Query 012196
Match_columns 468
No_of_seqs 166 out of 185
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l53_B CAM, voltage-gated sodi 95.7 0.0073 2.5E-07 42.1 3.1 25 45-69 4-28 (31)
2 2kxw_B Sodium channel protein 95.5 0.0085 2.9E-07 40.6 2.8 22 45-66 4-25 (27)
3 2ix7_C Myosin-5A; contractIle 94.3 0.023 7.8E-07 42.6 2.5 37 44-80 2-40 (58)
4 1n2d_C IQ2 and IQ3 motifs from 91.3 0.11 3.9E-06 37.2 2.6 19 47-65 28-46 (48)
5 1n2d_C IQ2 and IQ3 motifs from 86.4 0.34 1.2E-05 34.7 2.1 33 47-79 3-39 (48)
6 2ix7_C Myosin-5A; contractIle 82.2 0.81 2.8E-05 34.0 2.7 23 46-68 27-49 (58)
7 4dck_A Sodium channel protein 81.0 0.76 2.6E-05 42.4 2.6 23 46-68 129-151 (168)
8 3q7m_A Lipoprotein YFGL, BAMB; 60.8 22 0.00075 32.8 7.4 76 207-282 257-340 (376)
9 2dfs_A Myosin-5A; myosin-V, in 59.8 3.7 0.00013 46.7 2.4 33 47-79 791-827 (1080)
10 3bxl_B CAM, voltage-dependent 59.6 5.3 0.00018 27.0 2.1 17 49-65 4-20 (26)
11 3dvk_B Voltage-dependent R-typ 59.5 4.9 0.00017 26.5 1.9 16 49-64 8-23 (23)
12 3dve_B Voltage-dependent N-typ 59.4 2.4 8.3E-05 27.9 0.5 16 49-64 7-22 (23)
13 3ohg_A Uncharacterized protein 55.6 15 0.00052 35.9 5.6 66 199-273 109-174 (285)
14 1kk8_A Myosin heavy chain, str 54.9 6.5 0.00022 43.7 3.2 37 44-80 776-817 (837)
15 2bl0_A Major plasmodial myosin 51.6 11 0.00038 28.5 3.1 20 47-66 30-49 (63)
16 2be1_A Serine/threonine-protei 50.8 21 0.00073 35.3 5.8 93 189-281 10-132 (339)
17 1wdc_A Scallop myosin; calcium 47.9 14 0.00049 27.9 3.2 19 47-65 6-24 (64)
18 2l60_A Peptide YY; GPCR ligand 43.7 20 0.00068 26.5 3.2 29 116-145 12-41 (41)
19 3q7m_A Lipoprotein YFGL, BAMB; 43.0 38 0.0013 31.1 5.9 51 226-276 318-375 (376)
20 1kk8_A Myosin heavy chain, str 42.9 10 0.00035 42.2 2.4 27 46-81 804-830 (837)
21 2dfs_A Myosin-5A; myosin-V, in 39.0 15 0.0005 42.0 2.9 21 47-67 839-859 (1080)
22 1f8p_A Neuropeptide Y (PNPY); 36.5 11 0.00037 27.3 0.9 28 117-145 9-37 (37)
23 3g43_E Voltage-dependent L-typ 32.9 17 0.00059 30.2 1.6 18 48-65 64-81 (81)
24 1w7j_A Myosin VA; motor protei 30.9 21 0.00073 39.5 2.4 23 45-67 766-788 (795)
25 2bf9_A Pancreatic hormone; tur 28.9 59 0.002 23.4 3.6 27 117-144 9-36 (36)
26 1w6s_A Methanol dehydrogenase 28.4 85 0.0029 32.9 6.4 94 188-281 61-193 (599)
27 3a0c_A Mannose/sialic acid-bin 28.3 2E+02 0.007 23.2 7.4 56 201-257 21-81 (110)
28 1yiq_A Quinohemoprotein alcoho 28.1 79 0.0027 33.3 6.1 93 188-281 69-194 (689)
29 3gn4_A Myosin-VI; unconvention 26.9 35 0.0012 31.0 2.7 22 46-67 44-65 (148)
30 3no2_A Uncharacterized protein 25.1 1.3E+02 0.0046 27.3 6.4 15 384-398 254-268 (276)
31 1kb0_A Quinohemoprotein alcoho 25.1 99 0.0034 32.4 6.1 94 188-281 76-201 (677)
32 1bba_A Bovine pancreatic polyp 24.4 63 0.0022 23.3 3.1 27 117-144 9-36 (36)
33 3nok_A Glutaminyl cyclase; bet 24.2 1.5E+02 0.005 28.8 6.7 83 199-281 106-212 (268)
34 3sao_A Extracellular fatty aci 22.9 2.2E+02 0.0074 24.0 6.9 32 282-313 118-149 (160)
35 1kv9_A Type II quinohemoprotei 22.6 1.1E+02 0.0036 32.1 5.8 92 188-281 65-189 (668)
36 3r0e_A Lectin; carbohydrate bi 22.2 2.2E+02 0.0074 23.2 6.5 42 200-243 21-66 (109)
37 3mez_A Mannose-specific lectin 22.1 2.9E+02 0.0099 22.5 7.3 43 200-243 20-67 (111)
38 1qbf_A Peptide YY, PYY; PP-fol 21.4 11 0.00037 27.3 -1.4 28 117-145 9-37 (37)
39 2ad6_A Methanol dehydrogenase 21.0 1.8E+02 0.006 29.9 6.9 94 188-281 61-187 (571)
40 1i84_S Smooth muscle myosin he 20.4 53 0.0018 37.4 3.1 23 46-68 791-813 (1184)
41 1i84_S Smooth muscle myosin he 20.3 41 0.0014 38.3 2.3 25 47-80 818-842 (1184)
No 1
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.70 E-value=0.0073 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHhhhhHHHHhhccCc
Q 012196 45 SDNNSATKLQKFYKSYRTRRNLADC 69 (468)
Q Consensus 45 e~~~AA~~iQk~Yr~yRtRR~lad~ 69 (468)
.++.||+.||+.||+|+.||.+...
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~~ 28 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKHA 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4668999999999999999987643
No 2
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.53 E-value=0.0085 Score=40.55 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhhhHHHHhhc
Q 012196 45 SDNNSATKLQKFYKSYRTRRNL 66 (468)
Q Consensus 45 e~~~AA~~iQk~Yr~yRtRR~l 66 (468)
.++.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999865
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=94.26 E-value=0.023 Score=42.56 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhhhhHHHHhhccCc--chhhhHhhHHh
Q 012196 44 ESDNNSATKLQKFYKSYRTRRNLADC--AVVVEELWWKE 80 (468)
Q Consensus 44 ~e~~~AA~~iQk~Yr~yRtRR~lad~--av~~~e~ww~~ 80 (468)
+.+..||++||+.||+|..|+..... +++.-+.||+.
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999876543 45555677764
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.11 Score=37.21 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhhhHHHHhh
Q 012196 47 NNSATKLQKFYKSYRTRRN 65 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~ 65 (468)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4589999999999988875
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=86.43 E-value=0.34 Score=34.71 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhhHHHHhhccCc----chhhhHhhHH
Q 012196 47 NNSATKLQKFYKSYRTRRNLADC----AVVVEELWWK 79 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~lad~----av~~~e~ww~ 79 (468)
..||+.||+.+|||-.|++.... +.+.-+.+|+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~R 39 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYR 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999987543 4445556665
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=82.18 E-value=0.81 Score=34.02 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhhhhHHHHhhccC
Q 012196 46 DNNSATKLQKFYKSYRTRRNLAD 68 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~lad 68 (468)
...||++||..+|||..|+.+..
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999987653
No 7
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=81.00 E-value=0.76 Score=42.38 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhhhhHHHHhhccC
Q 012196 46 DNNSATKLQKFYKSYRTRRNLAD 68 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~lad 68 (468)
...||..||+.||.|+-||+...
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 66799999999999999987654
No 8
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=60.84 E-value=22 Score=32.78 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred eCCeEEEccCCceE-eccCCCeEEEEEcCCCceEEeeccCCccccccc-----CCCCcceeeeeEEEe--cceEEEecCC
Q 012196 207 ENGKLLYRQSRVCV-STVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSF-----LAGGATIASGRLVVL--DGILEAIWPF 278 (468)
Q Consensus 207 edGrL~y~~sG~~v-dTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSF-----LaGg~V~AAG~I~V~--nG~Lk~Isp~ 278 (468)
.+|+++|...-... .-.-.+..+||.+.+|.||+=..+.|.+....- ....++++-|.|.+- +|.|..+.+.
T Consensus 257 ~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 257 RSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp TTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred CCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECC
Confidence 36777665532111 111124568888888888888777776543221 123456677777775 6899999998
Q ss_pred CCCC
Q 012196 279 SGHY 282 (468)
Q Consensus 279 SGHY 282 (468)
+|..
T Consensus 337 tG~~ 340 (376)
T 3q7m_A 337 DGRF 340 (376)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 8863
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.83 E-value=3.7 Score=46.72 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhhhHHHHhhccC----cchhhhHhhHH
Q 012196 47 NNSATKLQKFYKSYRTRRNLAD----CAVVVEELWWK 79 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~lad----~av~~~e~ww~ 79 (468)
..||+.||+.||+|..|+.+.. .|++.-++||+
T Consensus 791 r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~R 827 (1080)
T 2dfs_A 791 RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQR 827 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHh
Confidence 4577777777777777665432 23334455554
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=59.59 E-value=5.3 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhHHHHhh
Q 012196 49 SATKLQKFYKSYRTRRN 65 (468)
Q Consensus 49 AA~~iQk~Yr~yRtRR~ 65 (468)
||..||..||.+..||.
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 11
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=59.50 E-value=4.9 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.548 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhHHHHh...
Q 012196 49 SATKLQKFYKSYRTRR... 64 (468)
Q Consensus 49 AA~~iQk~Yr~yRtRR... 64 (468)
|+..||..||.++.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 8999999999999874
No 12
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=59.45 E-value=2.4 Score=27.89 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhHHHHh
Q 012196 49 SATKLQKFYKSYRTRR 64 (468)
Q Consensus 49 AA~~iQk~Yr~yRtRR 64 (468)
||..||..||.++.||
T Consensus 7 AallI~d~~r~~k~~~ 22 (23)
T 3dve_B 7 AALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 8999999999998876
No 13
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=55.56 E-value=15 Score=35.91 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=37.1
Q ss_pred CcceEEEEeCCeEEEccCCceEeccCCCeEEEEEcCCCceEEeeccCCcccccccCCCCcceeeeeEEEecceEE
Q 012196 199 RETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILE 273 (468)
Q Consensus 199 Re~YeV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~V~nG~Lk 273 (468)
+...-++|+||++++..+.. ....+|.++.+|+++|+.... |+-.. ..=.-++.+|-+.|+||++.
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~~~~--~~~~~-~~~~~av~~gp~Lv~nG~~~ 174 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQADE--ALAHE-ANLLHALGGYGLLVKDGVVQ 174 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEEHHH--HHTTG-GGEEEEEEESCEEEETTEEC
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEecch--hhhhh-cCccEEEEcchhheECCeEc
Confidence 34445555666665543211 234689999999999996421 11000 00013666777888888873
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=54.89 E-value=6.5 Score=43.74 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHhhhhHHHHhhccCc-----chhhhHhhHHh
Q 012196 44 ESDNNSATKLQKFYKSYRTRRNLADC-----AVVVEELWWKE 80 (468)
Q Consensus 44 ~e~~~AA~~iQk~Yr~yRtRR~lad~-----av~~~e~ww~~ 80 (468)
+....+|++||+.+|+|..||++... |+++-+++|+.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999987643 55566677764
No 15
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=51.65 E-value=11 Score=28.47 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhhhHHHHhhc
Q 012196 47 NNSATKLQKFYKSYRTRRNL 66 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~l 66 (468)
..|+..||++.|+|=.+|+.
T Consensus 30 ~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 30 SVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 45666777777777777654
No 16
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=50.83 E-value=21 Score=35.29 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred hhhhccCccCCcceEEEEeCCeEEEccCCc----eEeccC----CCeEEEEE--cCCCceEEeeccCCcc---------c
Q 012196 189 QCIKYLGPKERETYEVVIENGKLLYRQSRV----CVSTVE----GSKWIFVL--STSRKLYVGEKKKGLF---------Q 249 (468)
Q Consensus 189 q~VkYLspeERe~YeV~IedGrL~y~~sG~----~vdTt~----~~kWIFVm--dtsg~LYVG~KkkG~F---------Q 249 (468)
..+-|++-.+-.-|-+-.++|+++|..... ++.+.. .+..+||. ..+|+||+-....|.- -
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 344555555555555555688888887654 222211 12357777 4699999977544421 1
Q ss_pred ccc-cC-CCCcce-------eeeeEEE--ecceEEEecCCCCC
Q 012196 250 HSS-FL-AGGATI-------ASGRLVV--LDGILEAIWPFSGH 281 (468)
Q Consensus 250 HSS-FL-aGg~V~-------AAG~I~V--~nG~Lk~Isp~SGH 281 (468)
++| |. .|.+|+ .-|.+.+ .+|.|-+|...+|-
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 222 33 566666 6676665 58999998888874
No 17
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=47.94 E-value=14 Score=27.90 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=8.9
Q ss_pred hHHHHHHHHhhhhHHHHhh
Q 012196 47 NNSATKLQKFYKSYRTRRN 65 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~ 65 (468)
..+++.||...|||=.|++
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~ 24 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKA 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 18
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=43.66 E-value=20 Score=26.49 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=24.0
Q ss_pred hcCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 012196 116 LGKGLCKDEKAQKL-ALRHWLEAIDPRHRYG 145 (468)
Q Consensus 116 vGkGlskd~kAq~L-~lqhwLE~iDprHRYG 145 (468)
-|.+.|.++-||=+ +|+|.+.+| -|+|||
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinlv-TR~RyG 41 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNLV-TRQRYX 41 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH-TTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 47888999999877 699999998 489998
No 19
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=42.99 E-value=38 Score=31.12 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCceEEeeccCCcccccccC-----CCCcceeeeeEEEe--cceEEEec
Q 012196 226 SKWIFVLSTSRKLYVGEKKKGLFQHSSFL-----AGGATIASGRLVVL--DGILEAIW 276 (468)
Q Consensus 226 ~kWIFVmdtsg~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~I~V~--nG~Lk~Is 276 (468)
+..+||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 34689999999999888777876543323 23344556666663 56666653
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=42.94 E-value=10 Score=42.22 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhhhhHHHHhhccCcchhhhHhhHHhh
Q 012196 46 DNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKEL 81 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~lad~av~~~e~ww~~l 81 (468)
+..||++||+.+|+|..||+. .||+.+
T Consensus 804 ~r~a~~~IQ~~~R~~~~~r~~---------~w~~l~ 830 (837)
T 1kk8_A 804 QRIGLSVIQRNIRKWLVLRNW---------QWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcch---------HHHHHH
Confidence 357999999999999999875 388864
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.04 E-value=15 Score=41.99 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhhhHHHHhhcc
Q 012196 47 NNSATKLQKFYKSYRTRRNLA 67 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~la 67 (468)
..||+.||..+|+|..|+++.
T Consensus 839 r~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 839 RDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665544
No 22
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=36.45 E-value=11 Score=27.30 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=21.9
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 012196 117 GKGLCKDEKAQKL-ALRHWLEAIDPRHRYG 145 (468)
Q Consensus 117 GkGlskd~kAq~L-~lqhwLE~iDprHRYG 145 (468)
|.+.+.++-||-+ +|+|+|.+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677888888776 799999988 478887
No 23
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=32.93 E-value=17 Score=30.18 Aligned_cols=18 Identities=11% Similarity=0.545 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhHHHHhh
Q 012196 48 NSATKLQKFYKSYRTRRN 65 (468)
Q Consensus 48 ~AA~~iQk~Yr~yRtRR~ 65 (468)
=||..||..||.||.|++
T Consensus 64 YA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 64 YATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 499999999999998864
No 24
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=30.91 E-value=21 Score=39.50 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHhhhhHHHHhhcc
Q 012196 45 SDNNSATKLQKFYKSYRTRRNLA 67 (468)
Q Consensus 45 e~~~AA~~iQk~Yr~yRtRR~la 67 (468)
....+|++||+++|+|..||+..
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~~ 788 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKYM 788 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999998754
No 25
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=28.94 E-value=59 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=22.0
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCccc
Q 012196 117 GKGLCKDEKAQKL-ALRHWLEAIDPRHRY 144 (468)
Q Consensus 117 GkGlskd~kAq~L-~lqhwLE~iDprHRY 144 (468)
|.+.+.++-||-. +|+|+|.+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6778889998776 7999999984 6676
No 26
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=28.41 E-value=85 Score=32.95 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred chhhhccCcc-CCcceEEEE-eCCeEEEccCCceE-e--------------cc--CCC---eEEEEEcCCCceEEeeccC
Q 012196 188 HQCIKYLGPK-ERETYEVVI-ENGKLLYRQSRVCV-S--------------TV--EGS---KWIFVLSTSRKLYVGEKKK 245 (468)
Q Consensus 188 ~q~VkYLspe-ERe~YeV~I-edGrL~y~~sG~~v-d--------------Tt--~~~---kWIFVmdtsg~LYVG~Kkk 245 (468)
...+-|+.-. ...-|-+-. .+|+++|..+-..- . +. .++ .-|||.+.+++||+=..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 3445566544 445566666 68999988753210 0 01 111 2389998899999987766
Q ss_pred Cccccc---------ccCCCCcceeeeeEEEe--------cceEEEecCCCCC
Q 012196 246 GLFQHS---------SFLAGGATIASGRLVVL--------DGILEAIWPFSGH 281 (468)
Q Consensus 246 G~FQHS---------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 281 (468)
|...-+ ....+.++++-|.|.|- +|.|..+...+|.
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence 754322 13445677777887774 5899999999996
No 27
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=28.32 E-value=2e+02 Score=23.24 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=32.5
Q ss_pred ceEEEE-eCCeEEEccCCceEeccC----CCeEEEEEcCCCceEEeeccCCcccccccCCCC
Q 012196 201 TYEVVI-ENGKLLYRQSRVCVSTVE----GSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGG 257 (468)
Q Consensus 201 ~YeV~I-edGrL~y~~sG~~vdTt~----~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg 257 (468)
.|.+.+ .||.|+.-.++.++-.+. ......+|..+|+|.+-.. .|..-=+||..+.
T Consensus 21 ~~~l~~~~dGnlvl~~~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~-~~~~~W~S~t~~~ 81 (110)
T 3a0c_A 21 SYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQ-SNRVIWQTKTNGK 81 (110)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TCCEEEECCCCCS
T ss_pred CEEEEEcCCCcEEEEECCEEEEECCCCCCCCcEEEEEeCCCCEEEECC-CCcEEEecCCCCC
Confidence 455655 366665333455553221 2234678888999988754 3555566777654
No 28
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=28.14 E-value=79 Score=33.26 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=57.8
Q ss_pred chhhhccCccCCcceEEEEeCCeEEEccCCceEe---------------ccCCCeEEEEEcCCCceEEeeccCCccc---
Q 012196 188 HQCIKYLGPKERETYEVVIENGKLLYRQSRVCVS---------------TVEGSKWIFVLSTSRKLYVGEKKKGLFQ--- 249 (468)
Q Consensus 188 ~q~VkYLspeERe~YeV~IedGrL~y~~sG~~vd---------------Tt~~~kWIFVmdtsg~LYVG~KkkG~FQ--- 249 (468)
...+-|++-....-|-+-..+|+++|..+-..-. +. .+.-|||.+.++.||+=..+.|...
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 3445566543323333333489999987532110 00 1345888888999998877666532
Q ss_pred -c------cccCCCCcceeeeeEEEe--------cceEEEecCCCCC
Q 012196 250 -H------SSFLAGGATIASGRLVVL--------DGILEAIWPFSGH 281 (468)
Q Consensus 250 -H------SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 281 (468)
. .....+.+++.-|.+.|- +|.|..++..+|-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 1 123455777777888774 5789999999886
No 29
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=26.91 E-value=35 Score=31.00 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhhhhHHHHhhcc
Q 012196 46 DNNSATKLQKFYKSYRTRRNLA 67 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~la 67 (468)
...|+++|||+-|+|-+|+.-.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999998643
No 30
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=25.13 E-value=1.3e+02 Score=27.30 Aligned_cols=15 Identities=7% Similarity=0.457 Sum_probs=11.1
Q ss_pred cccccCCCCCceeec
Q 012196 384 RKIWTTGAGPRISCV 398 (468)
Q Consensus 384 s~kWstgaGpRIgcv 398 (468)
.+.|+-...+++|-+
T Consensus 254 ~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 254 KVVWQLNDKVKFGMI 268 (276)
T ss_dssp BEEEEECCTTTSCCC
T ss_pred CEEEEecCcccccce
Confidence 348888888888754
No 31
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=25.07 E-value=99 Score=32.44 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=57.3
Q ss_pred chhhhccCccCCcceEEEEeCCeEEEccCCceEe---------cc-C----CCeEEEEEcCCCceEEeeccCCcccc---
Q 012196 188 HQCIKYLGPKERETYEVVIENGKLLYRQSRVCVS---------TV-E----GSKWIFVLSTSRKLYVGEKKKGLFQH--- 250 (468)
Q Consensus 188 ~q~VkYLspeERe~YeV~IedGrL~y~~sG~~vd---------Tt-~----~~kWIFVmdtsg~LYVG~KkkG~FQH--- 250 (468)
...+-|+.-....-|-+-..+|+++|..+-..-. .. . .+.-|||.+.+++||+=..+.|...-
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 4445566544333333333489999987533110 00 0 24468888888999988766664321
Q ss_pred -------cccCCCCcceeeeeEEEe--------cceEEEecCCCCC
Q 012196 251 -------SSFLAGGATIASGRLVVL--------DGILEAIWPFSGH 281 (468)
Q Consensus 251 -------SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 281 (468)
.....+.+++.-|.|.|- +|.|..++..+|.
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 123445666677777774 5889999998886
No 32
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=24.41 E-value=63 Score=23.28 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=21.8
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCccc
Q 012196 117 GKGLCKDEKAQKL-ALRHWLEAIDPRHRY 144 (468)
Q Consensus 117 GkGlskd~kAq~L-~lqhwLE~iDprHRY 144 (468)
|.+.+.++-||-. +|+|+|.+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6778888888766 7999999985 6666
No 33
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=24.19 E-value=1.5e+02 Score=28.81 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=44.2
Q ss_pred CcceEEEEeCCeE-EEc-cCCceEecc----------CCCeEEEEEcCCCceEEeeccCCcccccccC--CCCcce----
Q 012196 199 RETYEVVIENGKL-LYR-QSRVCVSTV----------EGSKWIFVLSTSRKLYVGEKKKGLFQHSSFL--AGGATI---- 260 (468)
Q Consensus 199 Re~YeV~IedGrL-~y~-~sG~~vdTt----------~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL--aGg~V~---- 260 (468)
..-|.+...++++ +|+ .+++++.|. .+++++||.|.+++|++=.-+..+...+=-+ .|.++.
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 4445554445544 344 245555442 2467888888888888765444433332111 222322
Q ss_pred ---eeeeEEEe---cceEEEecCCCCC
Q 012196 261 ---ASGRLVVL---DGILEAIWPFSGH 281 (468)
Q Consensus 261 ---AAG~I~V~---nG~Lk~Isp~SGH 281 (468)
+.|+|-+. ...|..|.|.+|-
T Consensus 186 Le~~dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 186 LECANGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEETTEEEEEETTCSEEEEECTTTCB
T ss_pred cEEeCCEEEEEECCCCeEEEEeCCCCc
Confidence 34665554 3566777776664
No 34
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=22.89 E-value=2.2e+02 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCceecCCCC
Q 012196 282 YRPTEENFMEFCSFLEDHQVDLTNVKKHPIDD 313 (468)
Q Consensus 282 YRPt~enf~~Fv~~L~e~GVDLs~Vk~~~~d~ 313 (468)
=.++.+-+..|.+++++.|++.+++-..+-++
T Consensus 118 ~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~~ 149 (160)
T 3sao_A 118 REVSPTAMAIFRKLARERNYTDEMVAVLPSQA 149 (160)
T ss_dssp SSCCHHHHHHHHHHHHTTTCCGGGEEECCCCS
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEECCCCC
Confidence 34678999999999999999999987765433
No 35
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=22.57 E-value=1.1e+02 Score=32.09 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=55.9
Q ss_pred chhhhccCccCCcceEEEEe--CCeEEEccCCceE-e--------c-cC----CCeEEEEEcCCCceEEeeccCCccccc
Q 012196 188 HQCIKYLGPKERETYEVVIE--NGKLLYRQSRVCV-S--------T-VE----GSKWIFVLSTSRKLYVGEKKKGLFQHS 251 (468)
Q Consensus 188 ~q~VkYLspeERe~YeV~Ie--dGrL~y~~sG~~v-d--------T-t~----~~kWIFVmdtsg~LYVG~KkkG~FQHS 251 (468)
...+-|++-.. ...+.++ +|+++|..+-..- . . .. .+.-|||.+.++.||+=..+.|...-+
T Consensus 65 ~~g~vyv~~~~--~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 65 HDGVIYTSMSW--SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp ETTEEEEEEGG--GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEECCC--CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 34445665432 2334444 8999998753210 0 0 00 133588888889999887666653321
Q ss_pred ---------ccCCCCcceeeeeEEEe--------cceEEEecCCCCC
Q 012196 252 ---------SFLAGGATIASGRLVVL--------DGILEAIWPFSGH 281 (468)
Q Consensus 252 ---------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 281 (468)
....+.+++.-|.+.|- +|.|..+...+|.
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 23445677777887774 4789999998885
No 36
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=22.20 E-value=2.2e+02 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.292 Sum_probs=25.6
Q ss_pred cceEEEE-eCCeEEEccCCceE--eccC-CCeEEEEEcCCCceEEeec
Q 012196 200 ETYEVVI-ENGKLLYRQSRVCV--STVE-GSKWIFVLSTSRKLYVGEK 243 (468)
Q Consensus 200 e~YeV~I-edGrL~y~~sG~~v--dTt~-~~kWIFVmdtsg~LYVG~K 243 (468)
-.|.+.+ .||.|+.- ++ .- +|.. ......+|+.+|+|++-..
T Consensus 21 g~~~L~~q~dGNLvl~-~~-~Wssnt~~~~~~~~l~l~~dGnLvl~d~ 66 (109)
T 3r0e_A 21 GDFDLVMQDDCNLVLY-NG-NWQSNTANNGRDCKLTLTDYGELVIKNG 66 (109)
T ss_dssp TTEEEEECTTSCEEEE-TT-TEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEecCCeEEEE-eC-eEEcCCCCCCCcEEEEEcCCCeEEEEeC
Confidence 5677777 58887642 22 12 2222 1235678899999998754
No 37
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.09 E-value=2.9e+02 Score=22.45 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=26.7
Q ss_pred cceEEEE-eCCeEE-EccCCceEec--cC-CCeEEEEEcCCCceEEeec
Q 012196 200 ETYEVVI-ENGKLL-YRQSRVCVST--VE-GSKWIFVLSTSRKLYVGEK 243 (468)
Q Consensus 200 e~YeV~I-edGrL~-y~~sG~~vdT--t~-~~kWIFVmdtsg~LYVG~K 243 (468)
-.|.+.+ .||.|+ |..++ .-.| .. ......+|..+|+|++-..
T Consensus 20 g~~~L~~q~dGnLvl~~~~~-vW~snt~~~~~~~~l~l~~dGNLVl~~~ 67 (111)
T 3mez_A 20 ESAAFVMQGDCNLVLYNEAG-GFQSNTHGRGVDCTLRLNNRGQLEIHSA 67 (111)
T ss_dssp TTEEEEECTTSCEEEECSSC-CEECCCTTSCSSCEEEECTTSCEEEECS
T ss_pred CCEEEEEccCCeEEEECCCC-EEECCcccCCcCEEEEEcCCCcEEEEeC
Confidence 4577877 578775 44444 3322 21 1225678899999998754
No 38
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=21.35 E-value=11 Score=27.34 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=19.3
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 012196 117 GKGLCKDEKAQKL-ALRHWLEAIDPRHRYG 145 (468)
Q Consensus 117 GkGlskd~kAq~L-~lqhwLE~iDprHRYG 145 (468)
|.+.+.++-||=+ +|+|+|.+| -|+|||
T Consensus 9 g~da~pEela~Y~~~Lr~Yinlv-TR~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLV-TRQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHT-SSSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 4555666666555 688999888 478887
No 39
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=21.00 E-value=1.8e+02 Score=29.93 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=58.4
Q ss_pred chhhhccCcc-CCcceEEEE-eCCeEEEccCCceE------------ecc--CCCeEEEEEcCCCceEEeeccCCccccc
Q 012196 188 HQCIKYLGPK-ERETYEVVI-ENGKLLYRQSRVCV------------STV--EGSKWIFVLSTSRKLYVGEKKKGLFQHS 251 (468)
Q Consensus 188 ~q~VkYLspe-ERe~YeV~I-edGrL~y~~sG~~v------------dTt--~~~kWIFVmdtsg~LYVG~KkkG~FQHS 251 (468)
...+-|+.-. ...-|-+-. .+|+++|..+-..- ... -.+.-+||.+.++.||+=..+.|...-+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 3445566544 455566666 68999988642210 000 0134588888889999877666643211
Q ss_pred ----c-----cCCCCcceeeeeEEEe--------cceEEEecCCCCC
Q 012196 252 ----S-----FLAGGATIASGRLVVL--------DGILEAIWPFSGH 281 (468)
Q Consensus 252 ----S-----FLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 281 (468)
. .....+++.-|.|.|- +|.|..+...+|.
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 1 2344566667777764 5799999999996
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.39 E-value=53 Score=37.42 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.4
Q ss_pred hhHHHHHHHHhhhhHHHHhhccC
Q 012196 46 DNNSATKLQKFYKSYRTRRNLAD 68 (468)
Q Consensus 46 ~~~AA~~iQk~Yr~yRtRR~lad 68 (468)
...+|+.||+++|+|..||...-
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k 813 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAK 813 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988753
No 41
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.29 E-value=41 Score=38.26 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhhhHHHHhhccCcchhhhHhhHHh
Q 012196 47 NNSATKLQKFYKSYRTRRNLADCAVVVEELWWKE 80 (468)
Q Consensus 47 ~~AA~~iQk~Yr~yRtRR~lad~av~~~e~ww~~ 80 (468)
..|+++||+.+|+|..||+. .||+.
T Consensus 818 ~~a~~~iQ~~~r~~~~~k~~---------~~~rl 842 (1184)
T 1i84_S 818 LESIFCIQYNVRSFMNVXHW---------PWMXL 842 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHH
Confidence 47999999999999999874 38876
Done!