BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012197
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 58.5 bits (140), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 395 AALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPI 454
+ S Q EI+ ++++ RLQ EK LC+IC + I I+ +PC H + C+ C E KCP+
Sbjct: 4 GSTSLQKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPM 60
Query: 455 CRVFIEERLPIY 466
C I + I+
Sbjct: 61 CYTVITFKQKIF 72
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 395 AALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPI 454
+ S Q EI+ ++++ RLQ EK LC+IC + I I+ +PC H + C+ C E KCP+
Sbjct: 4 GSTSLQKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPM 60
Query: 455 CRVFI 459
C I
Sbjct: 61 CYTVI 65
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 400 QSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFI 459
Q EI+ ++++ RLQ EK LC+IC + I I+ +PC H + C+ C E KCP+C I
Sbjct: 10 QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 66
Query: 460 EERLPIY 466
+ I+
Sbjct: 67 TFKQKIF 73
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 408 QQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIE 460
+++ RLQ E+ C++C +++++I+ +PC H ++C+ C +KCPICR I+
Sbjct: 15 EEQLRRLQEERT-CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIK 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 408 QQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIE 460
+++ RLQ E+ C++C +++++++ +PC H ++C+ C +KCPICR I+
Sbjct: 286 EEQLRRLQEERT-CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIK 337
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 409 QEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIY 466
QE R E +LC +C EE+IN PC H + C +C + + CP+CR +E +Y
Sbjct: 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 421 CRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPI 465
C +C +N +LLPCRH LC C + ++CP+CR F++E +
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 408 QQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIY 466
+ + RLQ E+ C++C + ++I+ +PC H++C C + CPICR + R+ +
Sbjct: 4 EAQLRRLQEERT-CKVCLDRAVSIVFVPC-GHLVCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C + + CP CR
Sbjct: 10 TQEQYELYCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCE 68
Query: 459 IEERLPI 465
I+ PI
Sbjct: 69 IKGTEPI 75
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C + + CP CR
Sbjct: 320 TQEQYELXCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCE 378
Query: 459 IEERLPI 465
I+ PI
Sbjct: 379 IKGTEPI 385
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C + + CP CR
Sbjct: 318 TQEQYELYCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCE 376
Query: 459 IEERLPI 465
I+ PI
Sbjct: 377 IKGTEPI 383
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.4 bits (80), Expect = 0.077, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKK-----CPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C ++ CP CR
Sbjct: 12 TQEQYELXCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTAWQESDGQGCPFCRCE 70
Query: 459 IEERLPI 465
I+ PI
Sbjct: 71 IKGTEPI 77
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C + + CP CR
Sbjct: 318 TQEQYELYCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCE 376
Query: 459 IEERLPI 465
I+ PI
Sbjct: 377 IKGTEPI 383
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 407 SQQEYE---RLQTEKILCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVF 458
+Q++YE + + LC+IC E ++ + PC H++C +C + CP CR
Sbjct: 324 TQEQYELYCEMGSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTAWQESDGQGCPFCRCE 382
Query: 459 IEERLPI 465
I+ PI
Sbjct: 383 IKGTEPI 389
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 420 LCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVFIEERLPI 465
LC+IC E ++ + PC H++C +C + + CP CR I+ PI
Sbjct: 29 LCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 78
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 420 LCRICFEEQINILLLPCRHHILCRTC-----GEKCKKCPICRVFIEERLPI 465
LC+IC E ++ + PC H++C +C + + CP CR I+ PI
Sbjct: 336 LCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 415 QTEKILCRIC---FEEQINILLLPCRHHILCRTCGEKCKK----CPICR 456
Q+E+ LC +C FE + + +LPC H + C +K K CPICR
Sbjct: 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAK-CVDKWLKANRTCPICR 67
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 393 LQAALSAQSEITMYSQQEYERLQTEK--------------ILCRICFEEQINILLLPCRH 438
+A + A+++ +++E E++Q +K + C IC E I + L C H
Sbjct: 14 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH 73
Query: 439 HILCRTCGEKCKK----CPICRVFIEER 462
C C + K CPICR I+ +
Sbjct: 74 S-FCSYCINEWMKRKIECPICRKDIKSK 100
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 393 LQAALSAQSEITMYSQQEYERLQTEK--------------ILCRICFEEQINILLLPCRH 438
+A + A+++ +++E E++Q +K + C IC E I + L C H
Sbjct: 14 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH 73
Query: 439 HILCRTCGEKCKK----CPICRVFIEER 462
C C + K CPICR I+ +
Sbjct: 74 S-FCSYCINEWMKRKIECPICRKDIKSK 100
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.6 bits (70), Expect = 0.95, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 393 LQAALSAQSEITMYSQQEYERLQTEK--------------ILCRICFEEQINILLLPCRH 438
+A + A+++ +++E E++Q +K + C IC E I + L C H
Sbjct: 25 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH 84
Query: 439 HILCRTCGEKCKK----CPICRVFIEER 462
C C + K CPICR I+ +
Sbjct: 85 S-FCSYCINEWMKRKIECPICRKDIKSK 111
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 421 CRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEE 461
C IC + ++ + LPC+ H+ C C + K+C +CR I E
Sbjct: 18 CAICLQTCVHPVSLPCK-HVFCYLCVKGASWLGKRCALCRQEIPE 61
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 421 CRICF---EEQINILLLPCRHHILCRTCGEK----CKKCPICRVFIEERLP 464
C IC EE ++ LPC H + + C ++ KKCPICRV IE +LP
Sbjct: 17 CTICLSILEEGEDVRRLPCMH-LFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|1U9N|A Chain A, Crystal Structure Of The Transcriptional Regulator Ethr In
A Ligand Bound Conformation Opens Therapeutic
Perspectives Against Tuberculosis And Leprosy
Length = 236
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 113 LPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWV 155
LP L TA+ + N R A G++ S+ + + +TL H WV
Sbjct: 186 LPAHELATALNLXNERTLFASFAGEQPSVPEARVLDTLVHIWV 228
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKCKK-----------CPICRV 457
E++ C IC E L L C H LCR C K CP+C +
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGI 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,449,847
Number of Sequences: 62578
Number of extensions: 518434
Number of successful extensions: 1158
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 32
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)