Query 012197
Match_columns 468
No_of_seqs 385 out of 1515
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 00:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10269 Tmemb_185A: Transmemb 100.0 2.1E-42 4.5E-47 337.0 12.5 233 35-295 1-238 (238)
2 KOG3879 Predicted membrane pro 100.0 2.1E-33 4.6E-38 261.6 11.4 187 84-316 6-192 (267)
3 KOG1101 Apoptosis inhibitor IA 99.6 2.9E-16 6.4E-21 141.6 3.9 80 300-394 20-100 (147)
4 KOG3879 Predicted membrane pro 99.6 9.8E-15 2.1E-19 137.1 12.6 170 20-199 5-178 (267)
5 PF10269 Tmemb_185A: Transmemb 99.5 1.9E-13 4E-18 133.7 12.5 170 19-191 48-237 (238)
6 KOG4265 Predicted E3 ubiquitin 99.3 6.7E-13 1.4E-17 133.1 0.2 75 390-467 265-343 (349)
7 smart00238 BIR Baculoviral inh 99.2 6.4E-12 1.4E-16 99.9 1.3 50 313-366 18-68 (71)
8 PF00653 BIR: Inhibitor of Apo 99.2 3.6E-12 7.7E-17 101.3 -0.2 50 312-365 17-67 (70)
9 KOG4275 Predicted E3 ubiquitin 99.1 7.8E-12 1.7E-16 121.6 0.2 51 418-468 300-350 (350)
10 PF13920 zf-C3HC4_3: Zinc fing 99.1 1.7E-11 3.7E-16 90.9 1.5 45 418-462 2-50 (50)
11 KOG4172 Predicted E3 ubiquitin 99.1 4.1E-12 8.8E-17 93.7 -2.9 49 419-467 8-61 (62)
12 cd00022 BIR Baculoviral inhibi 99.1 2.5E-11 5.4E-16 96.0 1.3 51 312-366 15-66 (69)
13 KOG1571 Predicted E3 ubiquitin 98.8 1.3E-09 2.8E-14 109.8 2.4 51 417-467 304-354 (355)
14 KOG1100 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 95.6 2.9 57 410-467 151-207 (207)
15 PLN03208 E3 ubiquitin-protein 98.2 9.7E-07 2.1E-11 82.9 2.6 49 417-466 17-87 (193)
16 KOG0823 Predicted E3 ubiquitin 98.0 4.9E-06 1.1E-10 79.6 3.0 52 415-467 44-104 (230)
17 PF13923 zf-C3HC4_2: Zinc fing 97.9 4.3E-06 9.4E-11 58.6 1.2 34 421-455 1-39 (39)
18 KOG1785 Tyrosine kinase negati 97.9 2.9E-06 6.3E-11 86.2 0.3 52 413-465 364-421 (563)
19 KOG0317 Predicted E3 ubiquitin 97.8 4.7E-06 1E-10 82.0 0.9 46 417-463 238-287 (293)
20 PF14634 zf-RING_5: zinc-RING 97.8 9.2E-06 2E-10 58.5 2.2 37 420-457 1-44 (44)
21 PHA02929 N1R/p28-like protein; 97.8 1.2E-05 2.7E-10 78.4 2.6 48 417-465 173-232 (238)
22 KOG0320 Predicted E3 ubiquitin 97.7 9.5E-06 2.1E-10 74.7 1.2 49 417-466 130-186 (187)
23 PF13639 zf-RING_2: Ring finge 97.6 2.3E-05 5E-10 56.2 1.1 36 420-456 2-44 (44)
24 smart00184 RING Ring finger. E 97.4 9.6E-05 2.1E-09 50.0 2.4 34 421-455 1-39 (39)
25 cd00162 RING RING-finger (Real 97.4 0.00015 3.3E-09 50.9 2.9 39 420-459 1-45 (45)
26 PF15227 zf-C3HC4_4: zinc fing 97.3 0.00011 2.4E-09 52.5 1.8 34 421-455 1-42 (42)
27 PHA02926 zinc finger-like prot 97.3 7.9E-05 1.7E-09 71.1 1.3 46 417-463 169-233 (242)
28 PF00097 zf-C3HC4: Zinc finger 97.3 9.2E-05 2E-09 52.1 1.2 34 421-455 1-41 (41)
29 KOG4692 Predicted E3 ubiquitin 97.3 8.7E-05 1.9E-09 74.7 1.2 46 416-462 420-469 (489)
30 KOG2164 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 76.7 1.8 48 418-466 186-244 (513)
31 KOG0978 E3 ubiquitin ligase in 97.1 0.00019 4E-09 79.2 1.7 49 417-466 642-697 (698)
32 COG5574 PEX10 RING-finger-cont 97.0 0.00021 4.6E-09 69.7 1.2 43 417-460 214-262 (271)
33 TIGR00599 rad18 DNA repair pro 97.0 0.00026 5.6E-09 74.0 1.7 44 417-461 25-72 (397)
34 COG5236 Uncharacterized conser 97.0 0.00029 6.3E-09 70.9 1.4 51 412-463 55-111 (493)
35 smart00504 Ubox Modified RING 96.9 0.00056 1.2E-08 52.4 2.5 42 419-461 2-47 (63)
36 PF13445 zf-RING_UBOX: RING-ty 96.6 0.00078 1.7E-08 48.4 0.9 27 421-449 1-31 (43)
37 PF14447 Prok-RING_4: Prokaryo 96.6 0.00093 2E-08 50.1 1.1 44 417-461 6-51 (55)
38 COG5432 RAD18 RING-finger-cont 96.5 0.0009 1.9E-08 66.0 1.2 43 418-461 25-71 (391)
39 KOG0287 Postreplication repair 96.5 0.00077 1.7E-08 67.8 0.3 44 417-461 22-69 (442)
40 KOG2177 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 64.2 1.2 40 417-457 12-55 (386)
41 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0037 8E-08 63.7 2.7 49 410-459 279-344 (491)
42 COG5540 RING-finger-containing 95.9 0.0063 1.4E-07 60.6 3.4 43 417-460 322-372 (374)
43 PF14835 zf-RING_6: zf-RING of 95.9 0.0034 7.3E-08 48.7 1.1 42 417-459 6-50 (65)
44 PF12678 zf-rbx1: RING-H2 zinc 95.2 0.013 2.9E-07 46.8 2.3 36 420-456 21-73 (73)
45 KOG0802 E3 ubiquitin ligase [P 95.1 0.013 2.9E-07 64.2 2.8 44 416-460 289-341 (543)
46 KOG4159 Predicted E3 ubiquitin 94.9 0.018 3.8E-07 60.5 2.9 44 417-461 83-130 (398)
47 KOG4628 Predicted E3 ubiquitin 93.4 0.047 1E-06 56.1 2.3 43 419-462 230-280 (348)
48 KOG3002 Zn finger protein [Gen 93.2 0.044 9.6E-07 55.5 1.7 43 417-461 47-92 (299)
49 PF04564 U-box: U-box domain; 93.0 0.06 1.3E-06 42.9 2.0 45 417-462 3-52 (73)
50 COG5152 Uncharacterized conser 92.9 0.029 6.2E-07 52.8 -0.1 45 419-464 197-245 (259)
51 KOG1039 Predicted E3 ubiquitin 92.6 0.053 1.2E-06 55.9 1.5 46 417-463 160-224 (344)
52 KOG0828 Predicted E3 ubiquitin 92.3 0.039 8.6E-07 58.3 0.0 44 417-461 570-635 (636)
53 KOG1813 Predicted E3 ubiquitin 92.1 0.055 1.2E-06 54.0 0.7 43 420-463 243-289 (313)
54 KOG1814 Predicted E3 ubiquitin 92.1 0.087 1.9E-06 54.8 2.2 36 412-448 178-216 (445)
55 KOG0311 Predicted E3 ubiquitin 91.0 0.031 6.8E-07 56.9 -2.2 46 417-463 42-93 (381)
56 KOG2879 Predicted E3 ubiquitin 90.9 0.17 3.8E-06 50.0 2.8 44 416-460 237-287 (298)
57 KOG2932 E3 ubiquitin ligase in 90.1 0.085 1.8E-06 52.9 -0.1 43 420-464 92-138 (389)
58 KOG3039 Uncharacterized conser 89.8 0.35 7.6E-06 47.2 3.8 45 417-462 220-272 (303)
59 KOG1001 Helicase-like transcri 88.6 0.17 3.7E-06 56.8 0.9 41 419-461 455-501 (674)
60 KOG0297 TNF receptor-associate 85.2 0.37 8.1E-06 50.8 1.1 46 417-463 20-70 (391)
61 PF04641 Rtf2: Rtf2 RING-finge 84.8 0.64 1.4E-05 46.2 2.5 45 416-461 111-162 (260)
62 KOG0804 Cytoplasmic Zn-finger 84.0 0.57 1.2E-05 49.4 1.8 40 417-457 174-219 (493)
63 PF03854 zf-P11: P-11 zinc fin 79.9 0.81 1.8E-05 33.5 0.8 43 420-464 4-50 (50)
64 KOG2113 Predicted RNA binding 79.5 1.6 3.4E-05 44.2 3.0 49 417-465 342-392 (394)
65 COG5220 TFB3 Cdk activating ki 78.9 0.61 1.3E-05 45.4 -0.1 39 418-457 10-61 (314)
66 KOG0825 PHD Zn-finger protein 78.1 0.56 1.2E-05 52.5 -0.7 45 418-463 123-174 (1134)
67 COG5175 MOT2 Transcriptional r 75.3 1 2.2E-05 45.9 0.3 44 417-461 13-65 (480)
68 PF14570 zf-RING_4: RING/Ubox 73.8 1.5 3.2E-05 32.3 0.8 38 421-459 1-47 (48)
69 KOG1002 Nucleotide excision re 73.5 0.89 1.9E-05 48.8 -0.6 42 417-459 535-585 (791)
70 PF12861 zf-Apc11: Anaphase-pr 73.4 2.7 5.9E-05 34.7 2.3 29 431-460 47-82 (85)
71 PF10367 Vps39_2: Vacuolar sor 71.3 4.5 9.7E-05 33.8 3.3 30 417-447 77-108 (109)
72 KOG2113 Predicted RNA binding 70.9 1.5 3.2E-05 44.4 0.2 49 417-465 135-188 (394)
73 KOG2114 Vacuolar assembly/sort 69.0 2.6 5.6E-05 47.9 1.6 45 419-464 841-887 (933)
74 smart00744 RINGv The RING-vari 68.6 3.9 8.4E-05 30.1 2.0 36 420-456 1-49 (49)
75 PF05290 Baculo_IE-1: Baculovi 68.5 2.1 4.5E-05 38.2 0.7 47 417-464 79-136 (140)
76 KOG2660 Locus-specific chromos 63.5 1.9 4.1E-05 44.0 -0.7 48 417-465 14-66 (331)
77 KOG1734 Predicted RING-contain 60.4 3.7 8E-05 40.8 0.8 31 430-461 246-282 (328)
78 PF04710 Pellino: Pellino; In 60.4 2.9 6.2E-05 43.7 0.0 48 418-466 328-410 (416)
79 KOG3579 Predicted E3 ubiquitin 58.1 3.7 8E-05 41.0 0.3 31 417-448 267-301 (352)
80 COG5219 Uncharacterized conser 55.4 10 0.00022 43.9 3.1 43 418-461 1469-1524(1525)
81 PF10272 Tmpp129: Putative tra 55.3 7.4 0.00016 40.6 2.0 19 416-434 269-287 (358)
82 PF11793 FANCL_C: FANCL C-term 54.0 3.6 7.8E-05 32.6 -0.4 12 450-461 56-67 (70)
83 KOG0826 Predicted E3 ubiquitin 51.3 5.5 0.00012 40.7 0.3 52 414-466 296-354 (357)
84 KOG3799 Rab3 effector RIM1 and 49.5 8.7 0.00019 34.3 1.2 26 417-447 64-89 (169)
85 KOG1428 Inhibitor of type V ad 47.0 9.7 0.00021 45.9 1.4 48 414-462 3482-3546(3738)
86 KOG2817 Predicted E3 ubiquitin 41.9 13 0.00028 39.0 1.3 49 418-467 334-394 (394)
87 KOG3161 Predicted E3 ubiquitin 40.8 10 0.00022 42.0 0.4 37 419-457 12-54 (861)
88 PF05883 Baculo_RING: Baculovi 40.3 10 0.00023 33.9 0.3 31 418-449 26-65 (134)
89 KOG2068 MOT2 transcription fac 40.1 18 0.0004 37.0 2.0 44 419-463 250-301 (327)
90 PHA02825 LAP/PHD finger-like p 39.8 14 0.00029 34.1 1.0 44 416-460 6-59 (162)
91 KOG3842 Adaptor protein Pellin 39.5 14 0.0003 37.7 1.0 42 418-461 341-415 (429)
92 PF10571 UPF0547: Uncharacteri 39.4 14 0.0003 23.6 0.7 15 442-456 3-21 (26)
93 COG1294 AppB Cytochrome bd-typ 34.0 2.5E+02 0.0054 29.3 9.2 171 108-309 85-262 (346)
94 PLN02189 cellulose synthase 33.4 26 0.00057 41.3 2.2 43 418-460 34-87 (1040)
95 KOG4445 Uncharacterized conser 32.1 25 0.00055 35.6 1.5 31 416-447 113-146 (368)
96 PF10217 DUF2039: Uncharacteri 30.6 11 0.00024 31.6 -1.1 38 417-459 54-91 (92)
97 KOG3476 Microtubule-associated 30.3 5.2 0.00011 33.0 -2.9 38 419-462 55-92 (100)
98 PF10235 Cript: Microtubule-as 30.2 27 0.00058 29.2 1.1 38 418-461 44-81 (90)
99 KOG4362 Transcriptional regula 28.3 17 0.00036 40.9 -0.5 42 419-461 22-70 (684)
100 COG5222 Uncharacterized conser 28.2 28 0.00061 35.2 1.1 38 419-457 275-318 (427)
101 PF11789 zf-Nse: Zinc-finger o 27.4 30 0.00065 26.3 0.9 36 418-454 11-53 (57)
102 KOG4218 Nuclear hormone recept 25.6 31 0.00068 35.6 0.9 26 417-446 14-39 (475)
103 COG5183 SSM4 Protein involved 24.5 23 0.0005 40.4 -0.3 45 416-460 10-66 (1175)
104 PF10083 DUF2321: Uncharacteri 23.9 27 0.00058 32.1 0.1 24 441-464 30-54 (158)
105 PF12911 OppC_N: N-terminal TM 22.2 1.5E+02 0.0032 21.7 3.9 8 10-17 5-12 (56)
106 PHA03096 p28-like protein; Pro 22.1 1E+02 0.0022 31.3 3.8 40 419-459 179-236 (284)
107 cd00729 rubredoxin_SM Rubredox 21.4 34 0.00074 23.1 0.2 16 449-464 18-33 (34)
No 1
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=100.00 E-value=2.1e-42 Score=336.97 Aligned_cols=233 Identities=45% Similarity=0.756 Sum_probs=184.4
Q ss_pred HhcCCCcccchhhHHHHHHHHHHHHhheeccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhcCcccccEehhhhh
Q 012197 35 LKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLP 114 (468)
Q Consensus 35 LklD~~i~wsW~~VF~PLwi~~~i~~~g~~~~~~~~~~~~~~w~~~~~~~~~lll~~F~~llc~kLe~~~~~~~~~Vf~P 114 (468)
||+||+++||||.||+|+|++|++++.|.+.+......+.+.++.+++...++++++||+++|.||++....+|++||+|
T Consensus 1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiP 80 (238)
T PF10269_consen 1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSSISWSIVFIP 80 (238)
T ss_pred CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCcceeeeeeec
Confidence 79999999999999999999999999988765544445566665555567789999999999999977777999999999
Q ss_pred HHHHHHHHH---HHHhhhhhccCCCCCCcchhhHHHhhcchhHHHHHHHHHHHHHhhhhhhccCceeeecceehhhHHHH
Q 012197 115 LLALETAIL---IDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGI 191 (468)
Q Consensus 115 l~~l~~~~~---v~~~~~c~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~i~l~LKLDg~~~~~~W~~vFiPlwi 191 (468)
+|++.+... ++.+|+ ++++++++++++.+.+++++...++++|++++++|++||||| .++||||+||+|+|+
T Consensus 81 L~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~-~i~~sW~~vFiPl~i 155 (238)
T PF10269_consen 81 LFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDG-VIDWSWWIVFIPLWI 155 (238)
T ss_pred hhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-cccccHHHHHHHHHH
Confidence 988886544 444444 777888889999988899999999999999999999999999 599999999999999
Q ss_pred HHHHHhhhhcccCCccccccccccCCCCCcceeeeeeeccceeecCCcchhhhhchhhHHHHHH--HHHHHHHHHHHHHH
Q 012197 192 AECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGG--HIMKIPFICFQIML 269 (468)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~ll~f~iLL 269 (468)
++++++++|..... ..+++.+ ++++...+|+ +.+....+.+ +++++|+++||+||
T Consensus 156 ~~~~~~~~~~~~~i----------------~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~F~vLL 212 (238)
T PF10269_consen 156 ADGLAFLVCLYSII----------------MSIRYLD------RNPGLLPSQR-RSSLQSRICWGGLFLVIPLLVFQVLL 212 (238)
T ss_pred HHHHHHHHHHHHHH----------------HHHHHHh------ccCCCchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986311100 0111111 2223333333 2233334444 89999999999999
Q ss_pred HHhhcCCCCcCCCCChhhhHHHHHHH
Q 012197 270 FMYLEGTPSRARNIPLRVIFAPLLLL 295 (468)
Q Consensus 270 ~~~L~~~~~~~~~~~~~~vf~Pl~il 295 (468)
|+||||++.+|.++|+..||+|++++
T Consensus 213 ~~kLe~~~~~~~~~~~~~vf~PL~i~ 238 (238)
T PF10269_consen 213 CMKLEGTPWSAANIPISVVFIPLFIL 238 (238)
T ss_pred HHHhcCCccccccccHHHHHHHHHhC
Confidence 99999997777899999999999974
No 2
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=261.61 Aligned_cols=187 Identities=23% Similarity=0.346 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccEehhhhhHHHHHHHHHHHHhhhhhccCCCCCCcchhhHHHhhcchhHHHHHHHHHH
Q 012197 84 VAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLL 163 (468)
Q Consensus 84 ~~~lll~~F~~llc~kLe~~~~~~~~~Vf~Pl~~l~~~~~v~~~~~c~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 163 (468)
.-++++++||+|.|+|||.+++. |.+||+|+|.+++++ +.+|+|++. +|+++|.|- .+++|++
T Consensus 6 ~~hl~llmfe~lvcdkle~~~hf-w~lvf~plff~s~vs----vgacvw~~R-hd~a~ele~--------~~avnil--- 68 (267)
T KOG3879|consen 6 GIHLLLLMFEVLVCDKLERDYHF-WLLVFMPLFFVSPVS----VGACVWGFR-HDLAFELEF--------TWAVNIL--- 68 (267)
T ss_pred HHHHHHHHHHHHHhhhhccCcee-hHHHHHHHHhcChhh----hhhhhhhhh-cchHHHHHH--------HHHHHHH---
Confidence 44899999999999999999988 999999999999988 589999999 999999994 3655555
Q ss_pred HHHhhhhhhccCceeeecceehhhHHHHHHHHHhhhhcccCCccccccccccCCCCCcceeeeeeeccceeecCCcchhh
Q 012197 164 AATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQ 243 (468)
Q Consensus 164 ~~~i~l~LKLDg~~~~~~W~~vFiPlwi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (468)
|+||++||||.. ++|||.+||+|+||++++.+++ ++|+++|+....|+++.+++|
T Consensus 69 -qlIflaLKLD~~-v~WnW~VVFvPlWI~~sil~V~-----------------------VLy~iv~s~~~lrs~~v~p~~ 123 (267)
T KOG3879|consen 69 -QLIFLALKLDKI-VHWNWFVVFVPLWIFDSILLVV-----------------------VLYKIVWSVLFLRSRDVIPEQ 123 (267)
T ss_pred -HHHHHHHhcCcc-cCCceEEEeehHHHHHHHHHHH-----------------------HHHHHHHHHHhccccccCHHH
Confidence 599999999995 9999999999999999999996 899999998888999999999
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCChhhhHHHHHHHHHhhhhhheeeecceeeeccC
Q 012197 244 NCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVH 316 (468)
Q Consensus 244 ~~~~~~~~~~~~~~l~i~ll~f~iLL~~~L~~~~~~~~~~~~~~vf~Pl~il~~~~~~f~~~~~~e~~~~~~~ 316 (468)
| |.+...++.+...++|+++||++||.||||.+ ..+|++++|+|+++....++.....+=--++++..|
T Consensus 124 r-r~~l~~ai~~i~~Vlp~Laf~VlLc~KLdg~~---t~~sy~~vfaPLwlsl~t~i~~s~~kggn~wwFGiR 192 (267)
T KOG3879|consen 124 R-RTHLTMAIWNITIVLPLLAFQVLLCHKLDGHN---TTFSYIVVFAPLWLSLLTAIATSGSKGGNHWWFGIR 192 (267)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccceEEEEHHHHHHHHHHHHHHhccCCCceEEEEec
Confidence 8 86777777777999999999999999999873 489999999999999888877665533333344333
No 3
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.61 E-value=2.9e-16 Score=141.60 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=73.4
Q ss_pred hhhheeeecceeeeccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhccccccccccCCCChhhh
Q 012197 300 VLFAVYRLLEKIYLLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIV 378 (468)
Q Consensus 300 ~~f~~~~~~e~~~~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~~~sg~~t~~~e~V 378 (468)
..|-.|++-+...+.+..||+|| ||+|.+|.++|| +|+++|.+ |+++||||+||+||+|.|. ++
T Consensus 20 ~TF~~Wp~~~~~~c~p~~lA~AGFy~~g~~D~~~Cf---~C~~~L~~-We~~DDPW~EH~k~~p~C~-----------F~ 84 (147)
T KOG1101|consen 20 KTFKNWPYSDMDKCTPEQLAEAGFYYTGKQDCVKCF---FCSGGLDD-WEPGDDPWEEHAKWSPECE-----------FL 84 (147)
T ss_pred hhhhcCCCCCCCCcCHHHHHhCCceeeCCCCceECc---ccCccccc-CCCCCCcHHHHHhhCCCCc-----------ee
Confidence 56788999998889999999999 999999999999 99999999 9999999999999999999 99
Q ss_pred ccCCCCchhhHHHHHH
Q 012197 379 KKMPKSGLIDEIWKLQ 394 (468)
Q Consensus 379 k~~K~~e~~~~~~~lq 394 (468)
+..|++++...+....
T Consensus 85 ~~~k~~e~~~~v~~~~ 100 (147)
T KOG1101|consen 85 KLKKGREFLGTVQSTA 100 (147)
T ss_pred ecccchhhhhHHHHhH
Confidence 9999999987665544
No 4
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=9.8e-15 Score=137.11 Aligned_cols=170 Identities=21% Similarity=0.233 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHhheeccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 012197 20 VLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIR 99 (468)
Q Consensus 20 ~~~~~~ll~F~ill~LklD~~i~wsW~~VF~PLwi~~~i~~~g~~~~~~~~~~~~~~w~~~~~~~~~lll~~F~~llc~k 99 (468)
...|+.|+.|.+|.|.|++..... |-.||+||+....+....++.+.. +++... ..+....-+.+-++||+|
T Consensus 5 ~~~hl~llmfe~lvcdkle~~~hf-w~lvf~plff~s~vsvgacvw~~R----hd~a~e---le~~~avnilqlIflaLK 76 (267)
T KOG3879|consen 5 VGIHLLLLMFEVLVCDKLERDYHF-WLLVFMPLFFVSPVSVGACVWGFR----HDLAFE---LEFTWAVNILQLIFLALK 76 (267)
T ss_pred HHHHHHHHHHHHHHhhhhccCcee-hHHHHHHHHhcChhhhhhhhhhhh----cchHHH---HHHHHHHHHHHHHHHHHh
Confidence 456899999999999999954433 999999999988877766665541 122110 123334445556669999
Q ss_pred hcCcccccEehhhhhHHHHHHHHHHHHhhhhhccCCCCCCcchhhHHHhhcchhHHHHH----HHHHHHHHhhhhhhccC
Q 012197 100 LEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAIS----MIFLLAATIFTLLKLCG 175 (468)
Q Consensus 100 Le~~~~~~~~~Vf~Pl~~l~~~~~v~~~~~c~~~~~~~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~i~l~LKLDg 175 (468)
||...+|+|-+||+|+|++..++++.++..-.+... ..||.+...- ++..|...++. ++-.+++.+++..||||
T Consensus 77 LD~~v~WnW~VVFvPlWI~~sil~V~VLy~iv~s~~-~lrs~~v~p~-~rr~~l~~ai~~i~~Vlp~Laf~VlLc~KLdg 154 (267)
T KOG3879|consen 77 LDKIVHWNWFVVFVPLWIFDSILLVVVLYKIVWSVL-FLRSRDVIPE-QRRTHLTMAIWNITIVLPLLAFQVLLCHKLDG 154 (267)
T ss_pred cCcccCCceEEEeehHHHHHHHHHHHHHHHHHHHHH-hccccccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887766654333222 2344332221 23344444332 22378899999999998
Q ss_pred ceeeecceehhhHHHHHHHHHhhh
Q 012197 176 DVATLGWWDLFINFGIAECFAFLV 199 (468)
Q Consensus 176 ~~~~~~W~~vFiPlwi~~~~~~l~ 199 (468)
...+.|+.++|+|+|+....++..
T Consensus 155 ~~t~~sy~~vfaPLwlsl~t~i~~ 178 (267)
T KOG3879|consen 155 HNTTFSYIVVFAPLWLSLLTAIAT 178 (267)
T ss_pred ccccceEEEEHHHHHHHHHHHHHH
Confidence 756999999999999987666664
No 5
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=99.49 E-value=1.9e-13 Score=133.69 Aligned_cols=170 Identities=24% Similarity=0.348 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHhhee-----cc-CCCCCCCCcccccch-hhH--HHHHHH
Q 012197 19 AVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGR-----FS-LPAPVMPHNHQWAPS-HAI--VAAPLL 89 (468)
Q Consensus 19 ~~~~~~~ll~F~ill~LklD~~i~wsW~~VF~PLwi~~~i~~~g~-----~~-~~~~~~~~~~~w~~~-~~~--~~~lll 89 (468)
....+.+++.|.+|+|.|+++.-+.+|..||+|+|+..++.+... ++ +..+...++..|.+. +.. +..+..
T Consensus 48 ~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiPL~~l~~~~I~~~i~~~r~~~~~~e~~~~~~~~~~~~~~~~~l~~if~ 127 (238)
T PF10269_consen 48 SVVAHLLLLAFELLLCIKLEGGSSISWSIVFIPLFVLSALSILICIWNFRHMPGDGEEMSDRSIWFELPFFWNILSLIFF 127 (238)
T ss_pred HHHHHHHHHHHHHHheeecCCCCcceeeeeeechhhHHHHHHHHHHHhhccCcccccCCCCchhhhhhhHHHHHHHHHHH
Confidence 455677889999999999988889999999999999888777422 21 111333344444322 111 334557
Q ss_pred HHHHHHHHHHhcCcccccEehhhhhHHHHHHHHHHHHhh----hhhccCCCCCCcchhhHHHhhcchh-H--HHHHHHHH
Q 012197 90 VAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIR----MCRALMPGDEESISDEAIWETLPHF-W--VAISMIFL 162 (468)
Q Consensus 90 ~~F~~llc~kLe~~~~~~~~~Vf~Pl~~l~~~~~v~~~~----~c~~~~~~~~~~~~~e~~~~~~~~~-~--~~~~~~~~ 162 (468)
++|.+++++|||+..+++|..||+|+|+......+..+. .++....+.+...+.+.- +..... + ..+.+. .
T Consensus 128 ~~f~v~l~Lkld~~i~~sW~~vFiPl~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~-~ 205 (238)
T PF10269_consen 128 LAFTVFLALKLDGVIDWSWWIVFIPLWIADGLAFLVCLYSIIMSIRYLDRNPGLLPSQRRS-SLQSRICWGGLFLVIP-L 205 (238)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHHHHHHHH-H
Confidence 799999999999999999999999999999866542222 221111101111111100 000000 1 111222 5
Q ss_pred HHHHhhhhhhccCcee----eecceehhhHHHH
Q 012197 163 LAATIFTLLKLCGDVA----TLGWWDLFINFGI 191 (468)
Q Consensus 163 ~~~~i~l~LKLDg~~~----~~~W~~vFiPlwi 191 (468)
+++.+++..||||+ . +.++..+|+|+|+
T Consensus 206 l~F~vLL~~kLe~~-~~~~~~~~~~~vf~PL~i 237 (238)
T PF10269_consen 206 LVFQVLLCMKLEGT-PWSAANIPISVVFIPLFI 237 (238)
T ss_pred HHHHHHHHHHhcCC-ccccccccHHHHHHHHHh
Confidence 78899999999996 7 8999999999997
No 6
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.7e-13 Score=133.09 Aligned_cols=75 Identities=33% Similarity=0.646 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhhhhccccHHHHHhhhhcccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccCeeee
Q 012197 390 IWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEERLPI 465 (468)
Q Consensus 390 ~~~lq~~~~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~iki 465 (468)
..++||++|.++...+.+.. + .+++.++|+||++..+|++++||+|.|+|.+||+.+ .+||+||++|+...+|
T Consensus 265 ~y~LqEiyGien~~v~~~~~--~-~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 265 RYLLQEIYGIENSTVEGTDA--D-ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred eeeeehhhccccCCCCCCcc--c-cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 35778888766544333333 2 445678999999999999999999999999999987 5699999999998888
Q ss_pred ec
Q 012197 466 YD 467 (468)
Q Consensus 466 y~ 467 (468)
+-
T Consensus 342 ~~ 343 (349)
T KOG4265|consen 342 YV 343 (349)
T ss_pred cc
Confidence 63
No 7
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=99.17 E-value=6.4e-12 Score=99.87 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=47.2
Q ss_pred eccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhcccccc
Q 012197 313 LLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETK 366 (468)
Q Consensus 313 ~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~~ 366 (468)
..+++||+|| ||+|.+|.++|+ +|+.++.+ |+++|+|++||++++|.|.+
T Consensus 18 ~~~~~LA~~Gfyy~~~~d~v~C~---~C~~~l~~-w~~~d~p~~~H~~~~p~C~f 68 (71)
T smart00238 18 LTPEQLAEAGFYYTGVGDEVKCF---FCGGELDN-WEPGDDPWEEHKKWSPNCPF 68 (71)
T ss_pred CCHHHHHHcCCeECCCCCEEEeC---CCCCCcCC-CCCCCCHHHHHhHhCcCCcC
Confidence 4577899999 999999999999 99999999 99999999999999999983
No 8
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=99.17 E-value=3.6e-12 Score=101.29 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=44.9
Q ss_pred eeccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhccccc
Q 012197 312 YLLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAET 365 (468)
Q Consensus 312 ~~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~ 365 (468)
....++||+|| ||+|.+|.++|+ +||..+.+ |+++|||++||.+++|.|.
T Consensus 17 ~~~~~~LA~aGFyy~~~~d~v~C~---~C~~~l~~-w~~~Ddp~~~H~~~sp~C~ 67 (70)
T PF00653_consen 17 PVSPEKLARAGFYYTGTGDRVRCF---YCGLELDN-WEPNDDPWEEHKRHSPNCP 67 (70)
T ss_dssp SSHHHHHHHTTEEEESSTTEEEET---TTTEEEES--STT--HHHHHHHHSTTBH
T ss_pred CCCHHHHHHCCCEEcCCCCEEEEe---ccCCEEeC-CCCCCCHHHHHHHHCcCCe
Confidence 56778999999 999999999999 99999999 9999999999999999998
No 9
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.8e-12 Score=121.59 Aligned_cols=51 Identities=35% Similarity=0.972 Sum_probs=49.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHcCCCCCCCcccccCeeeeecC
Q 012197 418 KILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV 468 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I~~~ikiy~~ 468 (468)
..+|+||||.+++.+|+||||.+.|.+|..+++.||+||+.|..+++||+|
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999986
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.12 E-value=1.7e-11 Score=90.89 Aligned_cols=45 Identities=49% Similarity=1.058 Sum_probs=39.8
Q ss_pred ccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccCe
Q 012197 418 KILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEER 462 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~ 462 (468)
+..|.||+++.+++++.||||.++|.+|+.+. ++||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999999999999997 8899999999864
No 11
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.1e-12 Score=93.65 Aligned_cols=49 Identities=35% Similarity=0.876 Sum_probs=45.8
Q ss_pred cccccccccccceEEecCCCcccChhhHHcC-----CCCCCCcccccCeeeeec
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKC-----KKCPICRVFIEERLPIYD 467 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~~ikiy~ 467 (468)
.+|.||+|++.|.|+.-|||.+.|.+|+.++ ..||+||++|++++|.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 5899999999999999999999999999986 359999999999999986
No 12
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=99.09 E-value=2.5e-11 Score=95.95 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred eeccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhcccccc
Q 012197 312 YLLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETK 366 (468)
Q Consensus 312 ~~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~~ 366 (468)
...+++||++| ||+|..|.++|+ +|+.++.+ |+++|+|++||++++|.|.+
T Consensus 15 ~~~~~~La~~Gfyy~~~~d~v~C~---~C~~~~~~-w~~~d~p~~~H~~~~p~C~f 66 (69)
T cd00022 15 KVTPEKLAEAGFYYTGRGDEVKCF---FCGLELKN-WEPGDDPWEEHKRWSPNCPF 66 (69)
T ss_pred cCCHHHHHHcCCeEcCCCCEEEeC---CCCCCccC-CCCCCCHHHHHhHhCcCCcC
Confidence 34567899999 999999999999 99999999 99999999999999999993
No 13
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.3e-09 Score=109.78 Aligned_cols=51 Identities=29% Similarity=0.753 Sum_probs=48.3
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcCCCCCCCcccccCeeeeec
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYD 467 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I~~~ikiy~ 467 (468)
....|+||.+++.+++++||||.+.|..|+..+.+||+||+.|...+|+|+
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 345899999999999999999999999999999999999999999999986
No 14
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.4e-08 Score=95.56 Aligned_cols=57 Identities=35% Similarity=0.765 Sum_probs=49.0
Q ss_pred HHHhhhhcccccccccccccceEEecCCCcccChhhHHcCCCCCCCcccccCeeeeec
Q 012197 410 EYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYD 467 (468)
Q Consensus 410 ~~~~~~~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I~~~ikiy~ 467 (468)
+.++..... .|+.|.+++.+++++||+|++.|..|..+++.||+|+.++.+.+.+|.
T Consensus 151 ~~~~~~~~~-~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 151 SVDNFKRMR-SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred hhhhhhccc-cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 333333333 399999999999999999999999999999999999999999999874
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.16 E-value=9.7e-07 Score=82.89 Aligned_cols=49 Identities=33% Similarity=0.813 Sum_probs=40.8
Q ss_pred cccccccccccccceEEecCCCcccChhhHHc--------------------CCCCCCCcccccC--eeeee
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEK--------------------CKKCPICRVFIEE--RLPIY 466 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~--------------------l~~CPiCR~~I~~--~ikiy 466 (468)
+...|.||++...+.+.++|||. +|..|..+ ..+||+||.++.. .+++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 34689999999999999999998 99999863 1469999999866 45555
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.9e-06 Score=79.64 Aligned_cols=52 Identities=25% Similarity=0.706 Sum_probs=44.0
Q ss_pred hhcccccccccccccceEEecCCCcccChhhHHc-------CCCCCCCccccc--Ceeeeec
Q 012197 415 QTEKILCRICFEEQINILLLPCRHHILCRTCGEK-------CKKCPICRVFIE--ERLPIYD 467 (468)
Q Consensus 415 ~~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~-------l~~CPiCR~~I~--~~ikiy~ 467 (468)
+.....|-||+|..++.|+.+|||+ +|..|.-+ .+.||+|+..|+ +++++|.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3456799999999999999999999 99999876 267999998665 4788885
No 17
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.89 E-value=4.3e-06 Score=58.57 Aligned_cols=34 Identities=44% Similarity=1.193 Sum_probs=28.6
Q ss_pred cccccccccce-EEecCCCcccChhhHHcC----CCCCCC
Q 012197 421 CRICFEEQINI-LLLPCRHHILCRTCGEKC----KKCPIC 455 (468)
Q Consensus 421 C~IC~~~~~~v-v~~PCgH~~~C~~Ca~~l----~~CPiC 455 (468)
|.||++..++. ++.||||. +|.+|..+. .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999998 78999999 999998874 679987
No 18
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.89 E-value=2.9e-06 Score=86.23 Aligned_cols=52 Identities=33% Similarity=0.803 Sum_probs=44.5
Q ss_pred hhhhcccccccccccccceEEecCCCcccChhhHHc------CCCCCCCcccccCeeee
Q 012197 413 RLQTEKILCRICFEEQINILLLPCRHHILCRTCGEK------CKKCPICRVFIEERLPI 465 (468)
Q Consensus 413 ~~~~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~------l~~CPiCR~~I~~~iki 465 (468)
+..+.-..|+||-+++.|+-+.||||+ .|..|... -+.||.||-.|++..+|
T Consensus 364 eMgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 364 EMGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 344556799999999999999999999 99999765 26899999999997655
No 19
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.7e-06 Score=82.04 Aligned_cols=46 Identities=28% Similarity=0.692 Sum_probs=39.8
Q ss_pred cccccccccccccceEEecCCCcccChhhHHc----CCCCCCCcccccCee
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEK----CKKCPICRVFIEERL 463 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I~~~i 463 (468)
....|.+|+++..+...+||||. +|..|..+ -.+||.||.+.+-..
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 44799999999999999999999 99999876 367999999876543
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.84 E-value=9.2e-06 Score=58.52 Aligned_cols=37 Identities=49% Similarity=1.026 Sum_probs=32.0
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHcCC----CCCCCcc
Q 012197 420 LCRICFEEQ---INILLLPCRHHILCRTCGEKCK----KCPICRV 457 (468)
Q Consensus 420 ~C~IC~~~~---~~vv~~PCgH~~~C~~Ca~~l~----~CPiCR~ 457 (468)
.|.+|+++. +...+++|||. +|.+|..+.. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 378888875 56888999999 9999999986 8999985
No 21
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.78 E-value=1.2e-05 Score=78.38 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=38.4
Q ss_pred cccccccccccccc--------eEEecCCCcccChhhHHc----CCCCCCCcccccCeeee
Q 012197 417 EKILCRICFEEQIN--------ILLLPCRHHILCRTCGEK----CKKCPICRVFIEERLPI 465 (468)
Q Consensus 417 ~~~~C~IC~~~~~~--------vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I~~~iki 465 (468)
+...|.||++.-.+ .++.||||. +|.+|..+ ...||+||+++..+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 45689999997332 466799998 99999865 36899999999988764
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=9.5e-06 Score=74.68 Aligned_cols=49 Identities=31% Similarity=0.691 Sum_probs=38.7
Q ss_pred cccccccccccccce--EEecCCCcccChhhHHcC----CCCCCCcccccC--eeeee
Q 012197 417 EKILCRICFEEQINI--LLLPCRHHILCRTCGEKC----KKCPICRVFIEE--RLPIY 466 (468)
Q Consensus 417 ~~~~C~IC~~~~~~v--v~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~--~ikiy 466 (468)
....|+||++....- +-..|||+ +|.+|+... .+||+||++|+. +.+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 446899999985554 44799999 999999874 689999988876 34555
No 23
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.59 E-value=2.3e-05 Score=56.24 Aligned_cols=36 Identities=42% Similarity=1.031 Sum_probs=30.0
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHcC----CCCCCCc
Q 012197 420 LCRICFEEQ---INILLLPCRHHILCRTCGEKC----KKCPICR 456 (468)
Q Consensus 420 ~C~IC~~~~---~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR 456 (468)
.|.||++.- ..++.+||||. +|.+|..+. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999874 57888899998 999998873 7899998
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.43 E-value=9.6e-05 Score=50.01 Aligned_cols=34 Identities=50% Similarity=1.239 Sum_probs=30.2
Q ss_pred cccccccccceEEecCCCcccChhhHHc-----CCCCCCC
Q 012197 421 CRICFEEQINILLLPCRHHILCRTCGEK-----CKKCPIC 455 (468)
Q Consensus 421 C~IC~~~~~~vv~~PCgH~~~C~~Ca~~-----l~~CPiC 455 (468)
|.||++...+.+.+||||. +|.+|... ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999974 3569987
No 25
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.36 E-value=0.00015 Score=50.85 Aligned_cols=39 Identities=49% Similarity=1.115 Sum_probs=30.6
Q ss_pred cccccccccc-ceEEecCCCcccChhhHHc-----CCCCCCCcccc
Q 012197 420 LCRICFEEQI-NILLLPCRHHILCRTCGEK-----CKKCPICRVFI 459 (468)
Q Consensus 420 ~C~IC~~~~~-~vv~~PCgH~~~C~~Ca~~-----l~~CPiCR~~I 459 (468)
.|.||++... .+.+.||||. +|.+|... ..+||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4899999874 4455569999 99999974 35799999864
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.33 E-value=0.00011 Score=52.51 Aligned_cols=34 Identities=41% Similarity=1.046 Sum_probs=26.9
Q ss_pred cccccccccceEEecCCCcccChhhHHcC--------CCCCCC
Q 012197 421 CRICFEEQINILLLPCRHHILCRTCGEKC--------KKCPIC 455 (468)
Q Consensus 421 C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l--------~~CPiC 455 (468)
|.||++--.+.+.++|||. +|..|..+. -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999998874 248887
No 27
>PHA02926 zinc finger-like protein; Provisional
Probab=97.32 E-value=7.9e-05 Score=71.12 Aligned_cols=46 Identities=35% Similarity=0.688 Sum_probs=35.9
Q ss_pred cccccccccccc---------cceEEecCCCcccChhhHHcC----------CCCCCCcccccCee
Q 012197 417 EKILCRICFEEQ---------INILLLPCRHHILCRTCGEKC----------KKCPICRVFIEERL 463 (468)
Q Consensus 417 ~~~~C~IC~~~~---------~~vv~~PCgH~~~C~~Ca~~l----------~~CPiCR~~I~~~i 463 (468)
++..|.||+|.. +-.++.||+|. +|..|..+- +.||+||+....+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 456999999862 23577899999 999998752 23999999887654
No 28
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.31 E-value=9.2e-05 Score=52.10 Aligned_cols=34 Identities=50% Similarity=1.194 Sum_probs=30.0
Q ss_pred cccccccccceE-EecCCCcccChhhHHcC------CCCCCC
Q 012197 421 CRICFEEQINIL-LLPCRHHILCRTCGEKC------KKCPIC 455 (468)
Q Consensus 421 C~IC~~~~~~vv-~~PCgH~~~C~~Ca~~l------~~CPiC 455 (468)
|.||++...+.+ +.||||. +|.+|..+. .+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999988888 9999999 999998874 569987
No 29
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=8.7e-05 Score=74.73 Aligned_cols=46 Identities=35% Similarity=0.914 Sum_probs=40.9
Q ss_pred hcccccccccccccceEEecCCCcccChhhHHc----CCCCCCCcccccCe
Q 012197 416 TEKILCRICFEEQINILLLPCRHHILCRTCGEK----CKKCPICRVFIEER 462 (468)
Q Consensus 416 ~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I~~~ 462 (468)
.|+..|+||+..+++.+|.||+|. .|..|..+ .+.|=.|++.+.+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 466799999999999999999999 99999987 38899999987753
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00014 Score=76.74 Aligned_cols=48 Identities=33% Similarity=0.746 Sum_probs=40.8
Q ss_pred ccccccccccccceEEecCCCcccChhhHHcC---------CCCCCCcccccC--eeeee
Q 012197 418 KILCRICFEEQINILLLPCRHHILCRTCGEKC---------KKCPICRVFIEE--RLPIY 466 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l---------~~CPiCR~~I~~--~ikiy 466 (468)
...|+||++.+...+.+-|||. +|-.|.-.. .+||+||..|.- ...|+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 5689999999999999999999 999997752 679999999876 44443
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00019 Score=79.16 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=41.8
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC-----CCCCCCcccccC--eeeee
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC-----KKCPICRVFIEE--RLPIY 466 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~--~ikiy 466 (468)
+...|++|.+|..++++.-|||+ +|.+|..+. .+||.|..++.. +.+||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 45689999999999999999999 999998873 899999997754 45554
No 32
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00021 Score=69.74 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=37.2
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC------CCCCCCccccc
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC------KKCPICRVFIE 460 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l------~~CPiCR~~I~ 460 (468)
.+..|.+|++..-+..-.||||+ +|..|.... ..||.||+...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 35689999999999999999999 999998772 56999998654
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.00026 Score=73.98 Aligned_cols=44 Identities=34% Similarity=0.806 Sum_probs=38.2
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccC
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~ 461 (468)
+...|.||.+.-.+.++.||||. +|..|.... ..||.||.++..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 44699999999999999999999 999999853 579999998764
No 34
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.97 E-value=0.00029 Score=70.88 Aligned_cols=51 Identities=29% Similarity=0.754 Sum_probs=42.7
Q ss_pred HhhhhcccccccccccccceEEecCCCcccChhhHHcC------CCCCCCcccccCee
Q 012197 412 ERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKC------KKCPICRVFIEERL 463 (468)
Q Consensus 412 ~~~~~~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l------~~CPiCR~~I~~~i 463 (468)
++.++++..|.||-+.-.-+..+||+|. .|--|+.++ +.||+||..-+.++
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3344567799999999988899999999 999999985 78999998766654
No 35
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.94 E-value=0.00056 Score=52.44 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=36.7
Q ss_pred cccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccC
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEE 461 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~ 461 (468)
..|.||.+.-.+.+..||||. +|.+|..+. .+||+|+++++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999999999999999998 999998864 579999998843
No 36
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.60 E-value=0.00078 Score=48.41 Aligned_cols=27 Identities=41% Similarity=0.953 Sum_probs=17.5
Q ss_pred cccccccccc----eEEecCCCcccChhhHHcC
Q 012197 421 CRICFEEQIN----ILLLPCRHHILCRTCGEKC 449 (468)
Q Consensus 421 C~IC~~~~~~----vv~~PCgH~~~C~~Ca~~l 449 (468)
|.||.+ ..+ .+.+||||. +|.+|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788988 556 788899999 999999876
No 37
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.56 E-value=0.00093 Score=50.14 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=37.8
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC--CCCCCCcccccC
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC--KKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l--~~CPiCR~~I~~ 461 (468)
....|..|-.....-++.||||. .|.+|-..- ..||.|.++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 44589999999888888999999 899998765 789999998864
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.55 E-value=0.0009 Score=66.02 Aligned_cols=43 Identities=30% Similarity=0.561 Sum_probs=37.6
Q ss_pred ccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccC
Q 012197 418 KILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEE 461 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~ 461 (468)
...|.||.++-+-.+..||||. +|.-|...- ..||+||.+...
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 4589999999999999999999 999999873 679999986543
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.48 E-value=0.00077 Score=67.78 Aligned_cols=44 Identities=36% Similarity=0.844 Sum_probs=39.3
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccC
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~ 461 (468)
+...|-||++.-.-.+++||+|. +|.-|.... ..||.|+.++++
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 44689999999999999999999 999999884 679999988765
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0013 Score=64.19 Aligned_cols=40 Identities=43% Similarity=1.056 Sum_probs=35.5
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC----CCCCCCcc
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRV 457 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~ 457 (468)
+...|.||++.-....++||||. +|..|.... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 55699999999888899999999 999999985 47999994
No 41
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0037 Score=63.72 Aligned_cols=49 Identities=35% Similarity=0.712 Sum_probs=36.7
Q ss_pred HHHhhhhcccccccccccc-------------cceEEecCCCcccChhhHHc----CCCCCCCcccc
Q 012197 410 EYERLQTEKILCRICFEEQ-------------INILLLPCRHHILCRTCGEK----CKKCPICRVFI 459 (468)
Q Consensus 410 ~~~~~~~~~~~C~IC~~~~-------------~~vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I 459 (468)
..|++.+++..|.||+|+- ...-=+||||. +=.+|.+. .+.||+||.++
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 3456677788999999971 11234699998 77888765 58999999984
No 42
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0063 Score=60.60 Aligned_cols=43 Identities=35% Similarity=0.857 Sum_probs=34.8
Q ss_pred cccccccccccc---cceEEecCCCcccChhhHHc-----CCCCCCCccccc
Q 012197 417 EKILCRICFEEQ---INILLLPCRHHILCRTCGEK-----CKKCPICRVFIE 460 (468)
Q Consensus 417 ~~~~C~IC~~~~---~~vv~~PCgH~~~C~~Ca~~-----l~~CPiCR~~I~ 460 (468)
...+|.||+++- ...+.+||.|. +=..|..+ -.+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 346899999863 23777899999 78999887 268999999875
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.89 E-value=0.0034 Score=48.73 Aligned_cols=42 Identities=33% Similarity=0.882 Sum_probs=23.7
Q ss_pred cccccccccccccceE-EecCCCcccChhhHHcC--CCCCCCcccc
Q 012197 417 EKILCRICFEEQINIL-LLPCRHHILCRTCGEKC--KKCPICRVFI 459 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv-~~PCgH~~~C~~Ca~~l--~~CPiCR~~I 459 (468)
+...|.+|.+--+..| +.-|.|. +|..|.... .+||+|+.|-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 3468999999977764 6899999 999999886 7899999875
No 44
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.16 E-value=0.013 Score=46.79 Aligned_cols=36 Identities=36% Similarity=0.790 Sum_probs=27.3
Q ss_pred ccccccccc-------------cceEEecCCCcccChhhHHc----CCCCCCCc
Q 012197 420 LCRICFEEQ-------------INILLLPCRHHILCRTCGEK----CKKCPICR 456 (468)
Q Consensus 420 ~C~IC~~~~-------------~~vv~~PCgH~~~C~~Ca~~----l~~CPiCR 456 (468)
.|.||++.- ..++..+|||. +-..|..+ -+.||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 588988754 34566799999 99999886 26899998
No 45
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.013 Score=64.21 Aligned_cols=44 Identities=34% Similarity=0.714 Sum_probs=36.9
Q ss_pred hcccccccccccccc-----eEEecCCCcccChhhHHc----CCCCCCCccccc
Q 012197 416 TEKILCRICFEEQIN-----ILLLPCRHHILCRTCGEK----CKKCPICRVFIE 460 (468)
Q Consensus 416 ~~~~~C~IC~~~~~~-----vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I~ 460 (468)
.....|.||.|.-.. ...+||||. ++..|..+ .+.||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 345689999998777 788899999 99999887 488999998443
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.018 Score=60.48 Aligned_cols=44 Identities=27% Similarity=0.752 Sum_probs=37.3
Q ss_pred cccccccccccccceEEecCCCcccChhhHHc----CCCCCCCcccccC
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEK----CKKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~----l~~CPiCR~~I~~ 461 (468)
.+..|.||++..-..+..||||. +|..|..+ -..||.||.++.+
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 45689999999888888899999 99999554 3789999998775
No 47
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.047 Score=56.11 Aligned_cols=43 Identities=30% Similarity=0.755 Sum_probs=32.5
Q ss_pred ccccccccccc---ceEEecCCCcccChhhHHc----C-CCCCCCcccccCe
Q 012197 419 ILCRICFEEQI---NILLLPCRHHILCRTCGEK----C-KKCPICRVFIEER 462 (468)
Q Consensus 419 ~~C~IC~~~~~---~vv~~PCgH~~~C~~Ca~~----l-~~CPiCR~~I~~~ 462 (468)
..|.||+|.-. .+..+||+|. +=..|.+. - +.||+|++.|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 48999999633 4677899998 55678775 1 3499999987654
No 48
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.16 E-value=0.044 Score=55.51 Aligned_cols=43 Identities=33% Similarity=0.855 Sum_probs=36.1
Q ss_pred cccccccccccccceEEecC--CCcccChhhHHc-CCCCCCCcccccC
Q 012197 417 EKILCRICFEEQINILLLPC--RHHILCRTCGEK-CKKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PC--gH~~~C~~Ca~~-l~~CPiCR~~I~~ 461 (468)
+-..|+||++.-.-.++ .| ||. +|..|..+ .++||.||.++..
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 45689999999887777 55 799 99999955 4899999999984
No 49
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.03 E-value=0.06 Score=42.94 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=33.8
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC-----CCCCCCcccccCe
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC-----KKCPICRVFIEER 462 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~~ 462 (468)
+...|.|+.+--++.|..|+||. ++..|..+- ..||.||++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 34689999999999999999987 999998762 5699999988763
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.92 E-value=0.029 Score=52.82 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=38.6
Q ss_pred cccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccCeee
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEERLP 464 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~ik 464 (468)
..|.||.+.-+..|...|||. +|..|+.+- .+|-+|.+...+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW 245 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence 489999999999999999999 999999874 679999987666543
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.053 Score=55.87 Aligned_cols=46 Identities=33% Similarity=0.639 Sum_probs=36.8
Q ss_pred cccccccccccccceE-----E---ecCCCcccChhhHHc-----------CCCCCCCcccccCee
Q 012197 417 EKILCRICFEEQINIL-----L---LPCRHHILCRTCGEK-----------CKKCPICRVFIEERL 463 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv-----~---~PCgH~~~C~~Ca~~-----------l~~CPiCR~~I~~~i 463 (468)
.++.|-||++.--... + -+|.|. +|..|... .+.||.||.+...+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4568999999866665 4 679999 99999875 267999999877654
No 52
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.039 Score=58.29 Aligned_cols=44 Identities=34% Similarity=0.748 Sum_probs=33.8
Q ss_pred ccccccccccc-----------------ccceEEecCCCcccChhhHHc-C---C-CCCCCcccccC
Q 012197 417 EKILCRICFEE-----------------QINILLLPCRHHILCRTCGEK-C---K-KCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~-----------------~~~vv~~PCgH~~~C~~Ca~~-l---~-~CPiCR~~I~~ 461 (468)
+...|+||++. .++.++.||.|. +=..|..+ + + .||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44579999872 345778899998 77999876 2 3 79999998753
No 53
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.055 Score=53.95 Aligned_cols=43 Identities=26% Similarity=0.578 Sum_probs=38.6
Q ss_pred ccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccCee
Q 012197 420 LCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEERL 463 (468)
Q Consensus 420 ~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~i 463 (468)
.|.||...-.+.|...|||. +|..|+.+- .+|++|.+.+.+..
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 59999999999999999999 999999984 67999999988754
No 54
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.087 Score=54.77 Aligned_cols=36 Identities=39% Similarity=0.917 Sum_probs=29.4
Q ss_pred Hhhhhccccccccccccc---ceEEecCCCcccChhhHHc
Q 012197 412 ERLQTEKILCRICFEEQI---NILLLPCRHHILCRTCGEK 448 (468)
Q Consensus 412 ~~~~~~~~~C~IC~~~~~---~vv~~PCgH~~~C~~Ca~~ 448 (468)
+.-......|.||++.+. +..++||+|+ +|..|...
T Consensus 178 ~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd 216 (445)
T KOG1814|consen 178 EKFVNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD 216 (445)
T ss_pred HHHHhhcccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence 334456679999999865 5889999998 99999886
No 55
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.031 Score=56.91 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=36.5
Q ss_pred cccccccccccccc-eEEecCCCcccChhhHHcC-----CCCCCCcccccCee
Q 012197 417 EKILCRICFEEQIN-ILLLPCRHHILCRTCGEKC-----KKCPICRVFIEERL 463 (468)
Q Consensus 417 ~~~~C~IC~~~~~~-vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~~i 463 (468)
....|.||++--.. +...-|+|. +|.+|..+- +.||-||+...+..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 34689999998554 455689999 999998873 78999999876643
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.17 Score=50.02 Aligned_cols=44 Identities=27% Similarity=0.580 Sum_probs=35.8
Q ss_pred hcccccccccccccce-EEecCCCcccChhhHHcC------CCCCCCccccc
Q 012197 416 TEKILCRICFEEQINI-LLLPCRHHILCRTCGEKC------KKCPICRVFIE 460 (468)
Q Consensus 416 ~~~~~C~IC~~~~~~v-v~~PCgH~~~C~~Ca~~l------~~CPiCR~~I~ 460 (468)
..+.+|++|-+.+... +..||||. +|..|..+- -.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 4567999999998875 44579998 999999874 27999998776
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=0.085 Score=52.90 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=31.0
Q ss_pred ccccccccccc--eEEecCCCcccChhhHHcC--CCCCCCcccccCeee
Q 012197 420 LCRICFEEQIN--ILLLPCRHHILCRTCGEKC--KKCPICRVFIEERLP 464 (468)
Q Consensus 420 ~C~IC~~~~~~--vv~~PCgH~~~C~~Ca~~l--~~CPiCR~~I~~~ik 464 (468)
-|.-|-- .+. -..+||.|+ +|.+||..- |.||.|-.+|..+.+
T Consensus 92 fCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 92 FCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred eecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHHHHHH
Confidence 4555533 222 245699998 999999985 689999988776543
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=0.35 Score=47.19 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=37.7
Q ss_pred cccccccccccccc----eEEecCCCcccChhhHHcC----CCCCCCcccccCe
Q 012197 417 EKILCRICFEEQIN----ILLLPCRHHILCRTCGEKC----KKCPICRVFIEER 462 (468)
Q Consensus 417 ~~~~C~IC~~~~~~----vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~ 462 (468)
....|++|.+.-.| +++.||||+ +|.+|..++ ..||+|-.+.++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 56799999987554 688999999 899999996 4699999887764
No 59
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.59 E-value=0.17 Score=56.77 Aligned_cols=41 Identities=32% Similarity=0.879 Sum_probs=35.8
Q ss_pred cccccccccccceEEecCCCcccChhhHHcC------CCCCCCcccccC
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKC------KKCPICRVFIEE 461 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l------~~CPiCR~~I~~ 461 (468)
..|.+|.+ ..+.++.+|||. .|.+|-... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 888999999999 999998874 569999987654
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=85.20 E-value=0.37 Score=50.79 Aligned_cols=46 Identities=30% Similarity=0.761 Sum_probs=38.8
Q ss_pred cccccccccccccceEE-ecCCCcccChhhHHcC----CCCCCCcccccCee
Q 012197 417 EKILCRICFEEQINILL-LPCRHHILCRTCGEKC----KKCPICRVFIEERL 463 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~-~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~i 463 (468)
++..|.+|..-..+.+- ..|||. +|..|..+. .+||.||+......
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhh
Confidence 55689999999999888 499999 999998874 68999998776543
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=84.77 E-value=0.64 Score=46.23 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=36.3
Q ss_pred hcccccccccccc----cceEEecCCCcccChhhHHcCC---CCCCCcccccC
Q 012197 416 TEKILCRICFEEQ----INILLLPCRHHILCRTCGEKCK---KCPICRVFIEE 461 (468)
Q Consensus 416 ~~~~~C~IC~~~~----~~vv~~PCgH~~~C~~Ca~~l~---~CPiCR~~I~~ 461 (468)
.....|+|....- +-+.+.||||+ +++.+...++ .||+|-++.+.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence 3456899997653 45677799998 8999999986 79999998765
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.03 E-value=0.57 Score=49.38 Aligned_cols=40 Identities=35% Similarity=0.820 Sum_probs=29.2
Q ss_pred ccccccccccc-ccc---eEEecCCCcccChhhHHcC--CCCCCCcc
Q 012197 417 EKILCRICFEE-QIN---ILLLPCRHHILCRTCGEKC--KKCPICRV 457 (468)
Q Consensus 417 ~~~~C~IC~~~-~~~---vv~~PCgH~~~C~~Ca~~l--~~CPiCR~ 457 (468)
|...|+||++| +.+ ++-++|.|. +=-.|..+- ..||+||-
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccc-cchHHHhhcccCcChhhhh
Confidence 55799999998 333 367899999 444566553 67999995
No 63
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.92 E-value=0.81 Score=33.46 Aligned_cols=43 Identities=26% Similarity=0.756 Sum_probs=25.3
Q ss_pred ccccccccccceEEecCCCcccChhhHHcC----CCCCCCcccccCeee
Q 012197 420 LCRICFEEQINILLLPCRHHILCRTCGEKC----KKCPICRVFIEERLP 464 (468)
Q Consensus 420 ~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~ik 464 (468)
.|+-|.-..++.+ .|.-...|..|...+ ..||+|..+....+|
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 5888988888876 688555999999987 679999999877654
No 64
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=79.51 E-value=1.6 Score=44.17 Aligned_cols=49 Identities=6% Similarity=-0.025 Sum_probs=42.3
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC--CCCCCCcccccCeeee
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC--KKCPICRVFIEERLPI 465 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l--~~CPiCR~~I~~~iki 465 (468)
....|..|-.+....++.||||..+|.+||..- ..||.|.......++|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 346899999999999999999999999999853 6799999877766665
No 65
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.86 E-value=0.61 Score=45.38 Aligned_cols=39 Identities=28% Similarity=0.853 Sum_probs=29.5
Q ss_pred cccccccccc---ccceEE--ec-CCCcccChhhHHcC-----CCCC--CCcc
Q 012197 418 KILCRICFEE---QINILL--LP-CRHHILCRTCGEKC-----KKCP--ICRV 457 (468)
Q Consensus 418 ~~~C~IC~~~---~~~vv~--~P-CgH~~~C~~Ca~~l-----~~CP--iCR~ 457 (468)
+..|++|... ..++.+ -| |-|. .|+.|..++ ..|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 3479999874 344444 47 9999 899999986 5699 7764
No 66
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.11 E-value=0.56 Score=52.47 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=33.1
Q ss_pred ccccccccccccceE---EecCCCcccChhhHHcC----CCCCCCcccccCee
Q 012197 418 KILCRICFEEQINIL---LLPCRHHILCRTCGEKC----KKCPICRVFIEERL 463 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv---~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~i 463 (468)
...|.+|...-.+-. =.+|+|. +|..|..+. +.||+||.....++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheee
Confidence 446888876544422 2499998 999998874 78999998776543
No 67
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.27 E-value=1 Score=45.89 Aligned_cols=44 Identities=30% Similarity=0.803 Sum_probs=32.0
Q ss_pred ccccccccccc----ccceEEecCCCcccChhhHHcC-----CCCCCCcccccC
Q 012197 417 EKILCRICFEE----QINILLLPCRHHILCRTCGEKC-----KKCPICRVFIEE 461 (468)
Q Consensus 417 ~~~~C~IC~~~----~~~vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~ 461 (468)
|+..|+.|++. +.+.---|||-. .|.-|...+ .+||-||...++
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 44469999986 333333467777 799998876 579999987654
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=73.79 E-value=1.5 Score=32.33 Aligned_cols=38 Identities=32% Similarity=0.772 Sum_probs=16.5
Q ss_pred ccccccc--ccceEEe--cCCCcccChhhHHcC-----CCCCCCcccc
Q 012197 421 CRICFEE--QINILLL--PCRHHILCRTCGEKC-----KKCPICRVFI 459 (468)
Q Consensus 421 C~IC~~~--~~~vv~~--PCgH~~~C~~Ca~~l-----~~CPiCR~~I 459 (468)
|++|.+. .++.-+. |||+. .|..|...+ ..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 4455544 2333334 56787 899997765 4699999874
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=73.46 E-value=0.89 Score=48.85 Aligned_cols=42 Identities=24% Similarity=0.812 Sum_probs=35.6
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC---------CCCCCCcccc
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC---------KKCPICRVFI 459 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l---------~~CPiCR~~I 459 (468)
+...|.+|.|...+.+-..|.|. +|.-|...- -+||.|-...
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45699999999999999999998 999998541 5799998643
No 70
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=73.38 E-value=2.7 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.610 Sum_probs=22.8
Q ss_pred eEEecCCCcccChhhHHc-------CCCCCCCccccc
Q 012197 431 ILLLPCRHHILCRTCGEK-------CKKCPICRVFIE 460 (468)
Q Consensus 431 vv~~PCgH~~~C~~Ca~~-------l~~CPiCR~~I~ 460 (468)
+++-.|+|. +=..|..+ -+.||+||++.+
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 466689998 88999765 267999999764
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=71.31 E-value=4.5 Score=33.82 Aligned_cols=30 Identities=23% Similarity=0.569 Sum_probs=22.6
Q ss_pred ccccccccccccc--ceEEecCCCcccChhhHH
Q 012197 417 EKILCRICFEEQI--NILLLPCRHHILCRTCGE 447 (468)
Q Consensus 417 ~~~~C~IC~~~~~--~vv~~PCgH~~~C~~Ca~ 447 (468)
+...|.+|..+-. ..+..||||. +-..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 4568999998744 4566699998 6777764
No 72
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=70.93 E-value=1.5 Score=44.40 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.6
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcC-----CCCCCCcccccCeeee
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKC-----KKCPICRVFIEERLPI 465 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l-----~~CPiCR~~I~~~iki 465 (468)
....|.+|+++..-+...||+|-++|.+|+... ..||+|........++
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 445899999999999999999999999997764 3499998766554444
No 73
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.01 E-value=2.6 Score=47.89 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=34.8
Q ss_pred ccccccccc-ccceEEecCCCcccChhhHHc-CCCCCCCcccccCeee
Q 012197 419 ILCRICFEE-QINILLLPCRHHILCRTCGEK-CKKCPICRVFIEERLP 464 (468)
Q Consensus 419 ~~C~IC~~~-~~~vv~~PCgH~~~C~~Ca~~-l~~CPiCR~~I~~~ik 464 (468)
..|..|-.. +.-+|..-|||. +=..|... ..+||-|+..-.++++
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLEDKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhccCcccCCccchhhhhhHH
Confidence 389999766 667788899998 55788774 5889999996666544
No 74
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=68.60 E-value=3.9 Score=30.06 Aligned_cols=36 Identities=39% Similarity=1.016 Sum_probs=24.7
Q ss_pred ccccccc--cccceEEecCC-----CcccChhhHHc------CCCCCCCc
Q 012197 420 LCRICFE--EQINILLLPCR-----HHILCRTCGEK------CKKCPICR 456 (468)
Q Consensus 420 ~C~IC~~--~~~~vv~~PCg-----H~~~C~~Ca~~------l~~CPiCR 456 (468)
.|.||++ .+.+....||. |.+ =.+|..+ ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3899997 56677888995 332 2567654 24799995
No 75
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.52 E-value=2.1 Score=38.17 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=38.2
Q ss_pred cccccccccccccceEEe----cCCCcccChhhHHcC-------CCCCCCcccccCeee
Q 012197 417 EKILCRICFEEQINILLL----PCRHHILCRTCGEKC-------KKCPICRVFIEERLP 464 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~----PCgH~~~C~~Ca~~l-------~~CPiCR~~I~~~ik 464 (468)
.-.+|-||.|...+-.|+ =||-. .|..|...+ ..||+|+++.++.-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 446899999999988886 37755 899998875 679999999887543
No 76
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=63.47 E-value=1.9 Score=43.96 Aligned_cols=48 Identities=33% Similarity=0.784 Sum_probs=39.0
Q ss_pred cccccccccccccceEE-ecCCCcccChhhHHc----CCCCCCCcccccCeeee
Q 012197 417 EKILCRICFEEQINILL-LPCRHHILCRTCGEK----CKKCPICRVFIEERLPI 465 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~-~PCgH~~~C~~Ca~~----l~~CPiCR~~I~~~iki 465 (468)
....|.+|..--+|+.. .-|-|- +|..|..+ .+.||.|...|.+....
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcccc
Confidence 44689999998887544 489999 99999887 37899999998887543
No 77
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.43 E-value=3.7 Score=40.81 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.4
Q ss_pred ceEEecCCCcccChhhHHc------CCCCCCCcccccC
Q 012197 430 NILLLPCRHHILCRTCGEK------CKKCPICRVFIEE 461 (468)
Q Consensus 430 ~vv~~PCgH~~~C~~Ca~~------l~~CPiCR~~I~~ 461 (468)
++--+.|+|+ +=+.|... .+.||.|+..++.
T Consensus 246 nty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 246 NTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred hheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 3445699998 77889875 4789999998875
No 78
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.39 E-value=2.9 Score=43.74 Aligned_cols=48 Identities=17% Similarity=0.439 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEecCCCcccChhhHH-----cC--------CCCCCCcccccC---e
Q 012197 418 KILCRICFE-------------------EQINILLLPCRHHILCRTCGE-----KC--------KKCPICRVFIEE---R 462 (468)
Q Consensus 418 ~~~C~IC~~-------------------~~~~vv~~PCgH~~~C~~Ca~-----~l--------~~CPiCR~~I~~---~ 462 (468)
...|++|.. ...+.+|-||||++. +..+. .+ ..||.|-.++++ .
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~S-ekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCS-EKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccc-hhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 568999975 235578899999832 22221 11 469999999876 4
Q ss_pred eeee
Q 012197 463 LPIY 466 (468)
Q Consensus 463 ikiy 466 (468)
+|.+
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5543
No 79
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=3.7 Score=41.05 Aligned_cols=31 Identities=23% Similarity=0.756 Sum_probs=27.4
Q ss_pred cccccccccccccceEEecCC----CcccChhhHHc
Q 012197 417 EKILCRICFEEQINILLLPCR----HHILCRTCGEK 448 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCg----H~~~C~~Ca~~ 448 (468)
....|.+|.++-.|+-|+.|- |. +|..|+.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccc-eecccCHH
Confidence 457899999999999999996 66 99999886
No 80
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.37 E-value=10 Score=43.93 Aligned_cols=43 Identities=28% Similarity=0.589 Sum_probs=25.1
Q ss_pred cccccccccccc--ceEE-----ecCCCcccChhhHHc------CCCCCCCcccccC
Q 012197 418 KILCRICFEEQI--NILL-----LPCRHHILCRTCGEK------CKKCPICRVFIEE 461 (468)
Q Consensus 418 ~~~C~IC~~~~~--~vv~-----~PCgH~~~C~~Ca~~------l~~CPiCR~~I~~ 461 (468)
..+|.|||.--. +-.+ --|.|. +=..|.-+ -.+||.||..|+-
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 458999997321 1111 125544 33455433 2689999988863
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.30 E-value=7.4 Score=40.55 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.0
Q ss_pred hcccccccccccccceEEe
Q 012197 416 TEKILCRICFEEQINILLL 434 (468)
Q Consensus 416 ~~~~~C~IC~~~~~~vv~~ 434 (468)
+|...|.=|+..+.++.+.
T Consensus 269 ~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred cccCCccccccCCCCcEEE
Confidence 3566899999999999886
No 82
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=54.00 E-value=3.6 Score=32.55 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=7.7
Q ss_pred CCCCCCcccccC
Q 012197 450 KKCPICRVFIEE 461 (468)
Q Consensus 450 ~~CPiCR~~I~~ 461 (468)
.+||.|+++|+-
T Consensus 56 G~CP~C~~~i~~ 67 (70)
T PF11793_consen 56 GECPYCSSPISW 67 (70)
T ss_dssp EE-TTT-SEEEG
T ss_pred cCCcCCCCeeeE
Confidence 359999999864
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=51.32 E-value=5.5 Score=40.68 Aligned_cols=52 Identities=17% Similarity=0.536 Sum_probs=34.8
Q ss_pred hhhcccccccccccccceEEec-CCCcccChhhHHcC----CCCCCCc--ccccCeeeee
Q 012197 414 LQTEKILCRICFEEQINILLLP-CRHHILCRTCGEKC----KKCPICR--VFIEERLPIY 466 (468)
Q Consensus 414 ~~~~~~~C~IC~~~~~~vv~~P-CgH~~~C~~Ca~~l----~~CPiCR--~~I~~~ikiy 466 (468)
...+...|++|.....|...+- -|-+ +|..|..+- ++||+=. ..+...+|+|
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 3345678999999877644433 3554 999999873 7899844 3444455554
No 84
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.46 E-value=8.7 Score=34.33 Aligned_cols=26 Identities=27% Similarity=0.797 Sum_probs=16.7
Q ss_pred cccccccccccccceEEecCCCcccChhhHH
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGE 447 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~ 447 (468)
++..|-||....-. --|||. |..|..
T Consensus 64 ddatC~IC~KTKFA---DG~GH~--C~YCq~ 89 (169)
T KOG3799|consen 64 DDATCGICHKTKFA---DGCGHN--CSYCQT 89 (169)
T ss_pred cCcchhhhhhcccc---cccCcc--cchhhh
Confidence 55699999876422 258887 445443
No 85
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=47.00 E-value=9.7 Score=45.92 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=35.6
Q ss_pred hhhcccccccccccccc---eEEecCCCcccChhhHHcC--------------CCCCCCcccccCe
Q 012197 414 LQTEKILCRICFEEQIN---ILLLPCRHHILCRTCGEKC--------------KKCPICRVFIEER 462 (468)
Q Consensus 414 ~~~~~~~C~IC~~~~~~---vv~~PCgH~~~C~~Ca~~l--------------~~CPiCR~~I~~~ 462 (468)
.|+.+..|.||+.+.-. .+=+-|+|. +=.+|...+ -.||+|.++|...
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34555689999997443 455699998 778887763 3599999998753
No 86
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=13 Score=39.00 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=32.2
Q ss_pred ccccccccccccc---eEEecCCCcccChhhHHcC-------CCCCCCccc--ccCeeeeec
Q 012197 418 KILCRICFEEQIN---ILLLPCRHHILCRTCGEKC-------KKCPICRVF--IEERLPIYD 467 (468)
Q Consensus 418 ~~~C~IC~~~~~~---vv~~PCgH~~~C~~Ca~~l-------~~CPiCR~~--I~~~ikiy~ 467 (468)
-..|+|=.+...+ .+-++|||+ .|.+-..++ =|||+|-.. .++..|+|+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred eeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 3467776554322 455699999 789988876 269999864 344555553
No 87
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.83 E-value=10 Score=42.04 Aligned_cols=37 Identities=30% Similarity=0.889 Sum_probs=29.1
Q ss_pred cccccccc----cccceEEecCCCcccChhhHHcC--CCCCCCcc
Q 012197 419 ILCRICFE----EQINILLLPCRHHILCRTCGEKC--KKCPICRV 457 (468)
Q Consensus 419 ~~C~IC~~----~~~~vv~~PCgH~~~C~~Ca~~l--~~CPiCR~ 457 (468)
..|.||.. .....+.+-|||. .|..|+..+ ..|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCc
Confidence 47889954 3556788899999 899999997 6799 543
No 88
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=40.28 E-value=10 Score=33.91 Aligned_cols=31 Identities=19% Similarity=0.677 Sum_probs=25.3
Q ss_pred ccccccccccc---cceEEecCC------CcccChhhHHcC
Q 012197 418 KILCRICFEEQ---INILLLPCR------HHILCRTCGEKC 449 (468)
Q Consensus 418 ~~~C~IC~~~~---~~vv~~PCg------H~~~C~~Ca~~l 449 (468)
..+|.||+++- ..+|.++|| |. +|.+|..+-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHH
Confidence 56899999973 468999999 44 899998875
No 89
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.06 E-value=18 Score=37.03 Aligned_cols=44 Identities=36% Similarity=0.803 Sum_probs=34.7
Q ss_pred ccccccccc----ccceEEecCCCcccChhhHHcC----CCCCCCcccccCee
Q 012197 419 ILCRICFEE----QINILLLPCRHHILCRTCGEKC----KKCPICRVFIEERL 463 (468)
Q Consensus 419 ~~C~IC~~~----~~~vv~~PCgH~~~C~~Ca~~l----~~CPiCR~~I~~~i 463 (468)
..|.+|.+. ..+.+=-||+|. .|..|.... ..||.||++.....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 589999984 344555688999 999999886 67999998776643
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=39.84 E-value=14 Score=34.14 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=28.9
Q ss_pred hcccccccccccccceEEecCCCcccC----hhhHHc------CCCCCCCccccc
Q 012197 416 TEKILCRICFEEQINILLLPCRHHILC----RTCGEK------CKKCPICRVFIE 460 (468)
Q Consensus 416 ~~~~~C~IC~~~~~~vv~~PCgH~~~C----~~Ca~~------l~~CPiCR~~I~ 460 (468)
+++..|.||++...+. ..||.-.+.- .+|..+ -..|++|+++..
T Consensus 6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3556899999987643 4588744322 345543 267999998763
No 91
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.53 E-value=14 Score=37.68 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=27.9
Q ss_pred cccccccccc-------------------ccceEEecCCCcccChhhHHc------C--------CCCCCCcccccC
Q 012197 418 KILCRICFEE-------------------QINILLLPCRHHILCRTCGEK------C--------KKCPICRVFIEE 461 (468)
Q Consensus 418 ~~~C~IC~~~-------------------~~~vv~~PCgH~~~C~~Ca~~------l--------~~CPiCR~~I~~ 461 (468)
..+|++|... ..+-.|-||||+ |.+=..+ + ..||.|-+...+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4689999763 334567899998 4332222 1 359999987765
No 92
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.42 E-value=14 Score=23.61 Aligned_cols=15 Identities=47% Similarity=1.267 Sum_probs=7.3
Q ss_pred ChhhHHcC----CCCCCCc
Q 012197 442 CRTCGEKC----KKCPICR 456 (468)
Q Consensus 442 C~~Ca~~l----~~CPiCR 456 (468)
|.+|...+ +.||.|-
T Consensus 3 CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCG 21 (26)
T ss_pred CCCCcCCchhhcCcCCCCC
Confidence 44444443 4566554
No 93
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=33.97 E-value=2.5e+02 Score=29.31 Aligned_cols=171 Identities=13% Similarity=0.178 Sum_probs=82.9
Q ss_pred EehhhhhHHHHHHHHHHHHhhhhhccCCCCCCcchhhHHHhhc-chhHHHHHHHHHHHHH-hhhhhhc--cCceeeecce
Q 012197 108 LKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETL-PHFWVAISMIFLLAAT-IFTLLKL--CGDVATLGWW 183 (468)
Q Consensus 108 ~~~Vf~Pl~~l~~~~~v~~~~~c~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~-i~l~LKL--Dg~~~~~~W~ 183 (468)
.+.-.+|+++.+.+... |.+---...+..+-.-+..|+.- -.--.....++-+++. ++.+... |++....+|.
T Consensus 85 ~s~lYip~~~~L~~Li~---R~v~fefR~k~~~~~~k~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~ 161 (346)
T COG1294 85 FSGLYLPMILVLFGLIF---RGVAFEFRSKIEDPRWKKFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFD 161 (346)
T ss_pred HHHHHHHHHHHHHHHHH---hhhhhhhcccccChhhHhHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHH
Confidence 45567899888887764 76533333222222222333220 0000011222222222 4444444 4544556899
Q ss_pred ehhhHHHHHHHHHhhh--hcccCCccccccccccCCCCCcceeeeeeeccceeecCCcchhhhhchhhHHHHHHHHHHHH
Q 012197 184 DLFINFGIAECFAFLV--CTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIP 261 (468)
Q Consensus 184 ~vFiPlwi~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 261 (468)
..+-|.-++-+..... ..++. .|- ...++.+.++| ..........+...+
T Consensus 162 ~l~~pf~~l~gl~~~~~~~l~Ga-----------------------~~l---~~kT~g~l~~r--A~~~a~~~~~~~~~~ 213 (346)
T COG1294 162 QLLNPFALLCGLGLVLMYVLHGA-----------------------AWL---LLKTEGALQER--ARKLARIAALLTLVG 213 (346)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH-----------------------HHH---HHHhccHHHHH--HHHHHHHHHHHHHHH
Confidence 9998877765444442 11110 011 12234444444 234444444455555
Q ss_pred HHHHHHHHHHhhcCCCCc-CCCCChhhhHHHHHHHHHhhhhhheeeecc
Q 012197 262 FICFQIMLFMYLEGTPSR-ARNIPLRVIFAPLLLLQATGVLFAVYRLLE 309 (468)
Q Consensus 262 ll~f~iLL~~~L~~~~~~-~~~~~~~~vf~Pl~il~~~~~~f~~~~~~e 309 (468)
.+++-++..-.+++...+ -.+.|+..++.|+-++..+......++-.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~l~v~~~~l~~~~~~~~~~ 262 (346)
T COG1294 214 FLLFGVWVTPGLDGFAASRWFSLPWLFLFSLLPVVGALLAVLLKRKGRG 262 (346)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566776666666664110 135777778877777766655555554444
No 94
>PLN02189 cellulose synthase
Probab=33.45 E-value=26 Score=41.25 Aligned_cols=43 Identities=30% Similarity=0.694 Sum_probs=31.8
Q ss_pred cccccccccc----ccceEEecCC--CcccChhhHHcC-----CCCCCCccccc
Q 012197 418 KILCRICFEE----QINILLLPCR--HHILCRTCGEKC-----KKCPICRVFIE 460 (468)
Q Consensus 418 ~~~C~IC~~~----~~~vv~~PCg--H~~~C~~Ca~~l-----~~CPiCR~~I~ 460 (468)
...|.||-|. ...=.|+.|+ ....|..|..-. +.||.|++..+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3479999997 4445777776 234899998643 67999998776
No 95
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=32.07 E-value=25 Score=35.61 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=19.6
Q ss_pred hccccccccccc---ccceEEecCCCcccChhhHH
Q 012197 416 TEKILCRICFEE---QINILLLPCRHHILCRTCGE 447 (468)
Q Consensus 416 ~~~~~C~IC~~~---~~~vv~~PCgH~~~C~~Ca~ 447 (468)
.....|+||+-. ....+-.+|-|.. =..|..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~-H~~Cla 146 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYM-HFACLA 146 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHH-HHHHHH
Confidence 345678888654 3336777999984 344543
No 96
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=30.58 E-value=11 Score=31.65 Aligned_cols=38 Identities=21% Similarity=0.558 Sum_probs=30.4
Q ss_pred cccccccccccccceEEecCCCcccChhhHHcCCCCCCCcccc
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFI 459 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I 459 (468)
....|..|.++...-.+ |. .|..||.....|+-|..+-
T Consensus 54 ~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 54 QPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred CCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 34589999988766554 66 8999999999999998763
No 97
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=30.30 E-value=5.2 Score=32.96 Aligned_cols=38 Identities=34% Similarity=0.663 Sum_probs=29.5
Q ss_pred cccccccccccceEEecCCCcccChhhHHcCCCCCCCcccccCe
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEER 462 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I~~~ 462 (468)
..|.||... |-.|=-|. |..||-+-..|.+|-+.|.+.
T Consensus 55 ~kC~iCk~~----vHQ~GshY--C~tCAY~KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 55 AKCRICKQL----VHQPGSHY--CQTCAYKKGICAMCGKKILNT 92 (100)
T ss_pred chhHHHHHH----hcCCcchh--HhHhhhhhhHHHHhhhHhhcc
Confidence 479999764 33454574 999999999999999988664
No 98
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=30.17 E-value=27 Score=29.24 Aligned_cols=38 Identities=26% Similarity=0.550 Sum_probs=29.4
Q ss_pred ccccccccccccceEEecCCCcccChhhHHcCCCCCCCcccccC
Q 012197 418 KILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEE 461 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l~~CPiCR~~I~~ 461 (468)
...|.+|....... ||. +|..||-+-..|.+|-..|.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~-YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAK-YCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCc-cChhhhcccCcccccCCeecc
Confidence 34799998764331 333 799999999999999998854
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=28.26 E-value=17 Score=40.93 Aligned_cols=42 Identities=36% Similarity=0.751 Sum_probs=35.8
Q ss_pred cccccccccccceEEecCCCcccChhhHHcC-------CCCCCCcccccC
Q 012197 419 ILCRICFEEQINILLLPCRHHILCRTCGEKC-------KKCPICRVFIEE 461 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~PCgH~~~C~~Ca~~l-------~~CPiCR~~I~~ 461 (468)
.+|.||......-+.+-|.|. +|..|.... +.||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 489999998888888999998 899998874 579999977664
No 100
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.23 E-value=28 Score=35.21 Aligned_cols=38 Identities=32% Similarity=0.717 Sum_probs=31.6
Q ss_pred cccccccccccceEEec-CCCcccChhhHHc-----CCCCCCCcc
Q 012197 419 ILCRICFEEQINILLLP-CRHHILCRTCGEK-----CKKCPICRV 457 (468)
Q Consensus 419 ~~C~IC~~~~~~vv~~P-CgH~~~C~~Ca~~-----l~~CPiCR~ 457 (468)
..|..|..--++.+=.| |+|. +|.+|... -.+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 68999999988888876 4666 99999984 378999976
No 101
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=27.43 E-value=30 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=23.8
Q ss_pred ccccccccccccceEE-ecCCCcccChhhHHcC------CCCCC
Q 012197 418 KILCRICFEEQINILL-LPCRHHILCRTCGEKC------KKCPI 454 (468)
Q Consensus 418 ~~~C~IC~~~~~~vv~-~PCgH~~~C~~Ca~~l------~~CPi 454 (468)
...|+|....-.+.|- ..|||. +..+...+. .+||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 4589999999888776 499998 888887763 45887
No 102
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.62 E-value=31 Score=35.60 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=17.4
Q ss_pred cccccccccccccceEEecCCCcccChhhH
Q 012197 417 EKILCRICFEEQINILLLPCRHHILCRTCG 446 (468)
Q Consensus 417 ~~~~C~IC~~~~~~vv~~PCgH~~~C~~Ca 446 (468)
.+..|++|-|+....-+ |-+ .|+.|-
T Consensus 14 l~ElCPVCGDkVSGYHY---GLL-TCESCK 39 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYHY---GLL-TCESCK 39 (475)
T ss_pred cccccccccCcccccee---eee-ehhhhh
Confidence 45689999999877543 222 677663
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.53 E-value=23 Score=40.41 Aligned_cols=45 Identities=36% Similarity=0.640 Sum_probs=32.0
Q ss_pred hccccccccccc--ccceEEecCCCccc----ChhhHHc------CCCCCCCccccc
Q 012197 416 TEKILCRICFEE--QINILLLPCRHHIL----CRTCGEK------CKKCPICRVFIE 460 (468)
Q Consensus 416 ~~~~~C~IC~~~--~~~vv~~PCgH~~~----C~~Ca~~------l~~CPiCR~~I~ 460 (468)
+|+..|+||..+ +-+..+.||..... =++|..+ .++|-+|..+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 355789999887 55789999985432 2456544 278999998764
No 104
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.85 E-value=27 Score=32.10 Aligned_cols=24 Identities=33% Similarity=0.830 Sum_probs=20.4
Q ss_pred cChhhHHc-CCCCCCCcccccCeee
Q 012197 441 LCRTCGEK-CKKCPICRVFIEERLP 464 (468)
Q Consensus 441 ~C~~Ca~~-l~~CPiCR~~I~~~ik 464 (468)
+|..|..+ +.+||-|..+|.+...
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYH 54 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCcee
Confidence 89999877 5899999999998643
No 105
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.16 E-value=1.5e+02 Score=21.67 Aligned_cols=8 Identities=13% Similarity=0.875 Sum_probs=4.8
Q ss_pred HHHHHHHH
Q 012197 10 WGRVFKSL 17 (468)
Q Consensus 10 ~~~~~~~~ 17 (468)
|++++|.|
T Consensus 5 ~~~~~~~f 12 (56)
T PF12911_consen 5 WKDAWRRF 12 (56)
T ss_pred HHHHHHHH
Confidence 55666666
No 106
>PHA03096 p28-like protein; Provisional
Probab=22.14 E-value=1e+02 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.0
Q ss_pred cccccccccc--------cceEEecCCCcccChhhHHc----------CCCCCCCcccc
Q 012197 419 ILCRICFEEQ--------INILLLPCRHHILCRTCGEK----------CKKCPICRVFI 459 (468)
Q Consensus 419 ~~C~IC~~~~--------~~vv~~PCgH~~~C~~Ca~~----------l~~CPiCR~~I 459 (468)
..|-||+++. +.-++--|.|. +|..|... .+.||.||..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 5799999863 33566799998 99999874 24466666544
No 107
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.43 E-value=34 Score=23.10 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=11.4
Q ss_pred CCCCCCCcccccCeee
Q 012197 449 CKKCPICRVFIEERLP 464 (468)
Q Consensus 449 l~~CPiCR~~I~~~ik 464 (468)
-..||+|.++-+...+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3689999987665443
Done!