BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012198
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 423 LEEEGLEIRWSELLIKKKIGEGSFGTVYHAEWRNS 457
++ + ++I W +L IK+KIG GSFGTV+ AEW S
Sbjct: 27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGS 61
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 423 LEEEGLEIRWSELLIKKKIGEGSFGTVYHAEWRNS 457
++ + ++I W +L IK+KIG GSFGTV+ AEW S
Sbjct: 27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGS 61
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI SE+++ +IG GSFGTVY +W V++ +
Sbjct: 32 EIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKV 68
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 408 EANLSVMST-------SNRELYLEEEGLEIRWSELLIKKKIGEGSFGTVYHAEWRNSVSI 460
E NLS++S S ++L+E +I + +L I + IG+G FG VYH W V+I
Sbjct: 3 EMNLSLLSARSFPRKASQTSIFLQE--WDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAI 60
Query: 461 FFFSI 465
I
Sbjct: 61 RLIDI 65
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 20 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 56
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 32 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 68
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 20 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 56
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 31 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 67
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 8 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 44
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 32 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 68
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 24 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 60
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 9 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 45
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 9 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 45
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 4 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 40
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 4 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 40
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 4 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 40
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 429 EIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIFFFSI 465
EI ++ + ++IG GSFGTVY +W V++ ++
Sbjct: 6 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNV 42
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 428 LEIRWSELLIKKKIGEGSFGTVYHAEW 454
LEI ++EL +++ IG G FG VY A W
Sbjct: 2 LEIDFAELTLEEIIGIGGFGKVYRAFW 28
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 391 SAFSTLKPYV-----TNNHLLMEANLSVMSTSNRELYLEEEGLEIRWSELLIKKKIGEGS 445
S FSTL+ V N+ L + ++ MS+ ++ + E++ EI L ++KK+G G
Sbjct: 136 STFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPW-EKDAWEIPRESLKLEKKLGAGQ 194
Query: 446 FGTVYHAEWRNSVSI 460
FG V+ A + +
Sbjct: 195 FGEVWMATYNKHTKV 209
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 391 SAFSTLKPYV-----TNNHLLMEANLSVMSTSNRELYLEEEGLEIRWSELLIKKKIGEGS 445
S FSTL+ V N+ L + ++ MS+ ++ + E++ EI L ++KK+G G
Sbjct: 142 STFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPW-EKDAWEIPRESLKLEKKLGAGQ 200
Query: 446 FGTVYHAEWRNSVSI 460
FG V+ A + +
Sbjct: 201 FGEVWMATYNKHTKV 215
>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 464
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 122 LSIKVILIDKSSDPNLKELHNRVLSLLCDRITAEEAVHQLANLVCNHMGGTTSTEEE--- 178
L ++ +K+ P L++L +RV T ++Q N++ N + T ++
Sbjct: 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT----MYQYVNMIDNKLVKTQKQRKDNDI 142
Query: 179 ---EFDKQWSECAEHLKDCLNSVVLPIGSLSVGLCVHRALLFKVLADLINLPCRIAKGCK 235
E++ + ++KD L++ ++ L V RA++ + + L IA
Sbjct: 143 ILSEYNTEMELHYNYIKDNLDN------NIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196
Query: 236 YCRRDDASSCLVQIGPDRE 254
YCR +SC + + RE
Sbjct: 197 YCRSPCVASCNIPVVSGRE 215
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 428 LEIRWSELLIKKKIGEGSFGTVYHAEWRNSVSIF 461
++++ + ++ K +G+GSFG V+ AE++ + F
Sbjct: 12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFF 45
>pdb|3BDR|A Chain A, Crystal Structure Of Fatty Acid-Binding Protein-Like Ycf58
From Thermosynecoccus Elongatus. Northeast Structural
Genomics Consortium Target Ter13
Length = 190
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 319 DDPSGTAIDQDYKPDPQ--ALFQRASWNVTADRDLQMQNPSGPSTHVIDSSNFIKGPLLR 376
DDP+ A+ Q Y DP R SW+ T + D + S + D + +G LLR
Sbjct: 47 DDPAVIALCQQYDXDPAWAVCGARVSWDGTXEWDNEKHEGSTVLVPIXDQGSRXEGKLLR 106
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 430 IRWSELLIKKKIGEGSFGTVYHAEWRN 456
I+ ++++K+++GEG+FG V+ AE N
Sbjct: 12 IKRRDIVLKRELGEGAFGKVFLAECYN 38
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 33 ALRLSSQAASADDPHFLALSSCDRHTDSAETVSHRFWVNGCLSYFDRIL-DGFYLIHGMD 91
A ++ A S D P F+ + D++T + VS+ CL+ +++ D F +I G+
Sbjct: 118 AKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 177
Query: 92 PYTWSIGTNQR 102
+I Q+
Sbjct: 178 TTVHAITATQK 188
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 ALRLSSQAASADDPHFLALSSCDRHTDSAETVSHRFWVNGCLSYFDRIL-DGFYLIHGMD 91
A R+ A SAD P F+ + +++ +S + +S+ CL+ +++ D F ++ G+
Sbjct: 116 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175
Query: 92 PYTWSIGTNQR 102
+I Q+
Sbjct: 176 TTVHAITATQK 186
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 33 ALRLSSQAASADDPHFLALSSCDRHTDSAETVSHRFWVNGCLSYFDRIL-DGFYLIHGMD 91
A ++ A S D P F+ + D++T + VS+ CL+ +++ D F +I G+
Sbjct: 117 AKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 176
Query: 92 PYTWSIGTNQR 102
+I Q+
Sbjct: 177 TTVHAITATQK 187
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 ALRLSSQAASADDPHFLALSSCDRHTDSAETVSHRFWVNGCLSYFDRIL-DGFYLIHGMD 91
A R+ A SAD P F+ + +++ +S + +S+ CL+ +++ D F ++ G+
Sbjct: 119 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLM 178
Query: 92 PYTWSIGTNQR 102
+I Q+
Sbjct: 179 TTVHAITATQK 189
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 33 ALRLSSQAASADDPHFLALSSCDRHTDSAETVSHRFWVNGCLSYFDRIL-DGFYLIHGMD 91
A R+ A SAD P F+ + +++ +S + VS+ CL+ +++ D F ++ G+
Sbjct: 113 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLM 172
Query: 92 PYTWSIGTNQR 102
+I Q+
Sbjct: 173 TTVHAITATQK 183
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96
pdb|2QX5|B Chain B, Structure Of Nucleoporin Nic96
Length = 661
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 130 DKSSDPNLKELHNRVLSLLCDRITAEEAVHQLANLVCNHMGGTTSTEEEEFDKQWSECAE 189
D +S+ N L R+ S+ D +H +C + +S E F+KQW E
Sbjct: 500 DDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLS 559
Query: 190 HLK 192
++
Sbjct: 560 QME 562
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96
pdb|2RFO|B Chain B, Crystral Structure Of The Nucleoporin Nic96
Length = 651
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 130 DKSSDPNLKELHNRVLSLLCDRITAEEAVHQLANLVCNHMGGTTSTEEEEFDKQWSECAE 189
D +S+ N L R+ S+ D +H +C + +S E F+KQW E
Sbjct: 490 DDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLS 549
Query: 190 HLK 192
++
Sbjct: 550 QME 552
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,406,074
Number of Sequences: 62578
Number of extensions: 584203
Number of successful extensions: 1729
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 34
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)