BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012200
         (468 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KM1|A Chain A, Solution Structure Of The N-Terminal Domain Of The Yeast
           Protein Dre2
          Length = 136

 Score = 30.0 bits (66), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 300 GADDSAHFRDSLLYNRLISGDIVWDKAINVRGHHVRPYIVGDWCYP--LLSFLMTPFSPN 357
            A     F D  L N+L  G I  + A     H++ P    D  +P  L+S L     PN
Sbjct: 32  AASKKVKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPN 91

Query: 358 GA 359
           G+
Sbjct: 92  GS 93


>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
           Coli
 pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
           Bestatin
 pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
           Inhibitor Of Pl250, A Transition State Analogue
          Length = 870

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 152 EKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211
           EK+ P +AA  L+LPS   +A +                  ++P  I+++   +TR LAT
Sbjct: 606 EKIDPALAAEILTLPSVNEMAELFD---------------IIDPIAIAEVREALTRTLAT 650

Query: 212 KLYPEFIKI 220
           +L  E + I
Sbjct: 651 ELADELLAI 659


>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
           Aminopeptidase N
          Length = 891

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 152 EKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211
           EK+ P +AA  L+LPS   +A +                  ++P  I+++   +TR LAT
Sbjct: 627 EKIDPALAAEILTLPSVNEMAELFD---------------IIDPIAIAEVREALTRTLAT 671

Query: 212 KLYPEFIKI 220
           +L  E + I
Sbjct: 672 ELADELLAI 680


>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
           Compartmentalized, Gated Active Site
 pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
           Complex With Bestatin
 pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
           Diaminobutyric Acid
 pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With Arginine
 pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With Lysine
 pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With Phenylalanine
 pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With Tyrosine
 pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With Tryptophan
 pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
           With L-Serine
          Length = 891

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 152 EKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211
           EK+ P +AA  L+LPS   +A +                  ++P  I+++   +TR LAT
Sbjct: 627 EKIDPALAAEILTLPSVNEMAELFD---------------IIDPIAIAEVREALTRTLAT 671

Query: 212 KLYPEFIKI 220
           +L  E + I
Sbjct: 672 ELADELLAI 680


>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
           With Alpha-Naphthoflavone
          Length = 495

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 409 CCVLHNLCQIAREPEPEIWKEPDENGTPARVLESE---------KQFYYFGEGLRQALAD 459
           CCV  N  Q+  +PE  +W++P E   P R L ++         ++   FG G R+ + +
Sbjct: 381 CCVFVNQWQVNHDPE--LWEDPSE-FRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGE 437

Query: 460 DL 461
            L
Sbjct: 438 VL 439


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,497,155
Number of Sequences: 62578
Number of extensions: 471045
Number of successful extensions: 997
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 7
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)