Query 012200
Match_columns 468
No_of_seqs 213 out of 1678
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w7n_A TRFB transcriptional re 94.5 0.069 2.4E-06 43.6 6.2 60 141-210 4-63 (101)
2 1tc3_C Protein (TC3 transposas 94.4 0.052 1.8E-06 36.9 4.6 40 163-203 4-43 (51)
3 2p7v_B Sigma-70, RNA polymeras 93.3 0.11 3.8E-06 38.6 4.9 48 164-211 5-55 (68)
4 2o8x_A Probable RNA polymerase 93.1 0.24 8.2E-06 36.5 6.6 48 164-212 15-62 (70)
5 2glo_A Brinker CG9653-PA; prot 93.1 0.091 3.1E-06 38.1 4.0 42 163-205 4-49 (59)
6 1tty_A Sigma-A, RNA polymerase 92.3 0.16 5.3E-06 39.9 4.8 49 164-212 18-69 (87)
7 1ku3_A Sigma factor SIGA; heli 92.3 0.23 8E-06 37.3 5.6 47 164-210 10-59 (73)
8 2jn6_A Protein CGL2762, transp 91.9 0.19 6.5E-06 40.1 4.8 43 163-205 4-47 (97)
9 3hug_A RNA polymerase sigma fa 91.5 0.29 9.9E-06 38.6 5.5 49 164-213 37-85 (92)
10 3t72_q RNA polymerase sigma fa 90.1 0.43 1.5E-05 38.7 5.3 49 164-212 19-70 (99)
11 1jhg_A Trp operon repressor; c 90.0 0.25 8.5E-06 40.3 3.8 43 165-208 36-84 (101)
12 1wy3_A Villin; structural prot 89.7 0.16 5.6E-06 33.0 2.0 20 131-150 1-20 (35)
13 2elh_A CG11849-PA, LD40883P; s 89.4 0.39 1.3E-05 37.6 4.5 44 163-207 21-64 (87)
14 1jko_C HIN recombinase, DNA-in 88.9 0.26 9E-06 33.7 2.8 29 175-203 15-43 (52)
15 1fse_A GERE; helix-turn-helix 88.6 0.7 2.4E-05 34.3 5.3 46 163-210 10-55 (74)
16 1und_A Advillin, P92; actin bi 88.5 0.22 7.5E-06 32.9 2.0 21 130-150 2-22 (37)
17 1hlv_A CENP-B, major centromer 87.9 0.56 1.9E-05 39.2 4.8 48 162-209 5-53 (131)
18 3c57_A Two component transcrip 87.8 0.73 2.5E-05 36.6 5.2 45 164-210 27-71 (95)
19 1p4w_A RCSB; solution structur 87.0 1.3 4.5E-05 35.6 6.3 62 146-210 17-78 (99)
20 2x48_A CAG38821; archeal virus 87.0 0.44 1.5E-05 33.5 3.1 26 178-203 28-53 (55)
21 1je8_A Nitrate/nitrite respons 86.6 0.82 2.8E-05 35.3 4.7 45 164-210 21-65 (82)
22 2jrt_A Uncharacterized protein 86.0 0.83 2.8E-05 36.7 4.5 43 163-205 31-73 (95)
23 1s7o_A Hypothetical UPF0122 pr 85.9 1.1 3.7E-05 37.1 5.3 48 164-212 22-69 (113)
24 1rp3_A RNA polymerase sigma fa 85.3 0.98 3.3E-05 41.2 5.4 50 163-213 186-235 (239)
25 1pdn_C Protein (PRD paired); p 85.3 1 3.4E-05 36.8 4.9 43 163-206 16-58 (128)
26 2jpc_A SSRB; DNA binding prote 84.9 0.7 2.4E-05 33.0 3.3 33 178-210 10-42 (61)
27 1k78_A Paired box protein PAX5 84.4 1.1 3.8E-05 38.3 4.9 44 163-207 31-74 (149)
28 3ech_A MEXR, multidrug resista 84.4 2 6.8E-05 36.0 6.5 73 130-207 4-77 (142)
29 1x3u_A Transcriptional regulat 84.3 1 3.5E-05 33.9 4.2 44 165-210 17-60 (79)
30 1qzp_A Dematin; villin headpie 84.1 0.46 1.6E-05 35.7 2.0 26 126-151 29-54 (68)
31 1j1v_A Chromosomal replication 83.8 1.2 4.2E-05 35.6 4.6 48 163-210 28-76 (94)
32 2rn7_A IS629 ORFA; helix, all 83.8 0.74 2.5E-05 37.2 3.4 43 163-205 5-54 (108)
33 1or7_A Sigma-24, RNA polymeras 83.7 1.5 5.1E-05 38.7 5.7 49 164-213 140-188 (194)
34 1u78_A TC3 transposase, transp 83.7 1.1 3.8E-05 37.5 4.6 41 163-204 5-45 (141)
35 1iuf_A Centromere ABP1 protein 82.2 1.2 4E-05 38.4 4.2 48 161-208 8-63 (144)
36 3ulq_B Transcriptional regulat 81.9 1.9 6.5E-05 34.0 5.0 46 163-210 28-73 (90)
37 1yu8_X Villin; alpha helix, 3- 81.8 0.52 1.8E-05 35.3 1.5 26 126-151 28-53 (67)
38 1u78_A TC3 transposase, transp 81.6 5 0.00017 33.3 8.0 75 130-204 22-102 (141)
39 2rnj_A Response regulator prot 81.4 1 3.4E-05 35.4 3.2 45 164-210 29-73 (91)
40 3mzy_A RNA polymerase sigma-H 80.8 1.9 6.6E-05 36.6 5.1 48 164-213 109-156 (164)
41 2k6m_S Supervillin; SVHP, HP, 80.3 0.54 1.9E-05 35.2 1.1 25 126-150 28-52 (67)
42 1xsv_A Hypothetical UPF0122 pr 78.6 2.2 7.4E-05 35.1 4.5 48 165-213 26-73 (113)
43 3frw_A Putative Trp repressor 78.4 1.3 4.4E-05 36.3 2.9 30 175-204 52-81 (107)
44 2q1z_A RPOE, ECF SIGE; ECF sig 78.1 1.9 6.3E-05 37.8 4.2 47 164-211 135-181 (184)
45 3pvv_A Chromosomal replication 77.3 2.7 9.3E-05 34.0 4.6 48 164-211 33-80 (101)
46 1ujs_A Actin-binding LIM prote 77.1 0.64 2.2E-05 36.7 0.7 26 126-151 43-68 (88)
47 3kor_A Possible Trp repressor; 77.1 1.3 4.3E-05 37.1 2.5 32 172-203 66-97 (119)
48 2k27_A Paired box protein PAX- 76.9 1.9 6.6E-05 37.2 3.9 40 163-203 24-63 (159)
49 2l1p_A DNA-binding protein SAT 75.2 2 6.9E-05 33.3 3.0 32 171-202 22-53 (83)
50 1zyb_A Transcription regulator 74.0 6.9 0.00024 35.5 7.1 74 133-206 124-211 (232)
51 2lfw_A PHYR sigma-like domain; 73.4 3.1 0.0001 35.8 4.2 51 163-214 92-142 (157)
52 2d1h_A ST1889, 109AA long hypo 72.8 3 0.0001 32.8 3.7 28 179-206 34-61 (109)
53 3deu_A Transcriptional regulat 72.7 5.4 0.00018 34.5 5.7 43 164-206 50-93 (166)
54 2heo_A Z-DNA binding protein 1 71.7 4.4 0.00015 29.9 4.2 39 168-206 12-50 (67)
55 3la7_A Global nitrogen regulat 70.7 3.9 0.00014 37.5 4.6 76 132-207 124-219 (243)
56 1uxc_A FRUR (1-57), fructose r 69.6 2.1 7.1E-05 31.7 1.9 21 183-203 2-22 (65)
57 1qgp_A Protein (double strande 69.3 5.1 0.00017 30.5 4.2 39 168-206 16-56 (77)
58 2fbh_A Transcriptional regulat 69.2 6.4 0.00022 32.6 5.3 42 165-206 35-77 (146)
59 2qvo_A Uncharacterized protein 69.2 4 0.00014 32.0 3.7 36 171-206 17-55 (95)
60 3dv8_A Transcriptional regulat 68.9 2.6 9E-05 37.7 2.9 45 164-208 145-196 (220)
61 1oyi_A Double-stranded RNA-bin 68.5 4 0.00014 31.7 3.4 40 166-207 17-56 (82)
62 3szt_A QCSR, quorum-sensing co 67.9 8.2 0.00028 35.7 6.2 46 162-209 173-218 (237)
63 1zx4_A P1 PARB, plasmid partit 67.4 5.1 0.00017 36.3 4.4 39 166-204 9-47 (192)
64 3bja_A Transcriptional regulat 67.3 11 0.00037 30.8 6.3 43 164-207 30-73 (139)
65 3fm5_A Transcriptional regulat 67.2 8.1 0.00028 32.4 5.6 43 164-206 36-79 (150)
66 3u2r_A Regulatory protein MARR 67.1 11 0.00039 32.2 6.6 43 164-206 43-87 (168)
67 2pij_A Prophage PFL 6 CRO; tra 66.2 3.6 0.00012 29.7 2.6 26 176-202 9-34 (67)
68 2l0k_A Stage III sporulation p 65.9 3.6 0.00012 32.8 2.7 26 179-204 18-43 (93)
69 3ryp_A Catabolite gene activat 65.3 3.1 0.00011 36.9 2.5 44 164-207 137-193 (210)
70 2oz6_A Virulence factor regula 65.3 3.8 0.00013 36.2 3.1 43 164-206 134-189 (207)
71 3r0a_A Putative transcriptiona 65.2 5 0.00017 33.2 3.7 41 168-208 28-69 (123)
72 3k0l_A Repressor protein; heli 65.2 13 0.00045 31.6 6.6 42 164-206 43-85 (162)
73 1l9z_H Sigma factor SIGA; heli 65.2 6.3 0.00021 40.4 5.1 47 164-210 375-424 (438)
74 4aik_A Transcriptional regulat 64.9 6.8 0.00023 33.5 4.6 43 164-206 28-71 (151)
75 2cob_A LCOR protein; MLR2, KIA 64.7 6.6 0.00022 29.5 3.7 37 167-203 15-52 (70)
76 1ku9_A Hypothetical protein MJ 64.4 5.1 0.00018 33.3 3.7 42 165-206 24-66 (152)
77 2x4h_A Hypothetical protein SS 64.0 7.4 0.00025 32.3 4.6 40 168-207 15-57 (139)
78 2gxg_A 146AA long hypothetical 64.0 13 0.00044 30.7 6.1 41 164-206 34-75 (146)
79 2lkp_A Transcriptional regulat 63.7 9.8 0.00034 30.8 5.2 37 169-207 35-71 (119)
80 2pex_A Transcriptional regulat 63.5 12 0.0004 31.4 5.9 42 164-206 44-86 (153)
81 1qbj_A Protein (double-strande 63.2 9.4 0.00032 29.4 4.6 38 168-205 12-51 (81)
82 1tbx_A ORF F-93, hypothetical 62.9 8.7 0.0003 30.0 4.6 39 168-207 10-52 (99)
83 2oa4_A SIR5; structure, struct 62.9 6.5 0.00022 31.8 3.7 42 166-207 35-76 (101)
84 3e6c_C CPRK, cyclic nucleotide 62.7 5.9 0.0002 36.3 4.0 68 163-232 145-227 (250)
85 3iwz_A CAP-like, catabolite ac 62.7 6.1 0.00021 35.4 4.1 43 164-206 157-212 (230)
86 1l0o_C Sigma factor; bergerat 62.5 1.6 5.4E-05 39.8 0.0 43 164-207 198-240 (243)
87 3fx3_A Cyclic nucleotide-bindi 62.4 7.1 0.00024 35.3 4.5 45 163-207 150-204 (237)
88 1r1u_A CZRA, repressor protein 62.2 12 0.0004 29.8 5.3 37 169-207 29-65 (106)
89 1y0u_A Arsenical resistance op 61.8 6.5 0.00022 30.7 3.6 29 179-207 41-69 (96)
90 2a6h_F RNA polymerase sigma fa 61.8 6.9 0.00023 39.9 4.6 47 164-210 360-409 (423)
91 2fmy_A COOA, carbon monoxide o 61.7 2.9 0.0001 37.5 1.7 45 164-208 136-194 (220)
92 4b8x_A SCO5413, possible MARR- 61.6 13 0.00045 31.3 5.8 43 164-206 32-76 (147)
93 3d0s_A Transcriptional regulat 61.4 7.3 0.00025 34.9 4.4 76 132-207 108-203 (227)
94 2nnn_A Probable transcriptiona 60.4 18 0.00063 29.4 6.4 42 164-206 35-77 (140)
95 2htj_A P fimbrial regulatory p 59.6 11 0.00039 28.3 4.5 28 180-207 13-40 (81)
96 2jt1_A PEFI protein; solution 58.8 11 0.00036 28.9 4.1 27 179-205 22-48 (77)
97 4dyq_A Gene 1 protein; GP1, oc 58.7 5.3 0.00018 34.0 2.7 32 173-204 20-52 (140)
98 2bv6_A MGRA, HTH-type transcri 58.7 13 0.00045 30.6 5.2 42 165-207 35-77 (142)
99 3bro_A Transcriptional regulat 58.6 11 0.00037 31.0 4.7 43 164-206 31-75 (141)
100 3fmy_A HTH-type transcriptiona 58.5 6.2 0.00021 29.2 2.8 28 175-202 18-45 (73)
101 3g3z_A NMB1585, transcriptiona 58.4 15 0.00053 30.3 5.7 42 164-206 28-70 (145)
102 3eco_A MEPR; mutlidrug efflux 58.2 9.5 0.00033 31.4 4.2 44 164-207 28-73 (139)
103 2l8n_A Transcriptional repress 57.9 2.4 8.3E-05 31.5 0.3 21 182-202 10-30 (67)
104 3iyd_F RNA polymerase sigma fa 57.9 7.4 0.00025 41.6 4.3 49 163-211 549-600 (613)
105 2cw1_A SN4M; lambda CRO fold, 57.9 6 0.0002 29.2 2.5 21 182-202 14-34 (65)
106 2pg4_A Uncharacterized protein 57.8 8.4 0.00029 29.9 3.6 26 181-206 30-56 (95)
107 4hbl_A Transcriptional regulat 57.7 16 0.00056 30.5 5.7 43 164-207 38-81 (149)
108 3cuo_A Uncharacterized HTH-typ 57.4 11 0.00037 29.1 4.2 26 181-206 38-63 (99)
109 3hsr_A HTH-type transcriptiona 57.1 11 0.00037 31.3 4.4 42 164-206 33-75 (140)
110 1sfx_A Conserved hypothetical 57.0 14 0.00048 28.7 4.9 38 169-207 23-60 (109)
111 3clo_A Transcriptional regulat 56.8 11 0.00037 35.2 4.8 46 163-210 196-241 (258)
112 3m8j_A FOCB protein; all-alpha 56.4 30 0.001 28.3 6.7 56 142-206 30-85 (111)
113 3oop_A LIN2960 protein; protei 56.2 19 0.00064 29.7 5.8 42 164-206 34-76 (143)
114 2rdp_A Putative transcriptiona 56.0 20 0.00069 29.7 6.0 42 164-206 39-81 (150)
115 3kcc_A Catabolite gene activat 55.9 5.2 0.00018 37.2 2.4 44 164-207 187-243 (260)
116 1on2_A Transcriptional regulat 55.7 12 0.00041 31.2 4.5 27 180-206 21-47 (142)
117 1ft9_A Carbon monoxide oxidati 55.7 4.2 0.00014 36.6 1.6 45 164-208 132-190 (222)
118 4ev0_A Transcription regulator 55.3 4.1 0.00014 36.2 1.5 65 165-231 140-212 (216)
119 2q0o_A Probable transcriptiona 55.1 13 0.00044 34.2 4.9 46 163-210 174-219 (236)
120 3boq_A Transcriptional regulat 54.7 13 0.00044 31.4 4.6 43 165-207 45-88 (160)
121 2xi8_A Putative transcription 54.6 5.3 0.00018 28.2 1.7 26 177-202 10-35 (66)
122 2hr3_A Probable transcriptiona 54.5 14 0.00048 30.5 4.7 39 169-207 38-76 (147)
123 4ghj_A Probable transcriptiona 53.9 5.5 0.00019 32.0 1.9 34 169-202 35-70 (101)
124 2frh_A SARA, staphylococcal ac 53.6 14 0.00047 30.4 4.4 43 164-206 34-78 (127)
125 1z91_A Organic hydroperoxide r 53.6 22 0.00074 29.4 5.8 44 164-208 37-81 (147)
126 3jw4_A Transcriptional regulat 53.5 13 0.00045 30.9 4.4 44 164-207 38-83 (148)
127 2fbk_A Transcriptional regulat 53.4 19 0.00066 31.2 5.6 45 164-208 66-113 (181)
128 3dkw_A DNR protein; CRP-FNR, H 53.3 5.6 0.00019 35.6 2.1 44 165-208 151-205 (227)
129 3bpv_A Transcriptional regulat 53.3 18 0.0006 29.5 5.1 42 164-206 26-68 (138)
130 1l3l_A Transcriptional activat 53.3 15 0.00053 33.5 5.2 46 163-210 172-217 (234)
131 1zug_A Phage 434 CRO protein; 53.2 5.6 0.00019 28.6 1.7 26 177-202 12-37 (71)
132 3bj6_A Transcriptional regulat 53.1 15 0.00051 30.6 4.7 42 164-206 37-79 (152)
133 2w48_A Sorbitol operon regulat 53.1 12 0.00041 36.2 4.6 36 171-206 11-46 (315)
134 1p6r_A Penicillinase repressor 53.0 11 0.00036 28.5 3.3 42 164-206 6-52 (82)
135 2kko_A Possible transcriptiona 53.0 10 0.00035 30.4 3.4 38 169-208 28-65 (108)
136 2zcw_A TTHA1359, transcription 52.9 15 0.0005 32.3 4.8 64 164-229 116-193 (202)
137 3qq6_A HTH-type transcriptiona 52.9 7.3 0.00025 29.2 2.4 29 174-202 16-44 (78)
138 1r69_A Repressor protein CI; g 52.3 6 0.0002 28.3 1.7 26 177-202 10-35 (69)
139 2a61_A Transcriptional regulat 52.2 17 0.00058 29.9 4.8 41 165-206 31-72 (145)
140 3nrv_A Putative transcriptiona 51.9 18 0.00063 29.9 5.1 43 164-207 37-80 (148)
141 3eus_A DNA-binding protein; st 51.9 8 0.00027 29.5 2.5 26 177-202 23-48 (86)
142 2a6c_A Helix-turn-helix motif; 51.8 7.9 0.00027 29.3 2.4 27 176-202 26-52 (83)
143 3cdh_A Transcriptional regulat 51.8 15 0.0005 30.9 4.4 42 164-206 40-82 (155)
144 3bd1_A CRO protein; transcript 51.4 7.7 0.00026 29.0 2.3 24 179-203 10-33 (79)
145 2oqg_A Possible transcriptiona 51.2 13 0.00043 29.7 3.7 37 168-206 23-59 (114)
146 2fbi_A Probable transcriptiona 51.2 17 0.00058 29.7 4.7 41 165-206 34-75 (142)
147 2eth_A Transcriptional regulat 51.1 16 0.00056 30.6 4.6 42 165-207 42-84 (154)
148 3kp7_A Transcriptional regulat 50.9 13 0.00046 31.0 4.0 41 164-206 35-76 (151)
149 2dk5_A DNA-directed RNA polyme 50.8 12 0.00042 29.4 3.4 44 163-206 16-61 (91)
150 3omt_A Uncharacterized protein 50.3 5.9 0.0002 29.0 1.4 26 177-202 17-42 (73)
151 2wiu_B HTH-type transcriptiona 50.3 9.6 0.00033 28.7 2.7 28 176-203 20-47 (88)
152 1q1h_A TFE, transcription fact 50.2 17 0.0006 28.8 4.4 28 181-208 33-60 (110)
153 1lj9_A Transcriptional regulat 50.0 20 0.00068 29.5 4.9 41 165-206 27-68 (144)
154 3tgn_A ADC operon repressor AD 49.8 12 0.00041 31.0 3.5 41 164-206 35-76 (146)
155 2qww_A Transcriptional regulat 49.8 24 0.00081 29.4 5.4 42 164-206 38-80 (154)
156 3b02_A Transcriptional regulat 49.6 14 0.00048 32.2 4.1 65 164-230 109-187 (195)
157 2nyx_A Probable transcriptiona 49.6 23 0.00078 30.3 5.4 42 164-206 42-84 (168)
158 3s2w_A Transcriptional regulat 49.5 20 0.00069 30.2 5.0 38 168-206 52-89 (159)
159 1s3j_A YUSO protein; structura 49.5 22 0.00074 29.7 5.1 42 164-206 34-76 (155)
160 3mky_B Protein SOPB; partition 49.4 15 0.00052 33.0 4.2 42 163-204 22-65 (189)
161 3cjn_A Transcriptional regulat 49.3 19 0.00064 30.4 4.8 41 165-206 50-91 (162)
162 2b5a_A C.BCLI; helix-turn-heli 49.3 9.1 0.00031 28.0 2.4 26 177-202 19-44 (77)
163 3nqo_A MARR-family transcripti 48.9 28 0.00094 30.6 6.0 41 165-205 39-81 (189)
164 1r71_A Transcriptional repress 48.7 15 0.0005 32.8 4.0 41 162-202 33-73 (178)
165 3jth_A Transcription activator 48.7 17 0.00058 28.2 4.0 28 180-207 35-62 (98)
166 3pqk_A Biofilm growth-associat 48.6 20 0.00068 28.1 4.5 29 180-208 35-63 (102)
167 2r1j_L Repressor protein C2; p 48.2 8 0.00027 27.4 1.8 26 177-202 14-39 (68)
168 3bdd_A Regulatory protein MARR 48.0 21 0.00073 29.1 4.8 41 165-206 29-70 (142)
169 2bgc_A PRFA; bacterial infecti 47.9 11 0.00038 34.2 3.2 66 164-231 137-219 (238)
170 3kz3_A Repressor protein CI; f 47.9 6.8 0.00023 29.3 1.4 24 179-202 23-46 (80)
171 3o9x_A Uncharacterized HTH-typ 47.8 10 0.00036 31.4 2.8 28 175-202 78-105 (133)
172 2k9q_A Uncharacterized protein 47.7 7.1 0.00024 28.9 1.5 27 176-202 10-36 (77)
173 2gau_A Transcriptional regulat 47.7 13 0.00043 33.4 3.5 44 164-207 150-206 (232)
174 3b7h_A Prophage LP1 protein 11 47.5 10 0.00034 27.8 2.4 26 177-202 16-41 (78)
175 4fx0_A Probable transcriptiona 47.5 33 0.0011 28.9 6.0 42 165-206 31-77 (148)
176 1y7y_A C.AHDI; helix-turn-heli 47.1 10 0.00035 27.3 2.4 26 177-202 22-47 (74)
177 1rzs_A Antirepressor, regulato 47.0 4.1 0.00014 29.4 0.0 23 180-202 9-31 (61)
178 2fu4_A Ferric uptake regulatio 46.9 23 0.00077 26.6 4.4 29 180-208 32-65 (83)
179 2fa5_A Transcriptional regulat 46.9 24 0.00082 29.7 5.1 41 165-206 47-88 (162)
180 1ub9_A Hypothetical protein PH 46.7 15 0.0005 28.3 3.4 28 180-207 29-56 (100)
181 1okr_A MECI, methicillin resis 46.5 17 0.00058 29.3 3.8 44 164-208 7-55 (123)
182 3s8q_A R-M controller protein; 46.5 11 0.00036 28.2 2.4 26 177-202 20-45 (82)
183 3bs3_A Putative DNA-binding pr 46.4 8.2 0.00028 28.1 1.7 26 177-202 19-44 (76)
184 1jgs_A Multiple antibiotic res 46.3 24 0.00082 28.7 4.8 42 164-206 31-73 (138)
185 1neq_A DNA-binding protein NER 46.1 12 0.00042 28.0 2.6 24 179-202 20-43 (74)
186 1fx7_A Iron-dependent represso 46.0 15 0.00051 33.7 3.8 41 167-207 7-50 (230)
187 3f6w_A XRE-family like protein 45.8 9.6 0.00033 28.5 2.0 26 177-202 23-48 (83)
188 2ewt_A BLDD, putative DNA-bind 45.3 11 0.00039 26.9 2.3 27 177-203 17-45 (71)
189 1zs4_A Regulatory protein CII; 45.1 13 0.00046 28.8 2.7 33 172-205 16-48 (83)
190 2p5k_A Arginine repressor; DNA 45.0 25 0.00084 24.7 4.1 35 169-203 5-46 (64)
191 2ppx_A AGR_C_3184P, uncharacte 44.9 11 0.00038 29.5 2.4 27 176-202 38-64 (99)
192 1adr_A P22 C2 repressor; trans 44.7 9.6 0.00033 27.7 1.8 26 177-202 14-39 (76)
193 1r1t_A Transcriptional repress 44.5 24 0.00081 29.0 4.4 28 180-207 58-85 (122)
194 2hzt_A Putative HTH-type trans 44.3 20 0.00068 28.5 3.9 29 179-207 25-54 (107)
195 3f3x_A Transcriptional regulat 44.2 16 0.00056 30.1 3.4 41 165-207 35-76 (144)
196 2fxa_A Protease production reg 44.1 28 0.00095 31.3 5.2 42 164-206 45-87 (207)
197 1lmb_3 Protein (lambda repress 44.0 8.6 0.00029 29.4 1.5 27 177-203 26-52 (92)
198 2kpj_A SOS-response transcript 43.9 12 0.00042 28.8 2.4 26 177-202 18-43 (94)
199 2ef8_A C.ECOT38IS, putative tr 43.4 13 0.00043 27.7 2.4 27 177-203 19-45 (84)
200 1xn7_A Hypothetical protein YH 43.3 27 0.00093 26.5 4.2 27 180-206 15-41 (78)
201 3qp6_A CVIR transcriptional re 43.3 44 0.0015 31.3 6.7 46 163-210 196-241 (265)
202 2ao9_A Phage protein; structur 43.2 21 0.00072 31.1 4.0 40 164-203 23-70 (155)
203 1o5l_A Transcriptional regulat 43.0 4.2 0.00014 36.4 -0.5 44 164-207 140-190 (213)
204 2cfx_A HTH-type transcriptiona 42.9 30 0.001 29.0 4.9 27 180-206 18-44 (144)
205 1qpz_A PURA, protein (purine n 42.9 9 0.00031 36.8 1.8 21 183-203 2-22 (340)
206 3f6o_A Probable transcriptiona 42.8 21 0.00073 28.9 3.9 30 179-208 29-58 (118)
207 3mn2_A Probable ARAC family tr 42.7 1.2E+02 0.004 23.6 8.3 76 128-206 16-95 (108)
208 2zkz_A Transcriptional repress 42.6 18 0.0006 28.4 3.2 29 180-208 40-68 (99)
209 3e6m_A MARR family transcripti 42.4 23 0.0008 29.9 4.3 41 165-206 51-92 (161)
210 3e97_A Transcriptional regulat 42.2 19 0.00066 32.1 3.9 63 166-230 146-223 (231)
211 2w25_A Probable transcriptiona 41.9 31 0.0011 29.0 4.9 27 180-206 20-46 (150)
212 3t76_A VANU, transcriptional r 41.7 14 0.00047 28.8 2.4 27 176-202 32-58 (88)
213 1u2w_A CADC repressor, cadmium 41.5 25 0.00086 28.7 4.1 28 180-207 55-82 (122)
214 2g9w_A Conserved hypothetical 41.5 20 0.00067 29.9 3.5 42 165-206 7-53 (138)
215 2ovg_A Phage lambda CRO; trans 41.5 8.5 0.00029 28.4 1.0 21 183-203 15-35 (66)
216 1x57_A Endothelial differentia 41.3 17 0.00059 27.7 2.9 30 174-203 19-48 (91)
217 1sfu_A 34L protein; protein/Z- 41.3 37 0.0013 25.8 4.6 39 166-204 12-52 (75)
218 2hsg_A Glucose-resistance amyl 41.0 8.8 0.0003 36.7 1.4 22 182-203 3-24 (332)
219 2cyy_A Putative HTH-type trans 41.0 37 0.0013 28.6 5.3 29 180-208 20-48 (151)
220 2ofy_A Putative XRE-family tra 40.9 21 0.00073 26.7 3.4 32 171-202 17-48 (86)
221 2xrn_A HTH-type transcriptiona 40.8 20 0.0007 33.1 3.9 41 167-207 4-47 (241)
222 2dbb_A Putative HTH-type trans 40.5 35 0.0012 28.7 5.0 28 180-207 22-49 (151)
223 1i1g_A Transcriptional regulat 40.4 27 0.00091 28.9 4.2 28 180-207 17-44 (141)
224 4ham_A LMO2241 protein; struct 40.4 32 0.0011 28.6 4.7 28 178-205 32-62 (134)
225 2pn6_A ST1022, 150AA long hypo 40.4 33 0.0011 28.8 4.9 27 181-207 17-43 (150)
226 3f6v_A Possible transcriptiona 40.1 18 0.00063 31.0 3.2 38 169-208 61-98 (151)
227 1mkm_A ICLR transcriptional re 39.8 22 0.00074 33.0 3.9 40 168-207 7-49 (249)
228 2cg4_A Regulatory protein ASNC 39.4 40 0.0014 28.4 5.3 29 180-208 21-49 (152)
229 2jsc_A Transcriptional regulat 39.3 18 0.00063 29.4 2.9 28 179-206 32-59 (118)
230 3kjx_A Transcriptional regulat 39.3 10 0.00034 36.5 1.5 22 182-203 11-32 (344)
231 2ict_A Antitoxin HIGA; helix-t 39.1 13 0.00044 28.6 1.8 27 177-203 17-43 (94)
232 3uj3_X DNA-invertase; helix-tu 38.7 6.5 0.00022 35.1 0.0 34 171-204 148-181 (193)
233 3g5g_A Regulatory protein; tra 38.6 16 0.00055 28.8 2.4 33 170-202 28-62 (99)
234 2p5v_A Transcriptional regulat 38.2 39 0.0013 28.8 5.1 27 180-206 23-49 (162)
235 3h5t_A Transcriptional regulat 37.9 11 0.00038 36.6 1.6 22 182-203 10-31 (366)
236 3trb_A Virulence-associated pr 37.9 14 0.00048 29.6 1.9 27 177-203 23-49 (104)
237 3cec_A Putative antidote prote 37.8 11 0.00039 29.6 1.3 28 176-203 26-53 (104)
238 2l49_A C protein; P2 bacteriop 37.6 17 0.00058 28.0 2.4 27 176-202 12-38 (99)
239 2hin_A GP39, repressor protein 37.5 15 0.0005 27.6 1.8 21 183-203 12-32 (71)
240 1yyv_A Putative transcriptiona 37.3 28 0.00094 29.0 3.8 34 175-208 41-76 (131)
241 1xwr_A Regulatory protein CII; 36.9 26 0.00091 27.9 3.4 30 175-205 18-47 (97)
242 2obp_A Putative DNA-binding pr 36.7 35 0.0012 27.1 4.1 40 168-207 18-62 (96)
243 2o0y_A Transcriptional regulat 36.5 28 0.00095 32.5 4.1 44 164-207 18-64 (260)
244 1sd4_A Penicillinase repressor 36.5 26 0.00089 28.3 3.4 42 164-206 7-53 (126)
245 2b0l_A GTP-sensing transcripti 36.5 19 0.00064 28.8 2.5 31 176-206 35-68 (102)
246 2k02_A Ferrous iron transport 36.5 28 0.00097 27.1 3.4 26 180-205 15-40 (87)
247 1vz0_A PARB, chromosome partit 36.4 32 0.0011 31.8 4.4 41 163-203 116-156 (230)
248 3kxa_A NGO0477 protein, putati 36.3 20 0.0007 30.3 2.8 28 176-203 76-103 (141)
249 2vn2_A DNAD, chromosome replic 36.2 40 0.0014 27.9 4.6 43 164-206 29-76 (128)
250 2f2e_A PA1607; transcription f 36.2 27 0.00092 29.6 3.6 29 180-208 36-64 (146)
251 1gdt_A GD resolvase, protein ( 35.8 18 0.00063 31.7 2.5 28 176-203 153-180 (183)
252 2g7u_A Transcriptional regulat 35.8 35 0.0012 31.7 4.6 44 164-207 9-55 (257)
253 3vk0_A NHTF, transcriptional r 35.8 18 0.00063 29.0 2.4 37 166-202 17-55 (114)
254 2h09_A Transcriptional regulat 35.6 33 0.0011 28.8 4.1 27 180-206 53-79 (155)
255 3tqn_A Transcriptional regulat 35.6 22 0.00076 28.7 2.8 25 183-207 35-59 (113)
256 3n0r_A Response regulator; sig 35.4 21 0.00071 33.9 3.0 51 165-216 112-162 (286)
257 2eby_A Putative HTH-type trans 35.3 16 0.00053 29.2 1.8 28 176-203 19-46 (113)
258 3op9_A PLI0006 protein; struct 35.2 19 0.00066 28.7 2.4 28 176-203 17-44 (114)
259 1rr7_A Middle operon regulator 35.0 41 0.0014 28.1 4.5 29 180-208 91-119 (129)
260 2ia0_A Putative HTH-type trans 34.6 48 0.0016 28.8 5.1 42 164-206 14-56 (171)
261 2auw_A Hypothetical protein NE 34.4 16 0.00056 32.3 1.9 29 174-202 96-124 (170)
262 2o38_A Hypothetical protein; a 34.4 20 0.00068 29.5 2.4 27 176-202 48-74 (120)
263 2fsw_A PG_0823 protein; alpha- 34.2 32 0.0011 27.2 3.5 29 179-207 36-65 (107)
264 1b0n_A Protein (SINR protein); 34.1 21 0.0007 28.1 2.4 27 176-202 9-35 (111)
265 3hot_A Transposable element ma 34.0 1E+02 0.0035 29.3 7.9 69 134-204 30-109 (345)
266 3lsg_A Two-component response 33.8 51 0.0017 25.6 4.7 75 129-206 18-94 (103)
267 1k78_A Paired box protein PAX5 33.8 1.4E+02 0.0046 24.7 7.8 74 130-204 48-141 (149)
268 2e1c_A Putative HTH-type trans 33.5 51 0.0018 28.6 5.1 27 180-206 40-66 (171)
269 3mlf_A Transcriptional regulat 33.5 24 0.00083 28.3 2.7 28 176-203 31-58 (111)
270 2wus_R RODZ, putative uncharac 33.4 20 0.00067 29.2 2.1 28 176-203 15-42 (112)
271 1j5y_A Transcriptional regulat 33.4 42 0.0014 29.6 4.6 39 169-207 21-62 (187)
272 3oou_A LIN2118 protein; protei 33.3 48 0.0016 26.0 4.5 32 175-206 15-46 (108)
273 3ivp_A Putative transposon-rel 33.2 20 0.00069 29.2 2.2 27 176-202 20-46 (126)
274 3r4k_A Transcriptional regulat 33.2 33 0.0011 32.1 4.0 43 166-208 3-48 (260)
275 3mkl_A HTH-type transcriptiona 33.0 87 0.003 25.0 6.1 74 129-206 22-97 (120)
276 3oio_A Transcriptional regulat 32.8 1.8E+02 0.006 22.8 8.5 76 128-206 21-98 (113)
277 2k9s_A Arabinose operon regula 32.8 66 0.0022 25.1 5.2 75 129-206 19-95 (107)
278 2qq9_A Diphtheria toxin repres 32.7 26 0.00088 32.0 3.1 41 168-208 8-51 (226)
279 2di3_A Bacterial regulatory pr 32.7 32 0.0011 31.4 3.8 21 185-205 32-52 (239)
280 2o20_A Catabolite control prot 32.6 9.4 0.00032 36.6 0.0 23 182-204 6-28 (332)
281 3ctp_A Periplasmic binding pro 32.5 9.4 0.00032 36.5 0.0 22 183-204 4-25 (330)
282 2r0q_C Putative transposon TN5 32.3 25 0.00086 31.6 2.9 29 175-203 169-197 (209)
283 2ia2_A Putative transcriptiona 32.2 35 0.0012 31.9 4.0 45 164-208 16-63 (265)
284 3bil_A Probable LACI-family tr 31.8 9.8 0.00034 36.8 0.0 22 183-204 10-31 (348)
285 3f52_A CLP gene regulator (CLG 31.7 21 0.00074 28.5 2.1 37 166-202 24-62 (117)
286 3h5o_A Transcriptional regulat 31.4 10 0.00034 36.5 0.0 23 182-204 5-27 (339)
287 1pdn_C Protein (PRD paired); p 31.2 86 0.0029 24.7 5.8 74 130-204 33-126 (128)
288 1a04_A Nitrate/nitrite respons 31.1 34 0.0012 30.0 3.6 45 164-210 154-198 (215)
289 3jvd_A Transcriptional regulat 31.0 10 0.00035 36.4 0.0 23 182-204 7-29 (333)
290 3neu_A LIN1836 protein; struct 31.0 25 0.00086 28.9 2.5 24 183-206 39-62 (125)
291 2jvl_A TRMBF1; coactivator, he 30.8 28 0.00094 27.7 2.6 24 179-202 47-70 (107)
292 1jye_A Lactose operon represso 30.7 10 0.00036 36.6 0.0 23 182-204 4-26 (349)
293 3dbi_A Sugar-binding transcrip 30.7 11 0.00036 36.2 0.0 22 183-204 5-26 (338)
294 3cta_A Riboflavin kinase; stru 30.6 41 0.0014 30.6 4.1 27 181-207 27-53 (230)
295 3oou_A LIN2118 protein; protei 30.6 60 0.0021 25.4 4.7 75 129-206 20-96 (108)
296 3mn2_A Probable ARAC family tr 30.6 46 0.0016 26.1 4.0 29 177-205 14-42 (108)
297 2k4b_A Transcriptional regulat 30.5 27 0.00091 27.8 2.4 39 167-206 36-78 (99)
298 3hrs_A Metalloregulator SCAR; 30.5 41 0.0014 30.4 4.0 39 169-207 5-46 (214)
299 3e3m_A Transcriptional regulat 29.9 11 0.00038 36.5 0.0 22 183-204 14-35 (355)
300 1ixc_A CBNR, LYSR-type regulat 29.9 40 0.0014 30.8 4.0 36 179-214 13-48 (294)
301 2wte_A CSA3; antiviral protein 29.5 56 0.0019 30.4 4.8 28 180-207 165-192 (244)
302 1z7u_A Hypothetical protein EF 29.4 53 0.0018 26.1 4.2 36 171-208 27-63 (112)
303 2ek5_A Predicted transcription 29.4 31 0.0011 28.7 2.7 22 183-204 30-51 (129)
304 1v4r_A Transcriptional repress 28.6 22 0.00074 28.0 1.6 20 183-202 37-56 (102)
305 1z4h_A TORI, TOR inhibition pr 28.3 27 0.00094 25.2 2.0 22 183-204 12-33 (66)
306 1uly_A Hypothetical protein PH 28.0 44 0.0015 29.8 3.7 35 169-205 23-57 (192)
307 3by6_A Predicted transcription 27.9 31 0.001 28.5 2.5 24 183-206 37-60 (126)
308 3k2z_A LEXA repressor; winged 27.9 57 0.002 28.8 4.5 25 181-205 24-48 (196)
309 3c3w_A Two component transcrip 27.9 37 0.0013 30.3 3.2 44 164-209 149-192 (225)
310 3fzv_A Probable transcriptiona 27.6 47 0.0016 30.5 4.0 40 175-214 12-51 (306)
311 3i4p_A Transcriptional regulat 27.1 72 0.0025 27.2 4.9 26 181-206 17-42 (162)
312 2k9s_A Arabinose operon regula 27.0 70 0.0024 25.0 4.4 26 180-205 19-44 (107)
313 3df8_A Possible HXLR family tr 26.6 66 0.0023 25.6 4.3 35 174-208 32-70 (111)
314 1yio_A Response regulatory pro 26.3 44 0.0015 29.0 3.4 44 164-209 142-185 (208)
315 3oio_A Transcriptional regulat 25.7 60 0.002 25.7 3.8 27 179-205 21-47 (113)
316 3plo_X DNA-invertase; resolvas 25.7 15 0.0005 32.8 0.0 34 174-207 151-184 (193)
317 2p5t_A Putative transcriptiona 25.3 15 0.00051 31.5 0.0 25 177-201 10-34 (158)
318 1ic8_A Hepatocyte nuclear fact 25.1 32 0.0011 31.0 2.2 26 177-202 39-64 (194)
319 3fym_A Putative uncharacterize 25.0 30 0.001 28.7 1.9 27 176-202 11-37 (130)
320 2h8r_A Hepatocyte nuclear fact 24.9 29 0.00098 32.0 1.8 32 172-203 35-66 (221)
321 3klo_A Transcriptional regulat 24.2 47 0.0016 29.5 3.2 40 164-205 159-198 (225)
322 3lfp_A CSP231I C protein; tran 24.1 41 0.0014 25.9 2.4 27 176-202 9-39 (98)
323 2ijl_A AGR_C_4647P, molybdenum 24.0 59 0.002 27.4 3.6 41 171-212 29-69 (135)
324 3mq0_A Transcriptional repress 24.0 58 0.002 30.7 3.9 45 164-208 25-72 (275)
325 1p4x_A Staphylococcal accessor 23.8 56 0.0019 30.4 3.7 45 164-208 155-201 (250)
326 2y75_A HTH-type transcriptiona 23.6 69 0.0024 26.0 3.9 27 181-207 26-52 (129)
327 3dn7_A Cyclic nucleotide bindi 23.5 18 0.00061 31.3 0.2 41 165-205 149-192 (194)
328 3lsg_A Two-component response 23.5 95 0.0032 23.9 4.6 25 181-205 19-43 (103)
329 1u8b_A ADA polyprotein; protei 22.8 70 0.0024 26.1 3.8 39 168-206 78-118 (133)
330 1j9i_A GPNU1 DBD;, terminase s 22.4 29 0.00098 25.2 1.1 22 183-204 4-25 (68)
331 3ic7_A Putative transcriptiona 22.1 35 0.0012 28.1 1.7 24 183-206 37-60 (126)
332 1bl0_A Protein (multiple antib 21.8 79 0.0027 25.7 3.9 27 179-205 25-51 (129)
333 2o3f_A Putative HTH-type trans 21.6 52 0.0018 26.5 2.7 23 181-203 39-61 (111)
334 1y9q_A Transcriptional regulat 21.5 44 0.0015 29.2 2.4 27 177-203 20-46 (192)
335 2fe3_A Peroxide operon regulat 21.5 1.2E+02 0.0039 25.5 5.0 45 163-207 18-68 (145)
336 3hhg_A Transcriptional regulat 21.3 59 0.002 29.8 3.4 40 174-213 10-49 (306)
337 3bdn_A Lambda repressor; repre 21.2 61 0.0021 29.2 3.4 33 171-203 18-52 (236)
338 1p4x_A Staphylococcal accessor 20.9 1.4E+02 0.0048 27.6 5.8 43 164-206 31-75 (250)
339 1bl0_A Protein (multiple antib 20.7 1.3E+02 0.0043 24.4 5.0 76 129-207 26-103 (129)
340 2gqq_A Leucine-responsive regu 20.7 53 0.0018 28.0 2.7 28 179-206 25-52 (163)
341 2v79_A DNA replication protein 20.5 1.1E+02 0.0038 25.6 4.6 26 181-206 51-76 (135)
342 2esn_A Probable transcriptiona 20.4 61 0.0021 29.8 3.3 35 179-213 22-56 (310)
No 1
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.54 E-value=0.069 Score=43.62 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 141 GLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 141 Rms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
|||.++|+.+...+ .++. ..+-++=.||-.|.++.+||..+|+|+++|++.+.+.-....
T Consensus 4 rmT~~eFe~~~~~l---------~~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGL---------EVGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTC---------CCCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccC---------ChHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 69999999988665 1322 335567778889999999999999999999999988776643
No 2
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.38 E-value=0.052 Score=36.89 Aligned_cols=40 Identities=10% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
..++.+++..+... +..|.++.++|..+|||.+||.++++
T Consensus 4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 35777776555444 46899999999999999999998874
No 3
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.31 E-value=0.11 Score=38.62 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHhh-h--ccCccHHHHhhhccCCcchhHHHHHHHHHHHHh
Q 012200 164 SLPSDYAVAMVLSR-L--AHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211 (468)
Q Consensus 164 ~l~~e~~L~i~L~~-L--a~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~ 211 (468)
.+|+.++-.+.|+| + ..|.++.++|..+|+|.+||..+..+...-|..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888888887 3 589999999999999999999998887766653
No 4
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=93.14 E-value=0.24 Score=36.49 Aligned_cols=48 Identities=21% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhh
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATK 212 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~ 212 (468)
.+|+.++-.+.|+| ..|.++.++|..+|+|.+||.+.+++....+...
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888877666655 5789999999999999999999998888877654
No 5
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.11 E-value=0.091 Score=38.10 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhhccCcc----HHHHhhhccCCcchhHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLS----AKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s----~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+++.++.+ +.++..|.+ ...+|..|||+.+|+.+++...
T Consensus 4 ~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 4 RIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 46888988888 777888889 9999999999999999987543
No 6
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.33 E-value=0.16 Score=39.90 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHhhh-c--cCccHHHHhhhccCCcchhHHHHHHHHHHHHhh
Q 012200 164 SLPSDYAVAMVLSRL-A--HGLSAKALASRYSLEPYLISKITNMVTRLLATK 212 (468)
Q Consensus 164 ~l~~e~~L~i~L~~L-a--~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~ 212 (468)
.+|+.++-.+.|+|+ . .|.++.+||..+|+|.+||..+..+....|...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 588888888888874 4 789999999999999999999988887777643
No 7
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.31 E-value=0.23 Score=37.34 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHhhh-c--cCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRL-A--HGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~L-a--~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.+|+.++-.+.|+|+ . .|.++.++|..+|+|.+||..+.......|.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578888888888774 3 7899999999999999999999988887776
No 8
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.85 E-value=0.19 Score=40.08 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHhhhcc-CccHHHHhhhccCCcchhHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAH-GLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~-g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+.+.+..++-.++.. |.+...+|..||||.+|+++++...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888888888777777 9999999999999999999987654
No 9
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=91.49 E-value=0.29 Score=38.63 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
.++..++-++.|+| -.|.++.+||..+|+|.+||...+.+....|.+.|
T Consensus 37 ~L~~~~r~vl~l~~-~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSY-YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47787877776665 47899999999999999999999888877776543
No 10
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.07 E-value=0.43 Score=38.66 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHhhh---ccCccHHHHhhhccCCcchhHHHHHHHHHHHHhh
Q 012200 164 SLPSDYAVAMVLSRL---AHGLSAKALASRYSLEPYLISKITNMVTRLLATK 212 (468)
Q Consensus 164 ~l~~e~~L~i~L~~L---a~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~ 212 (468)
.+|+.++-.+.|+|+ ..|.++.++|..+|+|..||..+..+....|-..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 489999999999886 3789999999999999999999988888777643
No 11
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=89.98 E-value=0.25 Score=40.26 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhh-----hccC-ccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 165 LPSDYAVAMVLSR-----LAHG-LSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 165 l~~e~~L~i~L~~-----La~g-~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
+++.++-.|.+++ |..| .+|++||...|+|.+||+|+ ++...-
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~ 84 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKA 84 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHH
Confidence 5666664444433 3366 99999999999999999999 554443
No 12
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=89.65 E-value=0.16 Score=33.00 Aligned_cols=20 Identities=15% Similarity=0.678 Sum_probs=18.5
Q ss_pred CChhhHHHhcCCCHHHHHHH
Q 012200 131 LREAHWRSLYGLSYPVFTTV 150 (468)
Q Consensus 131 l~d~~fr~~fRms~~~F~~L 150 (468)
++|++|...|||+++.|..|
T Consensus 1 Lsd~dF~~vFgmsr~eF~~L 20 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANL 20 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHS
T ss_pred CCHHHHHHHHCCCHHHHHHC
Confidence 57999999999999999886
No 13
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.43 E-value=0.39 Score=37.63 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
...+.+.+..+.-.+ ..|.+...+|..|||+.+|+++++...-.
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 467887776555444 67899999999999999999999876544
No 14
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.94 E-value=0.26 Score=33.66 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.4
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+..+..|.+..++|..+|||.+||++++.
T Consensus 15 ~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 15 SRLLEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 33456889999999999999999998863
No 15
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=88.65 E-value=0.7 Score=34.26 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..++..++-.+.+ +..|.++.++|..+|+|.+||+..+.....-+.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4578877766555 388999999999999999999999888776654
No 16
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=88.54 E-value=0.22 Score=32.86 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.2
Q ss_pred CCChhhHHHhcCCCHHHHHHH
Q 012200 130 PLREAHWRSLYGLSYPVFTTV 150 (468)
Q Consensus 130 ~l~d~~fr~~fRms~~~F~~L 150 (468)
.++|++|...|||+++.|..|
T Consensus 2 yLsd~dF~~vFgmsr~eF~~L 22 (37)
T 1und_A 2 YLSEQDFVSVFGITRGQFAAL 22 (37)
T ss_dssp CCCHHHHHHHHSSCHHHHHHS
T ss_pred CCCHHHHHHHHCcCHHHHHHC
Confidence 478999999999999999886
No 17
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.86 E-value=0.56 Score=39.23 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHhhhccCccHH-HHhhhccCCcchhHHHHHHHHHHH
Q 012200 162 NLSLPSDYAVAMVLSRLAHGLSAK-ALASRYSLEPYLISKITNMVTRLL 209 (468)
Q Consensus 162 ~~~l~~e~~L~i~L~~La~g~s~~-~la~~Fgvs~sTvsri~~~v~~~l 209 (468)
+..++.+.+.-+.-.+..+|.+.. ++|..|||+++|++++++.-....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 457899999888777667777665 999999999999999987755443
No 18
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=87.78 E-value=0.73 Score=36.64 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..++-.+.|+ ..|.++.+||...|+|..||...+.+...-|.
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5788887777774 89999999999999999999999888777665
No 19
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=86.99 E-value=1.3 Score=35.63 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=45.1
Q ss_pred HHHHHHHHhccccccCCCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 146 VFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 146 ~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
....+++.|.+.-.. ...++..++-.+.| +..|.++.+||...|+|..||...+..+..-+-
T Consensus 17 ~~~~~l~~l~~~~~~-~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 17 SVAKLLEKISAGGYG-DKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHHCCCCS-SSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHccCCcc-cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344556666554222 45688877765555 468999999999999999999998887766654
No 20
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=86.99 E-value=0.44 Score=33.49 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=23.6
Q ss_pred hccCccHHHHhhhccCCcchhHHHHH
Q 012200 178 LAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 178 La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+..|.++.++|..+|+|++||++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57899999999999999999998864
No 21
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=86.56 E-value=0.82 Score=35.27 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..++-.+.| +..|.++.++|..+|+|..||...+.+...-+.
T Consensus 21 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 578877766666 379999999999999999999998887766554
No 22
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=85.99 E-value=0.83 Score=36.71 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+.+.++.+++.++..+.+..+++.+|+|+.+++.++...+
T Consensus 31 rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 31 RRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4588999999999999999999999999999998888776544
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=85.91 E-value=1.1 Score=37.10 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhh
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATK 212 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~ 212 (468)
.+|+.++-++.|+ +..|.++.++|..+|+|.+||.+.+++....+...
T Consensus 22 ~L~~~~r~vl~l~-y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELY-YADDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHH-HHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3677777655554 45789999999999999999999998888777654
No 24
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=85.34 E-value=0.98 Score=41.25 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
..+|+.++-++.|+|+ .|.++.+||..+|+|.+||...+++....|.+.|
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999888888775 6899999999999999999999988888776544
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=85.28 E-value=1 Score=36.84 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..++.+.+..+...+ ..|.+...+|..||||.+||++++....
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357887777765554 5899999999999999999999987654
No 26
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=84.94 E-value=0.7 Score=33.02 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=29.1
Q ss_pred hccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 178 LAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 178 La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
+..|.++.++|...|+|.+||...+.....-+.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 688999999999999999999998887766654
No 27
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=84.40 E-value=1.1 Score=38.29 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..++.+.+..+...+ ..|.+...+|..||||.+||+++++....
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357888887776655 57999999999999999999999877643
No 28
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.38 E-value=2 Score=35.97 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 130 PLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 130 ~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++++-+...+++.+..-..+-..+.+ ....+++. ..++..|+. ..+.+..+++..+|++++|++++++....
T Consensus 4 ~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~~~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 4 PVNPDLMPALMAVFQHVRTRIQSELDC----QRLDLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344455555555444333333333332 22356654 444444443 34789999999999999999998876543
No 29
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=84.28 E-value=1 Score=33.93 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 165 LPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 165 l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
+++.++-.+.| + ..|.++.++|..+|+|..||...+.+...-+-
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 45656655555 3 78999999999999999999988877766554
No 30
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=84.10 E-value=0.46 Score=35.74 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.5
Q ss_pred ccCCCCChhhHHHhcCCCHHHHHHHH
Q 012200 126 SLEAPLREAHWRSLYGLSYPVFTTVV 151 (468)
Q Consensus 126 ~~~~~l~d~~fr~~fRms~~~F~~L~ 151 (468)
+++..|+|++|...|||+++.|..|=
T Consensus 29 ~lE~yLsdedF~~vFgmsr~eF~~LP 54 (68)
T 1qzp_A 29 RLERHLSAEDFSRVFAMSPEEFGKLA 54 (68)
T ss_dssp GCGGGBCHHHHHHHSSSCHHHHHHSC
T ss_pred HHHhhCCHHHHHHHHCcCHHHHHHCh
Confidence 45667899999999999999999873
No 31
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=83.84 E-value=1.2 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhc-cCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRY-SLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~F-gvs~sTvsri~~~v~~~l~ 210 (468)
..+..-.|++|.|.+--+|.++.++|..| |...+||...++.+-..+.
T Consensus 28 ~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 28 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999 8999999999998888775
No 32
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=83.81 E-value=0.74 Score=37.25 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhhccC-------ccHHHHhhhccCCcchhHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHG-------LSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g-------~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+.+.++.++-.++..| .+...+|..|||+.+|+++++...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4578888888887777665 799999999999999999887654
No 33
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=83.74 E-value=1.5 Score=38.73 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
.+|+.++-++.|+++ .|.++.+||...|+|.+||...+.+....|.+.|
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 478888887777665 6899999999999999999999998888887654
No 34
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=83.69 E-value=1.1 Score=37.52 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
..++.+++..+... +..|.+...+|..+|||.+||++++..
T Consensus 5 ~~~s~~~r~~i~~~-~~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 45777777665554 478999999999999999999998754
No 35
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=82.25 E-value=1.2 Score=38.37 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHhh--hccCccHHHHhh----hc--cCCcchhHHHHHHHHHH
Q 012200 161 SNLSLPSDYAVAMVLSR--LAHGLSAKALAS----RY--SLEPYLISKITNMVTRL 208 (468)
Q Consensus 161 ~~~~l~~e~~L~i~L~~--La~g~s~~~la~----~F--gvs~sTvsri~~~v~~~ 208 (468)
.+..++.++++.|..++ -..+.++.++|. .| ||+++||++|++.=-..
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~ 63 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSY 63 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHH
Confidence 34679999999998888 335568899999 99 99999999998764443
No 36
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.93 E-value=1.9 Score=33.95 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..++..++-.+.| ++.|.++.+||...|+|..||..++..+..-+-
T Consensus 28 ~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4577777655444 449999999999999999999988877765543
No 37
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=81.78 E-value=0.52 Score=35.32 Aligned_cols=26 Identities=15% Similarity=0.515 Sum_probs=22.5
Q ss_pred ccCCCCChhhHHHhcCCCHHHHHHHH
Q 012200 126 SLEAPLREAHWRSLYGLSYPVFTTVV 151 (468)
Q Consensus 126 ~~~~~l~d~~fr~~fRms~~~F~~L~ 151 (468)
+++..++|++|...|||+++.|..|=
T Consensus 28 ~lE~yLsdedF~~vFgms~~eF~~LP 53 (67)
T 1yu8_X 28 AKENHLSDEDFKAVFGMTRSAFANLP 53 (67)
T ss_dssp CGGGGSCHHHHHHHHSSCHHHHHTSC
T ss_pred HHHhcCCHHHHHHHHCcCHHHHHHCh
Confidence 55667899999999999999998763
No 38
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=81.61 E-value=5 Score=33.31 Aligned_cols=75 Identities=7% Similarity=-0.008 Sum_probs=52.3
Q ss_pred CCChhhHHHhcCCCHHHHHHHHHHhccccc----cCCCCCCHHHHHHHHHhhhccCccHHHHhhhcc--CCcchhHHHHH
Q 012200 130 PLREAHWRSLYGLSYPVFTTVVEKLKPYIA----ASNLSLPSDYAVAMVLSRLAHGLSAKALASRYS--LEPYLISKITN 203 (468)
Q Consensus 130 ~l~d~~fr~~fRms~~~F~~L~~~L~p~l~----~~~~~l~~e~~L~i~L~~La~g~s~~~la~~Fg--vs~sTvsri~~ 203 (468)
-.+-.+.-..+++++.++...+........ .....++.+....+.-..-..+.+...++..+| +|.+||+++++
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 356778888899999999999887654321 122356665543333223334578999999999 79999999986
Q ss_pred H
Q 012200 204 M 204 (468)
Q Consensus 204 ~ 204 (468)
.
T Consensus 102 ~ 102 (141)
T 1u78_A 102 R 102 (141)
T ss_dssp H
T ss_pred H
Confidence 5
No 39
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=81.44 E-value=1 Score=35.37 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..++-.+.| +..|.++.++|..+|+|.+||...+.+...-+.
T Consensus 29 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 467766666666 378999999999999999999988877766554
No 40
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=80.81 E-value=1.9 Score=36.59 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
.+|+.++-.+. ++-.|.++.++|..+|+|.+||...+.+....|.+.|
T Consensus 109 ~L~~~~r~v~~--~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT--YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH--HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 36777776665 3558999999999999999999999888887776543
No 41
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=80.26 E-value=0.54 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=22.0
Q ss_pred ccCCCCChhhHHHhcCCCHHHHHHH
Q 012200 126 SLEAPLREAHWRSLYGLSYPVFTTV 150 (468)
Q Consensus 126 ~~~~~l~d~~fr~~fRms~~~F~~L 150 (468)
+.+..++|++|...|||+++.|..|
T Consensus 28 ~lE~yLsdedF~~vFgmsr~eF~~L 52 (67)
T 2k6m_S 28 KLEIYLTDEDFEFALDMTRDEYNAL 52 (67)
T ss_dssp BCGGGSCHHHHHHHTSSCHHHHTTS
T ss_pred HHHhhCCHHHHHHHHCcCHHHHHHC
Confidence 5566789999999999999999876
No 42
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=78.64 E-value=2.2 Score=35.12 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 165 LPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 165 l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
+|+.++-++.| ++..|.++.++|..+|+|.+||...+++....+...+
T Consensus 26 L~~~~r~vl~l-~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLEL-FYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHH-HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 67777666555 4467899999999999999999999888887776543
No 43
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=78.35 E-value=1.3 Score=36.27 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=25.8
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
...|..|.+|++|+...|+|.+||+|+-+.
T Consensus 52 a~lL~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 52 AKMLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 445889999999999999999999987543
No 44
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=78.11 E-value=1.9 Score=37.79 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHh
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~ 211 (468)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+.+....|.+
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888777665 68999999999999999999998888777654
No 45
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=77.34 E-value=2.7 Score=34.03 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHh
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLAT 211 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~ 211 (468)
.+..-.|++|.|.+=-++.++.++|..||...+||...++.+...+.+
T Consensus 33 ~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 33 ALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 456678899999999999999999999999999999998888887763
No 46
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=77.12 E-value=0.64 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=22.4
Q ss_pred ccCCCCChhhHHHhcCCCHHHHHHHH
Q 012200 126 SLEAPLREAHWRSLYGLSYPVFTTVV 151 (468)
Q Consensus 126 ~~~~~l~d~~fr~~fRms~~~F~~L~ 151 (468)
+++..|+|++|...|+|+++.|..|=
T Consensus 43 klE~YLSdedF~~vFgMsr~eF~~LP 68 (88)
T 1ujs_A 43 RLERHLSQEEFYQVFGMTISEFDRLA 68 (88)
T ss_dssp TGGGGSCTTHHHHHHSSCHHHHTTSC
T ss_pred HHHhcCCHHHHHHHHCcCHHHHHHCh
Confidence 45667899999999999999998774
No 47
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=77.07 E-value=1.3 Score=37.06 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 172 AMVLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 172 ~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.-++..|+.|.+|++|++..|+|..||+|+-+
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44567789999999999999999999998643
No 48
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=76.91 E-value=1.9 Score=37.25 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
..++.+.+..+...+ ..|.+...+|..||||.+||+++++
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357788777665554 6899999999999999999999874
No 49
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=75.22 E-value=2 Score=33.32 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 171 VAMVLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
|-.-|..+..|.++.++|+..||+++|++.|+
T Consensus 22 ~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 22 VRNALKDLLKDMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp HHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHH
Confidence 44444555559999999999999999999885
No 50
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=73.99 E-value=6.9 Score=35.45 Aligned_cols=74 Identities=12% Similarity=-0.075 Sum_probs=49.3
Q ss_pred hhhHHHhcCCCHHHHHHHHHHhcccccc------CCCCCCHHHHHHHHHhhhcc--------CccHHHHhhhccCCcchh
Q 012200 133 EAHWRSLYGLSYPVFTTVVEKLKPYIAA------SNLSLPSDYAVAMVLSRLAH--------GLSAKALASRYSLEPYLI 198 (468)
Q Consensus 133 d~~fr~~fRms~~~F~~L~~~L~p~l~~------~~~~l~~e~~L~i~L~~La~--------g~s~~~la~~Fgvs~sTv 198 (468)
.+.|...+.-.+.....++..+...+.. .-...+++++++-+|..++. ..+..++|...|+++.|+
T Consensus 124 ~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tv 203 (232)
T 1zyb_A 124 KAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNI 203 (232)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHH
Confidence 4455555544444444444444332211 12356899999999988753 247899999999999999
Q ss_pred HHHHHHHH
Q 012200 199 SKITNMVT 206 (468)
Q Consensus 199 sri~~~v~ 206 (468)
+|++++..
T Consensus 204 sR~l~~l~ 211 (232)
T 1zyb_A 204 SKTLNELQ 211 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987764
No 51
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=73.37 E-value=3.1 Score=35.84 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhcC
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKLY 214 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L~ 214 (468)
..+|+.++-++.|.+ -.|.++.+||...|+|.+||...+.+....|.+.+.
T Consensus 92 ~~Lp~~~r~vl~L~~-~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 92 ARMTPLSRQALLLTA-MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TTSCTTHHHHHTTTS-SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 357888887666554 458999999999999999999999888888876543
No 52
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=72.76 E-value=3 Score=32.84 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=24.1
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..+.+..+++..+|++++|++++++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567899999999999999999886654
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.71 E-value=5.4 Score=34.53 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+....+.+..+++..++++++|++++++...
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 4655 444555555545678999999999999999999876654
No 54
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=71.69 E-value=4.4 Score=29.85 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 168 DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 168 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+++++-.|.--....+..++|..+|++++||++++....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445555554322457899999999999999998876543
No 55
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.66 E-value=3.9 Score=37.49 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=50.1
Q ss_pred ChhhHHHhcCCCHHHHHHHHHHhccccccC------CCCCCHHHHHHHHHhhhcc--------------CccHHHHhhhc
Q 012200 132 REAHWRSLYGLSYPVFTTVVEKLKPYIAAS------NLSLPSDYAVAMVLSRLAH--------------GLSAKALASRY 191 (468)
Q Consensus 132 ~d~~fr~~fRms~~~F~~L~~~L~p~l~~~------~~~l~~e~~L~i~L~~La~--------------g~s~~~la~~F 191 (468)
+.+.|...+.-.+.....++..+...+... -...+++++|+-+|..++. ..+..++|...
T Consensus 124 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~l 203 (243)
T 3la7_A 124 PIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAI 203 (243)
T ss_dssp EHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHH
Confidence 345555555545554444444443322110 1246889999999988752 35789999999
Q ss_pred cCCcchhHHHHHHHHH
Q 012200 192 SLEPYLISKITNMVTR 207 (468)
Q Consensus 192 gvs~sTvsri~~~v~~ 207 (468)
|+++.|++|++++..+
T Consensus 204 G~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 204 GSTRVTVTRLLGDLRE 219 (243)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999877654
No 56
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.56 E-value=2.1 Score=31.65 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.7
Q ss_pred cHHHHhhhccCCcchhHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~ 203 (468)
+..++|...|||++||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 568999999999999999874
No 57
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=69.30 E-value=5.1 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhcc--CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 168 DYAVAMVLSRLAH--GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 168 e~~L~i~L~~La~--g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.+++-+|.-.+. +.+..++|..+||+++||.+.+....
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566666666663 57899999999999999988876654
No 58
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.19 E-value=6.4 Score=32.60 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+++ +..++..|+.-..+.+..+++..+|++++|++++++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 443 444555553445678999999999999999999876654
No 59
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=69.16 E-value=4 Score=31.98 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHhhhccC---ccHHHHhhhccCCcchhHHHHHHHH
Q 012200 171 VAMVLSRLAHG---LSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 171 L~i~L~~La~g---~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++..|+.-..+ .+..+++..+|++++|++++++...
T Consensus 17 iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 55 (95)
T 2qvo_A 17 ILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE 55 (95)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33344433345 7899999999999999999986654
No 60
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=68.89 E-value=2.6 Score=37.65 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhhhcc-------CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH-------GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..+++++++-+|..+.. ..+..++|...|+++.|++|++++..+.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46889999999988875 5688999999999999999998876543
No 61
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=68.50 E-value=4 Score=31.73 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=31.0
Q ss_pred CHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 166 PSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 166 ~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
+...+++..|. ..|.+..+||..+|+|+++|++.+....+
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44566666666 46799999999999999999888766543
No 62
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=67.90 E-value=8.2 Score=35.67 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHH
Q 012200 162 NLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLL 209 (468)
Q Consensus 162 ~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l 209 (468)
...+++.++-.+.| ++.|.+..+||...|||..||..++..+..-+
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35788877654444 68999999999999999999998887765544
No 63
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=67.44 E-value=5.1 Score=36.32 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHH
Q 012200 166 PSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 166 ~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+..+.-.-..+++..|.++.++|..+|||+++|+|.+..
T Consensus 9 sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 9 SIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 433333333444789999999999999999999998754
No 64
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.34 E-value=11 Score=30.81 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++.. ..++..|+. ..+.+..+++..+|++++|++++++....
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 35553 344444433 34679999999999999999998866543
No 65
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.23 E-value=8.1 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+.-..+.+..+++..++++++|++++++...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 3554 444444444444456999999999999999999876553
No 66
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.09 E-value=11 Score=32.20 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCCH-HHHHHHHHhhh-ccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRL-AHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~L-a~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+.. ..+.+..+|+..++++++|++++++...
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 4655 44455555555 3588999999999999999999876654
No 67
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=66.18 E-value=3.6 Score=29.69 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.5
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+...| ++..+|...|++++++++++
T Consensus 9 ~~~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 9 YLEEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 345567 99999999999999999987
No 68
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=65.85 E-value=3.6 Score=32.80 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=22.8
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
..+.+..++|..+|||.+||++.++.
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 44578999999999999999999865
No 69
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=65.32 E-value=3.1 Score=36.88 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhhcc-------------CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH-------------GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..+
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 36789999999988864 246789999999999999999876643
No 70
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=65.32 E-value=3.8 Score=36.18 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhhhcc-------------CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH-------------GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36788999988887754 24778999999999999999987765
No 71
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=65.23 E-value=5 Score=33.23 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhccC-ccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 168 DYAVAMVLSRLAHG-LSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 168 e~~L~i~L~~La~g-~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
+.+++..|..-..+ .+..+++...|++++||+|.+......
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444455443333 689999999999999999998766543
No 72
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=65.22 E-value=13 Score=31.60 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455533 34444443 3478999999999999999999876654
No 73
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=65.16 E-value=6.3 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHhhh-c--cCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRL-A--HGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~L-a--~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..++-.+.|+|+ . .|.++..||..+|||..+|..+.++...-|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 578888888888884 3 6789999999999999999999888877775
No 74
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.90 E-value=6.8 Score=33.46 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+....+.+..++|..+|++++|++++++...
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3554 334556666666677889999999999999999876654
No 75
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=64.72 E-value=6.6 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhccC-ccHHHHhhhccCCcchhHHHHH
Q 012200 167 SDYAVAMVLSRLAHG-LSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 167 ~e~~L~i~L~~La~g-~s~~~la~~Fgvs~sTvsri~~ 203 (468)
-++++..++.-+..| .+....|..|||..+|+..-++
T Consensus 15 te~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 15 NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 467788899999999 8999999999999999865543
No 76
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=64.38 E-value=5.1 Score=33.30 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=30.8
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +.+++..|+.-..+.+..+++..+|++++|++++++...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 443 455666663234678999999999999999998875543
No 77
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=64.04 E-value=7.4 Score=32.32 Aligned_cols=40 Identities=10% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHHhhh---ccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 168 DYAVAMVLSRL---AHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 168 e~~L~i~L~~L---a~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+++..|+.+ ..+.+..++|..+|++++||++.++....
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34455556555 34568999999999999999998866543
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=64.00 E-value=13 Score=30.73 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+ ..+.+..+++..+|++++|++++++...
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 4555 444555555 6778999999999999999998876654
No 79
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=63.75 E-value=9.8 Score=30.78 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+++..|.. .+.+..+++..+|++++|+++.++....
T Consensus 35 ~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 35 LMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444433 4789999999999999999999887765
No 80
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=63.48 E-value=12 Score=31.40 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 466543 34444443 4567999999999999999999876654
No 81
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=63.22 E-value=9.4 Score=29.41 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcc--CccHHHHhhhccCCcchhHHHHHHH
Q 012200 168 DYAVAMVLSRLAH--GLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 168 e~~L~i~L~~La~--g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
+.+++-+|.-.+. +.+..+||..+||+++||.+.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556656654442 4688999999999999988876554
No 82
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=62.89 E-value=8.7 Score=29.96 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhccCccHHHH----hhhccCCcchhHHHHHHHHH
Q 012200 168 DYAVAMVLSRLAHGLSAKAL----ASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 168 e~~L~i~L~~La~g~s~~~l----a~~Fgvs~sTvsri~~~v~~ 207 (468)
+..++..|+. ..+.+..++ +..++++++|++++++....
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4445555543 346788899 99999999999999877655
No 83
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=62.86 E-value=6.5 Score=31.79 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 166 PSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 166 ~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
....++.++......+.++.+.+.+|+||.+++.++...+.+
T Consensus 35 va~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 35 VASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344689999999999999999999999999998877655543
No 84
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=62.72 E-value=5.9 Score=36.34 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHhhhcc--------------CccHHHHhhhccCCcchhHHHHHHHHHH-HHhhcCCccccCCCchhhh
Q 012200 163 LSLPSDYAVAMVLSRLAH--------------GLSAKALASRYSLEPYLISKITNMVTRL-LATKLYPEFIKIPISRRRL 227 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~~ 227 (468)
...+++++++-+|..++. ..+..++|...|+++.|++|++++..+. +.+ .....|... +.+.+
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~-d~~~L 222 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILD-KKKNKIIVY-NLGEL 222 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECSSEEEES-CHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE-eCCCEEEEe-cHHHH
Confidence 357899999999987652 3588999999999999999999887654 222 233444445 45555
Q ss_pred ccccc
Q 012200 228 IETTQ 232 (468)
Q Consensus 228 ~~i~~ 232 (468)
++++.
T Consensus 223 ~~~a~ 227 (250)
T 3e6c_C 223 KHLSE 227 (250)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55443
No 85
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=62.70 E-value=6.1 Score=35.44 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhhhccC-------------ccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHG-------------LSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g-------------~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..+++++++-+|..++.. .+..++|...|+++.|++|++++..
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 468899999999988642 3689999999999999999987664
No 86
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=62.51 E-value=1.6 Score=39.78 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||.+.+++...
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578888887777665 6899999999999999999888766543
No 87
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=62.39 E-value=7.1 Score=35.27 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhhhcc----------CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAH----------GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~----------g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
...+++++++-+|..++. ..+..++|...|+++.|++|++++..+
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457899999999999864 235789999999999999999877543
No 88
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.24 E-value=12 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+++..|. ..+.+..+++..+|++++|+++.++....
T Consensus 29 ~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 29 IRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444443 45579999999999999999999876654
No 89
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=61.77 E-value=6.5 Score=30.72 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=24.5
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+.+..+++..+|+|++||++.++...+
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56688999999999999999998866543
No 90
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=61.76 E-value=6.9 Score=39.86 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhh-hc--cCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSR-LA--HGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~-La--~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..++-.+.|+| |. .|.++..||..+|||..+|..+..+...-|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888888888 44 6789999999999999999999988887776
No 91
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=61.74 E-value=2.9 Score=37.50 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHhhhcc--------------CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH--------------GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..+.
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 35788999999988763 4688999999999999999999887543
No 92
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=61.63 E-value=13 Score=31.34 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCHH-HHHHHHHhhhcc-CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAH-GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~-g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++.. ..++..|+.-.. +.+..+++...+++++|++++++...
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35553 345555544433 37899999999999999999876654
No 93
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=61.43 E-value=7.3 Score=34.94 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=49.8
Q ss_pred ChhhHHHhcCCCHHHHHHHHHHhccccccC------CCCCCHHHHHHHHHhhhc--------------cCccHHHHhhhc
Q 012200 132 REAHWRSLYGLSYPVFTTVVEKLKPYIAAS------NLSLPSDYAVAMVLSRLA--------------HGLSAKALASRY 191 (468)
Q Consensus 132 ~d~~fr~~fRms~~~F~~L~~~L~p~l~~~------~~~l~~e~~L~i~L~~La--------------~g~s~~~la~~F 191 (468)
+.+.|...+.-.+.....++..+...+... -...+++++++-+|..++ ...+..++|...
T Consensus 108 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~l 187 (227)
T 3d0s_A 108 DRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLV 187 (227)
T ss_dssp EHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHH
T ss_pred eHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHh
Confidence 344555555545544444444443322210 123678999999888764 235789999999
Q ss_pred cCCcchhHHHHHHHHH
Q 012200 192 SLEPYLISKITNMVTR 207 (468)
Q Consensus 192 gvs~sTvsri~~~v~~ 207 (468)
|+++.|++|++++..+
T Consensus 188 g~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 188 GASRETVNKALADFAH 203 (227)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987654
No 94
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=60.40 E-value=18 Score=29.41 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++.. ..++..|+.- .+.+..+++..+|++++|++++++...
T Consensus 35 ~l~~~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp CCCHHHHHHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46653 3455555443 478999999999999999999876654
No 95
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=59.55 E-value=11 Score=28.33 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.5
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..++++.+|+|++||++.++....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478999999999999999998866543
No 96
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=58.81 E-value=11 Score=28.85 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=21.3
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
+...+.+++|+.||+|.+||.+.+...
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345578899999999999988876544
No 97
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=58.73 E-value=5.3 Score=34.05 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHhhhccCccHHHHhhhccC-CcchhHHHHHH
Q 012200 173 MVLSRLAHGLSAKALASRYSL-EPYLISKITNM 204 (468)
Q Consensus 173 i~L~~La~g~s~~~la~~Fgv-s~sTvsri~~~ 204 (468)
-.+.+++.|.+.++++..+|| |.+|+++++++
T Consensus 20 ~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 20 DICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 466778999999999999999 99999999876
No 98
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=58.67 E-value=13 Score=30.59 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 165 LPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 165 l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
++.. ..++..|+. ..+.+..+++..+|++++|++++++....
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 5553 334444433 34578999999999999999998766543
No 99
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.63 E-value=11 Score=30.98 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCCH-HHHHHHHHhhhcc-CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAH-GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~-g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+.-.. +.+..+++..+|++++|++++++...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 4555 4445555555433 68999999999999999999876654
No 100
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=58.49 E-value=6.2 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=24.2
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
-.+-..|.++.++|...|||++|+++|-
T Consensus 18 ~~R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 18 KVRKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3456689999999999999999999884
No 101
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=58.40 E-value=15 Score=30.31 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 28 ~lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp TCCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466543 34444433 3468999999999999999999876654
No 102
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=58.17 E-value=9.5 Score=31.36 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCH-HHHHHHHHhhhc-cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLA-HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La-~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++. +..++..|+.-. .+.+..+++..+|++++|++++++....
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3554 444555555443 4789999999999999999998866543
No 103
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=57.89 E-value=2.4 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.1
Q ss_pred ccHHHHhhhccCCcchhHHHH
Q 012200 182 LSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+..+||...|||++||++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHH
Confidence 478999999999999999986
No 104
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=57.89 E-value=7.4 Score=41.59 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHhhhc---cCccHHHHhhhccCCcchhHHHHHHHHHHHHh
Q 012200 163 LSLPSDYAVAMVLSRLA---HGLSAKALASRYSLEPYLISKITNMVTRLLAT 211 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~ 211 (468)
..+|+.++-.+.|+|+- .|.++..||..+|||..||..+.++....|-.
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 36899999888888763 78899999999999999999988776655543
No 105
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=57.89 E-value=6 Score=29.23 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=19.5
Q ss_pred ccHHHHhhhccCCcchhHHHH
Q 012200 182 LSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~ 202 (468)
.++..+|+.+||++++||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999976
No 106
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=57.85 E-value=8.4 Score=29.92 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=23.2
Q ss_pred CccHHHHhhhccCCcch-hHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYL-ISKITNMVT 206 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sT-vsri~~~v~ 206 (468)
+.+..+++..+|++++| ++++++...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 58999999999999999 999987654
No 107
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.69 E-value=16 Score=30.49 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++..+ .++..|+. ..+.+..+++..++++++|++++++....
T Consensus 38 ~lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455533 34444433 36789999999999999999998866543
No 108
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.40 E-value=11 Score=29.11 Aligned_cols=26 Identities=23% Similarity=0.127 Sum_probs=23.1
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.+..+++..+|++++|+++.++...
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57899999999999999999987664
No 109
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=57.06 E-value=11 Score=31.25 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+++.+ .++..|+. ..+.+..+++..++++++|++++++...
T Consensus 33 glt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp TCCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 455543 33333332 3467899999999999999999886654
No 110
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=56.97 E-value=14 Score=28.66 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+++..|.. ..+.+..+++..+|++++||+++++....
T Consensus 23 ~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 23 VRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444432 35678999999999999999999876543
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.77 E-value=11 Score=35.24 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..+|..++-.+.|. ..|.++.++|...|+|..||...+.+....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899888888885 49999999999999999999988877766654
No 112
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=56.40 E-value=30 Score=28.27 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 142 LSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 142 ms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++.+.|.-|++.- ++..++-+...=.+|-.|.+-+.++.++||+++..++.+++.-
T Consensus 30 vsee~F~LLlelS---------~IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~ 85 (111)
T 3m8j_A 30 MSEEQFFLLIGIS---------SIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLT 85 (111)
T ss_dssp SCHHHHHHHHHHS---------CCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC---------CCCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6778888888773 3444554555556889999999999999999999998876543
No 113
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.19 E-value=19 Score=29.69 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+++.+ .++..|+.- .+.+..+++..+|++++|++++++...
T Consensus 34 ~lt~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 34 DVTPEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp SSCHHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 466543 344444433 678999999999999999999876654
No 114
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.99 E-value=20 Score=29.67 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 4555 4445555544 3478999999999999999999876654
No 115
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=55.95 E-value=5.2 Score=37.15 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHhhhcc-------------CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH-------------GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+++++|+-+|..++. ..+..++|...|+++.|++|++++..+
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46889999999888764 236789999999999999999877653
No 116
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=55.73 E-value=12 Score=31.16 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.5
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+.+..++|..+|++++||+++++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567999999999999999999886654
No 117
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=55.71 E-value=4.2 Score=36.59 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhhcc--------------CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH--------------GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..+.
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 35788999999988762 2578999999999999999999886543
No 118
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=55.32 E-value=4.1 Score=36.22 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHhhhc-------cCccHHHHhhhccCCcchhHHHHHHHHHH-HHhhcCCccccCCCchhhhcccc
Q 012200 165 LPSDYAVAMVLSRLA-------HGLSAKALASRYSLEPYLISKITNMVTRL-LATKLYPEFIKIPISRRRLIETT 231 (468)
Q Consensus 165 l~~e~~L~i~L~~La-------~g~s~~~la~~Fgvs~sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~~~~i~ 231 (468)
.+++++++-+|..++ ...+..++|...|+++.|++|++++..+. +.+ .....|... +.+.+++++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~-~~~~~i~i~-d~~~L~~~a 212 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR-LGPGTVEVR-EAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE-EETTEEEES-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-ecCCEEEEe-CHHHHHHHh
Confidence 467889999998765 23478999999999999999999877644 221 233444444 444444433
No 119
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=55.10 E-value=13 Score=34.16 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..++..++-.+.| ++.|.++.+||...|||..||...+....+-+-
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688877765544 579999999999999999999988877766554
No 120
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=54.70 E-value=13 Score=31.36 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
++. +..++..|+.-..+.+..+++...|++++|++++++....
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 554 3445555544445789999999999999999998866543
No 121
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=54.59 E-value=5.3 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|+|++|++++.
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34578999999999999999999885
No 122
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.50 E-value=14 Score=30.55 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..++..|+.-..+.+..+++..+|++++||+++++....
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 334444443245789999999999999999998766543
No 123
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=53.88 E-value=5.5 Score=32.01 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHH--hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 169 YAVAMVL--SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 169 ~~L~i~L--~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+.+.-.| .|...|.++.++|.+.|||++|+++|=
T Consensus 35 ~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 35 EEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHH
Confidence 3344444 455689999999999999999999873
No 124
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=53.60 E-value=14 Score=30.36 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCH-HHHHHHHHhhhc-cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLA-HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La-~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+.-. .+.+..+++..++++++|++++++...
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 78 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS 78 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4655 444555555421 567899999999999999999886654
No 125
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=53.58 E-value=22 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.++.. ..++..|+. ..+.+..+++..+|++++|++++++.....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 46653 334444443 346799999999999999999988766543
No 126
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=53.53 E-value=13 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=26.1
Q ss_pred CCCH-HHHHHHHHhhhc-cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLA-HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La-~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++. +..++..|+.-. .+.+..+++..+|++++|++++++....
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3554 444555555543 5789999999999999999998876543
No 127
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=53.40 E-value=19 Score=31.22 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.4
Q ss_pred CCCH-HHHHHHHHhhhcc--CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAH--GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~--g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.++. +..++..|+.-.. |.+..+++...|++++|++++++.....
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4554 4556666665544 3899999999999999999998766543
No 128
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=53.35 E-value=5.6 Score=35.62 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhhhcc-----------CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 165 LPSDYAVAMVLSRLAH-----------GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 165 l~~e~~L~i~L~~La~-----------g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+++++++-+|..++. ..+..++|...|+++.|++|++++..+.
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4678889888876653 3477999999999999999999877654
No 129
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=53.27 E-value=18 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 26 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TCCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3554 3344444443 4567999999999999999999876554
No 130
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=53.26 E-value=15 Score=33.54 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..++..++-.+.| ++.|.++.+||...|+|..||...+....+-+-
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688887765544 579999999999999999999988877766554
No 131
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.22 E-value=5.6 Score=28.58 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.7
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|||+++++++.
T Consensus 12 r~~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 44578999999999999999999885
No 132
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=53.13 E-value=15 Score=30.56 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++.. ..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 37 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35553 344444443 3478999999999999999999876654
No 133
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=53.12 E-value=12 Score=36.17 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=29.5
Q ss_pred HHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 171 VAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.-+...|+..+.+..++|++||||+.||+|-+...-
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 335556777889999999999999999999886653
No 134
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=52.96 E-value=11 Score=28.46 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhcc----CCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYS----LEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTvsri~~~v~ 206 (468)
.++. +..++.+|+. ..+.+..+|+..++ ++++||+++++...
T Consensus 6 ~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~ 52 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLI 52 (82)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 3444 5556667766 55789999999986 78999988876554
No 135
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=52.96 E-value=10 Score=30.44 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=28.6
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+++..|. ..+.+..+++..+|++++|+++.++...+.
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 355789999999999999999998776554
No 136
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=52.92 E-value=15 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHhhhcc-------------CccHHHHhhhccCCcchhHHHHHHHHHH-HHhhcCCccccCCCchhhhcc
Q 012200 164 SLPSDYAVAMVLSRLAH-------------GLSAKALASRYSLEPYLISKITNMVTRL-LATKLYPEFIKIPISRRRLIE 229 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~~~~ 229 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..+. +.+ .....|... +.+.+++
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~-d~~~L~~ 193 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR-SGYGKIQLL-DLKGLKE 193 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEES-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-eCCCEEEEe-CHHHHHH
Confidence 35789999999988753 2478999999999999999999887543 221 223444444 4444443
No 137
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=52.91 E-value=7.3 Score=29.17 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 174 VLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 174 ~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
--++...|.++.++|...||++++++++-
T Consensus 16 k~~R~~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 16 KQYRKEKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34567789999999999999999999885
No 138
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=52.32 E-value=6 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.8
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...||++++++++.
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 44578999999999999999999885
No 139
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.20 E-value=17 Score=29.92 Aligned_cols=41 Identities=2% Similarity=0.061 Sum_probs=30.1
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 554 3445445544 4578999999999999999999876654
No 140
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=51.88 E-value=18 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++..+ .++..|+.- .+.+..+++..+|++++|++++++....
T Consensus 37 ~l~~~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHHS-SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466543 344444433 3789999999999999999998876543
No 141
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=51.85 E-value=8 Score=29.53 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.0
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+...|.++.++|...|||++++++|-
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 44589999999999999999999884
No 142
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=51.78 E-value=7.9 Score=29.30 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=23.2
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+-..|.++.++|...||++++++++.
T Consensus 26 ~r~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 26 HLRNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 344568999999999999999999886
No 143
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=51.78 E-value=15 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 40 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp TCCHHHHHHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355533 33333332 3467999999999999999999876654
No 144
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=51.44 E-value=7.7 Score=28.97 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.4
Q ss_pred ccCccHHHHhhhccCCcchhHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
..| ++.++|...||+++||+++.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 457 999999999999999999864
No 145
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=51.21 E-value=13 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 168 DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 168 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..+++..| -..+.+..+++..+|++++|+++.++...
T Consensus 23 r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 23 RWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp HHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444444 34567899999999999999999987654
No 146
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.19 E-value=17 Score=29.72 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.4
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 554 3334444443 3467999999999999999999876654
No 147
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.06 E-value=16 Score=30.61 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
++. +..++..|+.- .+.+..+++..+|++++|++++++....
T Consensus 42 lt~~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 42 MKTTELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp SBHHHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 443 33444444432 3689999999999999999998766543
No 148
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=50.85 E-value=13 Score=31.00 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+++ +..++..| -..+.+..+++..+|++++|++++++...
T Consensus 35 ~lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 35 GISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp TCCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3554 33444444 45678999999999999999999876654
No 149
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=50.78 E-value=12 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhhh-c-cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRL-A-HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~L-a-~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..++.++.+.+.+-+- . .|...++|+...+++++|+++++....
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3566555443333333 2 389999999999999999998876653
No 150
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=50.33 E-value=5.9 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.8
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...||+++|++++.
T Consensus 17 r~~~glsq~~lA~~~gis~~~is~~e 42 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKWC 42 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34578999999999999999999885
No 151
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=50.27 E-value=9.6 Score=28.72 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.8
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+...|.++.++|...||++++++++.+
T Consensus 20 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 20 VRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3445789999999999999999998864
No 152
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=50.17 E-value=17 Score=28.85 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=23.5
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..+..+++..+|+|++||++.+......
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788999999999999999988765543
No 153
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=50.00 E-value=20 Score=29.47 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 27 lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp CTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 443 3344444543 3467999999999999999998876554
No 154
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=49.84 E-value=12 Score=30.98 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.4
Q ss_pred CCCHH-HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+++. ..++..|+ .+|.+..+++..+|++++|++++++...
T Consensus 35 ~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 35 ALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp CCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45654 33444443 3448999999999999999999876654
No 155
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=49.75 E-value=24 Score=29.42 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=30.4
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+. ..+.+..+++...|++++|++++++...
T Consensus 38 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555 3445555544 3468999999999999999999876654
No 156
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=49.64 E-value=14 Score=32.24 Aligned_cols=65 Identities=17% Similarity=-0.005 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHhhhcc--C-----------ccHHHHhhhccCCcchhHHHHHHHHHH-HHhhcCCccccCCCchhhhcc
Q 012200 164 SLPSDYAVAMVLSRLAH--G-----------LSAKALASRYSLEPYLISKITNMVTRL-LATKLYPEFIKIPISRRRLIE 229 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~--g-----------~s~~~la~~Fgvs~sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~~~~ 229 (468)
..+++++++-+|..++. | .+..++|...|+++.|++|++++..+. +.+ .....|... +.+.+++
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~-d~~~L~~ 186 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA-TAYRRVYLL-DLAALER 186 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE-EETTEEEEC-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-ecCCEEEEe-CHHHHHH
Confidence 56889999999988763 2 478999999999999999999887654 222 223344444 4444444
Q ss_pred c
Q 012200 230 T 230 (468)
Q Consensus 230 i 230 (468)
+
T Consensus 187 ~ 187 (195)
T 3b02_A 187 E 187 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=49.59 E-value=23 Score=30.32 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..++..|+. ..+.+..+++...|++++|++++++...
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4554 3345555544 3478999999999999999999876554
No 158
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=49.54 E-value=20 Score=30.19 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 168 DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 168 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 52 q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 52 QFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp THHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555544 3578999999999999999999886654
No 159
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.48 E-value=22 Score=29.67 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++..+|++++||+++++...
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455543 34444443 3467999999999999999999876554
No 160
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=49.44 E-value=15 Score=33.03 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHhhhccC--ccHHHHhhhccCCcchhHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHG--LSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g--~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++.-++=.-.+.+|..| .++..+|..+|||++.|+|+++-
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 5788888888888999887 79999999999999999999853
No 161
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.32 E-value=19 Score=30.43 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 50 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 50 LSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 554 3344444443 3467999999999999999999876654
No 162
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=49.31 E-value=9.1 Score=27.97 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.7
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+...|.++.++|...||++++++++.
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34478999999999999999999885
No 163
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=48.92 E-value=28 Score=30.60 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCH-HHHHHHHHhhh-ccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRL-AHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 165 l~~-e~~L~i~L~~L-a~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
++. +..++..|+.. ..+.+..+++..+|++++|++++++..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 555 44455556554 357899999999999999999887554
No 164
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=48.74 E-value=15 Score=32.78 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 162 NLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 162 ~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+..+++.++...+...+..|.+...+|..+|+|+++|++++
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34688877777777788889999999999999999998876
No 165
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=48.66 E-value=17 Score=28.17 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.8
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..+++..+|++++|+++.++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999999999999999876654
No 166
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=48.62 E-value=20 Score=28.06 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.1
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+.+..+++..+|++++|+++.++.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45789999999999999999988766443
No 167
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=48.18 E-value=8 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.5
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|+++++++++.
T Consensus 14 r~~~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 14 RKKLKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34468899999999999999999885
No 168
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=47.97 E-value=21 Score=29.08 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++|++++++...
T Consensus 29 l~~~~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 29 ISLTRYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444 3334444433 3467999999999999999999876654
No 169
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=47.95 E-value=11 Score=34.18 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHhhhc--------------c-CccHHHHhhhccCCc-chhHHHHHHHHHH-HHhhcCCccccCCCchhh
Q 012200 164 SLPSDYAVAMVLSRLA--------------H-GLSAKALASRYSLEP-YLISKITNMVTRL-LATKLYPEFIKIPISRRR 226 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La--------------~-g~s~~~la~~Fgvs~-sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~ 226 (468)
..+++++++-+|..|+ . ..+..++|...|+++ .|++|+++++.+. +.+ .....|... +.+.
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~-~~~~~i~I~-d~~~ 214 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV-YKNSCFYVQ-NLDY 214 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE-EETTEEEES-CHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE-ecCCEEEEe-CHHH
Confidence 3578899998887654 2 567899999999999 5999999887543 221 223345544 4445
Q ss_pred hcccc
Q 012200 227 LIETT 231 (468)
Q Consensus 227 ~~~i~ 231 (468)
+++++
T Consensus 215 L~~~~ 219 (238)
T 2bgc_A 215 LKRYA 219 (238)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 54433
No 170
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=47.88 E-value=6.8 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred ccCccHHHHhhhccCCcchhHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
..|.++.++|...||++++++++.
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 468999999999999999999885
No 171
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=47.81 E-value=10 Score=31.37 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=24.4
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
-.+-..|.++.++|..+|||++|+++|-
T Consensus 78 ~~R~~~glsq~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 78 KVRKKLSLTQKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3456689999999999999999999884
No 172
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=47.70 E-value=7.1 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+...|.++.++|...||++++++++.
T Consensus 10 ~r~~~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 10 ERIRLSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 345578999999999999999999885
No 173
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=47.68 E-value=13 Score=33.44 Aligned_cols=44 Identities=16% Similarity=-0.027 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhhhc-------------cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLA-------------HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La-------------~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+++++++-+|..|+ ...+..++|...|+++.|++|++++..+
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3578999998886543 2357899999999999999999987654
No 174
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=47.55 E-value=10 Score=27.80 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.7
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|||+++++++.
T Consensus 16 r~~~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 16 ITQQNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34568999999999999999999885
No 175
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=47.49 E-value=33 Score=28.87 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCH-HHHHHHHHhhhc----cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLA----HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La----~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+++ +..++..|+... .+.+..+++...+++++|++++++...
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 554 333444444432 236899999999999999999987654
No 176
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=47.13 E-value=10 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.4
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|+++++++++.
T Consensus 22 r~~~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 22 RTAKGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 33478999999999999999999885
No 177
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.98 E-value=4.1 Score=29.36 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.9
Q ss_pred cCccHHHHhhhccCCcchhHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+.++.++|...|||+++|+++.
T Consensus 9 ~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 9 HFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HcCCHHHHHHHhCCCHHHHHHHH
Confidence 34589999999999999999873
No 178
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=46.92 E-value=23 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=23.7
Q ss_pred cCccHHHHhhhc-----cCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRY-----SLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~F-----gvs~sTvsri~~~v~~~ 208 (468)
...+..+|+..+ ++|.+||+|.++...+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 357889999999 99999999998766544
No 179
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.85 E-value=24 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+. ..+.+..+++..+|++++||+++++...
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444 3344444444 4578899999999999999999876654
No 180
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=46.71 E-value=15 Score=28.28 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=24.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..+++..+|++++|+++.++...+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999999876544
No 181
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=46.53 E-value=17 Score=29.31 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhcc----CCcchhHHHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYS----LEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTvsri~~~v~~~ 208 (468)
.++. +..++.+|+. ..+.+..+++..++ ++++||+++++.....
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 3444 4456666665 56789999999998 8899999998776543
No 182
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=46.53 E-value=11 Score=28.20 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...||++++++++-
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 44579999999999999999999885
No 183
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=46.38 E-value=8.2 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=22.6
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...|+++++++++.
T Consensus 19 r~~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34568999999999999999999885
No 184
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=46.29 E-value=24 Score=28.71 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=30.1
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ .++..|+. ..+.+..+++...|++++|++++++...
T Consensus 31 ~lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp TSCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 466543 34444433 3467999999999999999999876654
No 185
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=46.06 E-value=12 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=22.0
Q ss_pred ccCccHHHHhhhccCCcchhHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
..|.++.++|...|||++|++++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 679999999999999999999774
No 186
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=46.04 E-value=15 Score=33.75 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhcc-CccH--HHHhhhccCCcchhHHHHHHHHH
Q 012200 167 SDYAVAMVLSRLAH-GLSA--KALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 167 ~e~~L~i~L~~La~-g~s~--~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.++.++-+|+.|.. |.+. .++|..+|++++|+++.+++...
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46777888888863 6666 99999999999999998876554
No 187
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=45.75 E-value=9.6 Score=28.46 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.7
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+...|.++.++|...||++++++++-
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~e 48 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34478999999999999999999885
No 188
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=45.29 E-value=11 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=22.8
Q ss_pred hhccCccHHHHhhhcc--CCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYS--LEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fg--vs~sTvsri~~ 203 (468)
+-..|.++.++|...| +++++++++-+
T Consensus 17 r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 17 RTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 3346899999999999 99999998853
No 189
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=45.15 E-value=13 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHHHhhhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 172 AMVLSRLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 172 ~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...|.+|+. .++..+|+..||+.|||||+-+..
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 345556654 678899999999999999975544
No 190
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=45.03 E-value=25 Score=24.74 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=25.3
Q ss_pred HHHHHHHhhhc--cCccHHHHhhhc-----cCCcchhHHHHH
Q 012200 169 YAVAMVLSRLA--HGLSAKALASRY-----SLEPYLISKITN 203 (468)
Q Consensus 169 ~~L~i~L~~La--~g~s~~~la~~F-----gvs~sTvsri~~ 203 (468)
.+..+.+..+. ...+..+++..+ +||.+||+|.++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 34443343443 346788999999 999999999987
No 191
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=44.91 E-value=11 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.2
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+...|.++.++|...||+++|+++|-
T Consensus 38 ~R~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 38 IRRALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 344579999999999999999999884
No 192
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=44.71 E-value=9.6 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.6
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...||++++++++.
T Consensus 14 r~~~gls~~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 14 RKKLKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34568999999999999999999885
No 193
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=44.53 E-value=24 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.4
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..+++..+|++++|+++.++...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999877655
No 194
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=44.33 E-value=20 Score=28.53 Aligned_cols=29 Identities=3% Similarity=0.028 Sum_probs=23.9
Q ss_pred ccCccHHHHhhhc-cCCcchhHHHHHHHHH
Q 012200 179 AHGLSAKALASRY-SLEPYLISKITNMVTR 207 (468)
Q Consensus 179 a~g~s~~~la~~F-gvs~sTvsri~~~v~~ 207 (468)
..+.++.+++... |++++|+++.++...+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3457999999999 9999999988766543
No 195
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=44.19 E-value=16 Score=30.14 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
+++ +..++..|+. +|.+..+++..+|++++|++++++....
T Consensus 35 lt~~~~~iL~~l~~--~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 35 LSYLDFSILKATSE--EPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp CCHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 544 3334444433 3339999999999999999998766543
No 196
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.06 E-value=28 Score=31.26 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+++ +..++..|+.- .+.+..+|+..++++++|++++++...
T Consensus 45 gLt~~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 45 DLNINEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp TCCHHHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4655 44455555543 578999999999999999999876654
No 197
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=44.02 E-value=8.6 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+-..|.++.++|...||++++++++.+
T Consensus 26 R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345699999999999999999998863
No 198
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=43.91 E-value=12 Score=28.82 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.4
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+-..|.++.++|...||+++|++++.
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e 43 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 33468899999999999999999885
No 199
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.40 E-value=13 Score=27.69 Aligned_cols=27 Identities=37% Similarity=0.278 Sum_probs=22.9
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+-..|.++.++|...||++++++++-+
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 19 RKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 334789999999999999999998853
No 200
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=43.27 E-value=27 Score=26.54 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=22.1
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...+..+++..|+||..||.+-++...
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346788999999999999988875543
No 201
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=43.27 E-value=44 Score=31.27 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
..++..++-.+.| ++.|.++.+||...|||..||..++..+..-+-
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3688877665444 479999999999999999999988877765543
No 202
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=43.25 E-value=21 Score=31.05 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHh---hhc-----cCccHHHHhhhccCCcchhHHHHH
Q 012200 164 SLPSDYAVAMVLS---RLA-----HGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 164 ~l~~e~~L~i~L~---~La-----~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.++.+.+.++.+. .+. .|.+..++|...|||++|++++.+
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4777777666543 221 168999999999999999999887
No 203
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=42.99 E-value=4.2 Score=36.38 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=1.0
Q ss_pred CCCHHHHHHHHHhhhcc-------CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH-------GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~-------g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+++++++-+|..++. ..+..++|...|+++.|++|++++..+
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp CC-------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45778888888887762 457899999999999999999877653
No 204
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=42.86 E-value=30 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...++.++|+.+|+|++|+++.++...
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999998876654
No 205
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=42.85 E-value=9 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.4
Q ss_pred cHHHHhhhccCCcchhHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~ 203 (468)
+.++||+..|||.+||||+++
T Consensus 2 ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHc
Confidence 568999999999999999987
No 206
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=42.76 E-value=21 Score=28.87 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=24.8
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..+.+..+++..+|++++|+++.++...++
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 456789999999999999999988765443
No 207
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=42.74 E-value=1.2e+02 Score=23.60 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhccCc---cHHHHhhhccC-CcchhHHHHH
Q 012200 128 EAPLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAHGL---SAKALASRYSL-EPYLISKITN 203 (468)
Q Consensus 128 ~~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~g~---s~~~la~~Fgv-s~sTvsri~~ 203 (468)
.++++-+++-..++||+..|..++......-. ...--..++--+...|..+. +..+||...|- +.+..++.|+
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~---~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk 92 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSRGYSP---MAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYR 92 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCH---HHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCH---HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 34578889999999999999999987632100 01222455667777888775 89999999997 5667788876
Q ss_pred HHH
Q 012200 204 MVT 206 (468)
Q Consensus 204 ~v~ 206 (468)
+..
T Consensus 93 ~~~ 95 (108)
T 3mn2_A 93 DMF 95 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 208
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=42.63 E-value=18 Score=28.43 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=24.4
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+.+..+++..+|++++|+++.++...++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45789999999999999999998765544
No 209
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=42.38 E-value=23 Score=29.90 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
++. +..++..|+.- .+.+..+++..+|++++|++++++...
T Consensus 51 lt~~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp CCHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 554 34444455443 478999999999999999999886654
No 210
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.19 E-value=19 Score=32.11 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=42.9
Q ss_pred CHH-HHHHHHHhhhcc-------------CccHHHHhhhccCCcchhHHHHHHHHHH-HHhhcCCccccCCCchhhhccc
Q 012200 166 PSD-YAVAMVLSRLAH-------------GLSAKALASRYSLEPYLISKITNMVTRL-LATKLYPEFIKIPISRRRLIET 230 (468)
Q Consensus 166 ~~e-~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTvsri~~~v~~~-l~~~L~~~~I~~P~~~~~~~~i 230 (468)
+.. ++++-+|..++. ..+..++|...|+++.|++|++++..+. +.+ .....|... +.+.++++
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~-d~~~L~~~ 223 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE-VSPRSVTLL-DLAALEAL 223 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECSSCEEES-CHHHHHHC
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE-ecCCEEEEe-CHHHHHHH
Confidence 344 889888888764 3578999999999999999999877643 221 233444444 44444443
No 211
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=41.90 E-value=31 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...++.++|+.+|+|++|+++.+++..
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 46 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999998876654
No 212
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=41.70 E-value=14 Score=28.76 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=23.6
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+-..|.++.++|...|||++|++++.
T Consensus 32 lR~~~glTq~eLA~~~GiS~~tis~iE 58 (88)
T 3t76_A 32 LLIDRDMKKGELREAVGVSKSTFAKLG 58 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345679999999999999999999885
No 213
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.55 E-value=25 Score=28.70 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=24.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..+++..+|++++|+++.++....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999876653
No 214
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=41.50 E-value=20 Score=29.95 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=31.4
Q ss_pred CCH-HHHHHHHHhhhccCccHHHHhhhcc----CCcchhHHHHHHHH
Q 012200 165 LPS-DYAVAMVLSRLAHGLSAKALASRYS----LEPYLISKITNMVT 206 (468)
Q Consensus 165 l~~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTvsri~~~v~ 206 (468)
++. +..++.+||....+.+..+|+..++ ++.+||+++++...
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 443 5556666766545789999999997 89999988876554
No 215
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=41.48 E-value=8.5 Score=28.40 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.5
Q ss_pred cHHHHhhhccCCcchhHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~ 203 (468)
++..+|+.+||++++||+.++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999999863
No 216
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=41.30 E-value=17 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 174 VLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 174 ~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
--.+-..|.++.++|...||++++++++.+
T Consensus 19 ~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 19 QQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 334556789999999999999999998864
No 217
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=41.29 E-value=37 Score=25.80 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhhhccCc--cHHHHhhhccCCcchhHHHHHH
Q 012200 166 PSDYAVAMVLSRLAHGL--SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 166 ~~e~~L~i~L~~La~g~--s~~~la~~Fgvs~sTvsri~~~ 204 (468)
...+++.=++..|..|. +...||..+|++++.|.|++..
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666666777665 7889999999999888776543
No 218
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=41.01 E-value=8.8 Score=36.70 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred ccHHHHhhhccCCcchhHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+.++||+..|||.+||||+++
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln 24 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVN 24 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3678999999999999999986
No 219
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=41.00 E-value=37 Score=28.63 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=24.2
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999888766443
No 220
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=40.95 E-value=21 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 171 VAMVLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
+.-.|..++...++.++|...||++++++++-
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E 48 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIE 48 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHH
Confidence 55566666666689999999999999999885
No 221
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=40.80 E-value=20 Score=33.06 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 167 SDYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 167 ~e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.-++.+-.|..|+. +.+..+++...|++++|++|+++...+
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33455556666653 578999999999999999999876543
No 222
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=40.50 E-value=35 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.7
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
...++.++|..+|+|++|+++.+++..+
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999988766543
No 223
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.45 E-value=27 Score=28.92 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=23.6
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
...++.++|+.+|+|++|+++.++....
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999988876653
No 224
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.43 E-value=32 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=20.8
Q ss_pred hccCc---cHHHHhhhccCCcchhHHHHHHH
Q 012200 178 LAHGL---SAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 178 La~g~---s~~~la~~Fgvs~sTvsri~~~v 205 (468)
|.-|. +-+++|..||||++||.+.+...
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 44554 34689999999999998776443
No 225
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.37 E-value=33 Score=28.78 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=23.0
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..++.++|+.+|+|++|+++.++...+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999988766543
No 226
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=40.14 E-value=18 Score=31.01 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+++..|. ..+.+..+|+..+|++++||++.++...++
T Consensus 61 ~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 61 RRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 456789999999999999999998766544
No 227
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=39.85 E-value=22 Score=32.99 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 168 DYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 168 e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
-++.+-.|..|+. +.+..++++..|++++|++|+++...+
T Consensus 7 l~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 7 LKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555543 578999999999999999999877654
No 228
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=39.37 E-value=40 Score=28.37 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.2
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45789999999999999999988766443
No 229
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=39.33 E-value=18 Score=29.36 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=23.4
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..+.+..+++..+|++++|+++.++...
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~ 59 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457889999999999999999986654
No 230
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.32 E-value=10 Score=36.54 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=19.9
Q ss_pred ccHHHHhhhccCCcchhHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+.++||+..|||.+||||+++
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999985
No 231
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=39.06 E-value=13 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+-..|.+..++|...||+++|++++.+
T Consensus 17 r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 445688999999999999999999874
No 232
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=38.70 E-value=6.5 Score=35.09 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHhhhccCccHHHHhhhccCCcchhHHHHHH
Q 012200 171 VAMVLSRLAHGLSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+--....+..|.+...+|..+|||.+|+++++..
T Consensus 148 ~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4444556678999999999999999999998753
No 233
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=38.61 E-value=16 Score=28.80 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=25.5
Q ss_pred HHHHHHhh--hccCccHHHHhhhccCCcchhHHHH
Q 012200 170 AVAMVLSR--LAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 170 ~L~i~L~~--La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+.-.|.. ...|.++.++|...||++++++++-
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34444443 4478999999999999999999885
No 234
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=38.21 E-value=39 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...++.++|+.+|+|++|+++.+++..
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347899999999999999998876654
No 235
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=37.94 E-value=11 Score=36.59 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.0
Q ss_pred ccHHHHhhhccCCcchhHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+.++||+..|||.+||||+++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999985
No 236
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=37.90 E-value=14 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+-..|.++.++|...|||++++++|.+
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456799999999999999999999864
No 237
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=37.80 E-value=11 Score=29.61 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=23.9
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+-..|.++.++|...|||++|++++.+
T Consensus 26 ~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 26 ILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3445689999999999999999999864
No 238
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=37.59 E-value=17 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=23.1
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+-..|.++.++|...||+++|++++.
T Consensus 12 ~r~~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 12 MRKSEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 344578999999999999999998875
No 239
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=37.52 E-value=15 Score=27.62 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=18.9
Q ss_pred cHHHHhhhccCCcchhHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~ 203 (468)
+...+|..+|||++||+++++
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 388999999999999999975
No 240
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=37.33 E-value=28 Score=29.03 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=26.3
Q ss_pred Hhhhcc-CccHHHHhhhc-cCCcchhHHHHHHHHHH
Q 012200 175 LSRLAH-GLSAKALASRY-SLEPYLISKITNMVTRL 208 (468)
Q Consensus 175 L~~La~-g~s~~~la~~F-gvs~sTvsri~~~v~~~ 208 (468)
|+.|.. +.++.+++... |++++++++.++.....
T Consensus 41 L~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 41 LVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 334434 47899999999 79999999998776544
No 241
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=36.88 E-value=26 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.1
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
|..|+ +.+++.+|+..||+.|||||+-+..
T Consensus 18 l~~la-~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 18 LNKIA-MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHH-HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHH-HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 44444 4678899999999999999965444
No 242
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=36.68 E-value=35 Score=27.08 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhc-----cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 168 DYAVAMVLSRLA-----HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 168 e~~L~i~L~~La-----~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
+..++..|+..+ ...++..|++..+++++|++|.+.+...
T Consensus 18 q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 18 IVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp HHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 555666677773 3368999999999999999988766543
No 243
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=36.53 E-value=28 Score=32.53 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHhhhc---cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLA---HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+..-++.+-.|..|+ .+.+..+|+...|++++|++|+++....
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3555666777778876 3678999999999999999999876554
No 244
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=36.52 E-value=26 Score=28.27 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCCH-HHHHHHHHhhhccCccHHHHhhhcc----CCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAHGLSAKALASRYS----LEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTvsri~~~v~ 206 (468)
.+++ +..++.+||.. .+.+..+|+..++ ++.+||++++++..
T Consensus 7 ~Lt~~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp CCCHHHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 3554 55677777773 4789999999997 58999988876654
No 245
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.48 E-value=19 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=23.9
Q ss_pred hhhccCc---cHHHHhhhccCCcchhHHHHHHHH
Q 012200 176 SRLAHGL---SAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 176 ~~La~g~---s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
-.|..|. +.++++..||||++||++.+....
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455554 678999999999999998876544
No 246
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=36.46 E-value=28 Score=27.12 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.4
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+..+++..|+||..||.+-+...
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 34678899999999999998876544
No 247
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=36.41 E-value=32 Score=31.76 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 163 LSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 163 ~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
..+++.++.......+..|.+...+|..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45777666665656668899999999999999999988764
No 248
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=36.32 E-value=20 Score=30.28 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+-..|.++.++|...|||+++++++-+
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3466799999999999999999999864
No 249
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.25 E-value=40 Score=27.87 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCH-HHHHHHHHhhhc----cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLA----HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La----~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++. +..|.+.|.++. .+.+...+|...|++.++|.++++...
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3443 333555555542 226888999999999999988876654
No 250
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=36.18 E-value=27 Score=29.61 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=24.5
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+.++.+++...|++++++++.++...+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45799999999999999999988776543
No 251
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=35.84 E-value=18 Score=31.74 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.4
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.++..|.+...+|..+|+|.+|+++++.
T Consensus 153 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 153 NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4456899999999999999999998864
No 252
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=35.83 E-value=35 Score=31.74 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+..-++.+-.|..|+. +.+..+|+...|++++|++|+++....
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35555666667777763 578999999999999999999877654
No 253
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=35.79 E-value=18 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhhh--ccCccHHHHhhhccCCcchhHHHH
Q 012200 166 PSDYAVAMVLSRL--AHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 166 ~~e~~L~i~L~~L--a~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.....+.-.|..+ ..|.++.++|...||++++++++-
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444555555444 478999999999999999999884
No 254
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=35.64 E-value=33 Score=28.84 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.+.+..+++..+||+++||++.++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 456889999999999999999886654
No 255
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.58 E-value=22 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=20.1
Q ss_pred cHHHHhhhccCCcchhHHHHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
+.++++..||||++||.+.+.....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568899999999999888766543
No 256
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=35.38 E-value=21 Score=33.87 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhcCCc
Q 012200 165 LPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKLYPE 216 (468)
Q Consensus 165 l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L~~~ 216 (468)
+|++.+-++.|+++ .|.+++++|...|++..||...+......+...+...
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~r 162 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATE 162 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCE
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCc
Confidence 56677777666655 6899999999999999999888888777777554433
No 257
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=35.26 E-value=16 Score=29.20 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.8
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+-..|.++.++|...||+++|++++.+
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456789999999999999999998853
No 258
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=35.18 E-value=19 Score=28.71 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.8
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+-..|.++.++|...|||++|++++-+
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 17 LKKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455799999999999999999998853
No 259
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=34.95 E-value=41 Score=28.13 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.5
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.|.+...+|.+||+|..+|.+|+++.-..
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 49999999999999999999999776543
No 260
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.62 E-value=48 Score=28.80 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=29.2
Q ss_pred CCCHHH-HHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSDY-AVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++..+ +++-.|.. ....++.++|+.+|+|++||++.+++..
T Consensus 14 ~ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 14 HLDDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQ 56 (171)
T ss_dssp CCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455443 44444433 3357999999999999999998876653
No 261
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=34.41 E-value=16 Score=32.30 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=25.4
Q ss_pred HHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 174 VLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 174 ~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
--++-.+|.++.++|...|||++|+++|=
T Consensus 96 k~lR~~~glTQ~elA~~LGvsr~tis~yE 124 (170)
T 2auw_A 96 GDWMHRNNLSLTTAAEALGISRRMVSYYR 124 (170)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 44568899999999999999999998874
No 262
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=34.41 E-value=20 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+...|.++.++|...||++++++++-
T Consensus 48 ~R~~~glTQ~eLA~~lGis~~~Is~iE 74 (120)
T 2o38_A 48 VIDRARLSQAAAAARLGINQPKVSALR 74 (120)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 344578999999999999999999885
No 263
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=34.21 E-value=32 Score=27.23 Aligned_cols=29 Identities=3% Similarity=0.011 Sum_probs=23.6
Q ss_pred ccCccHHHHhhhc-cCCcchhHHHHHHHHH
Q 012200 179 AHGLSAKALASRY-SLEPYLISKITNMVTR 207 (468)
Q Consensus 179 a~g~s~~~la~~F-gvs~sTvsri~~~v~~ 207 (468)
..+.++.+++... |++++|+++.++...+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3457999999999 5999999998866543
No 264
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.09 E-value=21 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.4
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+-..|.++.++|...|||++|++++.
T Consensus 9 ~r~~~gltq~~lA~~~gis~~~i~~~e 35 (111)
T 1b0n_A 9 YRKEKGYSLSELAEKAGVAKSYLSSIE 35 (111)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345578999999999999999999885
No 265
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.97 E-value=1e+02 Score=29.31 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred hhHHHhcC---CCHHHHHHHHHHhcccc--------ccCCCCCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHH
Q 012200 134 AHWRSLYG---LSYPVFTTVVEKLKPYI--------AASNLSLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 134 ~~fr~~fR---ms~~~F~~L~~~L~p~l--------~~~~~~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
..+.+.|| +++.++...+...+... .++...++. .....+..-....+++.++..++||.+||++++
T Consensus 30 ~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~--~~i~~~v~~~~~~t~~~ia~~l~vs~~tV~r~L 107 (345)
T 3hot_A 30 RMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED--AELQALLDEDDAQTQKQLAEQLEVSQQAVSNRL 107 (345)
T ss_dssp HHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH--HHHHHHHHHCSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH--HHHHHHHHhCccchHHHHHHHHCCCHHHHHHHH
Q ss_pred HH
Q 012200 203 NM 204 (468)
Q Consensus 203 ~~ 204 (468)
++
T Consensus 108 ~~ 109 (345)
T 3hot_A 108 RE 109 (345)
T ss_dssp HH
T ss_pred HH
No 266
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.79 E-value=51 Score=25.57 Aligned_cols=75 Identities=8% Similarity=-0.075 Sum_probs=52.4
Q ss_pred CCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhcc-CccHHHHhhhccC-CcchhHHHHHHHH
Q 012200 129 APLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAH-GLSAKALASRYSL-EPYLISKITNMVT 206 (468)
Q Consensus 129 ~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~-g~s~~~la~~Fgv-s~sTvsri~~~v~ 206 (468)
+.++-+++-..++||+..|..++......-. ...--..++-.+...|.. +.+..+||...|- +.+..++.|++..
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~---~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~ 94 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF---QDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYY 94 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3677889999999999999999988632100 011123445555666654 6799999999997 6777788876654
No 267
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=33.76 E-value=1.4e+02 Score=24.69 Aligned_cols=74 Identities=8% Similarity=-0.006 Sum_probs=46.8
Q ss_pred CCChhhHHHhcCCCHHHHHHHHHHhcccc--c----cC--CCCCCHHHHHHHHHhhhc--cCccHHHHhhhc--------
Q 012200 130 PLREAHWRSLYGLSYPVFTTVVEKLKPYI--A----AS--NLSLPSDYAVAMVLSRLA--HGLSAKALASRY-------- 191 (468)
Q Consensus 130 ~l~d~~fr~~fRms~~~F~~L~~~L~p~l--~----~~--~~~l~~e~~L~i~L~~La--~g~s~~~la~~F-------- 191 (468)
-.+-.+.-..|++++.++...+....... . .. ...++.+..-. .+.++. ...+...++..+
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~-I~~~~~~~~~~s~~~i~~~l~~~~~~~~ 126 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEK-IAEYKRQNPTMFAWEIRDRLLAERVCDN 126 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHH-HHHHHHHCTTCCHHHHHHHHHHTTSSCT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHH-HHHHHHhCcchhHHHHHHHHHHhccccc
Confidence 35677888889999999999887754311 1 11 23455543322 223333 346777887766
Q ss_pred c--CCcchhHHHHHH
Q 012200 192 S--LEPYLISKITNM 204 (468)
Q Consensus 192 g--vs~sTvsri~~~ 204 (468)
| +|.+||+++++.
T Consensus 127 g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 127 DTVPSVSSINRIIRT 141 (149)
T ss_dssp TTSCCHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHH
Confidence 6 788999888753
No 268
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.52 E-value=51 Score=28.64 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=23.0
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...++.++|+.+|+|++|+++.+++..
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999988876654
No 269
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=33.51 E-value=24 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.0
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+...|.++.++|...|||++++++|-+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4556799999999999999999998864
No 270
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=33.42 E-value=20 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=23.8
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.+...|.++.++|...||+++++++|=+
T Consensus 15 ~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 15 KREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3455799999999999999999998853
No 271
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=33.38 E-value=42 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHhhhc---cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLA---HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La---~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+..-.|..|. .+.+..++|..||||++||++-+.....
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444455554 2478999999999999999998876543
No 272
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.31 E-value=48 Score=26.03 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=25.4
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
...+....+..++|..+|+|.+++++.|++.+
T Consensus 15 ~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 15 TEHFSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33445567888999999999999999998763
No 273
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.24 E-value=20 Score=29.21 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=23.5
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.+...|.++.++|...|||+++++++-
T Consensus 20 ~R~~~glsq~~lA~~~gis~~~is~~E 46 (126)
T 3ivp_A 20 ARKKQGLTREQVGAMIEIDPRYLTNIE 46 (126)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 345579999999999999999999885
No 274
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=33.15 E-value=33 Score=32.06 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 166 PSDYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 166 ~~e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
..-++.+-.|..|+. +.+..+++...|++++|++|+++.....
T Consensus 3 ~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~ 48 (260)
T 3r4k_A 3 GTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA 48 (260)
T ss_dssp CHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566667777774 4689999999999999999998776544
No 275
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=32.97 E-value=87 Score=25.02 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=52.9
Q ss_pred CCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhc-cCccHHHHhhhccC-CcchhHHHHHHHH
Q 012200 129 APLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLA-HGLSAKALASRYSL-EPYLISKITNMVT 206 (468)
Q Consensus 129 ~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La-~g~s~~~la~~Fgv-s~sTvsri~~~v~ 206 (468)
..++-+++-..++||+..|..++... . +.. ...--..++-.+...|. ++.+..+||...|- +.+..++.|++..
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~-G-~s~--~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~ 97 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE-E-TSY--SQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYY 97 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT-T-CCH--HHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc-C-CCH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36778899999999999999998774 2 110 01122345666666676 67899999999996 5777788877654
No 276
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=32.85 E-value=1.8e+02 Score=22.76 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=52.7
Q ss_pred CCCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhcc-CccHHHHhhhccC-CcchhHHHHHHH
Q 012200 128 EAPLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLAH-GLSAKALASRYSL-EPYLISKITNMV 205 (468)
Q Consensus 128 ~~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La~-g~s~~~la~~Fgv-s~sTvsri~~~v 205 (468)
..+++-+++-..++||+..|..++......-. ...--..++..+...|.. +.+..+||...|- +.+..++.|++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~---~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~ 97 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQYLGTVP---SKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNH 97 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34578899999999999999999988632100 011123445556666664 7899999999997 566677777665
Q ss_pred H
Q 012200 206 T 206 (468)
Q Consensus 206 ~ 206 (468)
.
T Consensus 98 ~ 98 (113)
T 3oio_A 98 F 98 (113)
T ss_dssp H
T ss_pred H
Confidence 4
No 277
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=32.82 E-value=66 Score=25.14 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhc-cCccHHHHhhhccC-CcchhHHHHHHHH
Q 012200 129 APLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLA-HGLSAKALASRYSL-EPYLISKITNMVT 206 (468)
Q Consensus 129 ~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La-~g~s~~~la~~Fgv-s~sTvsri~~~v~ 206 (468)
+.++-+++-..++||+..|..++......-. ...--..++..+...|. ++.+..+||...|- +.+..++.|++..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~---~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 95 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISV---LSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCT 95 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999987532100 01122345666666666 67899999999997 4666777776654
No 278
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.69 E-value=26 Score=32.05 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhc-cCccH--HHHhhhccCCcchhHHHHHHHHHH
Q 012200 168 DYAVAMVLSRLA-HGLSA--KALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 168 e~~L~i~L~~La-~g~s~--~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+.++.+|+.+. .|.+. .++|..+|++++|+++++++....
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 51 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD 51 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 466777888875 35555 899999999999999988765443
No 279
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.66 E-value=32 Score=31.43 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=16.9
Q ss_pred HHHhhhccCCcchhHHHHHHH
Q 012200 185 KALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 185 ~~la~~Fgvs~sTvsri~~~v 205 (468)
++++..||||+++|...+...
T Consensus 32 ~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 32 RALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 478999999999998776543
No 280
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.57 E-value=9.4 Score=36.56 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccHHHHhhhccCCcchhHHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
.+.++||+..|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999875
No 281
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=32.50 E-value=9.4 Score=36.52 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++||+..|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999999875
No 282
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=32.27 E-value=25 Score=31.60 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.4
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
...+..|.+...++..+|+|.+|+.+++.
T Consensus 169 ~~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 169 VEMLEEGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34455899999999999999999998863
No 283
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=32.25 E-value=35 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+..-++.+-.|..|+. +.+..+++...|++++|++|+++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~ 63 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL 63 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35555666667777763 5789999999999999999998876543
No 284
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=31.75 E-value=9.8 Score=36.83 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++||+..|||.+||||+++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 6789999999999999999875
No 285
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=31.74 E-value=21 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=28.7
Q ss_pred CHHHHHHHHHhhhc--cCccHHHHhhhccCCcchhHHHH
Q 012200 166 PSDYAVAMVLSRLA--HGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 166 ~~e~~L~i~L~~La--~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.....+.-.|..++ .|.++.++|...|||+++++++-
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34555665555544 78999999999999999999885
No 286
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.45 E-value=10 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccHHHHhhhccCCcchhHHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
.+.++||+..|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999864
No 287
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.20 E-value=86 Score=24.66 Aligned_cols=74 Identities=7% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCChhhHHHhcCCCHHHHHHHHHHhcccc---c---c--CCCCCCHHHHHHHHHhhhc--cCccHHHHhhhc---c----
Q 012200 130 PLREAHWRSLYGLSYPVFTTVVEKLKPYI---A---A--SNLSLPSDYAVAMVLSRLA--HGLSAKALASRY---S---- 192 (468)
Q Consensus 130 ~l~d~~fr~~fRms~~~F~~L~~~L~p~l---~---~--~~~~l~~e~~L~i~L~~La--~g~s~~~la~~F---g---- 192 (468)
-++-.+.-..|++++.++...+....... . . ....++.+..- ..+.++. ...+...++..+ |
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~-~i~~~~~~~~~~s~~~i~~~l~~~g~~~~ 111 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIEN-RIEEYKRSSPGMFSWEIREKLIREGVCDR 111 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHH-HHHHTTTTCTTCCHHHHHHHHHHTSSSCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHH-HHHHHHHhCcchHHHHHHHHHHHcCCccc
Confidence 45677888899999999998887754311 1 1 12235543322 2233343 346788888877 7
Q ss_pred ---CCcchhHHHHHH
Q 012200 193 ---LEPYLISKITNM 204 (468)
Q Consensus 193 ---vs~sTvsri~~~ 204 (468)
+|.+||+++++.
T Consensus 112 ~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 112 STAPSVSAISRLVRG 126 (128)
T ss_dssp TTCCCHHHHHHHC--
T ss_pred cCCcCHHHHHHHHHh
Confidence 588999888653
No 288
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=31.12 E-value=34 Score=30.04 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLA 210 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~ 210 (468)
.++..+. -.|.+|+.|.+..+++...++|..||..++..+.+-+.
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3666543 35677889999999999999999999988877665543
No 289
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=31.04 E-value=10 Score=36.44 Aligned_cols=23 Identities=17% Similarity=-0.051 Sum_probs=0.0
Q ss_pred ccHHHHhhhccCCcchhHHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
.+.++||+..|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 36789999999999999999874
No 290
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=31.00 E-value=25 Score=28.95 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=19.4
Q ss_pred cHHHHhhhccCCcchhHHHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.++++..||||+.||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356889999999999988876554
No 291
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=30.76 E-value=28 Score=27.73 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=21.6
Q ss_pred ccCccHHHHhhhccCCcchhHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
..|.++.++|...||+++++++|-
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 568999999999999999998874
No 292
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=30.75 E-value=10 Score=36.60 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccHHHHhhhccCCcchhHHHHHH
Q 012200 182 LSAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 182 ~s~~~la~~Fgvs~sTvsri~~~ 204 (468)
.+.++||...|||.+||||+++.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 36789999999999999999875
No 293
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.68 E-value=11 Score=36.25 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++||+..|||.+||||+++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5789999999999999999875
No 294
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=30.64 E-value=41 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=24.5
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
|.++..+|+..+++++|+++.++...+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988877
No 295
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=30.64 E-value=60 Score=25.41 Aligned_cols=75 Identities=8% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhc-cCccHHHHhhhccC-CcchhHHHHHHHH
Q 012200 129 APLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLA-HGLSAKALASRYSL-EPYLISKITNMVT 206 (468)
Q Consensus 129 ~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La-~g~s~~~la~~Fgv-s~sTvsri~~~v~ 206 (468)
..++-+++-..++||+..|..++......-. ...--..++--+...|. ++.+..+||...|- +.+..++.|++..
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~---~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 96 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKEMGEHF---TDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHT 96 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHh
Confidence 3677888999999999999999987632100 01112344555555564 56799999999997 6777788877654
No 296
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.58 E-value=46 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=23.8
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
.+....+..++|..+|+|.+++++.|++.
T Consensus 14 ~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 14 NWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455677899999999999999999875
No 297
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=30.49 E-value=27 Score=27.82 Aligned_cols=39 Identities=5% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhccCccHHHHhhhcc----CCcchhHHHHHHHH
Q 012200 167 SDYAVAMVLSRLAHGLSAKALASRYS----LEPYLISKITNMVT 206 (468)
Q Consensus 167 ~e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTvsri~~~v~ 206 (468)
.+..++.+||. ..+.+..+|++.++ ++.+||.+++++..
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 35567788887 45789999999986 56889888876554
No 298
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=30.45 E-value=41 Score=30.42 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHhhhc---cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 169 YAVAMVLSRLA---HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 169 ~~L~i~L~~La---~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
+..+-+++.|. .+.+..++|..+|++++|+++.+++...
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~ 46 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLA 46 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34455666664 3468999999999999999998876544
No 299
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.90 E-value=11 Score=36.48 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++||...|||.+||||+++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 5689999999999999999864
No 300
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=29.87 E-value=40 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=30.0
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhcC
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVTRLLATKLY 214 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L~ 214 (468)
+...++...|+..++|++++|+.++..-+.+-..|.
T Consensus 13 ~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf 48 (294)
T 1ixc_A 13 AEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLL 48 (294)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCB
T ss_pred HHcCCHHHHHHHhCCCcchHHHHHHHHHHHHCCEEE
Confidence 334489999999999999999999999888865543
No 301
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=29.46 E-value=56 Score=30.37 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=24.4
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
.+.+..++|..+|++++|++++++...+
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4688999999999999999999877654
No 302
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=29.38 E-value=53 Score=26.13 Aligned_cols=36 Identities=6% Similarity=-0.034 Sum_probs=27.7
Q ss_pred HHHHHhhhccCccHHHHhhhc-cCCcchhHHHHHHHHHH
Q 012200 171 VAMVLSRLAHGLSAKALASRY-SLEPYLISKITNMVTRL 208 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~F-gvs~sTvsri~~~v~~~ 208 (468)
++..|. ..+.++.+++... |++++|+++.++.....
T Consensus 27 IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 27 LMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp HHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 444444 3568999999999 99999999998766544
No 303
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.36 E-value=31 Score=28.69 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.9
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+.++++..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4568899999999999877644
No 304
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.64 E-value=22 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=17.6
Q ss_pred cHHHHhhhccCCcchhHHHH
Q 012200 183 SAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~ 202 (468)
+.++++..||||++||++.+
T Consensus 37 s~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999998775
No 305
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=28.34 E-value=27 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=19.0
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+..+++..+|+|++|+.+.++.
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 5678999999999999998764
No 306
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=27.99 E-value=44 Score=29.78 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 169 YAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 169 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
.+++-.|. ..+.+..++|..+|+|++||++.++..
T Consensus 23 ~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 23 RKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp HHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34544454 356789999999999999999887554
No 307
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=27.95 E-value=31 Score=28.52 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.4
Q ss_pred cHHHHhhhccCCcchhHHHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.++++..||||++||.+.+....
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457889999999999988775543
No 308
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=27.87 E-value=57 Score=28.83 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.8
Q ss_pred CccHHHHhhhccCCcchhHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
+.+.+++|..+|++.+|+++.++..
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 4789999999999999887776544
No 309
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=27.87 E-value=37 Score=30.28 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLL 209 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l 209 (468)
.++..+. -.|.+|+.|.+..+++...++|..||..++..+.+-+
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4676554 3567789999999999999999999988877655443
No 310
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=27.57 E-value=47 Score=30.48 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=30.2
Q ss_pred HhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhcC
Q 012200 175 LSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKLY 214 (468)
Q Consensus 175 L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L~ 214 (468)
+.-++...++...|+..++|++++|+.++..-+.+-..|.
T Consensus 12 f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf 51 (306)
T 3fzv_A 12 FVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLF 51 (306)
T ss_dssp HHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC
T ss_pred HHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCCeeE
Confidence 3334445589999999999999999999999888765554
No 311
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.08 E-value=72 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.2
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..++.++|..+|+|.+||++.+++..
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKME 42 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999999999999988876654
No 312
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=27.04 E-value=70 Score=24.97 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred cCccHHHHhhhccCCcchhHHHHHHH
Q 012200 180 HGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 180 ~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
...+..++|..+|+|.+++++.|++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677889999999999999999875
No 313
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=26.60 E-value=66 Score=25.64 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHhhhccC-cc--HHHHhhhc-cCCcchhHHHHHHHHHH
Q 012200 174 VLSRLAHG-LS--AKALASRY-SLEPYLISKITNMVTRL 208 (468)
Q Consensus 174 ~L~~La~g-~s--~~~la~~F-gvs~sTvsri~~~v~~~ 208 (468)
.|+.|..| .+ +.+++..+ |++++++++.++...+.
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 34445555 45 89999999 99999999988766544
No 314
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.32 E-value=44 Score=28.99 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLL 209 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l 209 (468)
.++..++- .|.++..|.+...++..+++|..||..++..+.+-+
T Consensus 142 ~Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 142 SLTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35554433 355678999999999999999999988776665544
No 315
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=25.74 E-value=60 Score=25.68 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=22.3
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
....+..++|..+|+|..++++.|++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345677889999999999999998875
No 316
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=25.70 E-value=15 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHhhhccCccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 174 VLSRLAHGLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 174 ~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
....+..|.+...+|..+|+|.+|+++++...-.
T Consensus 151 i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 151 AGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 3445668999999999999999999998765433
No 317
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=25.25 E-value=15 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhccCccHHHHhhhccCCcchhHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKI 201 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri 201 (468)
+...|.++.++|...|+|++|++++
T Consensus 10 R~~~gltq~elA~~lgis~~~vs~~ 34 (158)
T 2p5t_A 10 RKTHDLTQLEFARIVGISRNSLSRY 34 (158)
T ss_dssp -------------------------
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456889999999999999999998
No 318
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=25.10 E-value=32 Score=30.99 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=23.0
Q ss_pred hhccCccHHHHhhhccCCcchhHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
....|.++.++|...|+|+++|+++.
T Consensus 39 l~~~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 39 LQQHNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCChHHHHHHH
Confidence 34578999999999999999999994
No 319
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.05 E-value=30 Score=28.70 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred hhhccCccHHHHhhhccCCcchhHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYLISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sTvsri~ 202 (468)
.|-..|.++.++|++.|+|+++++++=
T Consensus 11 ~R~~~gltq~elA~~~gis~~~is~iE 37 (130)
T 3fym_A 11 RRERLGMTLTELEQRTGIKREMLVHIE 37 (130)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 455689999999999999999999873
No 320
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=24.86 E-value=29 Score=32.03 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHhhhccCccHHHHhhhccCCcchhHHHHH
Q 012200 172 AMVLSRLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 172 ~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
.|--++...|.++.+||..-|||+++||++.+
T Consensus 35 ~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 35 MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34456677899999999999999999999975
No 321
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=24.18 E-value=47 Score=29.48 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhhhccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
.++..+.- .|.+|+.|.+...++...++|..||..++..+
T Consensus 159 ~Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l 198 (225)
T 3klo_A 159 KLTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNV 198 (225)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 36665443 45668889999999999999999998877554
No 322
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.05 E-value=41 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.7
Q ss_pred hhhccCccHHHHhhhccCCcch----hHHHH
Q 012200 176 SRLAHGLSAKALASRYSLEPYL----ISKIT 202 (468)
Q Consensus 176 ~~La~g~s~~~la~~Fgvs~sT----vsri~ 202 (468)
.+...|.++.++|...||++++ ++++-
T Consensus 9 ~R~~~glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 9 ARLRAGISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 3456799999999999999999 77764
No 323
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=24.01 E-value=59 Score=27.36 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=30.3
Q ss_pred HHHHHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhh
Q 012200 171 VAMVLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATK 212 (468)
Q Consensus 171 L~i~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~ 212 (468)
+-+++.. +...++...|...|+|+++|++.+...-..+-..
T Consensus 29 L~~f~av-~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~~ 69 (135)
T 2ijl_A 29 VELMQLI-AETGSISAAGRAMDMSYRRAWLLVDALNHMFRQP 69 (135)
T ss_dssp HHHHHHH-HHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHHH-HHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCe
Confidence 3333333 3345888999999999999999998887776533
No 324
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=23.98 E-value=58 Score=30.66 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhhhcc---CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPSDYAVAMVLSRLAH---GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.++.-++.+-.|..|+. +.+..+|+...|++++|++|++......
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~ 72 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL 72 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34555666667777763 5789999999999999999998776544
No 325
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.84 E-value=56 Score=30.41 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCH-HHHHHHHHhhhcc-CccHHHHhhhccCCcchhHHHHHHHHHH
Q 012200 164 SLPS-DYAVAMVLSRLAH-GLSAKALASRYSLEPYLISKITNMVTRL 208 (468)
Q Consensus 164 ~l~~-e~~L~i~L~~La~-g~s~~~la~~Fgvs~sTvsri~~~v~~~ 208 (468)
.+++ +-.++..|+.-.. +.+..+++...+++++|++++++.....
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 4655 4445555554442 4799999999999999999998776543
No 326
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=23.56 E-value=69 Score=26.05 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.0
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVTR 207 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~~ 207 (468)
..+..++|..+|++++++.+++.....
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357789999999999999988765543
No 327
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=23.52 E-value=18 Score=31.34 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=0.5
Q ss_pred CCHHHHHHHHHhhhc---cCccHHHHhhhccCCcchhHHHHHHH
Q 012200 165 LPSDYAVAMVLSRLA---HGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 165 l~~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
.+++++++-+|..+. ...+..++|...|+++.|++|+.++.
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp C-------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 456677776666543 34678999999999999999998764
No 328
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.52 E-value=95 Score=23.92 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.9
Q ss_pred CccHHHHhhhccCCcchhHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
..+..++|..+|+|.+++++.|++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5677899999999999999998876
No 329
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.82 E-value=70 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhc--cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 168 DYAVAMVLSRLA--HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 168 e~~L~i~L~~La--~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
..++.-++.++. .+.+..++|..+|+|.++.++.|++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445666666675 567889999999999999999987754
No 330
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=22.45 E-value=29 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.6
Q ss_pred cHHHHhhhccCCcchhHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNM 204 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~ 204 (468)
+..++|..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 5678999999999999888643
No 331
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=22.08 E-value=35 Score=28.13 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=18.4
Q ss_pred cHHHHhhhccCCcchhHHHHHHHH
Q 012200 183 SAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 183 s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.+.+|..||||++||.+.+....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456899999999999988875543
No 332
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=21.82 E-value=79 Score=25.69 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=22.4
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMV 205 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v 205 (468)
....+..++|..+|+|.+++++.|++.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345677889999999999999999875
No 333
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=21.61 E-value=52 Score=26.50 Aligned_cols=23 Identities=0% Similarity=0.017 Sum_probs=20.3
Q ss_pred CccHHHHhhhccCCcchhHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
..+..++|..-|||.+||.|..+
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHH
Confidence 57889999999999999988764
No 334
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.48 E-value=44 Score=29.16 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.2
Q ss_pred hhccCccHHHHhhhccCCcchhHHHHH
Q 012200 177 RLAHGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 177 ~La~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+...|.++.++|.+.|||+++++++-+
T Consensus 20 r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 20 RKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344689999999999999999998864
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.48 E-value=1.2e+02 Score=25.47 Aligned_cols=45 Identities=4% Similarity=0.009 Sum_probs=26.9
Q ss_pred CCCCHHHH-HHHHHhhhccCccHHHHhhhc-----cCCcchhHHHHHHHHH
Q 012200 163 LSLPSDYA-VAMVLSRLAHGLSAKALASRY-----SLEPYLISKITNMVTR 207 (468)
Q Consensus 163 ~~l~~e~~-L~i~L~~La~g~s~~~la~~F-----gvs~sTvsri~~~v~~ 207 (468)
..+++..+ ++-.|.--....+..+|...+ ++|.+||+|.++...+
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 34555433 333333323346777777666 8999999988765543
No 336
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=21.27 E-value=59 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHhhhccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 174 VLSRLAHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 174 ~L~~La~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
.+..++...++...|+..+||++++|+.++..-+.+-..|
T Consensus 10 ~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~~L 49 (306)
T 3hhg_A 10 VFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNL 49 (306)
T ss_dssp HHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCee
Confidence 3344445568999999999999999999999988886544
No 337
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=21.23 E-value=61 Score=29.22 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=26.0
Q ss_pred HHHHHhhhc--cCccHHHHhhhccCCcchhHHHHH
Q 012200 171 VAMVLSRLA--HGLSAKALASRYSLEPYLISKITN 203 (468)
Q Consensus 171 L~i~L~~La--~g~s~~~la~~Fgvs~sTvsri~~ 203 (468)
+.-.|..+. .|.++.++|...|+|++|++++.+
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 444444443 578999999999999999999875
No 338
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.90 E-value=1.4e+02 Score=27.63 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=31.4
Q ss_pred CCCHH-HHHHHHHhhhc-cCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 164 SLPSD-YAVAMVLSRLA-HGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 164 ~l~~e-~~L~i~L~~La-~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
.++.. ..++..||.-. .|.+..+++...++..+|+++++++..
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe 75 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV 75 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 46654 34555555532 368999999999999999998876553
No 339
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.75 E-value=1.3e+02 Score=24.37 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCCChhhHHHhcCCCHHHHHHHHHHhccccccCCCCCCHHHHHHHHHhhhc-cCccHHHHhhhccCC-cchhHHHHHHHH
Q 012200 129 APLREAHWRSLYGLSYPVFTTVVEKLKPYIAASNLSLPSDYAVAMVLSRLA-HGLSAKALASRYSLE-PYLISKITNMVT 206 (468)
Q Consensus 129 ~~l~d~~fr~~fRms~~~F~~L~~~L~p~l~~~~~~l~~e~~L~i~L~~La-~g~s~~~la~~Fgvs-~sTvsri~~~v~ 206 (468)
.+++-+++-..++||+..|..++......-. ...--+.++-.+...|. ++.+..+||...|-+ .+..++.|++..
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~---~~~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 102 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKETGHSL---GQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYF 102 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3577888999999999999999987632100 01112345556666666 578999999999974 677777776654
Q ss_pred H
Q 012200 207 R 207 (468)
Q Consensus 207 ~ 207 (468)
.
T Consensus 103 G 103 (129)
T 1bl0_A 103 D 103 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 340
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.74 E-value=53 Score=28.03 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=22.8
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHH
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+...+..++|..||+|+++|++.+....
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~ 52 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLE 52 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3446789999999999999998776654
No 341
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.46 E-value=1.1e+02 Score=25.56 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=21.2
Q ss_pred CccHHHHhhhccCCcchhHHHHHHHH
Q 012200 181 GLSAKALASRYSLEPYLISKITNMVT 206 (468)
Q Consensus 181 g~s~~~la~~Fgvs~sTvsri~~~v~ 206 (468)
+.+...+|.+.|++..+|.+++...+
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45788999999999999888776554
No 342
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=20.37 E-value=61 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=29.3
Q ss_pred ccCccHHHHhhhccCCcchhHHHHHHHHHHHHhhc
Q 012200 179 AHGLSAKALASRYSLEPYLISKITNMVTRLLATKL 213 (468)
Q Consensus 179 a~g~s~~~la~~Fgvs~sTvsri~~~v~~~l~~~L 213 (468)
+...++...|+..+||++++|+.++..-+.+-..|
T Consensus 22 ~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~~L 56 (310)
T 2esn_A 22 YRHRNVGTAASELAISASAFSHALGRLRQGLDDEL 56 (310)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCCcc
Confidence 33448999999999999999999999988876444
Done!