceeeeeeccEEEecCC
Confidence 466778888886532222 22 334688888999999943211 112344433 4 678999999995
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.39 E-value=23 Score=39.22 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.4
Q ss_pred hHHHHHHHHhhhhHHHHhhccC
Q 012196 47 NNSATKLQKFYKSYRTRRNLAD 68 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~lad 68 (468)
-+||..|||-||.|-+|++..-
T Consensus 17 ikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988754
No 19
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=35.99 E-value=94 Score=28.35 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=31.9
Q ss_pred eEEEEEcCCCceEEeecc--CCcccccccCCCCcceeeeeEEEecceEEEecCCCCCCCCCHHHHHHHHHHHH
Q 012196 227 KWIFVLSTSRKLYVGEKK--KGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLE 297 (468)
Q Consensus 227 kWIFVmdtsg~LYVG~Kk--kG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~Fv~~L~ 297 (468)
-+=|+++.+|++|.|..- .|. |. .| .-++.|.|. +--.-..+.||.+.+......|.
T Consensus 64 gYhflI~~dG~IyeGR~~~~~ga--h~---~g---~N~~sigI~------~iG~~~~~~pt~~q~~al~~Li~ 122 (142)
T smart00701 64 GYNFLVGGDGKVYEGRGWNVVGA--HT---GG---YNDISLGIA------FIGNFTDKLPTDAALDAAQDLLA 122 (142)
T ss_pred CCeEEEcCCCEEEECCCCCcccc--cc---cC---CCCCeEEEE------EEeCCCCCCCcHHHHHHHHHHHH
Confidence 456999999999999641 122 21 11 012223222 11122457899888776665554
No 20
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=21 Score=42.10 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHhhhhHHHHhhcc
Q 012196 45 SDNNSATKLQKFYKSYRTRRNLA 67 (468)
Q Consensus 45 e~~~AA~~iQk~Yr~yRtRR~la 67 (468)
.++.+|++||+..||||.|++-.
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 46789999999999999998754
No 21
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=32.39 E-value=1.7e+02 Score=27.07 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=38.8
Q ss_pred eEEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCCC
Q 012196 227 KWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLE-DHQVDLTN 305 (468)
Q Consensus 227 kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~Fv~~L~-e~GVDLs~ 305 (468)
..++|++.+|++++.....+.. + +-|.... +-.||-.|.+.-....++.|. |-|++...
T Consensus 37 v~v~i~~~~g~vLL~rR~~~~~---~-~PG~w~~----------------~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 37 FSCYLFDADGRLLVTRRALSKK---T-WPGVWTN----------------SCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred EEEEEEcCCCeEEEEEccCCCC---C-CCCcccc----------------cccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3478888888888876432221 1 1222211 123999999988888888886 47998865
Q ss_pred c
Q 012196 306 V 306 (468)
Q Consensus 306 V 306 (468)
+
T Consensus 97 ~ 97 (184)
T PRK03759 97 L 97 (184)
T ss_pred c
Confidence 4
No 22
>PF15537 Toxin_59: Putative toxin 59
Probab=32.36 E-value=51 Score=30.55 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCceEEeecc----CCcccccccCC----CCcceeeeeEEE-ecceEEEecCCCCCCC
Q 012196 226 SKWIFVLSTSRKLYVGEKK----KGLFQHSSFLA----GGATIASGRLVV-LDGILEAIWPFSGHYR 283 (468)
Q Consensus 226 ~kWIFVmdtsg~LYVG~Kk----kG~FQHSSFLa----Gg~V~AAG~I~V-~nG~Lk~Isp~SGHYR 283 (468)
+.--||.|...+.|+--.. .+.-+|--++. -.+++.-|+|.= -||.|.- .-+||||-
T Consensus 50 G~~eFVFDP~~~~Fa~G~~~~~~~~~~~H~~la~~iGA~~s~vvGGr~~R~~~G~l~T-newSGHyg 115 (125)
T PF15537_consen 50 GSIEFVFDPKTNRFAVGSPRDYGIDVSGHDQLARAIGADESTVVGGRFSRGPNGELST-NEWSGHYG 115 (125)
T ss_pred CCccEEEcCCcCeEeecCCcccccccchHHHHHHhcCCCCCeeEeeEEEecCCCCEee-cccccccc
Confidence 3345777776555544222 24455644433 345666677776 5776643 45899995
No 23
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.32 E-value=27 Score=40.80 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHhhhhHHHHhhccC
Q 012196 45 SDNNSATKLQKFYKSYRTRRNLAD 68 (468)
Q Consensus 45 e~~~AA~~iQk~Yr~yRtRR~lad 68 (468)
..++||..||.+.|||=+|++++.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998865
No 24
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=31.79 E-value=35 Score=30.39 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=45.9
Q ss_pred ccCCCCcceeeeeEEEecceEEEecCCCCC-CCCCHHHHHHHHHHHHH------cCCCCCCceecCCCCC
Q 012196 252 SFLAGGATIASGRLVVLDGILEAIWPFSGH-YRPTEENFMEFCSFLED------HQVDLTNVKKHPIDDD 314 (468)
Q Consensus 252 SFLaGg~V~AAG~I~V~nG~Lk~Isp~SGH-YRPt~enf~~Fv~~L~e------~GVDLs~Vk~~~~d~d 314 (468)
++++-+.+..|..+..+||. +|..|.- +.++.+++..+++.+++ +|+-+..+|-..+..|
T Consensus 9 ~L~~~g~~~~aAI~g~d~g~---vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d 75 (127)
T cd00148 9 NLLGTGKVDSAAIVGHDDGS---VWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRAD 75 (127)
T ss_pred HHhhcCCcCEEEEEecCCCC---eEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecC
Confidence 35666678888888887686 5778888 99999999999997764 7777777775555444
No 25
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=30.75 E-value=49 Score=26.49 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCceecCCCCC
Q 012196 283 RPTEENFMEFCSFLEDHQVDLTNVKKHPIDDD 314 (468)
Q Consensus 283 RPt~enf~~Fv~~L~e~GVDLs~Vk~~~~d~d 314 (468)
+|+. +...++.|+++||+|++++-.|+...
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~IeSRP~~~~ 39 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIESRPSRRN 39 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5665 99999999999999999999888654
No 26
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=29.55 E-value=2.3e+02 Score=24.69 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=40.3
Q ss_pred cceEEEEe-CCeEE-EccCCceEecc----CC--CeEEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeE
Q 012196 200 ETYEVVIE-NGKLL-YRQSRVCVSTV----EG--SKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRL 265 (468)
Q Consensus 200 e~YeV~Ie-dGrL~-y~~sG~~vdTt----~~--~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I 265 (468)
..|.+++. ||.|+ |+.+|..+-.+ .. .....+|..+|+|.+-.. .+..==+||-.-..++..|+-
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-~~~~lW~Sf~~ptdt~L~~q~ 91 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-SGNVLWQSFDYPTDTLLPGQK 91 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-TSEEEEESTTSSS-EEEEEET
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-cceEEEeecCCCccEEEeccC
Confidence 45888885 89875 66565666333 22 256667777899999874 444445567666666555543
No 27
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=28.69 E-value=44 Score=26.27 Aligned_cols=34 Identities=38% Similarity=0.597 Sum_probs=21.5
Q ss_pred CCceEEeecCCCCccccC--CCCcccccchhhhccCccCCcceEEEE
Q 012196 162 QPFFYWLDIGDGKEVNVA--KCPRNDLQHQCIKYLGPKERETYEVVI 206 (468)
Q Consensus 162 q~FFyWLD~GeGk~v~le--~CpR~kL~~q~VkYLspeERe~YeV~I 206 (468)
.+|.|+||.|++++|-|+ +||. ..++-+.++|+|
T Consensus 13 ~~~g~fL~~~~~~~vlLp~~e~~~-----------~~~~Gd~v~VFv 48 (61)
T PF13509_consen 13 NEFGYFLDDGEGKEVLLPKSEVPE-----------PLKVGDEVEVFV 48 (61)
T ss_dssp -SSEEEEEETT-EEEEEEGGG-----------------TTSEEEEEE
T ss_pred eCCEEEEECCCCCEEEechHHcCC-----------CCCCCCEEEEEE
Confidence 368899999999998885 5552 245667788876
No 28
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=27.79 E-value=25 Score=30.20 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=42.8
Q ss_pred ccCCCCcceeeeeEEEecceEEEecCCCCCC-CCCHHHHHHHHHHHHH------cCCCCCCceecCCC
Q 012196 252 SFLAGGATIASGRLVVLDGILEAIWPFSGHY-RPTEENFMEFCSFLED------HQVDLTNVKKHPID 312 (468)
Q Consensus 252 SFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHY-RPt~enf~~Fv~~L~e------~GVDLs~Vk~~~~d 312 (468)
.|++-+.+..|+.+- .||. +|..|+.+ .++.+++..+++.|++ .|+.+..+|-..+.
T Consensus 9 ~L~~~~~~~~aaI~~-~dG~---vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~ 72 (121)
T PF00235_consen 9 QLIGTGNITKAAIIG-SDGS---VWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLR 72 (121)
T ss_dssp HHHTTSSESEEEEEE-TTSS---EEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEE
T ss_pred HhcccCcEeEEEEEc-CCCC---EEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEe
Confidence 345556688888888 9994 66667778 9999999999998776 58888888854443
No 29
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.45 E-value=2.4e+02 Score=30.94 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=60.1
Q ss_pred cchhhhccCccCCcceEEEEeCCeEEEccCCce---Ee------ccC-----CCeEEEEEcCCCceEEeeccCCccc---
Q 012196 187 QHQCIKYLGPKERETYEVVIENGKLLYRQSRVC---VS------TVE-----GSKWIFVLSTSRKLYVGEKKKGLFQ--- 249 (468)
Q Consensus 187 ~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~---vd------Tt~-----~~kWIFVmdtsg~LYVG~KkkG~FQ--- 249 (468)
....+-|++-....-|-+-...|+++|..+-.. +. +.. .+.-|||.+.++.||+=..+.|+..
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 345566775444444444445899999865321 10 000 1235888899999999776656432
Q ss_pred ----c--cccCCCCcceeeeeEEEe--------cceEEEecCCCCCC
Q 012196 250 ----H--SSFLAGGATIASGRLVVL--------DGILEAIWPFSGHY 282 (468)
Q Consensus 250 ----H--SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGHY 282 (468)
| .....+.++++-|.|.|- +|.|.++...+|.-
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 1 123445677777887774 58999999999964
No 30
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=25.64 E-value=2.2e+02 Score=30.37 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccCccCCcceEEEEeCCeEEEccCCceEeccCC----------------C-eEEEEEcCCCceEEeeccCCccc------
Q 012196 193 YLGPKERETYEVVIENGKLLYRQSRVCVSTVEG----------------S-KWIFVLSTSRKLYVGEKKKGLFQ------ 249 (468)
Q Consensus 193 YLspeERe~YeV~IedGrL~y~~sG~~vdTt~~----------------~-kWIFVmdtsg~LYVG~KkkG~FQ------ 249 (468)
|++.....-|-+-..+|+++| .+++... + .-|||.+.+|.||+=..+.|..-
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W-----~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLW-----RYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEeCCCCcEEEEECCCChhhc-----eeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Q ss_pred ----ccccCCCCcceeeeeEEEe-----------cceEEEecCCCCCCC
Q 012196 250 ----HSSFLAGGATIASGRLVVL-----------DGILEAIWPFSGHYR 283 (468)
Q Consensus 250 ----HSSFLaGg~V~AAG~I~V~-----------nG~Lk~Isp~SGHYR 283 (468)
+.-.+.+.+++..|.+.+- +|.|..|...+|..+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
No 31
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=1.1e+02 Score=30.07 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCceEEeeccCCcccccccC
Q 012196 225 GSKWIFVLSTSRKLYVGEKKKGLFQHSSFL 254 (468)
Q Consensus 225 ~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL 254 (468)
+-+|.|--|..|.|-|- .||||+-
T Consensus 179 DKtWaFkKdd~G~lRIv------~HHSSLP 202 (206)
T COG4337 179 DKTWAFKKDDQGQLRIV------LHHSSLP 202 (206)
T ss_pred eceeeeeccCCCcEEEE------EecCCCC
Confidence 56899999999988775 4799974
No 32
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=25.42 E-value=71 Score=25.50 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=13.0
Q ss_pred eeeEEEecceEEEec-CCCCC
Q 012196 262 SGRLVVLDGILEAIW-PFSGH 281 (468)
Q Consensus 262 AG~I~V~nG~Lk~Is-p~SGH 281 (468)
-|..+|+||.|..|. |.|||
T Consensus 10 ngiYiV~~G~v~~i~pP~sGf 30 (50)
T PF13128_consen 10 NGIYIVKDGEVTFIEPPESGF 30 (50)
T ss_pred CeEEEEECCeEEEcCCCCCCc
Confidence 466677777777773 45554
No 33
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.36 E-value=60 Score=34.12 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCC
Q 012196 277 PFSGHYRPTEENFMEFCSFLEDHQVDLT 304 (468)
Q Consensus 277 p~SGHYRPt~enf~~Fv~~L~e~GVDLs 304 (468)
+.+.|.+|+.+...+|.+.|+.+||..+
T Consensus 283 ~g~~~~rp~~~~i~~f~~~L~~~gi~~t 310 (344)
T PRK14464 283 DGDAYRRPSGERIVAMARYLHRRGVLTK 310 (344)
T ss_pred CCCCccCCCHHHHHHHHHHHHHCCceEE
Confidence 3568999999999999999999998654
No 34
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.19 E-value=2.7e+02 Score=32.41 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=40.3
Q ss_pred eEEEEEcCCCceEEeeccCCccccc--------------------ccCCCCcceeeeeEEEe------------cceEEE
Q 012196 227 KWIFVLSTSRKLYVGEKKKGLFQHS--------------------SFLAGGATIASGRLVVL------------DGILEA 274 (468)
Q Consensus 227 kWIFVmdtsg~LYVG~KkkG~FQHS--------------------SFLaGg~V~AAG~I~V~------------nG~Lk~ 274 (468)
.-|||.+.+++||.=..+.|+..-+ -...+.++++-|.|+|- +|.|++
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 4799999999999988777765421 12345677777777774 589999
Q ss_pred ecCCCCC
Q 012196 275 IWPFSGH 281 (468)
Q Consensus 275 Isp~SGH 281 (468)
+...+|.
T Consensus 341 ~Da~TGk 347 (764)
T TIGR03074 341 FDVNTGA 347 (764)
T ss_pred EECCCCc
Confidence 9988885
No 35
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=23.17 E-value=1.9e+02 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=22.7
Q ss_pred eEEEccCCceEeccCCCeEEEEEcCCCceEEeec
Q 012196 210 KLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEK 243 (468)
Q Consensus 210 rL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~K 243 (468)
.+.|-+|+.+.....+.. .||...+|+||+..-
T Consensus 35 ~~~W~k~~~~~~~~~d~r-~~~~~~~G~L~fs~v 67 (96)
T cd05727 35 SYRWLLNEFPNFIPEDGR-RFVSQTNGNLYIAKV 67 (96)
T ss_pred EEEEEECCcccccccCCC-eEEeCCCCcEEEeec
Confidence 456888887654433333 478788999999963
No 36
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.11 E-value=2.3e+02 Score=26.51 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=18.2
Q ss_pred CCCCcceeeeeEEEe---cceEEEecCCCCC
Q 012196 254 LAGGATIASGRLVVL---DGILEAIWPFSGH 281 (468)
Q Consensus 254 LaGg~V~AAG~I~V~---nG~Lk~Isp~SGH 281 (468)
.-|-++-+.|.|-|- +|.|..++|. |.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 345667777888776 6888888776 54
No 37
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=20.47 E-value=73 Score=32.20 Aligned_cols=62 Identities=21% Similarity=0.102 Sum_probs=36.6
Q ss_pred EEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEe----cceEEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCC
Q 012196 229 IFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVL----DGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLT 304 (468)
Q Consensus 229 IFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~----nG~Lk~Isp~SGHYRPt~enf~~Fv~~L~e~GVDLs 304 (468)
.|++|.+|.||-|.+- --++..+--.|... +=.+..++|.+|. |+.+-...+ ++..|++++
T Consensus 2 ~~ifD~DGvL~~g~~~----------i~ga~eal~~L~~~~~~~g~~~~flTNn~g~--s~~~~~~~l---~~~lG~~~~ 66 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP----------IAGASDALRRLNRNQGQLKIPYIFLTNGGGF--SERARAEEI---SSLLGVDVS 66 (321)
T ss_pred EEEEeCcCceECCccc----------cHHHHHHHHHHhccccccCCCEEEEecCCCC--CHHHHHHHH---HHHcCCCCC
Confidence 5899999999998541 11233333344444 4456788888884 333322222 366777765
Q ss_pred C
Q 012196 305 N 305 (468)
Q Consensus 305 ~ 305 (468)
.
T Consensus 67 ~ 67 (321)
T TIGR01456 67 P 67 (321)
T ss_pred H
Confidence 3
No 38
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=20.14 E-value=2.1e+02 Score=28.15 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.9
Q ss_pred cceEEEEeCCeEEEccC--CceEeccCCCeEEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEEEec
Q 012196 200 ETYEVVIENGKLLYRQS--RVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIW 276 (468)
Q Consensus 200 e~YeV~IedGrL~y~~s--G~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk~Is 276 (468)
+--.++|.+|++.-+.. ..-+.|.++..--+-++.++ +||+ .+.....-|.+.||+|..|.
T Consensus 114 ~iLtYHVv~Gk~~~~~l~~~~~v~t~~G~~~~i~~~~~~-~~Vn---------------~a~v~~~di~a~NgvIhvID 176 (187)
T COG2335 114 KILTYHVVEGKITAADLKSSGSVKTVQGADLKIKVTGGG-VYVN---------------DATVTIADINASNGVIHVID 176 (187)
T ss_pred eeeEEEEEcCcccHHHhhccccceeecCceEEEEEcCCc-EEEe---------------eeEEEeccEeccCcEEEEEe
Confidence 44567788999875443 34556666666666666544 9988 34455567888999999986
Done!