Query         012199
Match_columns 468
No_of_seqs    185 out of 2156
Neff          11.1
Searched_HMMs 46136
Date          Fri Mar 29 00:06:05 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012199hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.5E-79 3.1E-84  578.5  43.3  413   20-445    21-463 (489)
  2 PLN02196 abscisic acid 8'-hydr 100.0 8.3E-79 1.8E-83  586.5  42.9  434   18-467    28-461 (463)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 7.9E-79 1.7E-83  564.3  40.8  452   10-468    16-498 (499)
  4 PLN02500 cytochrome P450 90B1  100.0 2.5E-78 5.4E-83  588.4  43.9  436   19-468    32-489 (490)
  5 PLN02774 brassinosteroid-6-oxi 100.0 6.6E-78 1.4E-82  580.7  45.1  434   19-467    25-462 (463)
  6 PLN02302 ent-kaurenoic acid ox 100.0 2.3E-74 4.9E-79  563.3  47.2  440   19-468    36-487 (490)
  7 PLN03141 3-epi-6-deoxocathaste 100.0 7.2E-75 1.6E-79  558.4  42.8  435   20-468     2-449 (452)
  8 PLN02290 cytokinin trans-hydro 100.0 1.3E-74 2.9E-79  566.3  40.5  438   21-468    38-514 (516)
  9 PLN02971 tryptophan N-hydroxyl 100.0   5E-74 1.1E-78  562.6  44.0  433   21-467    53-532 (543)
 10 PTZ00404 cytochrome P450; Prov 100.0 3.5E-74 7.5E-79  559.2  41.9  436   15-468    19-482 (482)
 11 PLN02987 Cytochrome P450, fami 100.0 1.1E-73 2.4E-78  548.8  44.8  450    3-468     9-468 (472)
 12 PLN03234 cytochrome P450 83B1; 100.0 1.7E-73 3.7E-78  556.7  44.6  449    6-467    10-497 (499)
 13 PLN02183 ferulate 5-hydroxylas 100.0 2.8E-73   6E-78  555.6  44.4  417   19-446    30-483 (516)
 14 PLN02687 flavonoid 3'-monooxyg 100.0 3.8E-73 8.3E-78  554.7  43.4  440   19-468    28-508 (517)
 15 KOG0157 Cytochrome P450 CYP4/C 100.0 8.6E-75 1.9E-79  558.0  31.0  430   23-468    33-495 (497)
 16 PLN00168 Cytochrome P450; Prov 100.0 4.4E-73 9.6E-78  554.5  42.8  441   19-468    29-516 (519)
 17 PLN00110 flavonoid 3',5'-hydro 100.0 1.3E-72 2.8E-77  547.6  42.6  440   15-468    21-496 (504)
 18 PLN02394 trans-cinnamate 4-mon 100.0   3E-72 6.4E-77  548.5  42.8  446    7-468    12-501 (503)
 19 PLN03112 cytochrome P450 famil 100.0 9.7E-72 2.1E-76  545.9  43.0  441   14-468    21-507 (514)
 20 PLN02966 cytochrome P450 83A1  100.0 3.6E-71 7.8E-76  539.4  43.5  430    7-446    11-471 (502)
 21 PLN02169 fatty acid (omega-1)- 100.0 3.9E-71 8.4E-76  536.2  39.6  429   24-468    30-499 (500)
 22 PLN03195 fatty acid omega-hydr 100.0 9.8E-71 2.1E-75  538.6  38.7  429   26-468    31-515 (516)
 23 PLN02738 carotene beta-ring hy 100.0 1.9E-70 4.2E-75  538.6  38.9  402   52-468   153-594 (633)
 24 PF00067 p450:  Cytochrome P450 100.0 3.6E-71 7.9E-76  539.8  33.1  426   27-465     1-463 (463)
 25 KOG0159 Cytochrome P450 CYP11/ 100.0 2.5E-70 5.3E-75  495.4  35.1  428   24-468    49-517 (519)
 26 PLN03018 homomethionine N-hydr 100.0 5.8E-69 1.3E-73  522.7  44.4  430   25-468    40-523 (534)
 27 PLN02655 ent-kaurene oxidase   100.0 2.9E-69 6.3E-74  521.1  41.1  423   27-468     1-463 (466)
 28 KOG0684 Cytochrome P450 [Secon 100.0 1.2E-68 2.5E-73  472.3  38.1  427   25-467    31-483 (486)
 29 PLN02936 epsilon-ring hydroxyl 100.0 9.1E-67   2E-71  505.8  39.3  425   27-468    14-481 (489)
 30 PLN02426 cytochrome P450, fami 100.0 1.2E-65 2.5E-70  497.0  40.2  413   33-468    49-499 (502)
 31 PLN02648 allene oxide synthase 100.0 1.8E-62   4E-67  467.3  30.9  397   21-446    13-463 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 4.3E-58 9.2E-63  432.6  35.5  376   53-466    25-408 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  64.2     5.5 0.00012   25.7   1.8    8  394-401    44-51  (59)
 34 COG2101 SPT15 TATA-box binding  58.6     3.1 6.7E-05   33.4  -0.1   32  391-422    35-71  (185)
 35 PF09201 SRX:  SRX;  InterPro:   46.4      18 0.00038   27.9   2.2   23  415-437    18-40  (148)
 36 PF05952 ComX:  Bacillus compet  44.6      24 0.00052   22.6   2.3   23  292-314     4-26  (57)
 37 PF14459 Prok-E2_C:  Prokaryoti  41.0      14  0.0003   26.9   0.9   18  404-421   104-121 (131)
 38 PHA01327 hypothetical protein   40.9      17 0.00037   21.1   1.1   22  108-129     9-30  (49)
 39 PLN00062 TATA-box-binding prot  39.9      11 0.00025   31.0   0.4   50  391-440    29-85  (179)
 40 PF12508 DUF3714:  Protein of u  39.8      25 0.00054   29.6   2.4   44  331-375    51-94  (200)
 41 PRK06789 flagellar motor switc  37.4      47   0.001   22.7   3.0   40  338-377    21-63  (74)
 42 cd04516 TBP_eukaryotes eukaryo  36.4      11 0.00023   31.0  -0.2   51  391-442    29-87  (174)
 43 PF13625 Helicase_C_3:  Helicas  35.9      70  0.0015   24.7   4.3   39   53-93     77-115 (129)
 44 PF12554 MOZART1:  Mitotic-spin  34.5 1.1E+02  0.0025   18.8   4.6   42  270-311     6-47  (48)
 45 TIGR00589 ogt O-6-methylguanin  32.4      80  0.0017   22.0   3.6   60  302-365     2-66  (80)
 46 KOG3506 40S ribosomal protein   30.7      23  0.0005   22.2   0.6   11  408-418    12-22  (56)
 47 PF11138 DUF2911:  Protein of u  30.2      58  0.0013   25.8   2.9   41  356-397    52-99  (145)
 48 PRK13467 F0F1 ATP synthase sub  27.4      94   0.002   20.7   3.1   25  287-311    20-44  (66)
 49 COG4383 Mu-like prophage prote  26.8 1.3E+02  0.0027   28.1   4.7   75  330-414   112-187 (517)
 50 PF11227 DUF3025:  Protein of u  25.9      41 0.00089   28.4   1.5   21  377-397   191-211 (212)
 51 cd04518 TBP_archaea archaeal T  25.5      23  0.0005   29.1   0.0   30  391-420    29-63  (174)
 52 PF12273 RCR:  Chitin synthesis  24.3      81  0.0017   24.4   2.8    6   34-39     33-38  (130)
 53 PF09926 DUF2158:  Uncharacteri  23.6      65  0.0014   20.4   1.7   17   63-79      3-19  (53)
 54 TIGR01260 ATP_synt_c ATP synth  23.0 1.2E+02  0.0027   19.6   3.0   24  288-311    11-34  (58)
 55 PRK00394 transcription factor;  22.5      50  0.0011   27.3   1.4   30  391-420    28-62  (179)
 56 PRK13466 F0F1 ATP synthase sub  22.4 1.3E+02  0.0029   20.1   3.1   25  287-311    20-44  (66)
 57 PF14483 Cut8_M:  Cut8 dimerisa  21.9 1.5E+02  0.0033   17.2   2.9   11  299-309    25-35  (38)
 58 cd00652 TBP_TLF TATA box bindi  21.7      80  0.0017   26.0   2.4   51  391-442    29-87  (174)
 59 PHA03162 hypothetical protein;  21.5      61  0.0013   24.8   1.5   24  411-434     2-25  (135)
 60 PF14550 Peptidase_U35_2:  Puta  21.2      61  0.0013   24.8   1.5   22  354-375    71-92  (122)
 61 KOG3302 TATA-box binding prote  20.8      42 0.00091   27.7   0.6   52  391-442    50-117 (200)
 62 PRK05933 type III secretion sy  20.2 1.1E+02  0.0023   27.9   2.9   44  334-377   316-363 (372)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.5e-79  Score=578.50  Aligned_cols=413  Identities=29%  Similarity=0.423  Sum_probs=340.9

Q ss_pred             CCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceecc
Q 012199           20 SPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLN   99 (468)
Q Consensus        20 ~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~   99 (468)
                      .++..+.||||++||++||++++.   ....  |..+.++.++|||||++++|..++|||+|+++++|++.+++..|++|
T Consensus        21 ~~~~~~lPPGP~~lPiIGnl~~l~---~~~~--h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~R   95 (489)
T KOG0156|consen   21 YRKRRNLPPGPPPLPIIGNLHQLG---SLPP--HRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADR   95 (489)
T ss_pred             ccCCCCCCcCCCCCCccccHHHcC---CCch--hHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCC
Confidence            333388999999999999999983   2235  99999999999999999999999999999999999999999999999


Q ss_pred             cc-c-cccccc-CCCccccC-ChhHHHHHHHhhh-cCCChhHHhhhHHHHHHHHHHHHhhhCC----ccccHHHHHHHHH
Q 012199          100 LF-Y-TGQQVL-GPTSLLQT-NGEAHKRLRRLIA-EPLSVDGLKKYFQFINTLAIETLDQWSG----KKVLVLEEASTFT  170 (468)
Q Consensus       100 ~~-~-~~~~~~-g~~~~~~~-~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~d~~~~~~~~~  170 (468)
                      +. . ....+. |..++.++ +|+.|+.+||+.. ..++...+++....-.++++.+++.+.+    .++|+...+..++
T Consensus        96 p~~~~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~  175 (489)
T KOG0156|consen   96 PDPTATLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLV  175 (489)
T ss_pred             CCchhhHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHH
Confidence            75 1 223344 55777777 8999999999884 5555577777665556777777776642    6899999999999


Q ss_pred             HHHHHHHHcCCCCCh---hHHHHHHHHHHHHHhhhcc------CC---CCCCh--hhhhhcHHHHHHHHHHHHHHHHHHh
Q 012199          171 LKVIGNMIMSLEPTG---EEQEKFRANFKLISSSFAS------LP---LKIPG--TAFYRGIKARDRMYAMLDSIISKRR  236 (468)
Q Consensus       171 ~~~~~~~~fG~~~~~---~~~~~~~~~~~~~~~~~~~------~p---~~~p~--~~~~~~~~~~~~~~~~~~~~i~~~~  236 (468)
                      .+++++++||.+.+.   +...++.+.+......+..      +|   .+++.  ...++......++..++++.|++++
T Consensus       176 ~nvI~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~  255 (489)
T KOG0156|consen  176 GNVICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHR  255 (489)
T ss_pred             HHHHHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998663   2333355555555444332      23   11221  1223344445568889999998875


Q ss_pred             cCC--CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 012199          237 SGE--SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREI  314 (468)
Q Consensus       237 ~~~--~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~  314 (468)
                      ..-  ++.+|+++.+++...++     ....++++++...+.++++||+|||++++.|++.+|++||++|+|+++||+.+
T Consensus       256 ~~~~~~~~~D~vD~lL~~~~~~-----~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~v  330 (489)
T KOG0156|consen  256 EKIGDEEGRDFVDALLKLMKEE-----KAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEV  330 (489)
T ss_pred             hhhccCCCCcHHHHHHHhhccc-----ccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            531  22379999999843221     11229999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCC
Q 012199          315 QANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKF  393 (468)
Q Consensus       315 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f  393 (468)
                      .+   .++.++.+|+.+||||+|||+|++|++|++|. ++|.+++|+.++||.|||||.|+++.|++||||++|+||++|
T Consensus       331 vG---~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF  407 (489)
T KOG0156|consen  331 VG---KGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEF  407 (489)
T ss_pred             hC---CCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCcccc
Confidence            87   45669999999999999999999999999995 799999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecC
Q 012199          394 DPSRFDAPI----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEK  445 (468)
Q Consensus       394 ~P~R~l~~~----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~  445 (468)
                      +||||++..    ....++|||.|+|.|||..+|++++.+++++|+++|+|++.++
T Consensus       408 ~PERFl~~~d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~  463 (489)
T KOG0156|consen  408 KPERFLDSNDGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG  463 (489)
T ss_pred             ChhhhcCCccccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC
Confidence            999999963    5678999999999999999999999999999999999998876


No 2  
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=8.3e-79  Score=586.47  Aligned_cols=434  Identities=36%  Similarity=0.672  Sum_probs=371.4

Q ss_pred             hcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCccee
Q 012199           18 MASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVS   97 (468)
Q Consensus        18 ~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~   97 (468)
                      ....++.+.||||+++|++||+.+++   ..++  +.++.+++++||++|+++++++++|+++||+.+++++.++...++
T Consensus        28 ~~~~~~~~~Ppgp~~~P~iG~~~~~~---~~~~--~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~  102 (463)
T PLN02196         28 RSSSTKLPLPPGTMGWPYVGETFQLY---SQDP--NVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK  102 (463)
T ss_pred             cCCCCCCCCCCCCCCCCccchHHHHH---hcCH--HHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc
Confidence            44456677889999999999988763   2566  889999999999999999999999999999999999988776665


Q ss_pred             cccccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHH
Q 012199           98 LNLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWSGKKVLVLEEASTFTLKVIGNM  177 (468)
Q Consensus        98 ~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~~~  177 (468)
                      ..........+|..+++..+|+.|+++|+++++.|+.+.++.+.+.+.+.+.++++.|.+..+++.+.++.+++++++.+
T Consensus       103 ~~~~~~~~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~  182 (463)
T PLN02196        103 PTFPASKERMLGKQAIFFHQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLS  182 (463)
T ss_pred             ccCchHHHHHcCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCeEEeHHHHHHHHHHHHHHH
Confidence            43322233456656788899999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Q 012199          178 IMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGESIQQDFLESLIIKHSQAA  257 (468)
Q Consensus       178 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~ll~~~~~~~  257 (468)
                      +||.+.. .....+.+.+..+...+..+|.++|....++..++++.+.+++.+.++++++...+..|+++.+++      
T Consensus       183 ~fG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~d~l~~ll~------  255 (463)
T PLN02196        183 IFGKDEV-LYREDLKRCYYILEKGYNSMPINLPGTLFHKSMKARKELAQILAKILSKRRQNGSSHNDLLGSFMG------  255 (463)
T ss_pred             HcCCCCc-hHHHHHHHHHHHHhcchhcccccCCCccchHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHh------
Confidence            9998754 223334444443443344455556654456777888899999999998877654445689988875      


Q ss_pred             hhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHH
Q 012199          258 DEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTK  337 (468)
Q Consensus       258 ~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a  337 (468)
                      .    +..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++.+..+.++.++++++++||||+|
T Consensus       256 ~----~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~a  331 (463)
T PLN02196        256 D----KEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSR  331 (463)
T ss_pred             c----CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHH
Confidence            1    135899999999999999999999999999999999999999999999998875333456789999999999999


Q ss_pred             HHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCC
Q 012199          338 VISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAPIKTFSFLGFGSGPRMC  417 (468)
Q Consensus       338 ~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~Fg~G~r~C  417 (468)
                      ||+|+||++|++++..|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||++...+..++|||.|+|.|
T Consensus       332 vi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~~~~~~lpFG~G~r~C  411 (463)
T PLN02196        332 VIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAPKPNTFMPFGNGTHSC  411 (463)
T ss_pred             HHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCCCCCcccCcCCCCCCC
Confidence            99999999999998889999999999999999999999999999999999999999999999877778999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeee
Q 012199          418 PGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEP  467 (468)
Q Consensus       418 ~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  467 (468)
                      +|+++|+.|++++++.|+++|++++.+++..+.+.++..|+++++|+++.
T Consensus       412 ~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  461 (463)
T PLN02196        412 PGNELAKLEISVLIHHLTTKYRWSIVGTSNGIQYGPFALPQNGLPIALSR  461 (463)
T ss_pred             chHHHHHHHHHHHHHHHHHhcEEEEcCCCCceEEcccccCCCCceEEEec
Confidence            99999999999999999999999988776566677788999999999863


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=7.9e-79  Score=564.26  Aligned_cols=452  Identities=24%  Similarity=0.392  Sum_probs=355.2

Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhh
Q 012199           10 SFFFLMRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILL   89 (468)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~   89 (468)
                      +++++.++....+.++++|||+++|++||+..+...  ..+  ..+..+...+||+++.++.+.++.++|+|||.+++|+
T Consensus        16 l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~--~~~--~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~   91 (499)
T KOG0158|consen   16 LLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKR--ERP--GDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEIL   91 (499)
T ss_pred             HHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhc--cCc--HHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHH
Confidence            334444445557777899999999999999988532  223  3344444444599999999999999999999999999


Q ss_pred             cCCCcceec--ccccc-cccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhCC-----cccc
Q 012199           90 TGKDGMVSL--NLFYT-GQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWSG-----KKVL  161 (468)
Q Consensus        90 ~~~~~~~~~--~~~~~-~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----~~~d  161 (468)
                      .+.-+.|.+  +.... -..-.+..+++.++|++||++|..++|.||+..++++.+.+++...++++.+..     ..++
T Consensus        92 ik~F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~  171 (499)
T KOG0158|consen   92 IKDFDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGE  171 (499)
T ss_pred             HHhCccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            988777877  32211 111233478899999999999999999999999999999999999888887743     3789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHHHHhh-hccCCC------CCChh-----hhhhcHHHHHHHHHH
Q 012199          162 VLEEASTFTLKVIGNMIMSLEPTG--EEQEKFRANFKLISSS-FASLPL------KIPGT-----AFYRGIKARDRMYAM  227 (468)
Q Consensus       162 ~~~~~~~~~~~~~~~~~fG~~~~~--~~~~~~~~~~~~~~~~-~~~~p~------~~p~~-----~~~~~~~~~~~~~~~  227 (468)
                      +.+.+.+++.|+|++++||.+.+.  +....+.......... ....++      .+|..     .........+.+.+.
T Consensus       172 ~~dl~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~~~~~~~~~~~~~~~  251 (499)
T KOG0158|consen  172 IKDLCARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRVKLFPEDVTDFFRKL  251 (499)
T ss_pred             HHHHHHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhcccChHHHHHHHHHH
Confidence            999999999999999999987441  1112222211111111 111111      01110     011233455667777


Q ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHH
Q 012199          228 LDSIISKRRSGESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKL  307 (468)
Q Consensus       228 ~~~~i~~~~~~~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l  307 (468)
                      +.+.++.|..+...+.|+++.+++..............+|.++|+++++.|++||.||||+++++++|+||+|||+|+||
T Consensus       252 v~~~v~~R~~~~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kL  331 (499)
T KOG0158|consen  252 VNSRVEQREKENIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKL  331 (499)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHH
Confidence            77888777555566789999999855431111111126999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceec-CeEecCCCEEeecchhhccCCCC
Q 012199          308 REEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIE-GYKIVKGWSINLDVVSIHHDPGI  386 (468)
Q Consensus       308 r~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~-g~~ip~g~~v~~~~~~~~~d~~~  386 (468)
                      |+||+++..+   ...+|+|.+.+|+||++||+||||+||+++.+.|.+++|++++ ++.||||+.|.++.+++||||++
T Consensus       332 reEI~~~~~~---~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~  408 (499)
T KOG0158|consen  332 REEIDEVLEE---KEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEY  408 (499)
T ss_pred             HHHHHHHhcc---cCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCccc
Confidence            9999999652   2229999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCC----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CCCc---ccccCCC
Q 012199          387 FANPEKFDPSRFDAPI----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SVQP---TLVRMPR  458 (468)
Q Consensus       387 ~~~p~~f~P~R~l~~~----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~---~~~~~p~  458 (468)
                      ||||++|+||||.+..    ++..|+|||.|||.|+|++||.+|+|++|++||++|+++..+... ....   +.+..|+
T Consensus       409 ~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk  488 (499)
T KOG0158|consen  409 WPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPK  488 (499)
T ss_pred             CCCcccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCcccCCccceeeecC
Confidence            9999999999999743    578999999999999999999999999999999999999877322 1222   5678999


Q ss_pred             CCcceeeeeC
Q 012199          459 NKYPIAVEPL  468 (468)
Q Consensus       459 ~~~~~~~~~~  468 (468)
                      ++++++++++
T Consensus       489 ~gi~Lkl~~r  498 (499)
T KOG0158|consen  489 GGIWLKLEPR  498 (499)
T ss_pred             CceEEEEEeC
Confidence            9999999875


No 4  
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.5e-78  Score=588.41  Aligned_cols=436  Identities=29%  Similarity=0.571  Sum_probs=354.1

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhh-cCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCccee
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAF-SKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVS   97 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~-~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~   97 (468)
                      ...+..+.||||+++|++||++.+.... .+..  +.++.+++++||++|++++++.++|+++||+++++++.+++..|+
T Consensus        32 ~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~--~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~  109 (490)
T PLN02500         32 PKQKRFNLPPGNMGWPFLGETIGYLKPYSATSI--GEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFE  109 (490)
T ss_pred             cccCCCCCCCCCcCCCchhhHHHHHhhcccCCh--HHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEE
Confidence            3445566799999999999987654211 1334  778899999999999999999999999999999999998877676


Q ss_pred             cccccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhh-hHHHHHHHHHHHHhhhCC-ccccHHHHHHHHHHHHHH
Q 012199           98 LNLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKK-YFQFINTLAIETLDQWSG-KKVLVLEEASTFTLKVIG  175 (468)
Q Consensus        98 ~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~  175 (468)
                      .+.+.....++|..++++.+|+.|+++|+++.+.|+...++. +.+.+.+.+..+++.|.. ..+|+.+.+..+++++++
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~vi~  189 (490)
T PLN02500        110 CSYPRSIGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWKENSTFSAQDEAKKFTFNLMA  189 (490)
T ss_pred             eeCchHHHHHhCcccccccCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCCCCEEehHHHHHHHHHHHH
Confidence            554333334556457888899999999999999999988887 567888888888887754 678999999999999999


Q ss_pred             HHHcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcC---C---CcchhHHHHH
Q 012199          176 NMIMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSG---E---SIQQDFLESL  249 (468)
Q Consensus       176 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~---~~~~d~~~~l  249 (468)
                      +++||.+.+......+.+.+..+.......+.++|...+++..++.+.+.+++.++++++++.   .   ....|+++.+
T Consensus       190 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~l  269 (490)
T PLN02500        190 KHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDESVEEDDLLGWV  269 (490)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHhhhhcchhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcchHHHHH
Confidence            999998754333344444444443333223344554445566677788888888888766432   1   1245899988


Q ss_pred             HHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhh--CCCCCCChh
Q 012199          250 IIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANR--NGGSNLTWS  327 (468)
Q Consensus       250 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~--~~~~~~~~~  327 (468)
                      ++      .     ..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+|++++.+..  .++..++++
T Consensus       270 l~------~-----~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~  338 (490)
T PLN02500        270 LK------H-----SNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWE  338 (490)
T ss_pred             Hh------c-----cCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHH
Confidence            86      1     2489999999999999999999999999999999999999999999999886421  123468999


Q ss_pred             hhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCCC-----
Q 012199          328 EVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAPI-----  402 (468)
Q Consensus       328 ~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~-----  402 (468)
                      ++.+|||++|||+||||++|+++.++|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||+++.     
T Consensus       339 d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~  418 (490)
T PLN02500        339 DYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGS  418 (490)
T ss_pred             HhccCHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCccccc
Confidence            999999999999999999999998889999999999999999999999999999999999999999999998632     


Q ss_pred             ------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeeeC
Q 012199          403 ------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       403 ------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  468 (468)
                            .+..|+|||+|+|.|+|++||+.|+++++++|+++|+|++.+++..... ....+.++++|++++.
T Consensus       419 ~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  489 (490)
T PLN02500        419 SGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQAFAF-PFVDFPKGLPIRVRRI  489 (490)
T ss_pred             ccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCcceec-ccccCCCCceEEEEeC
Confidence                  2467999999999999999999999999999999999998777654433 2345668999999863


No 5  
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=6.6e-78  Score=580.75  Aligned_cols=434  Identities=29%  Similarity=0.511  Sum_probs=362.8

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceec
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSL   98 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~   98 (468)
                      ...+.+..||||+++|++||++.+.    .++  ..++.+++++||++|++++++.++++++||+.+++++.++...+..
T Consensus        25 ~~~~r~~~ppgp~~~P~~G~~~~~~----~~~--~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~   98 (463)
T PLN02774         25 VRYSKKGLPPGTMGWPLFGETTEFL----KQG--PDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVP   98 (463)
T ss_pred             hccCCCCCCCCCCCCCchhhHHHHH----Hhh--HHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEe
Confidence            3444456788999999999998873    345  7789999999999999999999999999999999999877665644


Q ss_pred             ccccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhh-hHHHHHHHHHHHHhhhCC-ccccHHHHHHHHHHHHHHH
Q 012199           99 NLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKK-YFQFINTLAIETLDQWSG-KKVLVLEEASTFTLKVIGN  176 (468)
Q Consensus        99 ~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~  176 (468)
                      +.......++|.+++++.+|+.|+++|+++.+.|+...++. +.+.+.+.+.+++++|.. +++|+.+.+..+++++++.
T Consensus        99 ~~~~~~~~~lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (463)
T PLN02774         99 GYPQSMLDILGTCNIAAVHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWDGLKTIDIQEKTKEMALLSALK  178 (463)
T ss_pred             cCCHHHHHHhCccchhhcCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEeeHHHHHHHHHHHHH
Confidence            43333345566567888899999999999999999998886 789999888888888865 6789999999999999999


Q ss_pred             HHcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Q 012199          177 MIMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGESIQQDFLESLIIKHSQA  256 (468)
Q Consensus       177 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~ll~~~~~~  256 (468)
                      ++||.... ....++...+..+......++.++|...+++..++++.+.+++.+.++++++.....+|+++.+++.    
T Consensus       179 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll~~----  253 (463)
T PLN02774        179 QIAGTLSK-PISEEFKTEFFKLVLGTLSLPIDLPGTNYRSGVQARKNIVRMLRQLIQERRASGETHTDMLGYLMRK----  253 (463)
T ss_pred             HHcCCCCh-HHHHHHHHHHHHHhcccccCCcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhC----
Confidence            99997644 3334444444444433334555677655667778889999999999988876554456999999861    


Q ss_pred             hhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHH
Q 012199          257 ADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTT  336 (468)
Q Consensus       257 ~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~  336 (468)
                         ..++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++.+.+...++..++++++.+||||+
T Consensus       254 ---~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~  330 (463)
T PLN02774        254 ---EGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTR  330 (463)
T ss_pred             ---ccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHH
Confidence               11223589999999999999999999999999999999999999999999999987532234568999999999999


Q ss_pred             HHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCCC--CCccccccCCCC
Q 012199          337 KVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAPI--KTFSFLGFGSGP  414 (468)
Q Consensus       337 a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~--~~~~~~~Fg~G~  414 (468)
                      |||+|+||++|+++++.|.+.+|++++||.||||+.|+++.+.+||||++|+||++|+||||++..  ....++|||+|+
T Consensus       331 a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~~~~~lpFG~G~  410 (463)
T PLN02774        331 AVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFLFGGGT  410 (463)
T ss_pred             HHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCCCccccCcCCCC
Confidence            999999999999998889999999999999999999999999999999999999999999999743  234699999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeee
Q 012199          415 RMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEP  467 (468)
Q Consensus       415 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  467 (468)
                      |.|||++||+.|++++++.|+++|++++.+++.. ...++..|+++++|+++|
T Consensus       411 r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~-~~~~~~~p~~g~~~~~~~  462 (463)
T PLN02774        411 RLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKL-MKFPRVEAPNGLHIRVSP  462 (463)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcc-ccCCCCCCCCCceEEeee
Confidence            9999999999999999999999999999876542 234556699999999986


No 6  
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=2.3e-74  Score=563.28  Aligned_cols=440  Identities=34%  Similarity=0.587  Sum_probs=361.6

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhh-cCCCchHHHHHHHHHhhCC--ceeeecCCceEEEEcChhhhhhhhcCCCcc
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAF-SKPSGIYSFVKERQQRYGK--VFKTYTLGRFSVIMTGREASKILLTGKDGM   95 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~-~~~~~~~~~~~~~~~~yG~--v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~   95 (468)
                      ...+..+.||||+++|++||++++.... ..++  +.++.+++++||+  +|++++++.+.++++||+.+++++.+++ .
T Consensus        36 ~~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~--~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~~-~  112 (490)
T PLN02302         36 LGEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNP--DSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDDD-A  112 (490)
T ss_pred             hccCCCCCcCCCCCCCccccHHHHHHhcccCCc--HHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCCC-c
Confidence            3455667899999999999998875422 2356  8889999999997  7899999999999999999999998764 4


Q ss_pred             eecccccccccccCCCccccCChhHHHHHHHhhhcCCC-hhHHhhhHHHHHHHHHHHHhhhCC-ccccHHHHHHHHHHHH
Q 012199           96 VSLNLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLS-VDGLKKYFQFINTLAIETLDQWSG-KKVLVLEEASTFTLKV  173 (468)
Q Consensus        96 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~~~  173 (468)
                      |.++.+......+|..++...+|+.|+++|+.+++.|+ .+.++.+.+.+++.+.++++++.+ +.+|+.+.+..+++++
T Consensus       113 f~~~~~~~~~~~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~~~v~~~~~~~~~~~~v  192 (490)
T PLN02302        113 FEPGWPESTVELIGRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSKMGEIEFLTELRKLTFKI  192 (490)
T ss_pred             cccCCchhHHHHhccccccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEehHHHHHHHHHHH
Confidence            55443322223556556677899999999999999995 678999999999999999998854 6799999999999999


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCC-----CcchhHHHH
Q 012199          174 IGNMIMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGE-----SIQQDFLES  248 (468)
Q Consensus       174 ~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~d~~~~  248 (468)
                      +++++||.+.+ .....+...+..+...+...+..+|...+.+..++++.+.+++.+.++++++..     ....|+++.
T Consensus       193 i~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~d~l~~  271 (490)
T PLN02302        193 IMYIFLSSESE-LVMEALEREYTTLNYGVRAMAINLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNISPRKKDMLDL  271 (490)
T ss_pred             HHHHHcCCCCh-HHHHHHHHHHHHHHHHhhhCCcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcCCHHHH
Confidence            99999998765 333444343433333333333345554455666777888888888888765432     134689999


Q ss_pred             HHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCC-CCCCChh
Q 012199          249 LIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNG-GSNLTWS  327 (468)
Q Consensus       249 ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~-~~~~~~~  327 (468)
                      +++.      .++++..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++.+.++... ...++++
T Consensus       272 ll~~------~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~  345 (490)
T PLN02302        272 LLDA------EDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLK  345 (490)
T ss_pred             HHhh------hccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            9872      12223458999999999999999999999999999999999999999999999998763211 2237999


Q ss_pred             hhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCC-CCCcc
Q 012199          328 EVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAP-IKTFS  406 (468)
Q Consensus       328 ~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~-~~~~~  406 (468)
                      ++++||||+|||+|+||++|+++..+|.+.+|++++||.||||+.|.++.+++||||++|+||++|+||||++. ..+..
T Consensus       346 ~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~~~~~  425 (490)
T PLN02302        346 DVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKAGT  425 (490)
T ss_pred             HHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCCCCCC
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999974 34578


Q ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeeeC
Q 012199          407 FLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       407 ~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  468 (468)
                      ++|||+|+|.|+|++||..|++++++.|+++|++++.++...+.+.+...|.++++++++++
T Consensus       426 ~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  487 (490)
T PLN02302        426 FLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGCKVMYLPHPRPKDNCLARITKV  487 (490)
T ss_pred             ccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCCcceeCCCCCCCCCceEEEEec
Confidence            99999999999999999999999999999999999987655566566789999999999874


No 7  
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=7.2e-75  Score=558.41  Aligned_cols=435  Identities=34%  Similarity=0.612  Sum_probs=363.2

Q ss_pred             CCCCCCCCCCccccccccchHHHHHh-hcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceec
Q 012199           20 SPKEMEGIPGSLGLPIVGESFAFLSA-FSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSL   98 (468)
Q Consensus        20 ~~~~~~~~Pgp~~~p~lG~~~~~~~~-~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~   98 (468)
                      .+++.+.||||+++|++||++.+... +..++  +.++.+++++||+||++++++.++++++||+++++++.+++..++.
T Consensus         2 ~~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~--~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~   79 (452)
T PLN03141          2 SKKKSRLPKGSLGWPVIGETLDFISCAYSSRP--ESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVP   79 (452)
T ss_pred             CCCCCCCCCCCCCCCchhhHHHHHhhcccCCh--HHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeec
Confidence            34566778999999999999887431 12356  8899999999999999999999999999999999999988877776


Q ss_pred             ccccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhh-hHHHHHHHHHHHHhhhC-CccccHHHHHHHHHHHHHHH
Q 012199           99 NLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKK-YFQFINTLAIETLDQWS-GKKVLVLEEASTFTLKVIGN  176 (468)
Q Consensus        99 ~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~~-~~~~d~~~~~~~~~~~~~~~  176 (468)
                      ++......++|..+++..+|+.|+++|+++++.|+...+.. +.+.+.+.+.+++++|. +..+++.+.+..++++++++
T Consensus        80 ~~~~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  159 (452)
T PLN03141         80 AYPKSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWRDDPPVLVQDETKKIAFEVLVK  159 (452)
T ss_pred             cCchhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCCCEEhHHHHHHHHHHHHHH
Confidence            64434445677567888899999999999999998877766 46777788887888774 46789999999999999999


Q ss_pred             HHcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCCC--------cchhHHHH
Q 012199          177 MIMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGES--------IQQDFLES  248 (468)
Q Consensus       177 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~d~~~~  248 (468)
                      ++||.+.+ ....++...+..+...+..+|.++|...+.+..++.+.+.+++.+++++++....        ...|+++.
T Consensus       160 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~  238 (452)
T PLN03141        160 ALISLEPG-EEMEFLKKEFQEFIKGLMSLPIKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVVDV  238 (452)
T ss_pred             HHcCCCch-HHHHHHHHHHHHHhhhHHhCccCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHHHH
Confidence            99998765 3445555555555555555566666655566667888999999999987654311        13588988


Q ss_pred             HHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-hCCCCCCChh
Q 012199          249 LIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQAN-RNGGSNLTWS  327 (468)
Q Consensus       249 ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~-~~~~~~~~~~  327 (468)
                      +++.      .   +..++++++..++..+++||+|||+++++|++++|++||++|+|+++|++++.+. ...+..++.+
T Consensus       239 ll~~------~---~~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~  309 (452)
T PLN03141        239 LLRD------G---SDELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWT  309 (452)
T ss_pred             HHhc------C---CCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHH
Confidence            8861      1   2358999999999999999999999999999999999999999999999887542 1234568999


Q ss_pred             hhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCC-CCCcc
Q 012199          328 EVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAP-IKTFS  406 (468)
Q Consensus       328 ~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~-~~~~~  406 (468)
                      ++.+||||+|||+|++|++|++++++|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||++. ..+..
T Consensus       310 ~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~  389 (452)
T PLN03141        310 DYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDMNNSS  389 (452)
T ss_pred             HHhccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCCCCCC
Confidence            99999999999999999999998889999999999999999999999999999999999999999999999974 34578


Q ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeeeC
Q 012199          407 FLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       407 ~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  468 (468)
                      |+|||+|+|.|+|++||+.|++++++.|+++|++++.++.. . ..++..|+++++|+++|+
T Consensus       390 ~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  449 (452)
T PLN03141        390 FTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI-V-NFPTVRMKRKLPIWVTRI  449 (452)
T ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe-e-ecccccCCCCceEEEEeC
Confidence            99999999999999999999999999999999999766542 2 246889999999999874


No 8  
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=1.3e-74  Score=566.35  Aligned_cols=438  Identities=22%  Similarity=0.327  Sum_probs=344.9

Q ss_pred             CCCCCCCCCccccccccchHHHHHhh---------------cCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhh
Q 012199           21 PKEMEGIPGSLGLPIVGESFAFLSAF---------------SKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREAS   85 (468)
Q Consensus        21 ~~~~~~~Pgp~~~p~lG~~~~~~~~~---------------~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~   85 (468)
                      ....++||||+++|++||++++....               ....  ...+.+|+++||++|++++++.++++++||+.+
T Consensus        38 ~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v  115 (516)
T PLN02290         38 IMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRL--LPHYVAWSKQYGKRFIYWNGTEPRLCLTETELI  115 (516)
T ss_pred             HHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCccccccc--chHHHHHHHHhCCeEEEccCCccEEEECCHHHH
Confidence            44667899999999999998874210               0112  335678999999999999999999999999999


Q ss_pred             hhhhcCCCcceeccccc--ccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhC-----C-
Q 012199           86 KILLTGKDGMVSLNLFY--TGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWS-----G-  157 (468)
Q Consensus        86 ~~i~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-----~-  157 (468)
                      ++++.++...+...+..  .....+| +++++.+|+.|+++|+++.+.|+.+.++.+.+.+.+.+..+++.+.     + 
T Consensus       116 ~~il~~~~~~~~r~~~~~~~~~~~~g-~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~  194 (516)
T PLN02290        116 KELLTKYNTVTGKSWLQQQGTKHFIG-RGLLMANGADWYHQRHIAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQ  194 (516)
T ss_pred             HHHHhcCCCCCCCcchhhhHHHHHhc-CCccccCchHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99998775433332211  1223456 6788899999999999999999999999999999999988888873     2 


Q ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHHHHhhh---ccCCC--CCChhhhhhcHHHHHHHHHHHHHH
Q 012199          158 KKVLVLEEASTFTLKVIGNMIMSLEPTG-EEQEKFRANFKLISSSF---ASLPL--KIPGTAFYRGIKARDRMYAMLDSI  231 (468)
Q Consensus       158 ~~~d~~~~~~~~~~~~~~~~~fG~~~~~-~~~~~~~~~~~~~~~~~---~~~p~--~~p~~~~~~~~~~~~~~~~~~~~~  231 (468)
                      .++|+.+.+..++++++++++||.+.+. .........+.......   ..+|.  ++|....++.....+.+.+++.+.
T Consensus       195 ~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~  274 (516)
T PLN02290        195 TEVEIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQATRHLCFPGSRFFPSKYNREIKSLKGEVERLLMEI  274 (516)
T ss_pred             ceEEhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhhhhhcCchhhhCCChhHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987541 11111111111111111   01221  133322334445567788888888


Q ss_pred             HHHHhcC---C---CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHH
Q 012199          232 ISKRRSG---E---SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQ  305 (468)
Q Consensus       232 i~~~~~~---~---~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~  305 (468)
                      ++++++.   .   ....|+++.+++....   ...++..++++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       275 i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~---~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~  351 (516)
T PLN02290        275 IQSRRDCVEIGRSSSYGDDLLGMLLNEMEK---KRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQD  351 (516)
T ss_pred             HHHHHHHhhcccCCCCCCCHHHHHHHhccc---cCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHH
Confidence            8766532   1   1246899999863211   01122348899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCC
Q 012199          306 KLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPG  385 (468)
Q Consensus       306 ~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~  385 (468)
                      |+|+|++++.+    +..++++++++||||+|||+||||++|+++.++|.+.+|++++||.|||||.|+++.+++||||+
T Consensus       352 kl~~Ei~~v~~----~~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~  427 (516)
T PLN02290        352 KVRAEVAEVCG----GETPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEE  427 (516)
T ss_pred             HHHHHHHHHhC----CCCCCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChh
Confidence            99999999976    23789999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CC-CCCCCCCCCCCCCCC--CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CCCcccccCCCCCc
Q 012199          386 IF-ANPEKFDPSRFDAPI--KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SVQPTLVRMPRNKY  461 (468)
Q Consensus       386 ~~-~~p~~f~P~R~l~~~--~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~  461 (468)
                      +| +||++|+||||++..  ....++|||.|+|.|+|++||++|++++++.|+++|++++.++.. ......+..|++++
T Consensus       428 ~~~~dP~~F~PeRfl~~~~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~  507 (516)
T PLN02290        428 LWGKDANEFNPDRFAGRPFAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGV  507 (516)
T ss_pred             hhCCChhhcCccccCCCCCCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcccCccceeeecCCCCC
Confidence            99 899999999999642  346799999999999999999999999999999999999876532 12225788999999


Q ss_pred             ceeeeeC
Q 012199          462 PIAVEPL  468 (468)
Q Consensus       462 ~~~~~~~  468 (468)
                      +++++++
T Consensus       508 ~~~~~~~  514 (516)
T PLN02290        508 QVCLKPL  514 (516)
T ss_pred             eEEEEeC
Confidence            9999874


No 9  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=5e-74  Score=562.60  Aligned_cols=433  Identities=17%  Similarity=0.269  Sum_probs=330.8

Q ss_pred             CCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhC-CceeeecCCceEEEEcChhhhhhhhcCCCcceecc
Q 012199           21 PKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYG-KVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLN   99 (468)
Q Consensus        21 ~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~   99 (468)
                      .++.+.||||+++|++||++++.   .+.+ .+.++.++.++|| +||++++|+.++|+|+||+.+++++.++...|.++
T Consensus        53 ~r~~~lPPGP~~lPiiGnl~~l~---~~~~-~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~r  128 (543)
T PLN02971         53 KKLHPLPPGPTGFPIVGMIPAML---KNRP-VFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASR  128 (543)
T ss_pred             CCCCCCCcCCCCCCcccchHHhc---cCCc-HhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCC
Confidence            34557899999999999998873   1222 2677889999999 79999999999999999999999999887778877


Q ss_pred             cccccccccCCC---ccccCChhHHHHHHHhhhcC-CChhHHhhhHHHHHHHHHHHHhhh----C-CccccHHHHHHHHH
Q 012199          100 LFYTGQQVLGPT---SLLQTNGEAHKRLRRLIAEP-LSVDGLKKYFQFINTLAIETLDQW----S-GKKVLVLEEASTFT  170 (468)
Q Consensus       100 ~~~~~~~~~g~~---~~~~~~g~~~~~~R~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~----~-~~~~d~~~~~~~~~  170 (468)
                      +.......+|.+   +++..+|+.|+++|+++.+. ++....+.+.+.+++.+..+++.+    . ++++|+.+.+.+++
T Consensus       129 p~~~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t  208 (543)
T PLN02971        129 PLTYAQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYC  208 (543)
T ss_pred             CcccchhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Confidence            543333444422   36778899999999999654 444556667777777666665543    2 35799999999999


Q ss_pred             HHHHHHHHcCCCCCh-------hHHHHHHHHHHHHHhhhc-----cCCCCCChh------h-hhhcHHHHHHHHHHHHHH
Q 012199          171 LKVIGNMIMSLEPTG-------EEQEKFRANFKLISSSFA-----SLPLKIPGT------A-FYRGIKARDRMYAMLDSI  231 (468)
Q Consensus       171 ~~~~~~~~fG~~~~~-------~~~~~~~~~~~~~~~~~~-----~~p~~~p~~------~-~~~~~~~~~~~~~~~~~~  231 (468)
                      ++++++++||.+...       ....+..+.+..+.....     .++.++|..      . .+...++.+.+.+++.++
T Consensus       209 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (543)
T PLN02971        209 GNAIKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPI  288 (543)
T ss_pred             HHHHHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999986421       011112222222221110     111112221      1 122334556677777777


Q ss_pred             HHHHhc----CC-CcchhHHHHHHHHhhhhhhhhhhc-CCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHH
Q 012199          232 ISKRRS----GE-SIQQDFLESLIIKHSQAADEEANE-DKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQ  305 (468)
Q Consensus       232 i~~~~~----~~-~~~~d~~~~ll~~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~  305 (468)
                      ++++++    +. ....|+++.+++..      ++++ ..++++++.+++.++++||+|||+++++|++++|+.||++|+
T Consensus       289 i~~~~~~~~~~~~~~~~d~l~~ll~~~------~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~  362 (543)
T PLN02971        289 IDERIKMWREGKRTQIEDFLDIFISIK------DEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILH  362 (543)
T ss_pred             HHHHHHHHhccCCCCCcCHHHHHHhhh------cccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHH
Confidence            776543    11 12369999999721      1111 248999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhccCC
Q 012199          306 KLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDP  384 (468)
Q Consensus       306 ~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~  384 (468)
                      |+|+|++.+.+   .++.++++++.+|||++|||+|+||++|+++. ++|.+.+|++++||.|||||.|+++.|++||||
T Consensus       363 kl~~EI~~v~g---~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~  439 (543)
T PLN02971        363 KAMEEIDRVVG---KERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNP  439 (543)
T ss_pred             HHHHHHHHHhC---CCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCCh
Confidence            99999999976   35778999999999999999999999999996 789999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC-------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCC----ccc
Q 012199          385 GIFANPEKFDPSRFDAPI-------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQ----PTL  453 (468)
Q Consensus       385 ~~~~~p~~f~P~R~l~~~-------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~----~~~  453 (468)
                      ++|+||++|+||||++..       .+..|+|||+|+|.|+|++||+.|+++++++|+++|+|++.+++....    ++ 
T Consensus       440 ~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-  518 (543)
T PLN02971        440 KVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-  518 (543)
T ss_pred             hhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-
Confidence            999999999999999632       245799999999999999999999999999999999999876553332    23 


Q ss_pred             ccCCCCCcceeeee
Q 012199          454 VRMPRNKYPIAVEP  467 (468)
Q Consensus       454 ~~~p~~~~~~~~~~  467 (468)
                      +..-++++.+.++|
T Consensus       519 ~~~~~~~~~~~~~~  532 (543)
T PLN02971        519 DMFLSKPLVMVGEL  532 (543)
T ss_pred             cccccccceeeeee
Confidence            33122356666655


No 10 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=3.5e-74  Score=559.15  Aligned_cols=436  Identities=19%  Similarity=0.321  Sum_probs=345.3

Q ss_pred             HHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCc
Q 012199           15 MRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDG   94 (468)
Q Consensus        15 ~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~   94 (468)
                      ..++..+.....+|||+++|++||+..+.    .++  +.++.+++++||++|++++++.++|+++||+.+++++.++..
T Consensus        19 ~~~~~~~~~~~~~pgp~~~p~~G~~~~~~----~~~--~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~   92 (482)
T PTZ00404         19 AYKKYKKIHKNELKGPIPIPILGNLHQLG----NLP--HRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFD   92 (482)
T ss_pred             HHHHhhhccCCCCCCCCCCCeeccHhhhc----ccH--HHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcch
Confidence            33444456677899999999999998772    355  889999999999999999999999999999999999987655


Q ss_pred             ceecccc-ccc-ccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhC-----CccccHHHHHH
Q 012199           95 MVSLNLF-YTG-QQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWS-----GKKVLVLEEAS  167 (468)
Q Consensus        95 ~~~~~~~-~~~-~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-----~~~~d~~~~~~  167 (468)
                      .|..+.. ... ...+| +++++.+|+.|+++|+++.+.|+...++++.+.+.+.+..+++.+.     +..+|+.+.+.
T Consensus        93 ~~~~r~~~~~~~~~~~~-~~l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~  171 (482)
T PTZ00404         93 NFSDRPKIPSIKHGTFY-HGIVTSSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLT  171 (482)
T ss_pred             hhcCCCCcceeeeeccC-CceeccChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Confidence            5655432 111 12234 7888899999999999999999999999999999999988888762     35689999999


Q ss_pred             HHHHHHHHHHHcCCCCChh------HHHHHHHHHHHHHhhhccC------CCCCCh--hhhhhcHHHHHHHHHHHHHHHH
Q 012199          168 TFTLKVIGNMIMSLEPTGE------EQEKFRANFKLISSSFASL------PLKIPG--TAFYRGIKARDRMYAMLDSIIS  233 (468)
Q Consensus       168 ~~~~~~~~~~~fG~~~~~~------~~~~~~~~~~~~~~~~~~~------p~~~p~--~~~~~~~~~~~~~~~~~~~~i~  233 (468)
                      .+++|+++.++||.+.+..      ....+.+....+...+...      +...|.  .......++.+.+.+++.+.++
T Consensus       172 ~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  251 (482)
T PTZ00404        172 KFTMSAMFKYIFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLYYQYLEHTDKNFKKIKKFIKEKYH  251 (482)
T ss_pred             HHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999864311      1233444444433322111      100110  0112223456677777777776


Q ss_pred             HHhcC--CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHH
Q 012199          234 KRRSG--ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       234 ~~~~~--~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      ++++.  .+...|+++.+++...       .......+++++++..+++||+|||+++++|++++|++||++|+|+++|+
T Consensus       252 ~~~~~~~~~~~~dll~~ll~~~~-------~~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei  324 (482)
T PTZ00404        252 EHLKTIDPEVPRDLLDLLIKEYG-------TNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEI  324 (482)
T ss_pred             HHHHccCCCCcccHHHHHHHHhc-------cCCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            65443  2235689999987321       11112334588999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCcccee-cCeEecCCCEEeecchhhccCCCCCCC
Q 012199          312 REIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEI-EGYKIVKGWSINLDVVSIHHDPGIFAN  389 (468)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~  389 (468)
                      +++.+   ++..++++++.+||||+|||+||||++|+++. ++|.+.+|+++ +||.|||||.|.++.+++||||++|+|
T Consensus       325 ~~v~~---~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~d  401 (482)
T PTZ00404        325 KSTVN---GRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFEN  401 (482)
T ss_pred             HHHhc---CCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCC
Confidence            99976   24568999999999999999999999999996 79999999999 999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCC---CCcccccCCCCCcceeee
Q 012199          390 PEKFDPSRFDAPIKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDS---VQPTLVRMPRNKYPIAVE  466 (468)
Q Consensus       390 p~~f~P~R~l~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~---~~~~~~~~p~~~~~~~~~  466 (468)
                      |++|+||||++...+..++|||+|+|.|+|++||++|+++++++|+++|+++..+++..   .....+..| +++++.++
T Consensus       402 P~~F~PeRwl~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  480 (482)
T PTZ00404        402 PEQFDPSRFLNPDSNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLE  480 (482)
T ss_pred             ccccCccccCCCCCCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeee
Confidence            99999999998777789999999999999999999999999999999999998665431   123455554 56899887


Q ss_pred             eC
Q 012199          467 PL  468 (468)
Q Consensus       467 ~~  468 (468)
                      ++
T Consensus       481 ~R  482 (482)
T PTZ00404        481 KR  482 (482)
T ss_pred             cC
Confidence            74


No 11 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=1.1e-73  Score=548.76  Aligned_cols=450  Identities=34%  Similarity=0.606  Sum_probs=357.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchHHHHHhh-cCCCchHHHHHHHHHhhCCceeeecCCceEEEEcC
Q 012199            3 LLAVFLLSFFFLMRSMASPKEMEGIPGSLGLPIVGESFAFLSAF-SKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTG   81 (468)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~-~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~d   81 (468)
                      |++++.++..++.++ ..+.+.+.||||+++|++||++++.... ..++  +.++.+++++||++|++++++.++++++|
T Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~--~~~~~~~~~~yG~v~~~~l~~~~~vvv~~   85 (472)
T PLN02987          9 LLSSLAAIFFLLLRR-TRYRRMRLPPGSLGLPLVGETLQLISAYKTENP--EPFIDERVARYGSLFMTHLFGEPTVFSAD   85 (472)
T ss_pred             HHHHHHHHHHHHHHh-hccCCCCCcCCCcCCCchhhHHHHHhhcccCCh--HHHHHHHHHHhchhhhhhhcCCCeEEEeC
Confidence            334444444444554 4466667899999999999998874211 1345  88899999999999999999999999999


Q ss_pred             hhhhhhhhcCCCcceecccccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhH-HHHHHHHHHHHhhhCCccc
Q 012199           82 REASKILLTGKDGMVSLNLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYF-QFINTLAIETLDQWSGKKV  160 (468)
Q Consensus        82 p~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~  160 (468)
                      |+.+++++.++...|..++......++|.+++++++|+.|+++|+++.+.++.+.++.+. ..+.+.+...+++|. +++
T Consensus        86 pe~~~~il~~~~~~f~~~~~~~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v  164 (472)
T PLN02987         86 PETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLDSWS-SRV  164 (472)
T ss_pred             HHHHHHHHhCCCceEEecCcHHHHHHhCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhc-cce
Confidence            999999999887777666443444666756888899999999999987644545555543 224445555566664 468


Q ss_pred             cHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHhhhccCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCC-
Q 012199          161 LVLEEASTFTLKVIGNMIMSLEPTGEEQEKFRANFKLISSSFASLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGE-  239 (468)
Q Consensus       161 d~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  239 (468)
                      ++.+.+.+++++++++++||.+.+ .....+.+.+......+...++.++...+++..++++++.+++.++++++++.. 
T Consensus       165 ~~~~~~~~~t~~vi~~~~fg~~~~-~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  243 (472)
T PLN02987        165 LLMEEAKKITFELTVKQLMSFDPG-EWTESLRKEYVLVIEGFFSVPLPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEE  243 (472)
T ss_pred             ehHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhhhhcCCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999997754 223333334443333332222211223466777889999999999998876531 


Q ss_pred             ---CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 012199          240 ---SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQA  316 (468)
Q Consensus       240 ---~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~  316 (468)
                         ....|+++.+++      ..    .+++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++.+.+
T Consensus       244 ~~~~~~~d~l~~ll~------~~----~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~  313 (472)
T PLN02987        244 EGAEKKKDMLAALLA------SD----DGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRA  313 (472)
T ss_pred             ccCcccccHHHHHHh------cC----CCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHc
Confidence               124689999986      11    25899999999999999999999999999999999999999999999998864


Q ss_pred             hhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCC
Q 012199          317 NRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPS  396 (468)
Q Consensus       317 ~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~  396 (468)
                      ..+.+..++++++.+|||++||++|+||++|++++++|++.+|++++||.||||+.|+++.+++|+||++|+||++|+||
T Consensus       314 ~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~Pe  393 (472)
T PLN02987        314 MKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPW  393 (472)
T ss_pred             ccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcc
Confidence            32234568999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             CCCCCC----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCCcccccCCCCCcceeeeeC
Q 012199          397 RFDAPI----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       397 R~l~~~----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  468 (468)
                      ||++..    .+..++|||+|+|.|+|++||+.|++++++.|+++|++++.+++. ..+.++.+|.++++++++++
T Consensus       394 Rfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~r  468 (472)
T PLN02987        394 RWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK-LVFFPTTRTQKRYPINVKRR  468 (472)
T ss_pred             cCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCc-eeecccccCCCCceEEEEec
Confidence            999732    246799999999999999999999999999999999999876653 44466899999999999874


No 12 
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=1.7e-73  Score=556.69  Aligned_cols=449  Identities=21%  Similarity=0.350  Sum_probs=350.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhh
Q 012199            6 VFLLSFFFLMRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREAS   85 (468)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~   85 (468)
                      +++++++++++ +...++.+.||||+++|++||+.++   ...++  +.++.+++++||++|++++++.++++++||+++
T Consensus        10 l~~~~~~~~~~-~~~~~~~~~pPgp~~~P~iG~~~~~---~~~~~--~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~   83 (499)
T PLN03234         10 LVAAAAFFFLR-STTKKSLRLPPGPKGLPIIGNLHQM---EKFNP--QHFLFRLSKLYGPIFTMKIGGRRLAVISSAELA   83 (499)
T ss_pred             HHHHHHHHHHH-HhcCCCCCCCcCCCCCCeeccHHhc---CCCCc--cHHHHHHHHHcCCeEEEEecCcCEEEECCHHHH
Confidence            33333333333 4455667889999999999999887   22356  788999999999999999999999999999999


Q ss_pred             hhhhcCCCcceecccccccc---cccCCCccccCChhHHHHHHHhh-hcCCChhHHhhhHHHHHHHHHHHHhhhC-----
Q 012199           86 KILLTGKDGMVSLNLFYTGQ---QVLGPTSLLQTNGEAHKRLRRLI-AEPLSVDGLKKYFQFINTLAIETLDQWS-----  156 (468)
Q Consensus        86 ~~i~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~g~~~~~~R~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~-----  156 (468)
                      ++++.++...|..++.....   ...+....+...++.|+++|+.+ .+.|+.+++..+.+.+.+.+.++++.+.     
T Consensus        84 ~~il~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~  163 (499)
T PLN03234         84 KELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQ  163 (499)
T ss_pred             HHHHHhCCccccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccC
Confidence            99998877667666432111   11232222445678999999975 6999999999999999999999988872     


Q ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHHHHhhhcc------CCCC--CC--hhhhhhcHHHHHHH
Q 012199          157 GKKVLVLEEASTFTLKVIGNMIMSLEPTG--EEQEKFRANFKLISSSFAS------LPLK--IP--GTAFYRGIKARDRM  224 (468)
Q Consensus       157 ~~~~d~~~~~~~~~~~~~~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~------~p~~--~p--~~~~~~~~~~~~~~  224 (468)
                      ++++|+.+.+..+++|++++++||.+.+.  .+..++.+.+......+..      +|.+  ++  ...+++..++.+.+
T Consensus       164 ~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~  243 (499)
T PLN03234        164 SGTVDLSELLLSFTNCVVCRQAFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKEL  243 (499)
T ss_pred             CCeEEHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHH
Confidence            36799999999999999999999987542  1223333333332221111      1111  00  01134566788888


Q ss_pred             HHHHHHHHHHHhcC---CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCh
Q 012199          225 YAMLDSIISKRRSG---ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENP  301 (468)
Q Consensus       225 ~~~~~~~i~~~~~~---~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p  301 (468)
                      .+++.++++++.+.   .....|+++.+++...    +......++++++.+++..+++||+|||+++++|++++|++||
T Consensus       244 ~~~~~~~i~~~~~~~~~~~~~~d~l~~l~~~~~----~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P  319 (499)
T PLN03234        244 DTYLQELLDETLDPNRPKQETESFIDLLMQIYK----DQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYP  319 (499)
T ss_pred             HHHHHHHHHHHHhhcccCCCcccHHHHHHHHhh----ccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCH
Confidence            88898888876542   1234588888876221    1111235899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhh
Q 012199          302 AVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSI  380 (468)
Q Consensus       302 ~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~  380 (468)
                      ++|+|+|+|++++.+   +.+.++++++.+|||++|||+|++|++|++++ +.|.+.+|++++||.|||||.|+++.+++
T Consensus       320 ~v~~kl~~Ei~~~~~---~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~  396 (499)
T PLN03234        320 EAMKKAQDEVRNVIG---DKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAV  396 (499)
T ss_pred             HHHHHHHHHHHHHhC---CCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhh
Confidence            999999999999875   34668999999999999999999999999997 47999999999999999999999999999


Q ss_pred             ccCCCCC-CCCCCCCCCCCCCCC-------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCC--CCC-
Q 012199          381 HHDPGIF-ANPEKFDPSRFDAPI-------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKD--DSV-  449 (468)
Q Consensus       381 ~~d~~~~-~~p~~f~P~R~l~~~-------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~--~~~-  449 (468)
                      ||||++| +||++||||||+++.       .+..++|||+|+|.|+|+++|+.|+++++|+|+++|++++.++.  ..+ 
T Consensus       397 ~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~  476 (499)
T PLN03234        397 SRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIK  476 (499)
T ss_pred             hCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCC
Confidence            9999999 899999999999732       24579999999999999999999999999999999999987752  112 


Q ss_pred             ---CcccccCCCCCcceeeee
Q 012199          450 ---QPTLVRMPRNKYPIAVEP  467 (468)
Q Consensus       450 ---~~~~~~~p~~~~~~~~~~  467 (468)
                         .++.+..|++++.+.+++
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~  497 (499)
T PLN03234        477 MDVMTGLAMHKKEHLVLAPTK  497 (499)
T ss_pred             cccccccccccCCCeEEEeec
Confidence               235556688888887765


No 13 
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=2.8e-73  Score=555.59  Aligned_cols=417  Identities=23%  Similarity=0.354  Sum_probs=331.5

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceec
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSL   98 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~   98 (468)
                      +..+..+.||||+++|++||++.+   . ...  +.++.+|+++||++|++++++.++|+++||+.+++++.++...|+.
T Consensus        30 ~~~~~~~~ppgp~~~Pl~G~l~~~---~-~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~  103 (516)
T PLN02183         30 RLRRRLPYPPGPKGLPIIGNMLMM---D-QLT--HRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSN  103 (516)
T ss_pred             hccCCCCCCcCCCCCCeeccHHhc---C-Ccc--hHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcC
Confidence            344455789999999999998766   2 334  6789999999999999999999999999999999999987766766


Q ss_pred             cccc-ccccccC--CCccccCChhHHHHHHHh-hhcCCChhHHhhhHHHHHHHHHHHHhhhC---CccccHHHHHHHHHH
Q 012199           99 NLFY-TGQQVLG--PTSLLQTNGEAHKRLRRL-IAEPLSVDGLKKYFQFINTLAIETLDQWS---GKKVLVLEEASTFTL  171 (468)
Q Consensus        99 ~~~~-~~~~~~g--~~~~~~~~g~~~~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~d~~~~~~~~~~  171 (468)
                      ++.. ......+  .++++..+|+.|+++|++ +.+.|+.+.++.+.+.+ +.+..+++++.   +.++|+.+.+..+++
T Consensus       104 r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~v~~~~~~~~~~~  182 (516)
T PLN02183        104 RPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSSNIGKPVNIGELIFTLTR  182 (516)
T ss_pred             CCcccchhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEeHHHHHHHHHH
Confidence            6432 1222222  356778899999999998 57999999998888754 56777887772   467999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHHHHhhhc------cCCCC--C-ChhhhhhcHHHHHHHHHHHHHHHHHHhc----C
Q 012199          172 KVIGNMIMSLEPTGEEQEKFRANFKLISSSFA------SLPLK--I-PGTAFYRGIKARDRMYAMLDSIISKRRS----G  238 (468)
Q Consensus       172 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~------~~p~~--~-p~~~~~~~~~~~~~~~~~~~~~i~~~~~----~  238 (468)
                      +++++++||.+.+ .....+.+.+..+...+.      .+|+.  + +...+++..++.+.+.+++.++++++.+    +
T Consensus       183 ~vi~~~~fG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  261 (516)
T PLN02183        183 NITYRAAFGSSSN-EGQDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQ  261 (516)
T ss_pred             HHHHhHhhcCccc-chHHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999998755 233345444444433221      12211  1 1112345556667777777777765432    1


Q ss_pred             ------CCcchhHHHHHHHHhhhhhhh-----hhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHH
Q 012199          239 ------ESIQQDFLESLIIKHSQAADE-----EANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKL  307 (468)
Q Consensus       239 ------~~~~~d~~~~ll~~~~~~~~~-----~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l  307 (468)
                            .....|+++.+++...++...     ......++++++.+++.++++||+|||+++++|++++|++||++|+|+
T Consensus       262 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl  341 (516)
T PLN02183        262 NADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRV  341 (516)
T ss_pred             ccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHH
Confidence                  012358999998743221100     011235899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCC
Q 012199          308 REEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIF  387 (468)
Q Consensus       308 r~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~  387 (468)
                      ++|++++.+   .++.++.+++.+|||++|||+||||++|++++..|++.+|++++||.|||||.|.++.+++||||++|
T Consensus       342 ~~Ei~~v~~---~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~  418 (516)
T PLN02183        342 QQELADVVG---LNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW  418 (516)
T ss_pred             HHHHHHHcC---CCCCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc
Confidence            999999975   24568999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCC------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCC
Q 012199          388 ANPEKFDPSRFDAPI------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKD  446 (468)
Q Consensus       388 ~~p~~f~P~R~l~~~------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~  446 (468)
                      +||++|+||||+++.      ....|+|||+|+|.|+|++||+.|+++++|+++++|+++..++.
T Consensus       419 ~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~  483 (516)
T PLN02183        419 EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGM  483 (516)
T ss_pred             CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCC
Confidence            999999999999632      23579999999999999999999999999999999999987653


No 14 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=3.8e-73  Score=554.71  Aligned_cols=440  Identities=20%  Similarity=0.321  Sum_probs=348.3

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceec
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSL   98 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~   98 (468)
                      .+++..+.||||.++|++||++++.    .++  +.++.+++++||++|++++++.++++++||+.+++++.++...|.+
T Consensus        28 ~~~~~~~~pPgp~~~P~iG~~~~~~----~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~  101 (517)
T PLN02687         28 SGKHKRPLPPGPRGWPVLGNLPQLG----PKP--HHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSN  101 (517)
T ss_pred             CCCCCCCCCccCCCCCccccHHhcC----Cch--hHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhc
Confidence            3345556789999999999998772    446  8899999999999999999999999999999999999887666777


Q ss_pred             cccccccccc---CCCccccCChhHHHHHHHhhh-cCCChhHHhhhHHHHHHHHHHHHhhhC----CccccHHHHHHHHH
Q 012199           99 NLFYTGQQVL---GPTSLLQTNGEAHKRLRRLIA-EPLSVDGLKKYFQFINTLAIETLDQWS----GKKVLVLEEASTFT  170 (468)
Q Consensus        99 ~~~~~~~~~~---g~~~~~~~~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~----~~~~d~~~~~~~~~  170 (468)
                      ++.......+   +.++++..+|+.|+++|+++. +.|+.+.++++.+.+.+.+..+++.+.    +.++|+.+.+..++
T Consensus       102 r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t  181 (517)
T PLN02687        102 RPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCT  181 (517)
T ss_pred             CCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHH
Confidence            6442211112   234566778999999999998 899999999999999999988888773    36799999999999


Q ss_pred             HHHHHHHHcCCCCC----hhHHHHHHHHHHHHHhhhc------cCCC--CCCh-hhhhhcHHHHHHHHHHHHHHHHHHhc
Q 012199          171 LKVIGNMIMSLEPT----GEEQEKFRANFKLISSSFA------SLPL--KIPG-TAFYRGIKARDRMYAMLDSIISKRRS  237 (468)
Q Consensus       171 ~~~~~~~~fG~~~~----~~~~~~~~~~~~~~~~~~~------~~p~--~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~  237 (468)
                      +|+++.++||.+..    +.....+.+.+..+.....      .+|.  |++. ....+..++.+.+.+++.++++++++
T Consensus       182 ~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~  261 (517)
T PLN02687        182 TNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKA  261 (517)
T ss_pred             HHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997642    1223344444444433211      1221  1111 11234555677788888888887765


Q ss_pred             CC----CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 012199          238 GE----SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHRE  313 (468)
Q Consensus       238 ~~----~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~  313 (468)
                      ..    ....|+++.+++....+. ...++..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++.
T Consensus       262 ~~~~~~~~~~d~l~~ll~~~~~~~-~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~  340 (517)
T PLN02687        262 AGQTGSEEHKDLLSTLLALKREQQ-ADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDA  340 (517)
T ss_pred             hccccCcccccHHHHHHHhhcccc-ccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            32    234689999997321100 0112346999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCC
Q 012199          314 IQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEK  392 (468)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~  392 (468)
                      +.+   .++.++.+++.+||||+|||+||||++|+++. ++|.+.+|++++||.|||||.|.++.+++||||++|+||++
T Consensus       341 ~~~---~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~  417 (517)
T PLN02687        341 VVG---RDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLE  417 (517)
T ss_pred             HcC---CCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCccc
Confidence            875   35678999999999999999999999999996 78999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC---------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC--CC----CcccccCC
Q 012199          393 FDPSRFDAPI---------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD--SV----QPTLVRMP  457 (468)
Q Consensus       393 f~P~R~l~~~---------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~--~~----~~~~~~~p  457 (468)
                      |+||||++..         .+..++|||+|+|.|+|++||+.|+++++++|+++|++++.++..  .+    ....+..|
T Consensus       418 F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~  497 (517)
T PLN02687        418 FRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQR  497 (517)
T ss_pred             CCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeec
Confidence            9999998631         235799999999999999999999999999999999999876532  22    12344455


Q ss_pred             CCCcceeeeeC
Q 012199          458 RNKYPIAVEPL  468 (468)
Q Consensus       458 ~~~~~~~~~~~  468 (468)
                      ..+++++++|+
T Consensus       498 ~~~~~~~~~~R  508 (517)
T PLN02687        498 AVPLMVHPRPR  508 (517)
T ss_pred             CCCeEEeeccC
Confidence            56777777653


No 15 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=8.6e-75  Score=557.97  Aligned_cols=430  Identities=31%  Similarity=0.527  Sum_probs=346.3

Q ss_pred             CCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcc--eeccc
Q 012199           23 EMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGM--VSLNL  100 (468)
Q Consensus        23 ~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~--~~~~~  100 (468)
                      ....||||.++|++|++..+.... .+.  ..++.++..+||++|+.+++|.++++++||+.+++|+.++...  +...+
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~  109 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPL-EEI--LDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDY  109 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcch-hHH--HHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhH
Confidence            567899999999999999985432 233  7888999999999999999999999999999999999643332  23334


Q ss_pred             ccccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhC----CccccHHHHHHHHHHHHHHH
Q 012199          101 FYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWS----GKKVLVLEEASTFTLKVIGN  176 (468)
Q Consensus       101 ~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~----~~~~d~~~~~~~~~~~~~~~  176 (468)
                      ...+.+++| +|+++++|+.|+++||++.++|+.+.++.+...+.+....++..+.    +..+|+.+.++++++|+++.
T Consensus       110 ~~~~~~~lG-~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~  188 (497)
T KOG0157|consen  110 PESLKPWLG-DGLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICK  188 (497)
T ss_pred             HHHHHHHhc-CccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHH
Confidence            457788999 5899999999999999999999999999988888877666554432    23399999999999999999


Q ss_pred             HHcCCCC---ChhHHHHHHHHHHHHHhhhccCCCCCC-hh-------hhhhcHHHHHHHHHHHHHHHHHHhcC----C--
Q 012199          177 MIMSLEP---TGEEQEKFRANFKLISSSFASLPLKIP-GT-------AFYRGIKARDRMYAMLDSIISKRRSG----E--  239 (468)
Q Consensus       177 ~~fG~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~p-~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~----~--  239 (468)
                      +++|...   ......++...+..+...+ ..+...| ..       ..++..++.+.+.+.++++|+++++.    .  
T Consensus       189 ~~~G~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~  267 (497)
T KOG0157|consen  189 TAMGPESLDAEGPELFEYVQAFDDLTELI-SKRINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSG  267 (497)
T ss_pred             HhcCCccccccCCcccHHHHHHHHHHHHH-HHHHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999322   1122333334444332221 1122222 11       23455678889999999999877742    1  


Q ss_pred             --CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Q 012199          240 --SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQAN  317 (468)
Q Consensus       240 --~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~  317 (468)
                        ....|+++.+..        +.+ ..++++++.+++.+|++||+|||+++++|+++.|+.||++|+|+++|+.++.++
T Consensus       268 ~~~~~~d~L~~~~~--------~~~-~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~  338 (497)
T KOG0157|consen  268 EEKKRLDFLDTLLL--------EED-KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGN  338 (497)
T ss_pred             ccchhhhHHHHHHH--------hcc-CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCC
Confidence              234577775332        111 579999999999999999999999999999999999999999999999999762


Q ss_pred             hCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceec-CeEecCCCEEeecchhhccCCCCCC-CCCCCCC
Q 012199          318 RNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIE-GYKIVKGWSINLDVVSIHHDPGIFA-NPEKFDP  395 (468)
Q Consensus       318 ~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~-g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~P  395 (468)
                      .  +...+....++|+||++||+||||+|||+|.+.|.+.+|++++ ||.||||+.|.++++++|||+.+|+ ||++|||
T Consensus       339 ~--~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~P  416 (497)
T KOG0157|consen  339 R--DDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDP  416 (497)
T ss_pred             C--CCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCc
Confidence            2  1212333333799999999999999999999999999999995 8999999999999999999999996 9999999


Q ss_pred             CCCCCC-----CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCC-CCCCcccccCCCCCcceeeeeC
Q 012199          396 SRFDAP-----IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKD-DSVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       396 ~R~l~~-----~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~  468 (468)
                      |||+++     .++++|+|||+|+|.|+|++||++|+|+++++++++|+|++..+. ....+.++.+|.++++|+++|+
T Consensus       417 eRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r  495 (497)
T KOG0157|consen  417 ERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDKPKPVPELTLRPKNGLKVKLRPR  495 (497)
T ss_pred             cccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCCceeeeEEEEEecCCeEEEEEeC
Confidence            999963     236899999999999999999999999999999999999998886 4455688999999999999875


No 16 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=4.4e-73  Score=554.55  Aligned_cols=441  Identities=22%  Similarity=0.354  Sum_probs=345.0

Q ss_pred             cCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceec
Q 012199           19 ASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSL   98 (468)
Q Consensus        19 ~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~   98 (468)
                      ...+..+.||||+++|++||++.+.. ...++  +.++.+++++||++|++++++.++++++||+++++++.++...|+.
T Consensus        29 ~~~~~~~lpPgp~~~pl~G~l~~~~~-~~~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~  105 (519)
T PLN00168         29 GGKKGRRLPPGPPAVPLLGSLVWLTN-SSADV--EPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALAD  105 (519)
T ss_pred             CCCCCCCCCcCCCCCcccccHHhhcc-ccccH--HHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCcccc
Confidence            34455667899999999999876521 11234  7889999999999999999999999999999999999887777777


Q ss_pred             ccccccccccCC-Ccccc--CChhHHHHHHH-hhhcCCChhHHhhhHHHHHHHHHHHHhhhCC-----ccccHHHHHHHH
Q 012199           99 NLFYTGQQVLGP-TSLLQ--TNGEAHKRLRR-LIAEPLSVDGLKKYFQFINTLAIETLDQWSG-----KKVLVLEEASTF  169 (468)
Q Consensus        99 ~~~~~~~~~~g~-~~~~~--~~g~~~~~~R~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----~~~d~~~~~~~~  169 (468)
                      ++......++|. .+++.  .+|+.|+++|| ++.++|+.+.++++.+.+.+.+..+++++..     ..+|+.+.+..+
T Consensus       106 rp~~~~~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~  185 (519)
T PLN00168        106 RPAVASSRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYA  185 (519)
T ss_pred             CCcccchhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence            654223334442 23333  68999999886 7899999999999999999988888887732     457899999999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHHHHhh-------hccCCCCC---ChhhhhhcHHHHHHHHHHHHHHHHHHhcCC
Q 012199          170 TLKVIGNMIMSLEPTGEEQEKFRANFKLISSS-------FASLPLKI---PGTAFYRGIKARDRMYAMLDSIISKRRSGE  239 (468)
Q Consensus       170 ~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~---p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  239 (468)
                      +.++++.++||.+.+......+......+...       ...+|.+.   ....+.+..++.+.+.+++.++++++++..
T Consensus       186 ~~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  265 (519)
T PLN00168        186 MFCLLVLMCFGERLDEPAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARREYK  265 (519)
T ss_pred             HHHHHHHHHcCCCcChhhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999876532222332222222110       11122211   111233445667788888888887654321


Q ss_pred             ------C--------cchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHH
Q 012199          240 ------S--------IQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQ  305 (468)
Q Consensus       240 ------~--------~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~  305 (468)
                            .        ...|+++.+++...    .++++..++++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~----~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~  341 (519)
T PLN00168        266 NHLGQGGEPPKKETTFEHSYVDTLLDIRL----PEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQS  341 (519)
T ss_pred             hhccccCccccccccccccHHHHHHhhhc----cccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHH
Confidence                  0        13488999986221    01222469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhccCC
Q 012199          306 KLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDP  384 (468)
Q Consensus       306 ~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~  384 (468)
                      |+++|++.+.+.  ..+.++.+++.+||||+|||+||||++|+++. ++|.+.+|++++||.|||||.|.++.+++||||
T Consensus       342 kl~~Ei~~v~~~--~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~  419 (519)
T PLN00168        342 KLHDEIKAKTGD--DQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDE  419 (519)
T ss_pred             HHHHHHHHHhCC--CCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCc
Confidence            999999998751  23568999999999999999999999999986 589999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC----------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CC--Cc
Q 012199          385 GIFANPEKFDPSRFDAPI----------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SV--QP  451 (468)
Q Consensus       385 ~~~~~p~~f~P~R~l~~~----------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~--~~  451 (468)
                      ++|+||++|+||||++..          .+..++|||+|+|.|+|++||+.|+++++++|+++|+|++.+++. ..  ..
T Consensus       420 ~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~  499 (519)
T PLN00168        420 REWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKR  499 (519)
T ss_pred             cccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhc
Confidence            999999999999998631          235799999999999999999999999999999999999876532 21  12


Q ss_pred             ccccCCCCCcceeeeeC
Q 012199          452 TLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       452 ~~~~~p~~~~~~~~~~~  468 (468)
                      ..+..|.++++++++++
T Consensus       500 ~~~~~~~~~~~~~~~~R  516 (519)
T PLN00168        500 EFTTVMAKPLRARLVPR  516 (519)
T ss_pred             eeEEeecCCcEEEEEec
Confidence            35667788899998774


No 17 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=1.3e-72  Score=547.57  Aligned_cols=440  Identities=22%  Similarity=0.350  Sum_probs=349.8

Q ss_pred             HHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCc
Q 012199           15 MRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDG   94 (468)
Q Consensus        15 ~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~   94 (468)
                      .++....+..+.||||+++|++||++.+   . .++  +.++.+++++||+||++++++.++|+++||+.+++++.+...
T Consensus        21 ~~~~~~~~~~~~pPgp~~~Pl~G~l~~~---~-~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~   94 (504)
T PLN00110         21 IRSLLPKPSRKLPPGPRGWPLLGALPLL---G-NMP--HVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDI   94 (504)
T ss_pred             HHHHhhcccCCCcccCCCCCeeechhhc---C-Cch--HHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcch
Confidence            3444556666789999999999998766   2 345  889999999999999999999999999999999999987776


Q ss_pred             ceecccccc-c-ccccC-CCccccCChhHHHHHHHhhhc-CCChhHHhhhHHHHHHHHHHHHhhh-----CCccccHHHH
Q 012199           95 MVSLNLFYT-G-QQVLG-PTSLLQTNGEAHKRLRRLIAE-PLSVDGLKKYFQFINTLAIETLDQW-----SGKKVLVLEE  165 (468)
Q Consensus        95 ~~~~~~~~~-~-~~~~g-~~~~~~~~g~~~~~~R~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~-----~~~~~d~~~~  165 (468)
                      .|.+++... . ....+ ++++++.+|+.|+++|+.+.+ .|+.+.++.+.+.+.+.+..+++.+     .++++|+.+.
T Consensus        95 ~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~  174 (504)
T PLN00110         95 NFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEM  174 (504)
T ss_pred             hhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHH
Confidence            677764321 1 12233 356777889999999999984 7999999999998888777666654     2467899999


Q ss_pred             HHHHHHHHHHHHHcCCCC-C--hhHHHHHHHHHHHHHhhhc------cCCC--CCChh-hhhhcHHHHHHHHHHHHHHHH
Q 012199          166 ASTFTLKVIGNMIMSLEP-T--GEEQEKFRANFKLISSSFA------SLPL--KIPGT-AFYRGIKARDRMYAMLDSIIS  233 (468)
Q Consensus       166 ~~~~~~~~~~~~~fG~~~-~--~~~~~~~~~~~~~~~~~~~------~~p~--~~p~~-~~~~~~~~~~~~~~~~~~~i~  233 (468)
                      +..+++|++++++||.+. .  +.+..++.+.+..+.....      .+|.  |++.. ..++..+.++.+.+++.+.++
T Consensus       175 ~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~  254 (504)
T PLN00110        175 LTFSMANMIGQVILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKLLTRMIE  254 (504)
T ss_pred             HHHHHHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999764 1  1223344444444332211      1221  11111 123344556777788888887


Q ss_pred             HHhcCC---CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHH
Q 012199          234 KRRSGE---SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREE  310 (468)
Q Consensus       234 ~~~~~~---~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~E  310 (468)
                      ++++..   ....|+++.+++..     +..++..++++++.++++.+++||+|||+++++|++++|++||++|+|+++|
T Consensus       255 ~~~~~~~~~~~~~d~l~~ll~~~-----~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~E  329 (504)
T PLN00110        255 EHTASAHERKGNPDFLDVVMANQ-----ENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEE  329 (504)
T ss_pred             HHHhhccccccCCChhhHHhhcc-----cccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            665431   22358999998621     1122346999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhccCCCCCCC
Q 012199          311 HREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFAN  389 (468)
Q Consensus       311 i~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~  389 (468)
                      ++++.+   .++.++++++++|||++|||+||||++|+++. ++|.+.+|++++||.|||||.|+++.+++||||++|+|
T Consensus       330 i~~~~~---~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~d  406 (504)
T PLN00110        330 MDQVIG---RNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWEN  406 (504)
T ss_pred             HHHHhC---CCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCC
Confidence            999875   34668999999999999999999999999996 78999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCC--------CccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CC--CcccccCCC
Q 012199          390 PEKFDPSRFDAPIK--------TFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SV--QPTLVRMPR  458 (468)
Q Consensus       390 p~~f~P~R~l~~~~--------~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~--~~~~~~~p~  458 (468)
                      |++|+||||+++..        ...++|||+|+|.|+|++||+.|+++++++|+++|++++.+++. ..  ...++..|+
T Consensus       407 P~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~  486 (504)
T PLN00110        407 PEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKA  486 (504)
T ss_pred             cccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccC
Confidence            99999999986321        24799999999999999999999999999999999999876643 11  235677899


Q ss_pred             CCcceeeeeC
Q 012199          459 NKYPIAVEPL  468 (468)
Q Consensus       459 ~~~~~~~~~~  468 (468)
                      .+++++++++
T Consensus       487 ~~~~~~~~~r  496 (504)
T PLN00110        487 VPLSAMVTPR  496 (504)
T ss_pred             CCceEeeccC
Confidence            9999999764


No 18 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=3e-72  Score=548.55  Aligned_cols=446  Identities=20%  Similarity=0.293  Sum_probs=335.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhh
Q 012199            7 FLLSFFFLMRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASK   86 (468)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~   86 (468)
                      +.++++.++......++...||||+++|++|+++++   .....  +..+.+++++||+||+++++++++|+++||+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~pPgp~~~p~~g~l~~~---~~~~~--~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~   86 (503)
T PLN02394         12 FVAIVLALLVSKLRGKKLKLPPGPAAVPIFGNWLQV---GDDLN--HRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAK   86 (503)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCcCCCCCCeeeeHHhc---CCCch--hHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHH
Confidence            333333333444566778899999999999999877   22234  7789999999999999999889999999999999


Q ss_pred             hhhcCCCcceecccc-cccccccC--CCccccCChhHHHHHHHhhh-cCCChhHHhhhHHHHHHHHHHHHhhhC------
Q 012199           87 ILLTGKDGMVSLNLF-YTGQQVLG--PTSLLQTNGEAHKRLRRLIA-EPLSVDGLKKYFQFINTLAIETLDQWS------  156 (468)
Q Consensus        87 ~i~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~------  156 (468)
                      +++.++...|.++.. .....+.|  .++++..+|+.|+++|+.+. +.|+.+.++.+.+.+.+.+.++++++.      
T Consensus        87 ~il~~~~~~~~~r~~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~  166 (503)
T PLN02394         87 EVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAA  166 (503)
T ss_pred             HHHHhCCccccCCCCcchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence            999876655665532 22233333  24567788999999999996 999999999999999998888887763      


Q ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHHHHhhhc--------cCCCCCCh-hhhh-hcHHHHHH
Q 012199          157 GKKVLVLEEASTFTLKVIGNMIMSLEPTGEE---QEKFRANFKLISSSFA--------SLPLKIPG-TAFY-RGIKARDR  223 (468)
Q Consensus       157 ~~~~d~~~~~~~~~~~~~~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~--------~~p~~~p~-~~~~-~~~~~~~~  223 (468)
                      ++.+++.+.+..+++|++++++||.+.+...   ..++............        .+|.+.+. ..+. ........
T Consensus       167 ~~~v~~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (503)
T PLN02394        167 TEGVVIRRRLQLMMYNIMYRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKER  246 (503)
T ss_pred             CCcEecHHHHHHHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHHHHH
Confidence            2458999999999999999999998754211   1111111111111111        11111111 0111 11111121


Q ss_pred             HHH-HHHHHHHHHhc-------CCCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 012199          224 MYA-MLDSIISKRRS-------GESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIK  295 (468)
Q Consensus       224 ~~~-~~~~~i~~~~~-------~~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~  295 (468)
                      ... +...+++++++       +.+...|+++.+++..        ....++++++..++..+++||+|||+++++|+++
T Consensus       247 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~~--------~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~  318 (503)
T PLN02394        247 RLALFKDYFVDERKKLMSAKGMDKEGLKCAIDHILEAQ--------KKGEINEDNVLYIVENINVAAIETTLWSIEWGIA  318 (503)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHhcc--------ccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence            122 22334444332       1123468999998721        1235899999999999999999999999999999


Q ss_pred             HHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEe
Q 012199          296 FIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSIN  374 (468)
Q Consensus       296 ~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~  374 (468)
                      +|++||++|+|||+|++++.+   .++.++.+++.+||||+|||+|+||++|++++ .+|.+.+|++++||.|||||.|.
T Consensus       319 ~L~~~P~vq~kl~~Ei~~v~~---~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~  395 (503)
T PLN02394        319 ELVNHPEIQKKLRDELDTVLG---PGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKIL  395 (503)
T ss_pred             HHHcCHHHHHHHHHHHHHHhC---CCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEE
Confidence            999999999999999999975   34568999999999999999999999999997 47999999999999999999999


Q ss_pred             ecchhhccCCCCCCCCCCCCCCCCCCCC-------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC
Q 012199          375 LDVVSIHHDPGIFANPEKFDPSRFDAPI-------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD  447 (468)
Q Consensus       375 ~~~~~~~~d~~~~~~p~~f~P~R~l~~~-------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~  447 (468)
                      ++.+++||||++|+||++|+||||++..       ....++|||.|+|.|+|++||++|+++++|.++++|++++.++..
T Consensus       396 ~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~  475 (503)
T PLN02394        396 VNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS  475 (503)
T ss_pred             EchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC
Confidence            9999999999999999999999998632       245799999999999999999999999999999999999876653


Q ss_pred             CCC----cc-cccCCCCCcceeeeeC
Q 012199          448 SVQ----PT-LVRMPRNKYPIAVEPL  468 (468)
Q Consensus       448 ~~~----~~-~~~~p~~~~~~~~~~~  468 (468)
                      ...    ++ .+...+.++.++++|+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~r  501 (503)
T PLN02394        476 KIDVSEKGGQFSLHIAKHSTVVFKPR  501 (503)
T ss_pred             cCccccccCceeeccCCCceEEeecC
Confidence            122    22 3442444788888774


No 19 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=9.7e-72  Score=545.93  Aligned_cols=441  Identities=19%  Similarity=0.273  Sum_probs=346.7

Q ss_pred             HHHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCC
Q 012199           14 LMRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKD   93 (468)
Q Consensus        14 ~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~   93 (468)
                      ++.+++..++.+.||||+++|++||++++   . .++  +.++.+++++||++|++++++.++++++||+.+++++.++.
T Consensus        21 ~~~~~~~~~~~~~ppgp~~~pl~G~~~~~---~-~~~--~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~   94 (514)
T PLN03112         21 RWLNASMRKSLRLPPGPPRWPIVGNLLQL---G-PLP--HRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQD   94 (514)
T ss_pred             HHccccccCCCCCccCCCCCCeeeeHHhc---C-Cch--HHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCC
Confidence            33445666677789999999999999877   2 445  88899999999999999999999999999999999998777


Q ss_pred             cceecccccc--cccccCC-CccccCChhHHHHHHHhh-hcCCChhHHhhhHHHHHHHHHHHHhhh-----CCccccHHH
Q 012199           94 GMVSLNLFYT--GQQVLGP-TSLLQTNGEAHKRLRRLI-AEPLSVDGLKKYFQFINTLAIETLDQW-----SGKKVLVLE  164 (468)
Q Consensus        94 ~~~~~~~~~~--~~~~~g~-~~~~~~~g~~~~~~R~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~-----~~~~~d~~~  164 (468)
                      ..|+++....  ....+|. .+++..+|+.|+++|+++ .+.|+.++++.+.+.+.+.+..+++.+     .+.++|+.+
T Consensus        95 ~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~  174 (514)
T PLN03112         95 DVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLRE  174 (514)
T ss_pred             cccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHH
Confidence            6777664421  1223342 345667899999999996 568999999999999988888877654     236799999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHHHHhhhc------cCCCC--C-ChhhhhhcHHHHHHHHHHHH
Q 012199          165 EASTFTLKVIGNMIMSLEPTG------EEQEKFRANFKLISSSFA------SLPLK--I-PGTAFYRGIKARDRMYAMLD  229 (468)
Q Consensus       165 ~~~~~~~~~~~~~~fG~~~~~------~~~~~~~~~~~~~~~~~~------~~p~~--~-p~~~~~~~~~~~~~~~~~~~  229 (468)
                      .+..+++++++.++||.+..+      .....+.+.+..+.....      .+|.+  + +....++..++.+.+.+++.
T Consensus       175 ~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T PLN03112        175 VLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHD  254 (514)
T ss_pred             HHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999986421      122334443333322211      12211  1 11123445566777777888


Q ss_pred             HHHHHHhcC------CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHH
Q 012199          230 SIISKRRSG------ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAV  303 (468)
Q Consensus       230 ~~i~~~~~~------~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~  303 (468)
                      +.++++++.      .....|+++.+++...     +.....++++++.+++..+++||+|||+++++|++++|++||++
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~-----~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~v  329 (514)
T PLN03112        255 KIIDEHRRARSGKLPGGKDMDFVDVLLSLPG-----ENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRV  329 (514)
T ss_pred             HHHHHHHHhhcccccCCccchHHHHHHHhhc-----cccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHH
Confidence            888765432      1234589999987211     11223589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhcc
Q 012199          304 LQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIHH  382 (468)
Q Consensus       304 ~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~  382 (468)
                      |+|+++|++++.+   .++.++.+++++|||++|||+||+|++|++++ ++|.+.+|++++||.|||||.|.++.+++||
T Consensus       330 q~kl~~Ei~~~~~---~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~  406 (514)
T PLN03112        330 LRKIQEELDSVVG---RNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGR  406 (514)
T ss_pred             HHHHHHHHHHhcC---CCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhC
Confidence            9999999999875   34568999999999999999999999999996 6899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCC---------CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC--CCC-
Q 012199          383 DPGIFANPEKFDPSRFDAP---------IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD--SVQ-  450 (468)
Q Consensus       383 d~~~~~~p~~f~P~R~l~~---------~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~--~~~-  450 (468)
                      ||++|+||++|+||||...         .....++|||.|+|.|+|++||+.|++++++.|+++|++++.++..  .+. 
T Consensus       407 d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~  486 (514)
T PLN03112        407 NTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDT  486 (514)
T ss_pred             CcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCC
Confidence            9999999999999997542         1235799999999999999999999999999999999999875431  122 


Q ss_pred             ---cccccCCCCCcceeeeeC
Q 012199          451 ---PTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       451 ---~~~~~~p~~~~~~~~~~~  468 (468)
                         +.++..+.+++.+++.|+
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~r  507 (514)
T PLN03112        487 QEVYGMTMPKAKPLRAVATPR  507 (514)
T ss_pred             ccccCcccccCCCeEEEeecC
Confidence               245556777899998864


No 20 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=3.6e-71  Score=539.38  Aligned_cols=430  Identities=22%  Similarity=0.368  Sum_probs=333.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhh
Q 012199            7 FLLSFFFLMRSMASPKEMEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASK   86 (468)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~   86 (468)
                      +++++.++++.....+..+.||||+++|++||++++.   ..++  +.++.+|+++||++|++++++.++++++||+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~ppgp~~~p~~G~l~~l~---~~~~--~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~   85 (502)
T PLN02966         11 LAAVLLFFLYQKPKTKRYKLPPGPSPLPVIGNLLQLQ---KLNP--QRFFAGWAKKYGPILSYRIGSRTMVVISSAELAK   85 (502)
T ss_pred             HHHHHHHHHHhccccCCCCCCcCCCCCCeeccHHhcC---CCCh--hHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHH
Confidence            3444444455555666667899999999999998872   2356  8899999999999999999999999999999999


Q ss_pred             hhhcCCCcceecccccccccc--cCCCc-cccCChhHHHHHHHh-hhcCCChhHHhhhHHHHHHHHHHHHhhhC-----C
Q 012199           87 ILLTGKDGMVSLNLFYTGQQV--LGPTS-LLQTNGEAHKRLRRL-IAEPLSVDGLKKYFQFINTLAIETLDQWS-----G  157 (468)
Q Consensus        87 ~i~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~g~~~~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-----~  157 (468)
                      +++.+....|.+++.......  .|... .++.+|+.|+++|++ +.+.|+.+.++.+.+.+.+.+.++++.+.     +
T Consensus        86 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~  165 (502)
T PLN02966         86 ELLKTQDVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKS  165 (502)
T ss_pred             HHHHhCcccccCCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999876655655533222222  23222 245679999999998 78999999999999999999999988873     2


Q ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHHHHhhhc------cCCCC--CC-hhhh-hhcHHHHHHHH
Q 012199          158 KKVLVLEEASTFTLKVIGNMIMSLEPTG--EEQEKFRANFKLISSSFA------SLPLK--IP-GTAF-YRGIKARDRMY  225 (468)
Q Consensus       158 ~~~d~~~~~~~~~~~~~~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~------~~p~~--~p-~~~~-~~~~~~~~~~~  225 (468)
                      +.+|+.+.+..+++|+++.++||.+.+.  ....++.+.+........      .+|..  ++ ...+ .....+.+...
T Consensus       166 ~~vdl~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  245 (502)
T PLN02966        166 EVVDISELMLTFTNSVVCRQAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQD  245 (502)
T ss_pred             CceeHHHHHHHHHHHHHHHHHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHH
Confidence            5799999999999999999999987541  222233333322221111      12210  11 0001 11223445566


Q ss_pred             HHHHHHHHHHhcC---CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChH
Q 012199          226 AMLDSIISKRRSG---ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPA  302 (468)
Q Consensus       226 ~~~~~~i~~~~~~---~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~  302 (468)
                      +++.+.+++....   .....|+++.+++...    ++..+..++++++.+++.++++||+|||+++++|++++|++||+
T Consensus       246 ~~~~~~i~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~  321 (502)
T PLN02966        246 TYIQEVVNETLDPKRVKPETESMIDLLMEIYK----EQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQ  321 (502)
T ss_pred             HHHHHHHHHHHhccccccccccHHHHHHHHHh----ccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHH
Confidence            6666666554321   1224588888886221    11112458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcc-cccccCccceecCeEecCCCEEeecchhhc
Q 012199          303 VLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPW-FSRKAAQDFEIEGYKIVKGWSINLDVVSIH  381 (468)
Q Consensus       303 ~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~-~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~  381 (468)
                      +|+|+++|++++.+.. +++.++++++++||||+|||+|+||++|++++ ++|.+.+|++++||.|||||.|.++.+++|
T Consensus       322 ~q~kl~~Ei~~v~~~~-~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~  400 (502)
T PLN02966        322 VLKKAQAEVREYMKEK-GSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVS  400 (502)
T ss_pred             HHHHHHHHHHHHhccc-CCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEeccccc
Confidence            9999999999997521 23468999999999999999999999999997 689999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCCCCCCCCCC-----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCC
Q 012199          382 HDPGIF-ANPEKFDPSRFDAPI-----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKD  446 (468)
Q Consensus       382 ~d~~~~-~~p~~f~P~R~l~~~-----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~  446 (468)
                      |||++| +||++|+||||++..     .+..++|||+|+|.|+|++||+.|+++++|.|+++|+|++.++.
T Consensus       401 rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~  471 (502)
T PLN02966        401 RDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM  471 (502)
T ss_pred             CCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence            999999 999999999998732     35689999999999999999999999999999999999987664


No 21 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=3.9e-71  Score=536.19  Aligned_cols=429  Identities=19%  Similarity=0.265  Sum_probs=327.0

Q ss_pred             CCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCcee---eecCCceEEEEcChhhhhhhhcCCCcceeccc
Q 012199           24 MEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFK---TYTLGRFSVIMTGREASKILLTGKDGMVSLNL  100 (468)
Q Consensus        24 ~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~---~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~  100 (468)
                      +.+.|||+++|++||+..+...   ...++.++.+..++||..+.   .++++.++++|+||+.+++|+.++...|.++.
T Consensus        30 ~~~~p~p~~~pl~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~  106 (500)
T PLN02169         30 PHGQPILKNWPFLGMLPGMLHQ---IPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGP  106 (500)
T ss_pred             cCCCCCCCCCCcccchHHHHHc---cCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcH
Confidence            3478899999999999777432   22135556666666887655   57788999999999999999987665566553


Q ss_pred             c-cccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhh--HHHHHHHHHHHHhhh-----CCccccHHHHHHHHHHH
Q 012199          101 F-YTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKY--FQFINTLAIETLDQW-----SGKKVLVLEEASTFTLK  172 (468)
Q Consensus       101 ~-~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~-----~~~~~d~~~~~~~~~~~  172 (468)
                      . .....++| +++++++|+.|+++|++++++|+...+..+  .+.+.+.+..+++.+     .+.++|+.+.+.++++|
T Consensus       107 ~~~~~~~~~g-~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~d  185 (500)
T PLN02169        107 EFKKIFDVLG-EGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFD  185 (500)
T ss_pred             HHHHHHHhhc-CcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHH
Confidence            2 23344556 899999999999999999999999876542  244444444444333     23679999999999999


Q ss_pred             HHHHHHcCCCCChhH----HHHHHHHHHHHHhhh---ccCCC-------CCChhhhhhcHHHHHHHHHHHHHHHHHHhcC
Q 012199          173 VIGNMIMSLEPTGEE----QEKFRANFKLISSSF---ASLPL-------KIPGTAFYRGIKARDRMYAMLDSIISKRRSG  238 (468)
Q Consensus       173 ~~~~~~fG~~~~~~~----~~~~~~~~~~~~~~~---~~~p~-------~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~  238 (468)
                      ++++++||.+.+...    ...+...+..+...+   ...|.       +++....++..++.+.+.+++.++|+++++.
T Consensus       186 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~  265 (500)
T PLN02169        186 TSSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKE  265 (500)
T ss_pred             HHHhheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998643111    122332222221111   11121       1222223455677888889999988877542


Q ss_pred             C-------CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHH
Q 012199          239 E-------SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       239 ~-------~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      .       +..+|+++.+++...   ........++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+
T Consensus       266 ~~~~~~~~~~~~d~l~~ll~~~~---~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei  342 (500)
T PLN02169        266 EISRAETEPYSKDALTYYMNVDT---SKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEI  342 (500)
T ss_pred             hhccccccCCCcCHHHHHHhccc---cccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            1       113588988886211   000011247889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccce-ecCeEecCCCEEeecchhhccCCCCC-CC
Q 012199          312 REIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFE-IEGYKIVKGWSINLDVVSIHHDPGIF-AN  389 (468)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~-i~g~~ip~g~~v~~~~~~~~~d~~~~-~~  389 (468)
                      +++         ++.+++.+||||+|||+||||++|++|...|.+.+|.+ ++||.|||||.|+++.|++||||++| +|
T Consensus       343 ~~v---------~~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~d  413 (500)
T PLN02169        343 NTK---------FDNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGED  413 (500)
T ss_pred             Hhh---------CCHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCC
Confidence            875         36789999999999999999999999988888777655 59999999999999999999999999 89


Q ss_pred             CCCCCCCCCCCC------CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CCCcccccCCCCCcc
Q 012199          390 PEKFDPSRFDAP------IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SVQPTLVRMPRNKYP  462 (468)
Q Consensus       390 p~~f~P~R~l~~------~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~  462 (468)
                      |++|+||||++.      ..+..|+|||+|+|.|+|++||+.|+++++++|+++|++++.++.. ......+.+|+++++
T Consensus       414 P~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~  493 (500)
T PLN02169        414 ALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLK  493 (500)
T ss_pred             hhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCcccccceEEecCCCEE
Confidence            999999999863      1256899999999999999999999999999999999999876532 223456788999999


Q ss_pred             eeeeeC
Q 012199          463 IAVEPL  468 (468)
Q Consensus       463 ~~~~~~  468 (468)
                      ++++++
T Consensus       494 l~l~~~  499 (500)
T PLN02169        494 VTVTKK  499 (500)
T ss_pred             EEEEeC
Confidence            999874


No 22 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=9.8e-71  Score=538.61  Aligned_cols=429  Identities=20%  Similarity=0.278  Sum_probs=327.0

Q ss_pred             CCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhh---CCceeeecCCceEEEEcChhhhhhhhcCCCcceecccc-
Q 012199           26 GIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRY---GKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLF-  101 (468)
Q Consensus        26 ~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-  101 (468)
                      .+|||+++|++||++.++.     .  +..+.+|.++|   |++|.+++++.+.++++||+.+++++.++...+..... 
T Consensus        31 ~~pgp~~~p~~G~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~  103 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQLK-----N--YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVY  103 (516)
T ss_pred             ccCCCCCCCeecchHHHHh-----c--cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhH
Confidence            4789999999999877632     1  23355666666   89999999999999999999999999865434544322 


Q ss_pred             -cccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHH-HHHHHHHHhhh-----CCccccHHHHHHHHHHHHH
Q 012199          102 -YTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFI-NTLAIETLDQW-----SGKKVLVLEEASTFTLKVI  174 (468)
Q Consensus       102 -~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~-----~~~~~d~~~~~~~~~~~~~  174 (468)
                       .....+.| +++++.+|+.|+++|+++++.|+.++++.+.+.+ .+.+..+.+.+     .+.++|+.+.+..+++|++
T Consensus       104 ~~~~~~~~g-~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi  182 (516)
T PLN03195        104 HSYMEVLLG-DGIFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSI  182 (516)
T ss_pred             HHHHHHHhc-CeeeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHH
Confidence             12223445 6788889999999999999999999999988876 44444443322     2467999999999999999


Q ss_pred             HHHHcCCCCChh----HHHHHHHHHHHHHhhh--cc-CCCC-----CChhhhhhcHHHHHHHHHHHHHHHHHHhcC----
Q 012199          175 GNMIMSLEPTGE----EQEKFRANFKLISSSF--AS-LPLK-----IPGTAFYRGIKARDRMYAMLDSIISKRRSG----  238 (468)
Q Consensus       175 ~~~~fG~~~~~~----~~~~~~~~~~~~~~~~--~~-~p~~-----~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~----  238 (468)
                      ++++||.+.+..    ....+.+.+.......  .. .|.+     ++....++..++.+.+.+++.+.++++++.    
T Consensus       183 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  262 (516)
T PLN03195        183 CKVGFGVEIGTLSPSLPENPFAQAFDTANIIVTLRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEA  262 (516)
T ss_pred             HHHHhCCCccccccCCCccHHHHHHHHHHHHHHHHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999875411    1122333332221111  01 1211     111112233456667777788877765432    


Q ss_pred             ----CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 012199          239 ----ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREI  314 (468)
Q Consensus       239 ----~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~  314 (468)
                          .....|+++.+++.      ..+++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++
T Consensus       263 ~~~~~~~~~d~l~~ll~~------~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~  336 (516)
T PLN03195        263 RKSGKKVKHDILSRFIEL------GEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKAL  336 (516)
T ss_pred             ccccccccccHHHHHHhc------cCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                11245899999862      11223458999999999999999999999999999999999999999999999987


Q ss_pred             HHhh-----------------CCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCcccee-cCeEecCCCEEeec
Q 012199          315 QANR-----------------NGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEI-EGYKIVKGWSINLD  376 (468)
Q Consensus       315 ~~~~-----------------~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i-~g~~ip~g~~v~~~  376 (468)
                      ..+.                 +.++.++++++.+||||+|||+||||++|+++...|.+.+|..+ +||.|||||.|.++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~  416 (516)
T PLN03195        337 EKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYV  416 (516)
T ss_pred             hhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEe
Confidence            5421                 01346899999999999999999999999999888878777665 99999999999999


Q ss_pred             chhhccCCCCC-CCCCCCCCCCCCCC-----CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC-CC
Q 012199          377 VVSIHHDPGIF-ANPEKFDPSRFDAP-----IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD-SV  449 (468)
Q Consensus       377 ~~~~~~d~~~~-~~p~~f~P~R~l~~-----~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~  449 (468)
                      .+++||||++| +||++|+||||++.     ..+..++|||+|+|.|+|++||++|++++++.++++|++++.++.. ..
T Consensus       417 ~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~  496 (516)
T PLN03195        417 PYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKY  496 (516)
T ss_pred             hHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCccee
Confidence            99999999999 99999999999963     2345799999999999999999999999999999999999875432 23


Q ss_pred             CcccccCCCCCcceeeeeC
Q 012199          450 QPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       450 ~~~~~~~p~~~~~~~~~~~  468 (468)
                      ....+..|+++++|+++|+
T Consensus       497 ~~~~~~~~~~~~~v~~~~r  515 (516)
T PLN03195        497 RMMTILSMANGLKVTVSRR  515 (516)
T ss_pred             eeeeEEecCCCEEEEEEeC
Confidence            3345678999999999874


No 23 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=1.9e-70  Score=538.55  Aligned_cols=402  Identities=24%  Similarity=0.380  Sum_probs=319.1

Q ss_pred             hHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceeccccccc-ccccCCCccccCChhHHHHHHHhhhc
Q 012199           52 IYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLFYTG-QQVLGPTSLLQTNGEAHKRLRRLIAE  130 (468)
Q Consensus        52 ~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~R~~~~~  130 (468)
                      ++..+.+++++|||||++++++.++++|+||+.+++++..+...+.++..... ....| .++++.+|+.|+.+|+.+++
T Consensus       153 ~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g-~~l~~~dge~wr~rRr~l~p  231 (633)
T PLN02738        153 FFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMG-KGLIPADGEIWRVRRRAIVP  231 (633)
T ss_pred             HHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccC-CceecCCcHHHHHHHHhccH
Confidence            47889999999999999998888899999999999999877665665533212 22334 67888999999999999999


Q ss_pred             CCChhHHhhhHHHHHHHHHHHHhhhC-----CccccHHHHHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHHHHh
Q 012199          131 PLSVDGLKKYFQFINTLAIETLDQWS-----GKKVLVLEEASTFTLKVIGNMIMSLEPTG-----EEQEKFRANFKLISS  200 (468)
Q Consensus       131 ~~~~~~l~~~~~~~~~~~~~~l~~~~-----~~~~d~~~~~~~~~~~~~~~~~fG~~~~~-----~~~~~~~~~~~~~~~  200 (468)
                      .|+...++.+.+.+.+.+..+++++.     +.++|+.+.+..+++|+++..+||.+.+.     .....+.+.+..+..
T Consensus       232 ~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~~~~~~~~~~~~~~  311 (633)
T PLN02738        232 ALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAED  311 (633)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999888887762     36899999999999999999999987541     111222222222211


Q ss_pred             -hhccCCCC-CCh-----hhhhhcHHHHHHHHHHHHHHHHHHhc-------C------CCcchhHHHHHHHHhhhhhhhh
Q 012199          201 -SFASLPLK-IPG-----TAFYRGIKARDRMYAMLDSIISKRRS-------G------ESIQQDFLESLIIKHSQAADEE  260 (468)
Q Consensus       201 -~~~~~p~~-~p~-----~~~~~~~~~~~~~~~~~~~~i~~~~~-------~------~~~~~d~~~~ll~~~~~~~~~~  260 (468)
                       .+..++.| +|.     ...++..++.+.+...+.++++.++.       .      .....|+++.+++      .  
T Consensus       312 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~Ll~------~--  383 (633)
T PLN02738        312 RSVSPIPVWEIPIWKDISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILHFLLA------S--  383 (633)
T ss_pred             HhhcchhhhhhhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHHHHHH------c--
Confidence             11112212 111     11123333444455555554442211       0      1123478888876      1  


Q ss_pred             hhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHH
Q 012199          261 ANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVIS  340 (468)
Q Consensus       261 ~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~  340 (468)
                        +..++++++.++++.+++||+|||+++++|++++|++||++|+|||+|++.+.+    +..++++++++||||+|||+
T Consensus       384 --~~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~----~~~~t~edL~kLPYL~AVIk  457 (633)
T PLN02738        384 --GDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG----DRFPTIEDMKKLKYTTRVIN  457 (633)
T ss_pred             --CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC----CCCCCHHHHccCHHHHHHHH
Confidence              135899999999999999999999999999999999999999999999999875    35689999999999999999


Q ss_pred             hhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCC-------CCCccccccCCC
Q 012199          341 ETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAP-------IKTFSFLGFGSG  413 (468)
Q Consensus       341 E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~-------~~~~~~~~Fg~G  413 (468)
                      |+||++|+++.++|++.+|++++||.|||||.|.++.+.+||||++|+||++|+||||+..       ....+++|||.|
T Consensus       458 EtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G  537 (633)
T PLN02738        458 ESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGG  537 (633)
T ss_pred             HHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCC
Confidence            9999999999888999999999999999999999999999999999999999999999842       134579999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCC--cccccCCCCCcceeeeeC
Q 012199          414 PRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQ--PTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       414 ~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~  468 (468)
                      +|.|+|++||+.|++++++.|+++|+|++.++...+.  ...+..|.++++++++++
T Consensus       538 ~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R  594 (633)
T PLN02738        538 PRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRR  594 (633)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEEC
Confidence            9999999999999999999999999999877643333  345778899999999764


No 24 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=3.6e-71  Score=539.77  Aligned_cols=426  Identities=31%  Similarity=0.540  Sum_probs=349.5

Q ss_pred             CCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceecccc-cccc
Q 012199           27 IPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLF-YTGQ  105 (468)
Q Consensus        27 ~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~~  105 (468)
                      ||||+++|++||+.++..  .+++  +.++.+++++||+||++++++.++++|+||+.+++++..++..++.+.. ....
T Consensus         1 Ppgp~~~p~~G~~~~~~~--~~~~--~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~   76 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRR--KGNP--HEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFE   76 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHT--THHH--HHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHH
T ss_pred             CcCCCCcCceeEHHHhcC--CCcH--HHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccc
Confidence            799999999999999842  1344  8889999999999999999999999999999999999998877776532 1121


Q ss_pred             ---cccCCCccccCChhHHHHHHHhhhcCCChh-HHhhhHHHHHHHHHHHHhhhC---C--ccccHHHHHHHHHHHHHHH
Q 012199          106 ---QVLGPTSLLQTNGEAHKRLRRLIAEPLSVD-GLKKYFQFINTLAIETLDQWS---G--KKVLVLEEASTFTLKVIGN  176 (468)
Q Consensus       106 ---~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~---~--~~~d~~~~~~~~~~~~~~~  176 (468)
                         ...++.+++..+|+.|+.+|+.+.+.|+.. .+ ++.+.+.+.+..+++.+.   +  +.+|+.+.++.++++++++
T Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~  155 (463)
T PF00067_consen   77 IFRGPFGGKGLFFSDGERWRRQRRLLAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGR  155 (463)
T ss_dssp             HHHHHHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccc
Confidence               234448899999999999999999999998 66 889999998888887773   2  3699999999999999999


Q ss_pred             HHcCCCC---ChhHHHHHHHHHHHHHhhh--------ccCC--CCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCC----
Q 012199          177 MIMSLEP---TGEEQEKFRANFKLISSSF--------ASLP--LKIPGTAFYRGIKARDRMYAMLDSIISKRRSGE----  239 (468)
Q Consensus       177 ~~fG~~~---~~~~~~~~~~~~~~~~~~~--------~~~p--~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----  239 (468)
                      ++||.+.   ++....++.+.+..+...+        ..+|  .++|...+++..++.+.+.+++.++++++++..    
T Consensus       156 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  235 (463)
T PF00067_consen  156 VLFGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDGD  235 (463)
T ss_dssp             HHHSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSSS
T ss_pred             ccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999873   3232334444444442221        1122  235666666777788889999999988876542    


Q ss_pred             CcchhHHHHHHHHhhhhhhhhhhc-CCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhh
Q 012199          240 SIQQDFLESLIIKHSQAADEEANE-DKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANR  318 (468)
Q Consensus       240 ~~~~d~~~~ll~~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~  318 (468)
                      ....|+++.+++..     .+.++ ..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|++.+.+  
T Consensus       236 ~~~~d~l~~ll~~~-----~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~--  308 (463)
T PF00067_consen  236 ESRRDLLDSLLQAS-----SDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLG--  308 (463)
T ss_dssp             SSCSSHHHHHHHHH-----HTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTT--
T ss_pred             cccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            23568999999832     01222 47999999999999999999999999999999999999999999999999875  


Q ss_pred             CCCCCCChhhhcCChhHHHHHHhhhcCCCCCc-ccccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCCCCCCC
Q 012199          319 NGGSNLTWSEVNNMPYTTKVISETLRRATILP-WFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEKFDPSR  397 (468)
Q Consensus       319 ~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~-~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R  397 (468)
                       .++.++.+++.+||||+|||+||||++|+++ .++|.+.+|++++||.|||||.|+++.+++|+||++|+||++|+|||
T Consensus       309 -~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R  387 (463)
T PF00067_consen  309 -DGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPER  387 (463)
T ss_dssp             -TSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTG
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             3457899999999999999999999999999 68999999999999999999999999999999999999999999999


Q ss_pred             CCCC-----CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCC-c--ccccCCCCCcceee
Q 012199          398 FDAP-----IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQ-P--TLVRMPRNKYPIAV  465 (468)
Q Consensus       398 ~l~~-----~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~-~--~~~~~p~~~~~~~~  465 (468)
                      |++.     ..+..++|||.|+|.|+|++||+.|+++++++|+++|++++.++..... .  ..+..|..+++|+|
T Consensus       388 ~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (463)
T PF00067_consen  388 FLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF  463 (463)
T ss_dssp             GBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred             ccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence            9985     3478899999999999999999999999999999999999976544322 1  24677777777765


No 25 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.5e-70  Score=495.44  Aligned_cols=428  Identities=25%  Similarity=0.390  Sum_probs=350.0

Q ss_pred             CCCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeee-cCCceEEEEcChhhhhhhhcCCCcceeccc--
Q 012199           24 MEGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTY-TLGRFSVIMTGREASKILLTGKDGMVSLNL--  100 (468)
Q Consensus        24 ~~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~-~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~--  100 (468)
                      ...+|||.++|++|.++.+......+-  |......+++||+||+.. +|+...|++.||++++.+++.++.. .-++  
T Consensus        49 ~~~IP~p~~~~~l~~l~~~~~~~~~~l--h~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~~-P~Rp~~  125 (519)
T KOG0159|consen   49 FEEIPGPKGLPFLGLLWIWRAGGATKL--HQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGKY-PFRPLL  125 (519)
T ss_pred             hhhcCCCCCccHHHHHHHHHhhhhhHH--HHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCCC-CCcccc
Confidence            335799999999999885332222334  888889999999999999 7778999999999999999887752 3231  


Q ss_pred             -c--cccccccC-CCccccCChhHHHHHHHhhhcCCC-hhHHhhhHHHHHHHHHHHHhhhC--------CccccHHHHHH
Q 012199          101 -F--YTGQQVLG-PTSLLQTNGEAHKRLRRLIAEPLS-VDGLKKYFQFINTLAIETLDQWS--------GKKVLVLEEAS  167 (468)
Q Consensus       101 -~--~~~~~~~g-~~~~~~~~g~~~~~~R~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~~--------~~~~d~~~~~~  167 (468)
                       .  ..-.+.++ ..|+++.+|++|++.|..+++.+- ++.++.|.+.+.+..++++..++        +.+.|+.+.+.
T Consensus       126 ~~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~  205 (519)
T KOG0159|consen  126 IEPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELY  205 (519)
T ss_pred             cchhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence             1  12233343 578999999999999999976654 58899999999998888876652        15679999999


Q ss_pred             HHHHHHHHHHHcCCCCC------hhHHHHHHHHHHHHHhh----hccCCCC--CChhhhhhcHHHHHHHHHHHHHHHHHH
Q 012199          168 TFTLKVIGNMIMSLEPT------GEEQEKFRANFKLISSS----FASLPLK--IPGTAFYRGIKARDRMYAMLDSIISKR  235 (468)
Q Consensus       168 ~~~~~~~~~~~fG~~~~------~~~~~~~~~~~~~~~~~----~~~~p~~--~p~~~~~~~~~~~~~~~~~~~~~i~~~  235 (468)
                      +++++.++.++||.+.+      +++...+.+....+...    ....++|  ++.+.|++..++.+.+.+...+.|++.
T Consensus       206 ~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~  285 (519)
T KOG0159|consen  206 RWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNA  285 (519)
T ss_pred             HHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997743      24455555555544332    1112333  777789999999988888887777654


Q ss_pred             hc----CCC---cch-hHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHH
Q 012199          236 RS----GES---IQQ-DFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKL  307 (468)
Q Consensus       236 ~~----~~~---~~~-d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l  307 (468)
                      .+    +..   +.. .+...+..            ..++.+++..++++++.||.|||++++.|+||+|++||++|+||
T Consensus       286 l~~l~~~~~~~~~~~~~l~~~L~~------------~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L  353 (519)
T KOG0159|consen  286 LEELEKQDSAGSEYTGSLLELLLR------------KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRL  353 (519)
T ss_pred             HHHHHhccccccchhHHHHHHHHH------------ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHH
Confidence            32    211   112 33343333            35899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCC
Q 012199          308 REEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIF  387 (468)
Q Consensus       308 r~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~  387 (468)
                      ++|+.++..+  .+..++.+++.+||||.||||||+|+||.+++..|+..+|.+++||.|||||.|.++.+.+.+||++|
T Consensus       354 ~~Ei~~~~p~--~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F  431 (519)
T KOG0159|consen  354 REEILAVLPS--GNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYF  431 (519)
T ss_pred             HHHHHhhCCC--cccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhC
Confidence            9999998762  26778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCC----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecC-CCCCCcccccCCCCCcc
Q 012199          388 ANPEKFDPSRFDAPI----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEK-DDSVQPTLVRMPRNKYP  462 (468)
Q Consensus       388 ~~p~~f~P~R~l~~~----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~-~~~~~~~~~~~p~~~~~  462 (468)
                      ++|++|+||||+++.    ++..++|||.|+|+|+|+++|+.|+.++|++++++|+++..++ +....+..+..|..++.
T Consensus       432 ~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~pv~~~~~~il~P~~~l~  511 (519)
T KOG0159|consen  432 PDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEPVEYVYRFILVPNRPLR  511 (519)
T ss_pred             CCccccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCCccceeEEEEcCCCCcc
Confidence            999999999999854    5788999999999999999999999999999999999998885 33445678899999999


Q ss_pred             eeeeeC
Q 012199          463 IAVEPL  468 (468)
Q Consensus       463 ~~~~~~  468 (468)
                      ++|+++
T Consensus       512 f~f~~r  517 (519)
T KOG0159|consen  512 FKFRPR  517 (519)
T ss_pred             eeeeeC
Confidence            999874


No 26 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=5.8e-69  Score=522.72  Aligned_cols=430  Identities=17%  Similarity=0.279  Sum_probs=321.4

Q ss_pred             CCCCCccccccccchHHHHHhhcCCCchHHHHHHHHHhh-CCceeeecCCceEEEEcChhhhhhhhcCCCcceecccccc
Q 012199           25 EGIPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRY-GKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLFYT  103 (468)
Q Consensus        25 ~~~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~y-G~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~~~  103 (468)
                      ..||||+++|++||++++.   ...+. ..++.++.++| |+||++++++.++|+|+||+.+++++.++...|++++...
T Consensus        40 ~~PPgp~~~P~iGnl~~l~---~~~~~-~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~  115 (534)
T PLN03018         40 QLPPGPPGWPILGNLPELI---MTRPR-SKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLS  115 (534)
T ss_pred             CCCcCCCCCCeeccHHHhc---cCCCc-chhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCch
Confidence            4689999999999998873   12220 23455666666 7999999999999999999999999998777787775422


Q ss_pred             cccccCC--CccccC-ChhHHHHHHHhhhcCCChhHHhhhH-HHHHHHHHHHHhhh----C-CccccHHHHHHHHHHHHH
Q 012199          104 GQQVLGP--TSLLQT-NGEAHKRLRRLIAEPLSVDGLKKYF-QFINTLAIETLDQW----S-GKKVLVLEEASTFTLKVI  174 (468)
Q Consensus       104 ~~~~~g~--~~~~~~-~g~~~~~~R~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~----~-~~~~d~~~~~~~~~~~~~  174 (468)
                      ....++.  .++.+. +|+.|+++|+++++.|......+.. +.+++.+.++++.+    . +.++|+.+.+..++++++
T Consensus       116 ~~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi  195 (534)
T PLN03018        116 IMETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVT  195 (534)
T ss_pred             hhhhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHH
Confidence            2233342  245555 5999999999999987665544444 44444455555443    2 357999999999999999


Q ss_pred             HHHHcCCCCCh---------hHHHHHHHHHHHHHhhhccCCC---------CCCh----hhhhhcHHHHHHHHHHHHHHH
Q 012199          175 GNMIMSLEPTG---------EEQEKFRANFKLISSSFASLPL---------KIPG----TAFYRGIKARDRMYAMLDSII  232 (468)
Q Consensus       175 ~~~~fG~~~~~---------~~~~~~~~~~~~~~~~~~~~p~---------~~p~----~~~~~~~~~~~~~~~~~~~~i  232 (468)
                      ++++||.+.+.         .....+...+..+...+..+|.         |+..    ....+.......+.+++.+++
T Consensus       196 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  275 (534)
T PLN03018        196 MRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPII  275 (534)
T ss_pred             HHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999987421         1111121112222221111111         1110    001222334455677777777


Q ss_pred             HHHhc----CCC--cchhHHHHHHHHhhhhhhhhhhcC-CCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHH
Q 012199          233 SKRRS----GES--IQQDFLESLIIKHSQAADEEANED-KLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQ  305 (468)
Q Consensus       233 ~~~~~----~~~--~~~d~~~~ll~~~~~~~~~~~~~~-~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~  305 (468)
                      +++++    ..+  ...|+++.+++..      ++++. .++++++++++.++++||+|||+++++|++++|+.||++|+
T Consensus       276 ~~~~~~~~~~~~~~~~~d~l~~ll~~~------~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~  349 (534)
T PLN03018        276 DERVELWREKGGKAAVEDWLDTFITLK------DQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILR  349 (534)
T ss_pred             HHHHHHhhhccCCCCcccHHHHHHHhh------cccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence            76543    111  2358999998621      11222 48999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCccc-ccccCccceecCeEecCCCEEeecchhhccCC
Q 012199          306 KLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWF-SRKAAQDFEIEGYKIVKGWSINLDVVSIHHDP  384 (468)
Q Consensus       306 ~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~  384 (468)
                      |+++|++++.+   .++.++.+++.+||||+|||+||||++|+++.. .|++.+|++++||.|||||.|+++.+++||||
T Consensus       350 kl~~Ei~~v~~---~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp  426 (534)
T PLN03018        350 KALKELDEVVG---KDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNP  426 (534)
T ss_pred             HHHHHHHHHhC---CCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCc
Confidence            99999999875   356789999999999999999999999999975 69999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC----------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCC--CC--
Q 012199          385 GIFANPEKFDPSRFDAPI----------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDS--VQ--  450 (468)
Q Consensus       385 ~~~~~p~~f~P~R~l~~~----------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~--~~--  450 (468)
                      ++|+||++|+||||++..          .+..++|||+|+|.|+|++||..|+++++++|+++|++++.++...  +.  
T Consensus       427 ~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~  506 (534)
T PLN03018        427 KIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEED  506 (534)
T ss_pred             ccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcccc
Confidence            999999999999998632          2457999999999999999999999999999999999997765322  21  


Q ss_pred             cccccCCCCCcceeeeeC
Q 012199          451 PTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       451 ~~~~~~p~~~~~~~~~~~  468 (468)
                      ...+.. .++++++++|+
T Consensus       507 ~~~~~~-p~~~~v~~~~R  523 (534)
T PLN03018        507 DASLLM-AKPLLLSVEPR  523 (534)
T ss_pred             ccceec-CCCeEEEEEec
Confidence            133444 46899998874


No 27 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=2.9e-69  Score=521.07  Aligned_cols=423  Identities=22%  Similarity=0.336  Sum_probs=326.5

Q ss_pred             CCCccccccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceecccc-cccc
Q 012199           27 IPGSLGLPIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLF-YTGQ  105 (468)
Q Consensus        27 ~Pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~~  105 (468)
                      ||||+++|++||++++   ...++  +.++.+|+++||++|++++++.++++|+||+.+++++.++...|+++.. ....
T Consensus         1 ppgp~~lP~iG~l~~~---~~~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~   75 (466)
T PLN02655          1 VPAVPGLPVIGNLLQL---KEKKP--HRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALT   75 (466)
T ss_pred             CcCCCCCCccccHHHc---CCCch--hHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHH
Confidence            6899999999999888   32345  8899999999999999999999999999999999999887777776643 2233


Q ss_pred             cccCCC-ccccC-ChhHHHHHHHhhh-cCCChhHHhhhHHHHHHHHHHHHhhh-------CCccccHHHHHHHHHHHHHH
Q 012199          106 QVLGPT-SLLQT-NGEAHKRLRRLIA-EPLSVDGLKKYFQFINTLAIETLDQW-------SGKKVLVLEEASTFTLKVIG  175 (468)
Q Consensus       106 ~~~g~~-~~~~~-~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~-------~~~~~d~~~~~~~~~~~~~~  175 (468)
                      .+.|.. .+... +|+.|+++|+.+. +.++...++.+.+.+.+.+..+++.+       .++++|+.+.+..+++|+++
T Consensus        76 ~~~~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~  155 (466)
T PLN02655         76 VLTRDKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSL  155 (466)
T ss_pred             HHhcCCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHH
Confidence            344422 34444 4899999998664 56776677777776665544433332       23679999999999999999


Q ss_pred             HHHcCCCCChhH----H------HHHHHHHHHHHhhhc------cCCC--CCChhhhhh-cHHHHHHHHHHHHHHHHHHh
Q 012199          176 NMIMSLEPTGEE----Q------EKFRANFKLISSSFA------SLPL--KIPGTAFYR-GIKARDRMYAMLDSIISKRR  236 (468)
Q Consensus       176 ~~~fG~~~~~~~----~------~~~~~~~~~~~~~~~------~~p~--~~p~~~~~~-~~~~~~~~~~~~~~~i~~~~  236 (468)
                      .++||.+.+...    .      ..+...+..+.....      .+|.  |+|...+.+ ..+....+.+++.+++++++
T Consensus       156 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  235 (466)
T PLN02655        156 IQALGEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQK  235 (466)
T ss_pred             HHHhccccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999997644211    0      112222222222211      1221  223221222 22223344566767766554


Q ss_pred             cC---CCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 012199          237 SG---ESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHRE  313 (468)
Q Consensus       237 ~~---~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~  313 (468)
                      +.   .....|+++.+++      ..    ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++.
T Consensus       236 ~~~~~~~~~~d~l~~ll~------~~----~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~  305 (466)
T PLN02655        236 KRIARGEERDCYLDFLLS------EA----THLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIRE  305 (466)
T ss_pred             HhhcCCCCcccHHHHHHh------cc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            32   2234589999986      11    35899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCccc-ccccCccceecCeEecCCCEEeecchhhccCCCCCCCCCC
Q 012199          314 IQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWF-SRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPEK  392 (468)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~  392 (468)
                      +.+    +..++.+++.+|||++|||+||||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++|+||++
T Consensus       306 ~~~----~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~  381 (466)
T PLN02655        306 VCG----DERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEE  381 (466)
T ss_pred             HhC----CCCCCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhc
Confidence            876    23389999999999999999999999999964 7999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC----CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCCCC--cccccCCCCCcceeee
Q 012199          393 FDPSRFDAPI----KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDSVQ--PTLVRMPRNKYPIAVE  466 (468)
Q Consensus       393 f~P~R~l~~~----~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~  466 (468)
                      |+||||++..    ....++|||+|+|.|||++||+.|+++++++|+++|++++.++.....  .+.+..|++++++++.
T Consensus       382 F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
T PLN02655        382 WDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLK  461 (466)
T ss_pred             cCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEe
Confidence            9999999742    346899999999999999999999999999999999999876543222  3556779999999987


Q ss_pred             eC
Q 012199          467 PL  468 (468)
Q Consensus       467 ~~  468 (468)
                      ++
T Consensus       462 ~r  463 (466)
T PLN02655        462 PR  463 (466)
T ss_pred             ec
Confidence            63


No 28 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.2e-68  Score=472.34  Aligned_cols=427  Identities=22%  Similarity=0.386  Sum_probs=352.1

Q ss_pred             CCCCCcccc-ccccchHHHHHhhcCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceecc--cc
Q 012199           25 EGIPGSLGL-PIVGESFAFLSAFSKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLN--LF  101 (468)
Q Consensus        25 ~~~Pgp~~~-p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~--~~  101 (468)
                      ..||--++| |++|++..+    .+++  .+++++.++|||+||++.++|+.+.++.||+....+++.....++-.  +.
T Consensus        31 ~~PPli~gwiP~lG~a~~f----gk~P--~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~  104 (486)
T KOG0684|consen   31 KEPPLIKGWIPWLGSALAF----GKDP--LEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYS  104 (486)
T ss_pred             CCCcccccCcchhhHHHHh----ccCH--HHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHH
Confidence            678888887 999999998    3788  99999999999999999999999999999999999998874444433  22


Q ss_pred             cccccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhh-hCC-ccc-cHHHHHHHHHHHHHHHHH
Q 012199          102 YTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQ-WSG-KKV-LVLEEASTFTLKVIGNMI  178 (468)
Q Consensus       102 ~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~-~~~-d~~~~~~~~~~~~~~~~~  178 (468)
                      ....+.+|++......+....++.+++..++....++++.+.|.+++.+.+.. +.+ ... .+...+..+++.+.-.++
T Consensus       105 ~l~~~vFg~~v~~d~~~~~~~e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~s~~~d~l~~~~~~ii~tAs~~ll  184 (486)
T KOG0684|consen  105 KLTTPVFGKGVVYDVPNHVMMEQKKFFKSALGGVALKSLVELMLEELHAYFETSLGESGETDGLYTFCRLIIFTASRLLL  184 (486)
T ss_pred             HhhhhhcCCCccccCCCchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhcccccccchhHhhhhhHHHhhhhHHHhh
Confidence            55677888666667788899999999999999999999999999999988877 533 344 455555555555555555


Q ss_pred             cCCCCChhHHHHHHHHHHHHHhhhc----cCCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHh
Q 012199          179 MSLEPTGEEQEKFRANFKLISSSFA----SLPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGES-IQQDFLESLIIKH  253 (468)
Q Consensus       179 fG~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~~~ll~~~  253 (468)
                      +|..-. .........+.++...+.    .+|.++|....++..++++.+.+.+...+.+++++.+ ...|+++.+++. 
T Consensus       185 ~~e~r~-~~d~~~a~l~~dLd~~F~~~d~~FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~~~-  262 (486)
T KOG0684|consen  185 GGEVRD-QLDADVAKLYHDLDQGFQPFDFLFPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISKWDNDMLQSLMEK-  262 (486)
T ss_pred             hhhhhh-hhcchHHHHHHHHhccccchHhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-
Confidence            554322 112222233333333332    3555778877888889999999999999999888765 345888888761 


Q ss_pred             hhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCCh
Q 012199          254 SQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMP  333 (468)
Q Consensus       254 ~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp  333 (468)
                            ..++...+++|+...++.+++||+.||+.+.+|++++|++|||+++++++|++.+++.  ....++.+++++||
T Consensus       263 ------y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~--~~~~l~~d~L~~lp  334 (486)
T KOG0684|consen  263 ------YKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGE--KKEKLTYDQLKDLP  334 (486)
T ss_pred             ------hhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhc--cCCCCCHHHHhcch
Confidence                  2345678999999999999999999999999999999999999999999999999862  34459999999999


Q ss_pred             hHHHHHHhhhcCCCCCcccccccCccceecC----eEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCCCC------
Q 012199          334 YTTKVISETLRRATILPWFSRKAAQDFEIEG----YKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAPIK------  403 (468)
Q Consensus       334 ~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~------  403 (468)
                      .|+.||+|||||+||.+.+.|.+.+|.++.+    |.||+|..|.+++..+|+||++|+||+.|+||||+++..      
T Consensus       335 lL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g  414 (486)
T KOG0684|consen  335 LLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNG  414 (486)
T ss_pred             HHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccc
Confidence            9999999999999999989999999998866    999999999999999999999999999999999996321      


Q ss_pred             ---CccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecC-CCCCCc-ccccCCCCCcceeeee
Q 012199          404 ---TFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEK-DDSVQP-TLVRMPRNKYPIAVEP  467 (468)
Q Consensus       404 ---~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~-~~~~~~-~~~~~p~~~~~~~~~~  467 (468)
                         +++|+|||+|+|.|||+.||.+|+|+++..+|+.||+|++++ -+++.+ .++..|.++++|+.+.
T Consensus       415 ~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~  483 (486)
T KOG0684|consen  415 EKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKR  483 (486)
T ss_pred             ccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHHHhhcCCCCCceEEEee
Confidence               346799999999999999999999999999999999999995 345555 6689999999988754


No 29 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=9.1e-67  Score=505.84  Aligned_cols=425  Identities=22%  Similarity=0.347  Sum_probs=330.6

Q ss_pred             CCCccccccccchHHHHHhh-cCCCchHHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCCcceecccc-ccc
Q 012199           27 IPGSLGLPIVGESFAFLSAF-SKPSGIYSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLF-YTG  104 (468)
Q Consensus        27 ~Pgp~~~p~lG~~~~~~~~~-~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~-~~~  104 (468)
                      =.|-.|||++|+.++..... .+..  +.++.+|+++||+||++++++.+.++++||+++++++.+.+..|.++.. ...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~   91 (489)
T PLN02936         14 WGDDSGIPVADAKLEDVTDLLGGAL--FLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVS   91 (489)
T ss_pred             CCCCCCCccHHhHHhhHHHHhccHH--HHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhh
Confidence            35778899999988876532 2344  8999999999999999999999999999999999999876555665533 222


Q ss_pred             ccccCCCccccCChhHHHHHHHhhhcCCChhHHhhhHH-HHHHHHHHHHhhh-----CCccccHHHHHHHHHHHHHHHHH
Q 012199          105 QQVLGPTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQ-FINTLAIETLDQW-----SGKKVLVLEEASTFTLKVIGNMI  178 (468)
Q Consensus       105 ~~~~g~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~-----~~~~~d~~~~~~~~~~~~~~~~~  178 (468)
                      ...+| .+++..+|+.|+++|+++++.|+...+..+.+ .+.+.+..+++.+     .+.++|+.+.++.+++++++.++
T Consensus        92 ~~~~~-~~i~~~~g~~wk~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~  170 (489)
T PLN02936         92 EFLFG-SGFAIAEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSV  170 (489)
T ss_pred             HHHhc-CccccCCchHHHHHHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHH
Confidence            23455 67888999999999999999999888887655 5566666665554     23689999999999999999999


Q ss_pred             cCCCCChhH-HHHHHHHHHHHHh-----hhccCCCC-CC-----hhhhhhcHHHHHHHHHHHHHHHHHHhcC----C---
Q 012199          179 MSLEPTGEE-QEKFRANFKLISS-----SFASLPLK-IP-----GTAFYRGIKARDRMYAMLDSIISKRRSG----E---  239 (468)
Q Consensus       179 fG~~~~~~~-~~~~~~~~~~~~~-----~~~~~p~~-~p-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~---  239 (468)
                      ||.+.+... ...+.+.+.....     ....+|.+ .+     .+..++..++.+.+.+++.+.+++++..    .   
T Consensus       171 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~  250 (489)
T PLN02936        171 FNYNFDSLTTDSPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVI  250 (489)
T ss_pred             cCCCccccccCcHHHHHHHHHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            998854211 1112221111111     11112211 00     1123345566777777777777654321    0   


Q ss_pred             -------CcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHH
Q 012199          240 -------SIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHR  312 (468)
Q Consensus       240 -------~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~  312 (468)
                             ....|+++.+++      ..    ..++++++.++++.+++||+|||+++++|++++|++||++|+|+|+|++
T Consensus       251 ~~~~~~~~~~~d~l~~ll~------~~----~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~  320 (489)
T PLN02936        251 EGEEYVNDSDPSVLRFLLA------SR----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELD  320 (489)
T ss_pred             ccccccccCchHHHHHHHh------cc----ccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                   123578888876      11    2488999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCccc-ccccCccceecCeEecCCCEEeecchhhccCCCCCCCCC
Q 012199          313 EIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWF-SRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIFANPE  391 (468)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~-~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~  391 (468)
                      .+.+    +..++++++.+||||+|||+||||++|+++.. .|.+.+|+.++||.||||+.|+++.+++||||++|+||+
T Consensus       321 ~~~~----~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~  396 (489)
T PLN02936        321 RVLQ----GRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAE  396 (489)
T ss_pred             HHhc----CCCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCcc
Confidence            9875    34579999999999999999999999999864 455567788899999999999999999999999999999


Q ss_pred             CCCCCCCCCCC-------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCCC-CCcccccCCCCCcce
Q 012199          392 KFDPSRFDAPI-------KTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDDS-VQPTLVRMPRNKYPI  463 (468)
Q Consensus       392 ~f~P~R~l~~~-------~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~-~~~~~~~~p~~~~~~  463 (468)
                      +|+||||+.+.       .+..++|||.|+|.|+|++||+.|+++++++|+++|++++.++++. .....+..|.++++|
T Consensus       397 ~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v  476 (489)
T PLN02936        397 EFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIVMTTGATIHTTNGLYM  476 (489)
T ss_pred             ccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccceecceEEeeCCCeEE
Confidence            99999998532       1358999999999999999999999999999999999998765432 122456678889999


Q ss_pred             eeeeC
Q 012199          464 AVEPL  468 (468)
Q Consensus       464 ~~~~~  468 (468)
                      +++|+
T Consensus       477 ~~~~R  481 (489)
T PLN02936        477 TVSRR  481 (489)
T ss_pred             EEEee
Confidence            99874


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=1.2e-65  Score=497.03  Aligned_cols=413  Identities=19%  Similarity=0.276  Sum_probs=322.2

Q ss_pred             cccccchHHHHHhhcCCCchHHHHHHHHHhhC-CceeeecCCceEEEEcChhhhhhhhcCCCcceecccc--cccccccC
Q 012199           33 LPIVGESFAFLSAFSKPSGIYSFVKERQQRYG-KVFKTYTLGRFSVIMTGREASKILLTGKDGMVSLNLF--YTGQQVLG  109 (468)
Q Consensus        33 ~p~lG~~~~~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~vvv~dp~~~~~i~~~~~~~~~~~~~--~~~~~~~g  109 (468)
                      .++.|++...+    .+.  +.++..+.++++ .+++++.++.  ++++||+.+++++..+...|.+...  .....++|
T Consensus        49 ~~~~g~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g  120 (502)
T PLN02426         49 AYLTASWAKDF----DNL--CDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLG  120 (502)
T ss_pred             CCccHHHHHhc----ccH--HHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcC
Confidence            45788876652    344  666767888887 5777776564  8999999999999876544654422  23345567


Q ss_pred             CCccccCChhHHHHHHHhhhcCCChhHHhhhH--HHHHHHHHHHHhhh---C----CccccHHHHHHHHHHHHHHHHHcC
Q 012199          110 PTSLLQTNGEAHKRLRRLIAEPLSVDGLKKYF--QFINTLAIETLDQW---S----GKKVLVLEEASTFTLKVIGNMIMS  180 (468)
Q Consensus       110 ~~~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~--~~~~~~~~~~l~~~---~----~~~~d~~~~~~~~~~~~~~~~~fG  180 (468)
                       +++++.+|+.|+++||++++.|+.+.++.+.  +.+.+....+++.+   .    +.++|+.+.++.+++|+++.++||
T Consensus       121 -~gi~~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG  199 (502)
T PLN02426        121 -RGIFNVDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFG  199 (502)
T ss_pred             -CceeecCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhC
Confidence             7899999999999999999999998888764  45555444444333   1    256999999999999999999999


Q ss_pred             CCCChh----HHHHHHHHHHHHHh-----hhccCCC------CCChhhhhhcHHHHHHHHHHHHHHHHHHhcCC-Ccchh
Q 012199          181 LEPTGE----EQEKFRANFKLISS-----SFASLPL------KIPGTAFYRGIKARDRMYAMLDSIISKRRSGE-SIQQD  244 (468)
Q Consensus       181 ~~~~~~----~~~~~~~~~~~~~~-----~~~~~p~------~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~d  244 (468)
                      .+.+..    ...++.+.+..+..     .+...|+      +++....++..++.+.+.+++.++|+++++.. +...|
T Consensus       200 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~~~~d  279 (502)
T PLN02426        200 LDPGCLELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGFSASKD  279 (502)
T ss_pred             CCCcccCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcch
Confidence            875411    12233333333221     1111121      12222234556778888999999998876542 23468


Q ss_pred             HHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCC
Q 012199          245 FLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNL  324 (468)
Q Consensus       245 ~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~  324 (468)
                      +++.+++      .      ..+++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.+.  ....+
T Consensus       280 ll~~ll~------~------~~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~--~~~~~  345 (502)
T PLN02426        280 LLSRFMA------S------INDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGP--NQEAA  345 (502)
T ss_pred             HHHHHHh------c------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC--CCCCC
Confidence            9999987      1      13688999999999999999999999999999999999999999999988652  23468


Q ss_pred             ChhhhcCChhHHHHHHhhhcCCCCCcccccccCcccee-cCeEecCCCEEeecchhhccCCCCC-CCCCCCCCCCCCCC-
Q 012199          325 TWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEI-EGYKIVKGWSINLDVVSIHHDPGIF-ANPEKFDPSRFDAP-  401 (468)
Q Consensus       325 ~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~-  401 (468)
                      +++++++||||+|||+|+||++|+++...|++.+|.++ +|+.|||||.|.++.+++||||++| +||++|+||||++. 
T Consensus       346 t~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~  425 (502)
T PLN02426        346 SFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNG  425 (502)
T ss_pred             CHHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCC
Confidence            99999999999999999999999999878999998887 9999999999999999999999999 99999999999973 


Q ss_pred             ----CCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeecCCC---CCCcccccCCCCCcceeeeeC
Q 012199          402 ----IKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALEKDD---SVQPTLVRMPRNKYPIAVEPL  468 (468)
Q Consensus       402 ----~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~  468 (468)
                          ..+..++|||+|+|.|+|++||++|++++++.|+++|++++.++..   ......+..|+++++|+++++
T Consensus       426 ~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r  499 (502)
T PLN02426        426 VFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER  499 (502)
T ss_pred             CcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence                2345799999999999999999999999999999999999865432   223356789999999999874


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=1.8e-62  Score=467.27  Aligned_cols=397  Identities=20%  Similarity=0.328  Sum_probs=304.5

Q ss_pred             CCCCCCCCCccccccccchHHHHHh-hcCCCchHHHHHHHHHhhCC-ceeeecCCceE-------EEEcChhhhhhhhcC
Q 012199           21 PKEMEGIPGSLGLPIVGESFAFLSA-FSKPSGIYSFVKERQQRYGK-VFKTYTLGRFS-------VIMTGREASKILLTG   91 (468)
Q Consensus        21 ~~~~~~~Pgp~~~p~lG~~~~~~~~-~~~~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------vvv~dp~~~~~i~~~   91 (468)
                      ..+.+.|||+.+||++|++++++.. ...++  ..|+.+..+|||+ ||+++++|.++       |+++||+.++.+|.+
T Consensus        13 ~~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~--~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~   90 (480)
T PLN02648         13 SLPLREIPGSYGLPFLGAIKDRLDYFYFQGE--DEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDV   90 (480)
T ss_pred             CCCCCCCCCCCCCcCcchhhhhhhHHHhcCh--HHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecc
Confidence            4455679999999999999877652 23555  7899999999999 99999999665       999999999999985


Q ss_pred             ----CCcceecccccccccccCCC---ccccCChhHHHHHHHhhhcCCChhHHhhhHHHHHHHHHHHHhhhCC-----cc
Q 012199           92 ----KDGMVSLNLFYTGQQVLGPT---SLLQTNGEAHKRLRRLIAEPLSVDGLKKYFQFINTLAIETLDQWSG-----KK  159 (468)
Q Consensus        92 ----~~~~~~~~~~~~~~~~~g~~---~~~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----~~  159 (468)
                          ++..+...++.... ++|++   +++..+|+.|+++|+++.+.|+ ..++.+.+.|.+.+.++++.|.+     .+
T Consensus        91 ~~~~~~~~~~~~~~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~  168 (480)
T PLN02648         91 SKVDKRDVFTGTYMPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGK  168 (480)
T ss_pred             hhccccccceeeeccCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence                55456556555554 88866   7888899999999999999999 57788999999999999999942     47


Q ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHhhhcc---CCCCCChhhhhhcHHHHHHHHHHHHHHHHHHh
Q 012199          160 VLVLEEASTFTLKVIGNMIMSLEPTGEEQEKFRANFKLISSSFAS---LPLKIPGTAFYRGIKARDRMYAMLDSIISKRR  236 (468)
Q Consensus       160 ~d~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~  236 (468)
                      +|+.+.++.++++++++++||.+.+.   ..+.+.+..+...+..   +|..            ...+...+++++.++.
T Consensus       169 vdv~~~~~~lt~~vi~~~lfG~~~~~---~~l~~~~~~~~~~~~~~~~~p~~------------~~~l~~~~~~~i~~~~  233 (480)
T PLN02648        169 AEFNDPLDQMAFNFLCKALTGKDPSE---TALGSDGPALIQKWLALQLAPLA------------STGLPHVLEELLLHTF  233 (480)
T ss_pred             ccccchHHHHHHHHHHHHHcCCCcch---hhhccchhHHHHHHHHHHhhHHH------------HcCchHHHHHHhhccc
Confidence            99999999999999999999987652   2232222222221111   1110            0011112222221110


Q ss_pred             cC-----CCcchhHH-------HHHHHHhhhhhhhhhhcCCCCHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhhChH-
Q 012199          237 SG-----ESIQQDFL-------ESLIIKHSQAADEEANEDKLTDKQLKDNILT-LLVAGHDTTTAALTWLIKFIEENPA-  302 (468)
Q Consensus       237 ~~-----~~~~~d~~-------~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~L~~~p~-  302 (468)
                      ..     ....++++       +.+++      ...  ..+++++++.++++. ..+++++|++++++|++++|++||+ 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~ll~------~~~--~~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~  305 (480)
T PLN02648        234 PLPFFLVKSDYDKLYDFFRASATEALD------LAE--KFGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEE  305 (480)
T ss_pred             CCchhhhhccHHHHHHHHHHHHHHHHH------HHH--hcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHH
Confidence            00     01111222       23333      111  135999999999875 3466777888899999999999995 


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceec----CeEecCCCEEeecch
Q 012199          303 VLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIE----GYKIVKGWSINLDVV  378 (468)
Q Consensus       303 ~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~----g~~ip~g~~v~~~~~  378 (468)
                      +|+||++|++.+.+.  .+..++++++++|||+++||+|+||++|++++..|.+.+|++++    ||.||||+.|+++.+
T Consensus       306 v~~klr~Ei~~~~~~--~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~  383 (480)
T PLN02648        306 LQARLAEEVRSAVKA--GGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQP  383 (480)
T ss_pred             HHHHHHHHHHHHhcc--CCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChH
Confidence            999999999998742  24568999999999999999999999999998889999999996    799999999999999


Q ss_pred             hhccCCCCCCCCCCCCCCCCCCCC--CCcccccc---------CCCCCCCCchHHHHHHHHHHHHHHHhcCe-eeeecCC
Q 012199          379 SIHHDPGIFANPEKFDPSRFDAPI--KTFSFLGF---------GSGPRMCPGINLAKLEICIFIHHLVCRYK-WRALEKD  446 (468)
Q Consensus       379 ~~~~d~~~~~~p~~f~P~R~l~~~--~~~~~~~F---------g~G~r~C~G~~~a~~~~~~~l~~ll~~f~-~~~~~~~  446 (468)
                      .+||||++|+||++|||+||+++.  ....+++|         |+|+|.|+|++||+.|++++++.|+++|+ |++.++.
T Consensus       384 ~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~  463 (480)
T PLN02648        384 LVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT  463 (480)
T ss_pred             HHhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence            999999999999999999998632  22345555         56779999999999999999999999998 9976554


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=4.3e-58  Score=432.60  Aligned_cols=376  Identities=30%  Similarity=0.475  Sum_probs=307.2

Q ss_pred             HHHHHHHHHhhCCceeeecCCce--EEEEcChhhhhhhhcCCCcceecccc-----cccccccCCCccccCChhHHHHHH
Q 012199           53 YSFVKERQQRYGKVFKTYTLGRF--SVIMTGREASKILLTGKDGMVSLNLF-----YTGQQVLGPTSLLQTNGEAHKRLR  125 (468)
Q Consensus        53 ~~~~~~~~~~yG~v~~~~~~~~~--~vvv~dp~~~~~i~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~g~~~~~~R  125 (468)
                      ..+...+.+.||.++.....+..  .+++++++++++++.++. .+++...     ....+.+|..++++.||+.|.++|
T Consensus        25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~R  103 (411)
T COG2124          25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLR  103 (411)
T ss_pred             hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHHH
Confidence            34455677888988888776654  899999999999998875 2333221     113466675558899999999999


Q ss_pred             HhhhcCCChhHHhhhHHHHHHHHHHHHhhhCC-ccccHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHhhhcc
Q 012199          126 RLIAEPLSVDGLKKYFQFINTLAIETLDQWSG-KKVLVLEEASTFTLKVIGNMIMSLEPTGEEQEKFRANFKLISSSFAS  204 (468)
Q Consensus       126 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~  204 (468)
                      |+++++|+++.++.+.+.+.+.+.++++++.. ...++.+.+..+++++++ .+||.+.+  +...+............ 
T Consensus       104 kl~~~~F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~--~~~~~~~~~~~~~~~~~-  179 (411)
T COG2124         104 KLLAPAFTPRALRGYRPLIREIADRLLDDLWQGGADLVLDFAAELTLRVIA-ELLGVPLE--DRPQLLRWSDALLLRLD-  179 (411)
T ss_pred             HHhccccCHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHhhhhhHHHHH-HHhCCCHH--HHHHHHHHHHHHHhccC-
Confidence            99999999999999999999999999988733 467788899999999999 99998866  33333332222222211 


Q ss_pred             CCCCCChhhhhhcHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHhhhh
Q 012199          205 LPLKIPGTAFYRGIKARDRMYAMLDSIISKRRSGESIQQDFLESLIIKHSQAADEEANEDKLTDKQLKDNILTLLVAGHD  284 (468)
Q Consensus       205 ~p~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~ll~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ag~~  284 (468)
                       +...+...+.+..++...+.+++.++|++++..+  ..|+++.++.      ..++++..++++|+.++++++++||+|
T Consensus       180 -~~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~~--~~dlls~l~~------a~~~~~~~lsd~Ei~~~~~~ll~AGhe  250 (411)
T COG2124         180 -PDLGPEEPWRRARAARRELDAYLRALIAERRAAP--RDDLLSLLLS------AEDDGGGRLSDDEIRDELITLLVAGHE  250 (411)
T ss_pred             -cccCCcccHHHHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHH------HhhCCCCcCCHHHHHHHHHHHHHhhhH
Confidence             3333334467778899999999999999999544  4589999987      223222369999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhhCCCCCCChhhhcCChhHHHHHHhhhcCCCCCcccccccCccceecC
Q 012199          285 TTTAALTWLIKFIEENPAVLQKLREEHREIQANRNGGSNLTWSEVNNMPYTTKVISETLRRATILPWFSRKAAQDFEIEG  364 (468)
Q Consensus       285 tt~~~l~~~l~~L~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g  364 (468)
                      ||+++|+|+++.|++||++++++++|.+.                   ||++++|+|+||++||++.+.|.+++|++++|
T Consensus       251 TTa~~l~~a~~~L~~~P~~~~~l~~e~~~-------------------~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg  311 (411)
T COG2124         251 TTANALAWALYALLRHPDQLAKLRAEPDR-------------------PLLEAVVEETLRLYPPVPLARRVATEDVELGG  311 (411)
T ss_pred             HHHHHHHHHHHHHHHCchHHHHHHhCcch-------------------HHHHHHHHHHHHhCCchhccceeccCCEeeCC
Confidence            99999999999999999999999998653                   78889999999999999998899999999999


Q ss_pred             eEecCCCEEeecchhhccCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHhcCeeeeec
Q 012199          365 YKIVKGWSINLDVVSIHHDPGIFANPEKFDPSRFDAPIKTFSFLGFGSGPRMCPGINLAKLEICIFIHHLVCRYKWRALE  444 (468)
Q Consensus       365 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~l~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~  444 (468)
                      +.||||+.|+++++++||||++|+||++|||+||.     ..|+|||+|+|.|+|+.||+.|++++++.++++|++....
T Consensus       312 ~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~-----~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~  386 (411)
T COG2124         312 YRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN-----NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLA  386 (411)
T ss_pred             EEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC-----CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcC
Confidence            99999999999999999999999999999999996     8999999999999999999999999999999999987766


Q ss_pred             CCCCCCcccccCCCCCcceeee
Q 012199          445 KDDSVQPTLVRMPRNKYPIAVE  466 (468)
Q Consensus       445 ~~~~~~~~~~~~p~~~~~~~~~  466 (468)
                      +........+..|..+..+.++
T Consensus       387 ~~~~~~~~~~~~~~g~~~l~v~  408 (411)
T COG2124         387 EPPPLVRRPTLVPRGGERLPVR  408 (411)
T ss_pred             CCCCccccccccCCCcceeeee
Confidence            5222333555666666655554


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=64.19  E-value=5.5  Score=25.72  Aligned_cols=8  Identities=38%  Similarity=0.688  Sum_probs=6.0

Q ss_pred             CCCCCCCC
Q 012199          394 DPSRFDAP  401 (468)
Q Consensus       394 ~P~R~l~~  401 (468)
                      ||||||.-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            78888763


No 34 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=58.57  E-value=3.1  Score=33.36  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCchHH
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGINL  422 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~~~  422 (468)
                      .+|+|++|-+     +.++.+.+-|..|+=.|-|.+=
T Consensus        35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaKs   71 (185)
T COG2101          35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAKS   71 (185)
T ss_pred             CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccCc
Confidence            4799999976     5677899999999999999763


No 35 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=46.41  E-value=18  Score=27.90  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=17.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhc
Q 012199          415 RMCPGINLAKLEICIFIHHLVCR  437 (468)
Q Consensus       415 r~C~G~~~a~~~~~~~l~~ll~~  437 (468)
                      -.|.|++||+.++-.++..|+..
T Consensus        18 yN~~gKKFsE~QiN~FIs~lIts   40 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITS   40 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS
T ss_pred             ecccchHHHHHHHHHHHHHHhcC
Confidence            38999999999999999999875


No 36 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=44.60  E-value=24  Score=22.65  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=18.1

Q ss_pred             HHHHHHhhChHHHHHHHHHHHHH
Q 012199          292 WLIKFIEENPAVLQKLREEHREI  314 (468)
Q Consensus       292 ~~l~~L~~~p~~~~~lr~Ei~~~  314 (468)
                      -.+.+|.+||++.+++.+.-.+.
T Consensus         4 ~iV~YLv~nPevl~kl~~g~asL   26 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEGEASL   26 (57)
T ss_pred             HHHHHHHHChHHHHHHHcCCeeE
Confidence            46789999999999998764443


No 37 
>PF14459 Prok-E2_C:  Prokaryotic E2 family C
Probab=41.05  E-value=14  Score=26.91  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=15.2

Q ss_pred             CccccccCCCCCCCCchH
Q 012199          404 TFSFLGFGSGPRMCPGIN  421 (468)
Q Consensus       404 ~~~~~~Fg~G~r~C~G~~  421 (468)
                      ....+|||.|.-.|+|..
T Consensus       104 gss~~p~GaGaAaC~aAa  121 (131)
T PF14459_consen  104 GSSNNPFGAGAAACFAAA  121 (131)
T ss_pred             CcccCCcCccHHHHHHHH
Confidence            467899999999999753


No 38 
>PHA01327 hypothetical protein
Probab=40.95  E-value=17  Score=21.09  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=16.6

Q ss_pred             cCCCccccCChhHHHHHHHhhh
Q 012199          108 LGPTSLLQTNGEAHKRLRRLIA  129 (468)
Q Consensus       108 ~g~~~~~~~~g~~~~~~R~~~~  129 (468)
                      ...+++++.+|+.|+++|.-+.
T Consensus         9 tkr~~vinehge~wqer~drmk   30 (49)
T PHA01327          9 TKRNNVINEHGEEWQERKDRMK   30 (49)
T ss_pred             cccchHHHhhHHHHHHHHHHHH
Confidence            3447788889999999876553


No 39 
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.87  E-value=11  Score=31.02  Aligned_cols=50  Identities=20%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCch-HHHHHH-HHHHHHHHHhcCee
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGI-NLAKLE-ICIFIHHLVCRYKW  440 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~-~~a~~~-~~~~l~~ll~~f~~  440 (468)
                      -+|+||||-.     ..++...+-|+.|+=.|-|. ...... ..--++.+|++..+
T Consensus        29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~   85 (179)
T PLN00062         29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF   85 (179)
T ss_pred             CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence            5899999965     45567889999999999985 222221 22334455666555


No 40 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=39.84  E-value=25  Score=29.56  Aligned_cols=44  Identities=18%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             CChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEee
Q 012199          331 NMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINL  375 (468)
Q Consensus       331 ~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~  375 (468)
                      .-..+.|||.|+.-...-.. +-=+..+|+.++|..|||||.|..
T Consensus        51 ~~n~I~A~V~~~qtv~~Gs~-vrlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDGSR-VRLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCCCE-EEEEEcCceEECCEEeCCCCEEEE
Confidence            34556688988876543222 322456889999999999998765


No 41 
>PRK06789 flagellar motor switch protein; Validated
Probab=37.38  E-value=47  Score=22.72  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=31.0

Q ss_pred             HHHhhhcCCCCCcc-cccccCcc--ceecCeEecCCCEEeecc
Q 012199          338 VISETLRRATILPW-FSRKAAQD--FEIEGYKIVKGWSINLDV  377 (468)
Q Consensus       338 ~i~E~lRl~~~~~~-~~R~~~~d--~~i~g~~ip~g~~v~~~~  377 (468)
                      -++|.+.+.+.... +-|.+.++  +.++|..|.+|..|.++-
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~~   63 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNG   63 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEECC
Confidence            47899999877653 66777665  457999999999998753


No 42 
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.36  E-value=11  Score=31.03  Aligned_cols=51  Identities=25%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCchH-H--HHHHHHHHHHHHHhcCeeee
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGIN-L--AKLEICIFIHHLVCRYKWRA  442 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~~-~--a~~~~~~~l~~ll~~f~~~~  442 (468)
                      -+|+||+|-.     ..++...+-|+.|+=.|-|.. .  |..-+ --++.+|++..+..
T Consensus        29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~-~~i~~~L~~~g~~~   87 (174)
T cd04516          29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAA-RKYARIIQKLGFPA   87 (174)
T ss_pred             CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHH-HHHHHHHHHcCCCC
Confidence            6899999965     345667899999999999832 2  22222 23345566665543


No 43 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=35.92  E-value=70  Score=24.70  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhCCceeeecCCceEEEEcChhhhhhhhcCCC
Q 012199           53 YSFVKERQQRYGKVFKTYTLGRFSVIMTGREASKILLTGKD   93 (468)
Q Consensus        53 ~~~~~~~~~~yG~v~~~~~~~~~~vvv~dp~~~~~i~~~~~   93 (468)
                      ...+.+|.++||.+-...  +...+...|++.++++...+.
T Consensus        77 ~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~~  115 (129)
T PF13625_consen   77 EQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADPE  115 (129)
T ss_pred             HHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhChh
Confidence            456789999999764432  466777899999999987664


No 44 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=34.48  E-value=1.1e+02  Score=18.83  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhChHHHHHHHHHH
Q 012199          270 QLKDNILTLLVAGHDTTTAALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       270 ~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      ++...+..++-.|.|..+-.+.-.+...--||+....+-.|+
T Consensus         6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            556666777777777777777777777778898887776664


No 45 
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.45  E-value=80  Score=22.01  Aligned_cols=60  Identities=15%  Similarity=0.283  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCChhhhc---CChhHHHHHHhhhcCCCCCccc--ccccCccceecCe
Q 012199          302 AVLQKLREEHREIQANRNGGSNLTWSEVN---NMPYTTKVISETLRRATILPWF--SRKAAQDFEIEGY  365 (468)
Q Consensus       302 ~~~~~lr~Ei~~~~~~~~~~~~~~~~~l~---~lp~l~a~i~E~lRl~~~~~~~--~R~~~~d~~i~g~  365 (468)
                      +.|.++.+.+..+.    .+...|+.++.   ..|---..|--.++-+|....+  -|++..+-.++||
T Consensus         2 ~f~~~V~~~l~~IP----~G~v~TYg~iA~~~g~p~~~RaVg~al~~np~~~~iPcHRVv~s~G~l~~y   66 (80)
T TIGR00589         2 PFQQRVWQALRTIP----YGETKSYGQLAARIGNPKAVRAVGGANGRNPLAILVPCHRVIGKNGSLTGY   66 (80)
T ss_pred             hHHHHHHHHHhCCC----CCCcCCHHHHHHHhCCCChHHHHHHHHHhCCCCCCCCCceeECCCCCCCCC
Confidence            45667777776653    36677888874   3444556677778877765444  4888888888876


No 46 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=30.74  E-value=23  Score=22.22  Aligned_cols=11  Identities=45%  Similarity=0.951  Sum_probs=9.1

Q ss_pred             cccCCCCCCCC
Q 012199          408 LGFGSGPRMCP  418 (468)
Q Consensus       408 ~~Fg~G~r~C~  418 (468)
                      -+||-|.|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            37999999984


No 47 
>PF11138 DUF2911:  Protein of unknown function (DUF2911);  InterPro: IPR021314  This bacterial family of proteins has no known function. 
Probab=30.21  E-value=58  Score=25.79  Aligned_cols=41  Identities=22%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             cCccceecCeEecCCCEEeecchh-------hccCCCCCCCCCCCCCCC
Q 012199          356 AAQDFEIEGYKIVKGWSINLDVVS-------IHHDPGIFANPEKFDPSR  397 (468)
Q Consensus       356 ~~~d~~i~g~~ip~g~~v~~~~~~-------~~~d~~~~~~p~~f~P~R  397 (468)
                      ..+|+.++|..||+|+--+.....       +|.+-..|.. ..+||+.
T Consensus        52 f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~~   99 (145)
T PF11138_consen   52 FSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPSK   99 (145)
T ss_pred             ECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCchh
Confidence            357899999999999876655543       4677777754 5566654


No 48 
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=27.41  E-value=94  Score=20.74  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhChHHHHHHHHHH
Q 012199          287 TAALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       287 ~~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      ....+-++--++++||.+.+++.-.
T Consensus        20 G~v~~~a~e~iaRqPE~~~~i~~~m   44 (66)
T PRK13467         20 GFLMANLFKSAARQPEMIGQLRSLM   44 (66)
T ss_pred             HHHHHHHHHHHHcChhHHHhHHHHH
Confidence            4555668888999999999998753


No 49 
>COG4383 Mu-like prophage protein gp29 [Function unknown]
Probab=26.81  E-value=1.3e+02  Score=28.07  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             cCChhHHHHHHhhhcCCCCCcccccccCccceecCeEecCCCEEeecchhhccCCCCC-CCCCCCCCCCCCCCCCCcccc
Q 012199          330 NNMPYTTKVISETLRRATILPWFSRKAAQDFEIEGYKIVKGWSINLDVVSIHHDPGIF-ANPEKFDPSRFDAPIKTFSFL  408 (468)
Q Consensus       330 ~~lp~l~a~i~E~lRl~~~~~~~~R~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~l~~~~~~~~~  408 (468)
                      .++|.++.+|...+---..  ++.-.--+-..++|..+|++        ..|||+..| -|++.=.--|--+.+....+.
T Consensus       112 e~~~~~edmifD~~DAv~~--Gfs~~EiE~~~~ggl~l~rn--------~~~R~~~wF~~~~~d~~~Lr~rd~peG~~l~  181 (517)
T COG4383         112 ESLPWLEDMIFDLTDAVGH--GFSCLEIEWGFSGGLYLPRN--------FIHRPQGWFKWDKDDGLLLRLRDNPEGEALW  181 (517)
T ss_pred             hccchHHHHHHHHHHHHhc--CcceeeeehhhcCceeechh--------eeccCcccccccccccceeecccCCcchhhc
Confidence            4777788888776653322  23222233455789999986        568888877 455443333433444557788


Q ss_pred             ccCCCC
Q 012199          409 GFGSGP  414 (468)
Q Consensus       409 ~Fg~G~  414 (468)
                      |||+=.
T Consensus       182 ~fGWvv  187 (517)
T COG4383         182 PFGWVV  187 (517)
T ss_pred             ccceeE
Confidence            998753


No 50 
>PF11227 DUF3025:  Protein of unknown function (DUF3025);  InterPro: IPR021390  Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function. 
Probab=25.95  E-value=41  Score=28.42  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=18.9

Q ss_pred             chhhccCCCCCCCCCCCCCCC
Q 012199          377 VVSIHHDPGIFANPEKFDPSR  397 (468)
Q Consensus       377 ~~~~~~d~~~~~~p~~f~P~R  397 (468)
                      .+.-|.|+.+|.|...|.|-|
T Consensus       191 W~~~n~~~~FY~d~~~FRp~R  211 (212)
T PF11227_consen  191 WWPDNEDPAFYDDTDVFRPGR  211 (212)
T ss_pred             CCCCCCCcccccCccccCCCC
Confidence            566699999999999999988


No 51 
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.50  E-value=23  Score=29.08  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=25.3

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCch
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGI  420 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~  420 (468)
                      -+|+|+||-.     ..++-..+-|+.|+=.|.|.
T Consensus        29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa   63 (174)
T cd04518          29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA   63 (174)
T ss_pred             cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence            5899999965     45667899999999999987


No 52 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=24.31  E-value=81  Score=24.43  Aligned_cols=6  Identities=50%  Similarity=0.933  Sum_probs=2.5

Q ss_pred             ccccch
Q 012199           34 PIVGES   39 (468)
Q Consensus        34 p~lG~~   39 (468)
                      |+-|+.
T Consensus        33 P~~gt~   38 (130)
T PF12273_consen   33 PIYGTR   38 (130)
T ss_pred             CcCCce
Confidence            344443


No 53 
>PF09926 DUF2158:  Uncharacterized small protein (DUF2158);  InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function. 
Probab=23.56  E-value=65  Score=20.37  Aligned_cols=17  Identities=18%  Similarity=0.173  Sum_probs=15.0

Q ss_pred             hCCceeeecCCceEEEE
Q 012199           63 YGKVFKTYTLGRFSVIM   79 (468)
Q Consensus        63 yG~v~~~~~~~~~~vvv   79 (468)
                      -|++++++-||+.+.|.
T Consensus         3 ~GDvV~LKSGGp~MTV~   19 (53)
T PF09926_consen    3 IGDVVQLKSGGPRMTVT   19 (53)
T ss_pred             CCCEEEEccCCCCeEEE
Confidence            38999999999998887


No 54 
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=23.02  E-value=1.2e+02  Score=19.56  Aligned_cols=24  Identities=13%  Similarity=0.068  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhhChHHHHHHHHHH
Q 012199          288 AALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       288 ~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      ...+.++--+++|||...+++.-.
T Consensus        11 ~i~~~a~~~iaRqPe~~~~l~~~~   34 (58)
T TIGR01260        11 ILGGKFLESAARQPELKPLLRTTM   34 (58)
T ss_pred             HHHHHHHHHHHcChhHHHhHHHHH
Confidence            445567788999999999988653


No 55 
>PRK00394 transcription factor; Reviewed
Probab=22.53  E-value=50  Score=27.31  Aligned_cols=30  Identities=27%  Similarity=0.559  Sum_probs=25.1

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCch
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGI  420 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~  420 (468)
                      -+|+|+||-.     ..++...+-|..|+=.|.|.
T Consensus        28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa   62 (179)
T PRK00394         28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA   62 (179)
T ss_pred             ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence            5899999965     45667899999999999993


No 56 
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=22.45  E-value=1.3e+02  Score=20.06  Aligned_cols=25  Identities=12%  Similarity=0.091  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhChHHHHHHHHHH
Q 012199          287 TAALTWLIKFIEENPAVLQKLREEH  311 (468)
Q Consensus       287 ~~~l~~~l~~L~~~p~~~~~lr~Ei  311 (468)
                      ....+-++.-++++||.+.+++.-.
T Consensus        20 G~~~~~~~e~vaRqPea~~~l~~~~   44 (66)
T PRK13466         20 GLLVASYLSSTARQPEMQSKLMAGV   44 (66)
T ss_pred             HHHHHHHHHHHHcChhHHHhHHHHH
Confidence            3455667888999999999998754


No 57 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=21.92  E-value=1.5e+02  Score=17.18  Aligned_cols=11  Identities=27%  Similarity=0.676  Sum_probs=8.7

Q ss_pred             hChHHHHHHHH
Q 012199          299 ENPAVLQKLRE  309 (468)
Q Consensus       299 ~~p~~~~~lr~  309 (468)
                      +||++++.++.
T Consensus        25 ~HPei~~~i~~   35 (38)
T PF14483_consen   25 RHPEIQQEIRS   35 (38)
T ss_dssp             HSTHHHHHHHT
T ss_pred             hChhHHHHHHh
Confidence            89999887664


No 58 
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.66  E-value=80  Score=26.00  Aligned_cols=51  Identities=22%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCch---HHHHHHHHHHHHHHHhcCeeee
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGI---NLAKLEICIFIHHLVCRYKWRA  442 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~---~~a~~~~~~~l~~ll~~f~~~~  442 (468)
                      -+|+||||-.     ..++-..+-|+.|+=.|-|.   .=|..-++ -++.+|++.++..
T Consensus        29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~-~~~~~L~~~g~~~   87 (174)
T cd00652          29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAAR-KYARILQKLGFPV   87 (174)
T ss_pred             cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHH-HHHHHHHHcCCCc
Confidence            5899999865     45667899999999999994   22223332 3334455555543


No 59 
>PHA03162 hypothetical protein; Provisional
Probab=21.50  E-value=61  Score=24.78  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHH
Q 012199          411 GSGPRMCPGINLAKLEICIFIHHL  434 (468)
Q Consensus       411 g~G~r~C~G~~~a~~~~~~~l~~l  434 (468)
                      ++|.+.|||+...+-++..=|+.|
T Consensus         2 ~~~~k~~pk~~~tmEeLaaeL~kL   25 (135)
T PHA03162          2 AGGSKKCPKAQPTMEDLAAEIAKL   25 (135)
T ss_pred             CCCcCCCCccCCCHHHHHHHHHHH
Confidence            569999999999988887777766


No 60 
>PF14550 Peptidase_U35_2:  Putative phage protease XkdF
Probab=21.24  E-value=61  Score=24.79  Aligned_cols=22  Identities=36%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             cccCccceecCeEecCCCEEee
Q 012199          354 RKAAQDFEIEGYKIVKGWSINL  375 (468)
Q Consensus       354 R~~~~d~~i~g~~ip~g~~v~~  375 (468)
                      -++++|.+++|-.||+|+.|..
T Consensus        71 ~I~~~d~~~~g~~i~~GtWv~~   92 (122)
T PF14550_consen   71 YIAPEDMEIGGETIPKGTWVVG   92 (122)
T ss_pred             EecCCCcccCCeeecceEEEEE
Confidence            4667799999999999999854


No 61 
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.79  E-value=42  Score=27.75  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             CCCCCCCCCC-----CCCCccccccCCCCCCCCch-----------HHHHHHHHHHHHHHHhcCeeee
Q 012199          391 EKFDPSRFDA-----PIKTFSFLGFGSGPRMCPGI-----------NLAKLEICIFIHHLVCRYKWRA  442 (468)
Q Consensus       391 ~~f~P~R~l~-----~~~~~~~~~Fg~G~r~C~G~-----------~~a~~~~~~~l~~ll~~f~~~~  442 (468)
                      -+|+|.||-.     ..+...-.-|++|+=.|-|.           ++|+..-++....-+++|++.-
T Consensus        50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA~se~~ar~aark~aRilqkLgf~~~f~~fki~n  117 (200)
T KOG3302|consen   50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGAKSEDSARLAARKYARILQKLGFPVKFRDFKINN  117 (200)
T ss_pred             cccCcccccEEEEEEcCCceEEEEecCCcEEEeccCCHHHHHHHHHHHHHHHHHcCCCceehheeeEE
Confidence            5799999865     34556778899999999974           4444444444444455555543


No 62 
>PRK05933 type III secretion system protein; Validated
Probab=20.21  E-value=1.1e+02  Score=27.86  Aligned_cols=44  Identities=20%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             hHHHHHHhhhcCCCCCcc-ccccc-Cc--cceecCeEecCCCEEeecc
Q 012199          334 YTTKVISETLRRATILPW-FSRKA-AQ--DFEIEGYKIVKGWSINLDV  377 (468)
Q Consensus       334 ~l~a~i~E~lRl~~~~~~-~~R~~-~~--d~~i~g~~ip~g~~v~~~~  377 (468)
                      -..--|+|.++|.+.... +-|.+ .+  |+.++|..|.+|..|+++-
T Consensus       316 RT~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVdd  363 (372)
T PRK05933        316 RYSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALGD  363 (372)
T ss_pred             cccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEECC
Confidence            345569999999987664 44554 34  5678999999999998863


Done!