BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012202
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 204/356 (57%), Gaps = 5/356 (1%)
Query: 24 QTLIKVGYWDSGDGFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVK 83
QT++K YW FP++D++ +LFTHL C FAD+NS T ++++S +++ +FS FT TV+
Sbjct: 2 QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 84 IKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSAN 143
+NPS+ TLLSIGGG + I++AR YGF GLDL W +
Sbjct: 62 RRNPSVKTLLSIGGG-IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 144 TSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
++ + N G L +EWR+AV EA ++S + +L+L A V +S + YPV ++ L+W
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDW 179
Query: 204 VHVMTTGYSKPTWTNFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFA 262
V++M + P W+ TG AAL+DP N+ + + G WI+ GL A K VL P+YG+A
Sbjct: 180 VNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYA 239
Query: 263 WTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
W L + A TG A+ DG + Y +I+ I + G +YNST V +YC G
Sbjct: 240 WRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNG--ATTVYNSTVVGDYCYAGTN 297
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAEEDNKNRQNKRLL 378
W G+DD +++ KV YAK++ L GY+ W V D LSRAA++ + R +
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAWDATTATTRTI 353
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 254 bits (649), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 10/345 (2%)
Query: 27 IKVGYWDSGDGFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKN 86
+K GYW G +++++ LFTHL C FAD+N +L +SP +++ F FT TV+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
PS+ T LSI GG N I++AR GF GLDL W ++
Sbjct: 64 PSVKTFLSIAGG-RANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHV 206
D N+G L EWR A++ EAR NS ++ L+LTA V++SP YPV+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 MTTGYSKPTWT-NFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWT 264
M + P W+ + T +HA L+DP N VS ++ GI WI+ G+ KLVL +PFYG+AW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---LYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGK 321
LV +G+ A A G + DDG +TY I+++I +YN+T V +YC G
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGS 298
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
W +DD + VR KV+Y K + L GY+ W V+ D W LSR A++
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 10/345 (2%)
Query: 27 IKVGYWDSGDGFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKN 86
+K GYW G +++++ LFTHL C FAD+N +L +SP +++ F FT TV+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
PS+ T LSI GG N I++AR GF GLDL W ++
Sbjct: 64 PSVKTFLSIAGG-RANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHV 206
D N+G L EWR A++ EAR NS ++ L+LTA V++SP YPV+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 MTTGYSKPTWT-NFTGAHAALYDP-NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWT 264
M + P W+ + T +HA L+DP N VS ++ GI WI+ G+ KLVL +PFYG+AW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---LYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGK 321
LV +G+ A A G + DDG +TY I+++I +YN+T V +YC G
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGS 298
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
W +DD + VR KV+Y K + L GY+ W V+ D W LSR A++
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 158/338 (46%), Gaps = 31/338 (9%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D++ +L THL+ FA + T ++LS + ++E + +K NP + TLL+IGG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N I+ R Y F GLDL W + + + DK
Sbjct: 78 WNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTT 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L ++ A EA+ S + +L+L+A V A Y VD I Q L++V++M +
Sbjct: 137 LVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 PTWTNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W TG ++ LY S N + + +W+E+G A KL+L +P YG ++TL
Sbjct: 196 -SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMPTYGRSFTLAS 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEI---KNHIKNYGPNVRVMYNSTYVVNYCSI 319
D +GA AT GP + G++ Y E+ K K + +V Y + N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G VW + D +
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 158/338 (46%), Gaps = 31/338 (9%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D++ +L THL+ FA + T ++LS + ++E + +K NP + TLL+IGG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N I+ R Y F GLDL W + + + DK
Sbjct: 78 WNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTT 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L ++ A EA+ S + +L+L+A V A Y VD I Q L++V++M +
Sbjct: 137 LVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 PTWTNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W TG ++ LY S N + + +W+++G A KL+L +P YG ++TL
Sbjct: 196 -SWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLAS 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEI---KNHIKNYGPNVRVMYNSTYVVNYCSI 319
D +GA AT GP + G++ Y E+ K K + +V Y + N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G VW + D +
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 158/338 (46%), Gaps = 31/338 (9%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D++ +L THL+ FA + T ++LS + ++E + +K NP + TLL+IGG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N I+ R Y F GLDL W + + + DK
Sbjct: 78 WNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTT 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L ++ A EA+ S + +L+L+A V A Y VD I Q L++V++M +
Sbjct: 137 LVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 PTWTNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W TG ++ LY S N + + +W+++G A KL+L +P YG ++TL
Sbjct: 196 -SWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLAS 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEI---KNHIKNYGPNVRVMYNSTYVVNYCSI 319
D +GA AT GP + G++ Y E+ K K + +V Y + N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G VW + D +
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 158/338 (46%), Gaps = 31/338 (9%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D++ +L THL+ FA + T ++LS + ++E + +K NP + TLL+IGG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N I+ R Y F GLDL W + + + DK
Sbjct: 78 WNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTT 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L ++ A EA+ S + +L+L+A V A Y VD I Q L++V++M +
Sbjct: 137 LVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 PTWTNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W TG ++ LY S N + + +W+++G A KL+L +P YG ++TL
Sbjct: 196 -SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLAS 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEI---KNHIKNYGPNVRVMYNSTYVVNYCSI 319
D +GA AT GP + G++ Y E+ K K + +V Y + N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G VW + D +
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 158/338 (46%), Gaps = 31/338 (9%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D++ +L THL+ FA + T ++LS + ++E + +K NP + TLL+IGG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N I+ R Y F GLDL W + + + DK
Sbjct: 78 WNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTT 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L ++ A EA+ S + +L+L+A V A Y VD I Q L++V++M +
Sbjct: 137 LVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 PTWTNFTGAHAALYDPNSVS------NTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W TG ++ LY S N + + +W+++G A KL+L +P YG ++TL
Sbjct: 196 -SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLAS 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEI---KNHIKNYGPNVRVMYNSTYVVNYCSI 319
D +GA AT GP + G++ Y E+ K K + +V Y + N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G VW + D +
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 167/339 (49%), Gaps = 32/339 (9%)
Query: 35 GDG--FPISDVNFALFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSI 89
GDG FP + F L TH++ FA++++ T+E ++ +T+K +NP++
Sbjct: 16 GDGSCFPDALDRF-LCTHIIYSFANISNDHIDTWEW-----NDVTLYGMLNTLKNRNPNL 69
Query: 90 TTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKY 149
TLLS+GG N + R +GF GLDL+W RDK
Sbjct: 70 KTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVP-PFLRTHGFDGLDLAWLYPG-RRDKQ 127
Query: 150 NIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTT 209
+ L KE +A EA+ + QL+L+A ++ ++ ++Y + I Q+L+++ +MT
Sbjct: 128 HFTTLIKEMKAEFIKEAQ--PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTY 185
Query: 210 GYSKPTWTNFTGAHAALY------DPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAW 263
+ W TG H+ L+ P+ SNT+Y + + G A KLV+ +P +G ++
Sbjct: 186 DFHG-AWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSF 244
Query: 264 TLVKPEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCS 318
TL E G+GA +GP + + G + Y EI + ++ G V + V Y +
Sbjct: 245 TLASSE-TGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRILGQQ--VPYAT 299
Query: 319 IGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
G W G+DD E+V+ KV Y K+++L G VW + D +
Sbjct: 300 KGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDF 338
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 23/335 (6%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D+N L THL+ FA + + E++ ++ + +K KN + TLL+IGG
Sbjct: 20 FMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGG 77
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N IK R Y F GLD W + + +DK+ +
Sbjct: 78 WNF-GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 136
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L +E R A + EA+ ++ +L++TA VA + + Y + + QYL+++HVMT
Sbjct: 137 LVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 195
Query: 214 PTWTNFTGAHAALYD------PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W +TG ++ LY N+ N +Y + W + G A+KL++ P YG + L
Sbjct: 196 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 254
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y EI +KN +++ V Y G +
Sbjct: 255 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 311
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W G+D+V++ +K + K K G VW + D +
Sbjct: 312 WVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 23/335 (6%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F D+N L THL+ FA + + E++ ++ + +K KN + TLL+IGG
Sbjct: 24 FMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGG 81
Query: 98 GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDKYNIGI 153
N IK R Y F GLD W + + +DK+ +
Sbjct: 82 WNF-GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 140
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L +E R A + EA+ ++ +L++TA VA + + Y + + QYL+++HVMT
Sbjct: 141 LVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 199
Query: 214 PTWTNFTGAHAALYD------PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
+W +TG ++ LY N+ N +Y + W + G A+KL++ P YG + L
Sbjct: 200 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 258
Query: 268 PEDNGIGAAAT-----GPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y EI +KN +++ V Y G +
Sbjct: 259 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 315
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W G+D++++ +K + K K G VW + D +
Sbjct: 316 WVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDF 350
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPERFSKIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 ALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ +G GA +GP + + G++ Y EI + + +G + V Y + G
Sbjct: 248 SKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPERFSAIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 ALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ +G GA +GP + + G++ Y EI + + +G + V Y + G
Sbjct: 248 SKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPERFSKIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + +L+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 ALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ + +GA +GP + + G++ Y EI + + +G + V Y + G
Sbjct: 248 SKTD-VGAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 160/335 (47%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYTFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPERFSKIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 TLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ + +GA +GP + + G++ Y EI + + +G + V Y + G
Sbjct: 248 SKTD-VGAPVSGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 160/335 (47%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP + TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPERFSAIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 TLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ + +GA +GP + + G++ Y EI + + +G + V Y + G
Sbjct: 248 SKTD-VGAPVSGPGVPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 25/335 (7%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLL 73
Query: 94 SIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIG 152
S+GG N P R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGPQRFSKIASKTQSRRTFIKSVP--PFLRTHGFDGLDLAWLYPG-RRDKRHLT 130
Query: 153 ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYS 212
L KE +A EA+ + QL+L+A V+ ++ Y + I ++L+++ ++T +
Sbjct: 131 TLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFH 188
Query: 213 KPTWTNFTGAHAALY----DPNS-VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267
W G H+ L+ D +S SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 189 G-AWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLAS 247
Query: 268 PEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322
+ + +GA +GP + + G++ Y EI + ++ G + V Y + G
Sbjct: 248 SKTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ--GATTHRFRDQQ--VPYATKGNQ 302
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
W +DD E+V+ K Y K ++L G VW + D +
Sbjct: 303 WVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 159/334 (47%), Gaps = 23/334 (6%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLL 73
Query: 94 SIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIGI 153
S+GG N + R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L KE +A EA+ + QL+L+A V ++ Y + I ++L+++ ++T +
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKP 268
W G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 190 -GWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIW 323
+GA +GP + + G++ Y EI + + +G + V Y + G W
Sbjct: 249 STR-VGAPISGPGIPGQFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
+DD E+V+ K Y K ++L G VW + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 160/334 (47%), Gaps = 23/334 (6%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLL 73
Query: 94 SIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIGI 153
S+GG N + R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L KE +A EA+ + QL+L+A V ++ Y + I ++L+++ ++T +
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKP 268
W G H+ L+ NS SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 190 -GWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + + G + Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
+DD E+V+ K Y K ++L G VW + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 159/334 (47%), Gaps = 23/334 (6%)
Query: 35 GDGFPISD-VNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLL 93
GDG D ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLL
Sbjct: 16 GDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLL 73
Query: 94 SIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNIGI 153
S+GG N + R +GF GLDL+W RDK ++
Sbjct: 74 SVGGWNYGSQRFSKIASKTQSRRTFIKSVP-PFLRTHGFDGLDLAWLWPGW-RDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSK 213
L KE +A EA+ + QL+L+A V ++ Y + I ++L+++ ++T +
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PTWTNFTGAHAALYDPNS-----VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKP 268
W G H+ L+ N SN +Y ++ + G A+KLV+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPALYD-----DGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPISGPGIPGRFTKWKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
+DD E+V+ K Y K ++L G VW + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 149/340 (43%), Gaps = 33/340 (9%)
Query: 38 FPISDVNFALFTHLMCGFADV--NSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSI 95
F +++ L THL+ FA + N TY D E + D KN + TLL+I
Sbjct: 20 FKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNGLKD----KNTELKTLLAI 75
Query: 96 GG---GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW----NSANTSRDK 148
GG G P I+ R Y F GL+L W + + +DK
Sbjct: 76 GGWKFGPAP----FSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDK 131
Query: 149 YNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMT 208
+ +L KE R A + E+ +L+LT+ A + Y + + Q L+++ VMT
Sbjct: 132 HLFSVLVKEMRKAFEEESVEKDI-PRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMT 190
Query: 209 TGYSKPTWTNFTGAHAALY-DPNSVS-----NTEYGITEWIEEGLSADKLVLCLPFYGFA 262
P +TG ++ LY P + N + I+ W + G +++KL++ P YG
Sbjct: 191 YDLHDPK-DGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHT 249
Query: 263 WTLVKPEDNGIGAA--ATGP-ALYDD--GLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYC 317
+ L P GIGA +TGP Y D GL+ Y E+ + V +++ V Y
Sbjct: 250 FILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV---WDAPQEVPYA 306
Query: 318 SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
G W G+D+V + ++K + K+ L G VW + D +
Sbjct: 307 YQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 34/338 (10%)
Query: 38 FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGG 97
F +++ L +HL+ FA + + ++ + E +++K KNP + LLSIGG
Sbjct: 21 FTPENIDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGG 78
Query: 98 ------GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSRDKYNI 151
G +P I R + F GLD+SW + ++ +
Sbjct: 79 YLFGSKGFHP-------MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPD-QKENTHF 130
Query: 152 GILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGY 211
+L E A + S++ +L+LTA V+ +Y V+ + + L+++++++ +
Sbjct: 131 TVLIHELAEAFQKDF-TKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDF 189
Query: 212 SKPTWTN--FTGAHAALYD------PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAW 263
+W TG ++ L P+S N EY + WI +G+ ++K+V+ +P YG ++
Sbjct: 190 HG-SWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSF 248
Query: 264 TLVKPEDN----GIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSI 319
TL E G A GP G + Y EI +K ++ V Y
Sbjct: 249 TLASAETTVGAPASGPGAAGPITESSGFLAYYEICQFLK----GAKITRLQDQQVPYAVK 304
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357
G W G+DDV+++ KV + K L G +W + D +
Sbjct: 305 GNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 43/323 (13%)
Query: 77 NFTDTVKIKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLD 136
N + +K NP++ T++S+GG N + R Y F G+D
Sbjct: 111 NQLNKLKQTNPNLKTIISVGGWTWSN--RFSDVAATAATREVFANSAVDFLRKYNFDGVD 168
Query: 137 LSWN-------SANTSR--DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLS 187
L W N+ R DK N +L + R +D + + L + + + +
Sbjct: 169 LDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGAS---AT 225
Query: 188 TAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAAL-YDPNSVS---------NTEY 237
AA + I ++W+++MT ++ W + +A L YDP + + N
Sbjct: 226 YAANTELAKIAAIVDWINIMTYDFNG-AWQKISAHNAPLNYDPAASAAGVPDANTFNVAA 284
Query: 238 GITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPA---LYDDGLVTYKEIK 294
G ++ G+ A KLVL +PFYG W NG TG + ++ G + +++
Sbjct: 285 GAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLE 344
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEV 352
+ N R +N T V Y + K + +DD E+V K +Y K K L G WE+
Sbjct: 345 ANYINKNGYTR-YWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWEL 403
Query: 353 SYDHYWMLSRAAAEEDNKNRQNK 375
S D NK QNK
Sbjct: 404 SGDR------------NKTLQNK 414
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 147/342 (42%), Gaps = 43/342 (12%)
Query: 42 DVNFALFTHLMCGFADVNSTTYELSLSPS--DEEQF---SNFTDT-------------VK 83
D+ TH++ FA+V T E+ ++ S D E+ +++DT +K
Sbjct: 63 DLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLK 122
Query: 84 IKNPSITTLLSIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSA 142
+N ++ LLSIGG +PN+ +K+ + GF GLD+ W
Sbjct: 123 KQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTA---VKLLQDLGFDGLDIDWEYP 179
Query: 143 NTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLN 202
+ + +L KE R A+D + N+ +LT P + D + Q L+
Sbjct: 180 ENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKD-MDQQLD 238
Query: 203 WVHVMTTGYSKPTWTNFTGAHAALYDPNSVS-----NTEYGITEWIEEGLSADKLVLCLP 257
+ ++M Y+ ++++ +G A +Y+ S NT+ + + G+ A+K+VL +P
Sbjct: 239 FWNLMAYDYAG-SFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMP 297
Query: 258 FYGFAWTLV----KPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYV 313
YG ++ KP NG+G + +++G+ YK + G V+ +
Sbjct: 298 LYGRSFANTDGPGKPY-NGVGQGS-----WENGVWDYKALPQA----GATEHVLPDIMAS 347
Query: 314 VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+Y + K +D+ + +K Y K L G W+ S D
Sbjct: 348 YSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 43/342 (12%)
Query: 42 DVNFALFTHLMCGFADVNSTTYELSLSPS--DEEQF---SNFTDT-------------VK 83
D+ TH++ FA+V T E+ ++ S D E+ +++DT +K
Sbjct: 25 DLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLK 84
Query: 84 IKNPSITTLLSIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSA 142
+N ++ LLSIGG +PN+ +K+ + GF GLD+ W
Sbjct: 85 KQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTA---VKLLQDLGFDGLDIDWEYP 141
Query: 143 NTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLN 202
+ + +L +E R A+D + N+ +LT P + D + Q L+
Sbjct: 142 ENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKD-MDQQLD 200
Query: 203 WVHVMTTGYSKPTWTNFTGAHAALYDPNSVS-----NTEYGITEWIEEGLSADKLVLCLP 257
+ ++M Y+ ++++ +G A +Y+ S NT+ + + G+ A+K+VL +P
Sbjct: 201 FWNLMAYDYAG-SFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMP 259
Query: 258 FYGFAWTLV----KPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYV 313
YG ++ KP NG+G + +++G+ YK + G V+ +
Sbjct: 260 LYGRSFANTDGPGKPY-NGVGQGS-----WENGVWDYKALPQA----GATEHVLPDIMAS 309
Query: 314 VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+Y + K +D+ + +K Y K L G W+ S D
Sbjct: 310 YSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 147/347 (42%), Gaps = 40/347 (11%)
Query: 35 GDGFPISDVNFALFTHLMCGFADVNSTTYELSLS----------PSD--EEQFSNFTDTV 82
G G D+ FTH++ FA++ + E+ LS P D +E +N +
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 83 KI------KNPSITTLLSIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGL 135
K N ++ TLLSIGG +PN+ +K+ + GF G+
Sbjct: 75 KQMYLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTS---LKLMKDLGFDGI 131
Query: 136 DLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVD 195
D++W + + +L K R A+D + + + + +LT P +
Sbjct: 132 DINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLA 190
Query: 196 SIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----DPNSVS-NTEYGITEWIEEGLSAD 250
+ +YL++ ++M +S +W +G + ++ P S +++ + ++I+ G+ A+
Sbjct: 191 EMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPAN 249
Query: 251 KLVLCLPFYGFAWTLVKPEDNGIGAA--ATGPALYDDGLVTYKEIKNHIKNYGPNVRVMY 308
K+VL +P YG A+ +GIG + G +++G+ YK++ G V +
Sbjct: 250 KIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELE 301
Query: 309 NSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+ +Y + +D V+ K Y + + G WE S D
Sbjct: 302 DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 146/347 (42%), Gaps = 40/347 (11%)
Query: 35 GDGFPISDVNFALFTHLMCGFADVNSTTYELSLS----------PSD--EEQFSNFTDTV 82
G G D+ FTH++ FA++ + E+ LS P D +E +N +
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 83 KI------KNPSITTLLSIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGL 135
K N ++ TLLSIGG +PN+ +K+ + GF G+
Sbjct: 75 KQMYLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTS---LKLMKDLGFDGI 131
Query: 136 DLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVD 195
D+ W + + +L K R A+D + + + + +LT P +
Sbjct: 132 DIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLA 190
Query: 196 SIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----DPNSVS-NTEYGITEWIEEGLSAD 250
+ +YL++ ++M +S +W +G + ++ P S +++ + ++I+ G+ A+
Sbjct: 191 EMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPAN 249
Query: 251 KLVLCLPFYGFAWTLVKPEDNGIGAA--ATGPALYDDGLVTYKEIKNHIKNYGPNVRVMY 308
K+VL +P YG A+ +GIG + G +++G+ YK++ G V +
Sbjct: 250 KIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELE 301
Query: 309 NSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+ +Y + +D V+ K Y + + G WE S D
Sbjct: 302 DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 146/347 (42%), Gaps = 40/347 (11%)
Query: 35 GDGFPISDVNFALFTHLMCGFADVNSTTYELSLS----------PSD--EEQFSNFTDTV 82
G G D+ FTH++ FA++ + E+ LS P D +E +N +
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 83 KI------KNPSITTLLSIGGGN-NPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGL 135
K N ++ TLLSIGG +PN+ +K+ + GF G+
Sbjct: 75 KQMYLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTS---LKLMKDLGFDGI 131
Query: 136 DLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVD 195
D+ W + + +L K R A+D + + + + +LT P +
Sbjct: 132 DIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLA 190
Query: 196 SIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----DPNSVS-NTEYGITEWIEEGLSAD 250
+ +YL++ ++M +S +W +G + ++ P S +++ + ++I+ G+ A+
Sbjct: 191 EMDKYLDFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPAN 249
Query: 251 KLVLCLPFYGFAWTLVKPEDNGIGAA--ATGPALYDDGLVTYKEIKNHIKNYGPNVRVMY 308
K+VL +P YG A+ +GIG + G +++G+ YK++ G V +
Sbjct: 250 KIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELE 301
Query: 309 NSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+ +Y + +D V+ K Y + + G WE S D
Sbjct: 302 DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 118/285 (41%), Gaps = 27/285 (9%)
Query: 82 VKIKNPSITTLLSIGG----GNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDL 137
+K N S+ +LSIGG N P ++ + +GF G+D+
Sbjct: 98 LKKANRSLKIMLSIGGWTWSTNFP------AAASTEATRATFAKTAVEFMKDWGFDGIDV 151
Query: 138 SWNSANTSRDKYNIGILFKEWRAAVDLEARN--NSSQSQLILTAKVAHSPLSTAAAYPVD 195
W + D N+ +L + R +D + N QL + A S + +
Sbjct: 152 DWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQLG 211
Query: 196 SIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----DPNSVS-NTEYGITEWIEEGLSAD 250
S+ L+ +++M Y+ +W + +G LY +P+S +T+ + +I G+ A
Sbjct: 212 SV---LDNINLMAYDYAG-SWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPAS 267
Query: 251 KLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNS 310
K++L +P YG A V + G + G ++ G+ YK + G V +
Sbjct: 268 KIILGMPIYGRA--FVGTDGPGKPYSTIGEGSWESGIWDYKVLPKA----GATVITDSAA 321
Query: 311 TYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355
+Y S + +D + VR KVSYAK L G WE S D
Sbjct: 322 GATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 157/382 (41%), Gaps = 67/382 (17%)
Query: 39 PISDVNFALFTHLMCGFADV---NSTTYELSLSPSD-EEQFSNFTDTVKIKNPSITTLLS 94
P ++ +HL+ G+A + N Y ++ + + QFS T ++K K P + LLS
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVT-SLKRKYPHLKVLLS 82
Query: 95 IGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIA----RLYGFQGLDLSWN-SANTSRDKY 149
+GG ++ + I+ A + YGF GLDL++ N R +
Sbjct: 83 VGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVH 142
Query: 150 -NIGI--------------------LFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLST 188
++G+ L KE A+ + +++ +L+ V + +++
Sbjct: 143 GDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPN-VNS 201
Query: 189 AAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAA-LYDPNSVS------NTEYGITE 241
+ + ++ +++V++ T + P ++A +Y P+ N ++ +
Sbjct: 202 TWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEY 261
Query: 242 WIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI----------GAAATGPALYDDGLVTYK 291
W+ +G ++K+ L + YG AW L K D+G+ G A G GL++Y
Sbjct: 262 WLSQGFPSNKINLGVATYGNAWKLTK--DSGLEGVPVVPETSGPAPEGFQSQKPGLLSYA 319
Query: 292 EIKNHIKN----------------YGPNVRVMYNSTYVVNYCSIGKIWFGFDDVEAVRVK 335
EI + N P R + V+ IW +DD ++ K
Sbjct: 320 EICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNK 379
Query: 336 VSYAKEKKLRGYYVWEVSYDHY 357
+YA+ K L G ++++SYD +
Sbjct: 380 AAYARVKNLGGVALFDLSYDDF 401
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 307 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG 366
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 367 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 423
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 424 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 483
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 484 SQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 540
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 541 IDADNGDILNSMNASLGN 558
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 SQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 SQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 GQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 22/256 (8%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPV--DSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGIT 240
+ A Y V +S+ + + + T +A + P++ T G+
Sbjct: 344 KDKIDKVA-YNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 241 EWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIKNH 296
+ +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 403 ALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQ 462
Query: 297 IKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVS 353
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE+
Sbjct: 463 FMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEID 519
Query: 354 YDHYWMLSRAAAEEDN 369
D+ +L+ A N
Sbjct: 520 ADNGDILNSMNASLGN 535
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D++W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 GQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 GQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 GQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W N+G +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 GQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 148/410 (36%), Gaps = 84/410 (20%)
Query: 23 AQTLIKVGYWD------SGDGFPISDVNFALFTHLMCGFA----DVNSTT---------- 62
AQ L VGY++ +G G I ++ THL F D T
Sbjct: 23 AQPLXSVGYFNGGGDVTAGPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHL 82
Query: 63 YELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXX 122
+E+ LSP + ++ +NP + LLS+GG +
Sbjct: 83 HEIWLSPKVQADLQKLP-ALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQ- 140
Query: 123 XIKIARLYGFQGLDLSWN---------SANTSRDKYNIGILFKEWRAAVDLEARNNSSQS 173
KI + YG G+DL W A+ D+ N L K R AV
Sbjct: 141 --KIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVG---------E 189
Query: 174 QLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYD----P 229
Q ++T V + S + V ++ LN++++ T Y T + ++ LYD P
Sbjct: 190 QKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXT--YDXAYGTQYFNSN--LYDSSHWP 245
Query: 230 NSVSNTEYG----ITEWIEEGLSADKLVLCLPFYG----------FAWTLVKPEDNGIGA 275
+ +Y + ++ GL + L + FYG WT ++N +
Sbjct: 246 TVAAADKYSADFVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQ 305
Query: 276 AATGPA-----------LYDDGLVTYKEIKNHIKNYGPNVRVM--YNSTYVVNYCSI--- 319
GP L D V Y +I + N P R ++ V + S+
Sbjct: 306 PYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLN-DPQKRFTEHWDDEAKVPWLSVQSA 364
Query: 320 -GKIWFG--FDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
GK F +++ +V +K Y K K L G WE D L+R AE
Sbjct: 365 EGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADDQNQLARQLAE 414
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 26/258 (10%)
Query: 132 FQGLDLSW-----NSAN----TSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVA 182
F G+D+ W AN + +D +L KE RA +D + + +L
Sbjct: 284 FDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG 343
Query: 183 HSPLSTAAAYPVDSIRQYLNWVHVMT----TGYSKPTWTNFTGAHAALYDPNSVSNTEYG 238
+ A Y V + ++ + +M+ + + T +A + P++ T G
Sbjct: 344 KDKIDKVA-YNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG 400
Query: 239 ITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGI--GAAATGP--ALYDDGLVTYKEIK 294
+ + +G+ K+V+ YG WT V N I ATGP +++G+V Y++I
Sbjct: 401 VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIA 460
Query: 295 NHIKNYGPNVRVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWE 351
+ + + Y++T Y S G + FDD +V+ K Y +K+L G + WE
Sbjct: 461 SQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 352 VSYDHYWMLSRAAAEEDN 369
+ D+ +L+ A N
Sbjct: 518 IDADNGDILNSMNASLGN 535
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 149/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D++W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 128/326 (39%), Gaps = 59/326 (18%)
Query: 82 VKIKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWN- 140
+K +NP + + SIGGG + +K + Y G+D+ W
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFY--DGVDIDWEF 295
Query: 141 -----SANTSRDKYNIG----ILFKEWRAAVD-LEARNNSSQSQLILTAKVAHSPLSTAA 190
+A D N G L +E R +D LEA + +L V + +
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTY-ELTSAIGVGYDKIEDVD 354
Query: 191 AYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----------DPNSVSN------ 234
D++ QY++++ MT + W N G ALY D V
Sbjct: 355 Y--ADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 235 -----TEYGITEWIEEGLSADKLVLCLPFYGFAW------TLVKPEDNGIGAA------A 277
+ GI + +G+ A+KLVL YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 278 TGPALYDDGLVTYKEIKNHI---KNYGPN-VRVMYNSTYVVNYC---SIGKIWFGFDDVE 330
T +++DG++ YK IK+ + N G N Y++ + S G++ FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL-ITFDDHR 529
Query: 331 AVRVKVSYAKEKKLRGYYVWEVSYDH 356
+V K +YAK L G + WE+ D+
Sbjct: 530 SVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 149/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D++W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 89
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D+ W +
Sbjct: 90 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 149
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 150 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 207
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 208 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 266
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 267 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 326
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 327 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 384
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 385 KYKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+D+ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/384 (19%), Positives = 148/384 (38%), Gaps = 70/384 (18%)
Query: 38 FPISDVNFA---LFTHLMCGFADVNST---TYELSLSPSDEEQFSNFTDTVKIKNPSITT 91
FP+S++ A TH+ F D+NS ++ + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWNSANTSR 146
+ SIGG N + ++I + YGF G+++ W +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSQS---QLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203
I L +E R ++ + + Q+ QL + LS + + I L++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS-KLAQIVAPLDY 208
Query: 204 VHVMTTGYSKPTWTNFTGAHAALY-----------------------------DPNSVSN 234
+++MT + P W T AAL+ P S++
Sbjct: 209 INLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTV 267
Query: 235 TEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL------------ 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 DAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG 327
Query: 283 -------YDDGLVTYKEIKNHIK-NYGPNVRVMYNSTYVVNYC--SIGKIWFGFDDVEAV 332
D + +Y++++ ++ NYG + ++N Y + ++ +DD E+
Sbjct: 328 CEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESF 385
Query: 333 RVKVSYAKEKKLRGYYVWEVSYDH 356
+ K Y K+++L G W + D+
Sbjct: 386 KYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 123/325 (37%), Gaps = 57/325 (17%)
Query: 82 VKIKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSWN- 140
+K +NP + + SIGG + +K + Y G+D+ W
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFY--DGVDIDWEF 295
Query: 141 -----SANTSRDKYNIG----ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191
+A D N G L +E R +D +L V + +
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY 355
Query: 192 YPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----------DPNSVSN------- 234
D++ QY++++ MT + W N G ALY D V
Sbjct: 356 --ADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKG 411
Query: 235 ----TEYGITEWIEEGLSADKLVLCLPFYGFAW------TLVKPEDNGIGAA------AT 278
+ GI + +G+ A+KLVL YG W TL P D G A +T
Sbjct: 412 PAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGST 471
Query: 279 GPALYDDGLVTYKEIKNHI---KNYGPN-VRVMYNSTYVVNYC---SIGKIWFGFDDVEA 331
+++DG++ YK IK+ + N G N Y++ + S G++ FDD +
Sbjct: 472 AQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL-ITFDDHRS 530
Query: 332 VRVKVSYAKEKKLRGYYVWEVSYDH 356
V K +YAK L G + WE+ D+
Sbjct: 531 VLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 123/325 (37%), Gaps = 57/325 (17%)
Query: 82 VKIKNPSITTLLSIGGGNNPNYXXXXXXXXXXXXXXXXXXXXIKIARLYGFQGLDLSW-- 139
+K +NP + + SIGG + +K + Y G+D+ W
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFY--DGVDIDWMF 295
Query: 140 ----NSANTSRDKYNIG----ILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191
+A D N G L +E R +D +L V + +
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY 355
Query: 192 YPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY----------DPNSVSN------- 234
D++ QY++++ MT + W N G ALY D V
Sbjct: 356 --ADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKG 411
Query: 235 ----TEYGITEWIEEGLSADKLVLCLPFYGFAW------TLVKPEDNGIGAA------AT 278
+ GI + +G+ A+KLVL YG W TL P D G A +T
Sbjct: 412 PAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGST 471
Query: 279 GPALYDDGLVTYKEIKNHI---KNYGPN-VRVMYNSTYVVNYC---SIGKIWFGFDDVEA 331
+++DG++ YK IK+ + N G N Y++ + S G++ FDD +
Sbjct: 472 AQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL-ITFDDHRS 530
Query: 332 VRVKVSYAKEKKLRGYYVWEVSYDH 356
V K +YAK L G + WE+ D+
Sbjct: 531 VLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 34/258 (13%)
Query: 132 FQGLDLSW-----------NSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAK 180
F G+D+ W N +T D+ N L E+R +D A +++ + +L+A
Sbjct: 175 FDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLD--AYGSTNNKKYVLSAF 232
Query: 181 VAHSPLSTAAAYPVDSIR-QYLNWVHVMT---TGYSKPTWTNFTGAHAALYD-------P 229
+ +P A D + L++ + G PT TG A LYD P
Sbjct: 233 LPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPT---LTGHQANLYDDPADPRAP 289
Query: 230 NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVT 289
+ + + + +++ G+ +L L L YG WT K A P Y+
Sbjct: 290 SKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPWGPATDGAPGTYETANED 349
Query: 290 YKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYV 349
Y ++K ++ Y++ + G W+ +D++ + K Y K L G
Sbjct: 350 YDKLKTLGTDH-------YDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMW 402
Query: 350 WEVSYDHYWMLSRAAAEE 367
WE+S D L A +++
Sbjct: 403 WELSGDRNGELVGAMSDK 420
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 433 LREYSLADIEAATDRLSIENKLGEGGYGPVYK 464
L+ +SL +++ A+D S +N LG GG+G VYK
Sbjct: 25 LKRFSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 433 LREYSLADIEAATDRLSIENKLGEGGYGPVYK 464
L+ +SL +++ A+D +N LG GG+G VYK
Sbjct: 17 LKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 99/272 (36%), Gaps = 44/272 (16%)
Query: 128 RLYGFQGLDLSW-------NSANTSRDK--YNIGILFKEWRAAVD----LEARNNSSQSQ 174
R F +D+ W + N S DK N +L KE R+A+D R S +
Sbjct: 250 RFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISIAC 309
Query: 175 LILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSN 234
+ A + S + A +D+I ++M+ + W ++ G H LY P
Sbjct: 310 SGVXAXLKKSNIDQLVANGLDNI-------YLMSYDFFGTIWADYIGHHTNLYSPKDPGE 362
Query: 235 TEY------GITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL--YDDG 286
E +++ L + L + + + V + GPAL ++G
Sbjct: 363 QELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 287 LVTYKEIKNHIKNY---------GPNVRVMYNSTYVVN---YCSIGKIWFGFDDVEAVRV 334
+ +I +KNY G N V+ T + + D V+
Sbjct: 423 APEFFDI---VKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQ 479
Query: 335 KVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
K YA + KL G + W D +L+ AA E
Sbjct: 480 KGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 316 YCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAEEDNKNRQNK 375
Y K++ D +VR K Y K+K L G ++W D+ +L+ AA E + +NK
Sbjct: 456 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAAHEGLKRRIKNK 514
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 316 YCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAEEDNKNRQNK 375
Y K++ D +VR K Y K+K L G ++W D+ +L+ AA E + +NK
Sbjct: 484 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAAHEGLKRRIKNK 542
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 95/269 (35%), Gaps = 38/269 (14%)
Query: 128 RLYGFQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVD----LEARNNSSQSQ 174
R F +D+ W D+ NI +L KE R+A+D R S +
Sbjct: 250 RFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIAC 309
Query: 175 LILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSN 234
+ A + S + A +D+I ++M+ + W ++ G H LY P
Sbjct: 310 SGVXAXLKKSNIDQLVANGLDNI-------YLMSYDFFGTIWADYIGHHTNLYSPKDPGE 362
Query: 235 TEY------GITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL--YDDG 286
E +++ L + L + + + V + GPAL ++G
Sbjct: 363 QELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 287 LVTYKEI------KNHIKNYGPNVRVMYNSTYVVN---YCSIGKIWFGFDDVEAVRVKVS 337
+ +I H + G N V+ T + + D V+ K
Sbjct: 423 APEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGE 482
Query: 338 YAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
YA + KL G + W D +L+ AA E
Sbjct: 483 YAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 99/270 (36%), Gaps = 40/270 (14%)
Query: 128 RLYGFQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVD----LEARNNSSQSQ 174
R F +D+ W D+ NI +L KE R+A+D R S +
Sbjct: 250 RFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIAC 309
Query: 175 LILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSN 234
+ A + S + A +D+I ++M+ + W ++ G H LY P
Sbjct: 310 SGVXAXLKXSNIDQLVANGLDNI-------YLMSYDFFGTIWADYIGHHTNLYSPKDPGE 362
Query: 235 TEY------GITEWI--EEGLSADKLVLCLPFYGFA-----WTLVKPEDNG--IGAAATG 279
E +++ E G+ +K+ L YG + T + NG +G G
Sbjct: 363 QELFDLSAEAAIDYLHNELGIPMEKIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 280 PALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVN---YCSIGKIWFGFDDVEAVRVKV 336
+ D + Y + + H + G N V+ T + + D V K
Sbjct: 423 APEFFDIVXNYMDAE-HSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKG 481
Query: 337 SYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
YA + KL G + W D +L+ AA E
Sbjct: 482 EYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 96/272 (35%), Gaps = 44/272 (16%)
Query: 128 RLYGFQGLDLSWNSANTSRDKYNIG---------ILFKEWRAAVD----LEARNNSSQSQ 174
R F +D+ W D+ NI +L E R+A+D R S +
Sbjct: 250 RFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIAC 309
Query: 175 LILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSN 234
+ A + S + A +D+I ++M+ + W ++ G H LY P
Sbjct: 310 SGVXAXLKXSNIDQLVANGLDNI-------YLMSYDFFGTIWADYIGHHTNLYSPKDPGE 362
Query: 235 TEY------GITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL--YDDG 286
E +++ L + L + + + V + GPAL ++G
Sbjct: 363 QELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 287 LVTYKEIKNHIKNY---------GPNVRVMYNSTYVVN---YCSIGKIWFGFDDVEAVRV 334
+ +I +KNY G N V+ T + + D V+
Sbjct: 423 APEFFDI---VKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQ 479
Query: 335 KVSYAKEKKLRGYYVWEVSYDHYWMLSRAAAE 366
K YA + KL G + W D +L+ AA E
Sbjct: 480 KGEYAAKNKLGGVFSWSGDQD-CGLLANAARE 510
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,930,744
Number of Sequences: 62578
Number of extensions: 562427
Number of successful extensions: 1561
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 73
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)