BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012200
(468 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 31/226 (13%)
Query: 198 ISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDGSHIKIGNG 257
+S+ + VT+ L K PEFI + F + +PN+ G +D +HI I
Sbjct: 100 MSRCVSNVTKALIEKA-PEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAI--- 155
Query: 258 KLKHVSLNQNQYRCKYGYNSVLLQVVADHRKIFWDVCVKASGGADDSAHFRDS---LLYN 314
K + + + Y K G++S+ Q+V D R + G D A F+ S L+
Sbjct: 156 --KAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFE 213
Query: 315 RLISGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPF-SPNGAGTPAQNLFDGMLMK 373
+ D W ++GD YPL +LMTP SP +PA ++
Sbjct: 214 EQENDDEGW--------------LLGDNRYPLKKWLMTPVQSPE---SPADYRYNLAHTT 256
Query: 374 GRNVVVEAIGLLKARWKILKDLNVGINHAPQT----IVACCVLHNL 415
+V ++ R++ L + ++P+ I ACCVLHN+
Sbjct: 257 THEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNI 302
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 40/305 (13%)
Query: 138 SLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAM-----VLSRLAH---GLSAKALAS 189
S+YG +VE L +NLS P+ + A+ VL+ L G +
Sbjct: 37 SMYGFPRQFIYYLVELL-----GANLSRPTQRSRAISPETQVLAALGFYTSGSFQTRMGD 91
Query: 190 RYSLEPYLISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDG 249
+ +S+ VT L + +FI+ P + F L +P + G +D
Sbjct: 92 AIGISQASMSRCVANVTEALVERA-SQFIRFPADEASIQALKDEFYGLAGMPGVMGVVDC 150
Query: 250 SHIKIGNGKLKHVSLNQNQYRCKYGYNSVLLQVVADHRKIFWDVCVKASGGADDSAHFRD 309
H+ I + +S Y + G +S+ +V D R V G D A +
Sbjct: 151 IHVAIKAPNAEDLS-----YVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQ 205
Query: 310 SLLYNRLISGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPFSPNGAGTPAQNLFDG 369
S L ++ +G H +++GD + L ++LMTP + TPA+ ++
Sbjct: 206 SSLSSQFEAG------------MHKDSWLLGDSSFFLRTWLMTPL--HIPETPAEYRYNM 251
Query: 370 MLMKGRNVVVEAIGLLKARWKILKDLNVGINHAPQ----TIVACCVLHNLCQIAREPEPE 425
+V+ + L +R++ L + ++P+ I+ACCVLHN I+ E +
Sbjct: 252 AHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHN---ISLEHGMD 308
Query: 426 IWKEP 430
+W P
Sbjct: 309 VWSSP 313
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 27/237 (11%)
Query: 198 ISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDGSHIKIGNG 257
+S+ VT L + +FI P + F L +P + G +D H+ I
Sbjct: 100 MSRCVANVTEALVERA-SQFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAP 158
Query: 258 KLKHVSLNQNQYRCKYGYNSVLLQVVADHRKIFWDVCVKASGGADDSAHFRDSLLYNRLI 317
+ +S Y + G +S+ +V D R V G D + S L ++
Sbjct: 159 NAEDLS-----YVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFE 213
Query: 318 SGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPFSPNGAGTPAQNLFDGMLMKGRNV 377
+G H +++GD + L ++LMTP + TPA+ ++ +V
Sbjct: 214 AG------------MHKESWLLGDSSFFLRTWLMTPL--HIPETPAEYRYNMAHSATHSV 259
Query: 378 VVEAIGLLKARWKILKDLNVGINHAPQ----TIVACCVLHNLCQIAREPEPEIWKEP 430
+ + L +R++ L + ++P+ I+ACCVLHN I+ E ++W P
Sbjct: 260 IEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHN---ISLEHGMDVWSSP 313
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 27/237 (11%)
Query: 198 ISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDGSHIKIGNG 257
+S+ VT L + +FI P + F L +P + GA+D H+ I
Sbjct: 100 MSRCVANVTEALVERA-SQFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAP 158
Query: 258 KLKHVSLNQNQYRCKYGYNSVLLQVVADHRKIFWDVCVKASGGADDSAHFRDSLLYNRLI 317
+ +S Y + G +S+ VV D R V G D A + S L ++
Sbjct: 159 NAEDLS-----YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFE 213
Query: 318 SGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPFSPNGAGTPAQNLFDGMLMKGRNV 377
+G + D +++GD + L ++L+TP + TPA+ ++ +V
Sbjct: 214 TG-MPKDS-----------WLLGDSSFFLHTWLLTPL--HIPETPAEYRYNRAHSATHSV 259
Query: 378 VVEAIGLLKARWKILKDLNVGINHAPQ----TIVACCVLHNLCQIAREPEPEIWKEP 430
+ + + L R++ L + ++P+ I+ACCVLHN I+ E ++W P
Sbjct: 260 IEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHN---ISLEHGMDVWSSP 313
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 198 ISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDGSHIKIGNG 257
+S+ VT L + +FI P+ + F L +P + G D H+ I
Sbjct: 100 MSRCVANVTEALVERA-SQFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAP 158
Query: 258 KLKHVSLNQNQYRCKYGYNSVLLQVVADHRKIFWDVCVKASGGADDSAHFRDSLLYNRLI 317
+ +S Y + G +S+ VV D R V G D A + S L ++
Sbjct: 159 NAEDLS-----YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFE 213
Query: 318 SGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPFS-PNGAGTPAQNLFDGMLMKGRN 376
+G + D +++GD + L S+L+TP P T A+ ++ +
Sbjct: 214 TG-MPKDS-----------WLLGDSSFFLRSWLLTPLPIPE---TAAEYRYNRAHSATHS 258
Query: 377 VVVEAIGLLKARWKILKDLNVGINHAPQ----TIVACCVLHNLCQIAREPEPEIWKEP 430
V+ + L R++ L + ++P+ I+ACCVLHN I+ + ++W P
Sbjct: 259 VIERTLQTLCCRFRCLDGSKGALQYSPEKCSHIILACCVLHN---ISLDHGMDVWSSP 313
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 38/259 (14%)
Query: 198 ISKITNMVTRLLATKLYPEFIKIPISRRRLIETTQGFEELTSLPNICGAIDGSHIKIGNG 257
+S+ VT L + +FI P R + F L +P + G +D + + I
Sbjct: 100 MSRCVTNVTEALVERA-SQFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAP 158
Query: 258 KLKHVSLNQNQYRCKYGYNSVLLQVVADHR-KIFWDVCVKASGGADDSAHFRDSLLYNRL 316
+ +S Y G +S+ +V D R + W + G D+A +L+
Sbjct: 159 NSEDLS-----YVNSRGLHSLNCLLVCDARGSLLWAETSRL-GSMQDNA-----VLHQSE 207
Query: 317 ISGDIVWDKAINVRGHHVRPYIVGDWCYPLLSFLMTPFS-PNGAGTPAQNLFDGMLMKGR 375
+SG +++ ++ +G +++ D + L +LMTP P +P+ ++
Sbjct: 208 LSG--LFETKMHKQG-----WLLADNAFILRPWLMTPVQIPE---SPSDYRYNMAHTATH 257
Query: 376 NVVVEAIGLLKARWKILKDLNVGINHAP----QTIVACCVLHNLCQIAREPEPEIWK--- 428
+V+ L+ R++ L + ++P Q ++ACC+LHN IA + + +I
Sbjct: 258 SVMERTQRSLRLRFRCLDGSRATLQYSPEKSAQIVLACCILHN---IALQHDLDIVSESG 314
Query: 429 ----EPDENGTPARVLESE 443
EP+E LESE
Sbjct: 315 ATSLEPEEECVHMEPLESE 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,527,616
Number of Sequences: 539616
Number of extensions: 6647414
Number of successful extensions: 35794
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 27536
Number of HSP's gapped (non-prelim): 5455
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)