Query 012202
Match_columns 468
No_of_seqs 362 out of 2839
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 1.2E-61 2.5E-66 462.2 32.5 288 26-357 3-295 (299)
2 cd02872 GH18_chitolectin_chito 100.0 9.4E-61 2E-65 471.6 33.8 322 28-361 1-347 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 2.5E-58 5.5E-63 456.8 34.0 325 27-361 1-398 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 1.2E-57 2.5E-62 445.5 32.9 316 27-355 1-334 (334)
5 KOG2806 Chitinase [Carbohydrat 100.0 2.7E-57 5.8E-62 450.4 33.6 333 22-360 54-402 (432)
6 COG3325 ChiA Chitinase [Carboh 100.0 6.5E-58 1.4E-62 429.2 26.4 328 21-357 33-425 (441)
7 cd02878 GH18_zymocin_alpha Zym 100.0 3.1E-57 6.8E-62 440.4 30.2 308 27-355 1-345 (345)
8 cd06548 GH18_chitinase The GH1 100.0 1E-56 2.2E-61 434.4 30.9 283 28-355 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 4.4E-52 9.5E-57 408.8 30.6 321 26-355 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 5.6E-52 1.2E-56 400.9 25.1 290 27-356 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.3E-49 2.8E-54 387.4 31.4 295 25-362 35-346 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 6.6E-48 1.4E-52 372.4 25.7 290 27-356 3-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 2.3E-44 4.9E-49 343.5 24.0 286 28-356 2-294 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 8E-44 1.7E-48 332.8 25.5 240 28-356 1-243 (253)
15 cd00598 GH18_chitinase-like Th 100.0 8.7E-34 1.9E-38 258.9 21.4 172 28-210 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 5.8E-33 1.3E-37 260.6 21.1 238 88-357 160-412 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 5.7E-30 1.2E-34 237.7 20.7 196 27-258 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 2.4E-30 5.1E-35 238.4 17.9 204 36-263 11-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 9.1E-28 2E-32 230.6 21.0 211 26-259 1-248 (312)
20 KOG2091 Predicted member of gl 99.9 3.9E-26 8.5E-31 204.6 17.2 292 26-355 79-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 1.1E-22 2.3E-27 190.9 15.2 196 26-261 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 2.6E-20 5.7E-25 174.2 18.1 199 28-259 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.8 3.4E-19 7.3E-24 168.0 13.8 150 45-214 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.7 2.4E-17 5.1E-22 144.0 13.6 219 20-258 20-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.3 3E-11 6.5E-16 112.0 15.3 220 7-259 8-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.6 3.8E-07 8.3E-12 88.1 12.7 157 78-264 51-216 (339)
27 KOG1187 Serine/threonine prote 98.2 9.1E-07 2E-11 86.9 2.9 37 432-468 61-97 (361)
28 PF03644 Glyco_hydro_85: Glyco 98.1 8.4E-06 1.8E-10 77.9 7.8 155 78-262 47-209 (311)
29 PF02638 DUF187: Glycosyl hydr 98.1 3.6E-05 7.7E-10 74.0 11.7 129 112-261 135-299 (311)
30 PF11340 DUF3142: Protein of u 97.6 0.00071 1.5E-08 58.2 10.3 114 113-260 23-138 (181)
31 PF13200 DUF4015: Putative gly 97.3 0.028 6E-07 53.7 18.5 101 117-227 123-242 (316)
32 PLN00113 leucine-rich repeat r 96.9 0.0021 4.5E-08 72.4 7.6 30 435-467 682-711 (968)
33 KOG2331 Predicted glycosylhydr 96.4 0.11 2.4E-06 50.4 13.9 83 81-166 119-202 (526)
34 KOG3653 Transforming growth fa 96.3 0.0098 2.1E-07 58.5 6.7 18 451-468 215-232 (534)
35 PF14883 GHL13: Hypothetical g 94.5 1.9 4.2E-05 40.3 14.6 195 47-264 30-266 (294)
36 KOG1025 Epidermal growth facto 94.1 0.019 4E-07 60.4 0.9 17 450-466 700-716 (1177)
37 TIGR01370 cysRS possible cyste 92.2 0.91 2E-05 43.5 9.0 56 112-168 142-206 (315)
38 PF04478 Mid2: Mid2 like cell 90.5 0.079 1.7E-06 44.1 0.0 31 375-405 48-78 (154)
39 PLN03224 probable serine/threo 90.1 0.11 2.5E-06 53.4 0.7 24 444-467 143-166 (507)
40 COG1649 Uncharacterized protei 89.9 0.77 1.7E-05 45.5 6.3 127 113-261 181-344 (418)
41 cd02810 DHOD_DHPD_FMN Dihydroo 88.9 4 8.6E-05 38.9 10.4 74 72-162 82-161 (289)
42 KOG0196 Tyrosine kinase, EPH ( 88.8 0.16 3.5E-06 53.4 0.8 34 435-468 609-651 (996)
43 COG1306 Uncharacterized conser 87.2 2 4.4E-05 40.0 6.7 84 118-212 196-299 (400)
44 PF01102 Glycophorin_A: Glycop 86.8 0.57 1.2E-05 37.9 2.6 27 377-403 65-91 (122)
45 TIGR02103 pullul_strch alpha-1 86.7 5.8 0.00013 43.8 11.0 85 73-167 404-518 (898)
46 TIGR02104 pulA_typeI pullulana 85.8 7.5 0.00016 41.3 11.2 86 73-167 229-341 (605)
47 cd02930 DCR_FMN 2,4-dienoyl-Co 84.9 20 0.00043 35.3 13.0 89 48-139 47-158 (353)
48 TIGR02402 trehalose_TreZ malto 84.7 6.8 0.00015 41.0 10.1 91 71-166 158-269 (542)
49 PRK12313 glycogen branching en 84.5 11 0.00023 40.5 11.7 95 71-168 218-355 (633)
50 PF14871 GHL6: Hypothetical gl 84.2 5.2 0.00011 33.1 7.2 66 72-139 43-132 (132)
51 PF15102 TMEM154: TMEM154 prot 83.9 1.4 3.1E-05 36.6 3.7 9 434-442 123-131 (146)
52 PRK12568 glycogen branching en 83.6 14 0.0003 39.9 11.8 96 71-168 317-455 (730)
53 TIGR01515 branching_enzym alph 83.2 15 0.00033 39.1 12.1 96 71-168 204-342 (613)
54 KOG0193 Serine/threonine prote 82.4 0.64 1.4E-05 47.7 1.3 25 436-467 389-413 (678)
55 PLN03225 Serine/threonine-prot 82.3 0.45 9.7E-06 50.1 0.2 24 444-467 130-153 (566)
56 cd04734 OYE_like_3_FMN Old yel 82.2 31 0.00068 33.7 13.1 89 48-140 47-163 (343)
57 PLN02960 alpha-amylase 82.0 15 0.00033 40.2 11.3 95 71-168 464-604 (897)
58 PRK14581 hmsF outer membrane N 81.3 36 0.00078 36.5 13.7 197 47-264 347-614 (672)
59 PRK05402 glycogen branching en 81.2 16 0.00035 39.8 11.6 96 71-168 313-451 (726)
60 PF02439 Adeno_E3_CR2: Adenovi 80.5 1.9 4.2E-05 26.7 2.4 25 380-404 7-32 (38)
61 PF07476 MAAL_C: Methylasparta 75.6 17 0.00037 32.7 7.8 102 112-247 87-190 (248)
62 PTZ00382 Variant-specific surf 75.5 1.6 3.4E-05 33.9 1.3 24 376-399 66-89 (96)
63 PF13199 Glyco_hydro_66: Glyco 75.5 5.9 0.00013 41.3 5.8 56 110-165 237-302 (559)
64 PF14587 Glyco_hydr_30_2: O-Gl 75.4 19 0.00042 35.4 9.0 93 72-168 103-219 (384)
65 cd04747 OYE_like_5_FMN Old yel 75.3 11 0.00025 37.0 7.6 24 117-141 144-167 (361)
66 PRK10785 maltodextrin glucosid 75.1 29 0.00062 36.9 11.1 96 71-168 224-366 (598)
67 PF14575 EphA2_TM: Ephrin type 75.0 1.1 2.4E-05 33.0 0.4 16 435-450 56-71 (75)
68 PLN03244 alpha-amylase; Provis 73.9 42 0.00091 36.4 11.6 94 71-167 439-578 (872)
69 cd04733 OYE_like_2_FMN Old yel 73.8 10 0.00022 37.1 6.9 25 116-141 148-172 (338)
70 PRK14705 glycogen branching en 73.7 61 0.0013 37.4 13.5 95 71-167 813-950 (1224)
71 PRK14706 glycogen branching en 73.4 46 0.001 35.6 12.0 96 71-168 215-351 (639)
72 PF07745 Glyco_hydro_53: Glyco 72.3 17 0.00038 35.2 7.9 166 71-267 56-245 (332)
73 TIGR02102 pullulan_Gpos pullul 71.4 36 0.00077 38.8 11.0 85 73-166 555-663 (1111)
74 PF01034 Syndecan: Syndecan do 70.7 1.3 2.9E-05 31.0 -0.1 11 380-390 13-23 (64)
75 cd04740 DHOD_1B_like Dihydroor 70.4 37 0.00079 32.4 9.8 59 87-162 88-153 (296)
76 COG3867 Arabinogalactan endo-1 70.1 1E+02 0.0022 29.3 17.1 168 71-268 102-292 (403)
77 PLN02495 oxidoreductase, actin 70.1 53 0.0012 32.7 10.9 57 72-144 97-153 (385)
78 COG1891 Uncharacterized protei 70.0 38 0.00083 29.2 8.3 170 110-345 4-182 (235)
79 cd02931 ER_like_FMN Enoate red 70.0 19 0.00042 35.8 7.9 22 72-95 82-103 (382)
80 cd02932 OYE_YqiM_FMN Old yello 69.4 10 0.00022 37.0 5.8 47 47-95 46-97 (336)
81 cd02803 OYE_like_FMN_family Ol 68.8 25 0.00053 34.1 8.4 46 48-95 47-97 (327)
82 TIGR00737 nifR3_yhdG putative 68.6 34 0.00073 33.1 9.2 42 85-143 59-100 (319)
83 PF05454 DAG1: Dystroglycan (D 67.2 1.8 3.9E-05 40.8 0.0 17 149-165 19-35 (290)
84 PLN02447 1,4-alpha-glucan-bran 67.0 57 0.0012 35.5 11.0 95 71-168 298-439 (758)
85 PTZ00284 protein kinase; Provi 67.0 1.2 2.6E-05 45.7 -1.3 29 439-467 122-150 (467)
86 KOG1024 Receptor-like protein 66.8 12 0.00026 36.8 5.3 20 448-467 286-305 (563)
87 PRK10550 tRNA-dihydrouridine s 66.2 24 0.00052 34.0 7.5 59 88-163 62-131 (312)
88 COG1902 NemA NADH:flavin oxido 65.8 82 0.0018 31.1 11.2 23 72-96 82-104 (363)
89 KOG1026 Nerve growth factor re 65.6 5.6 0.00012 42.5 3.2 17 451-467 491-507 (774)
90 PF07172 GRP: Glycine rich pro 65.4 2.6 5.7E-05 32.6 0.6 12 1-12 1-12 (95)
91 PRK07259 dihydroorotate dehydr 65.2 48 0.001 31.7 9.4 58 88-162 91-156 (301)
92 cd04735 OYE_like_4_FMN Old yel 65.0 38 0.00081 33.3 8.8 133 69-211 74-259 (353)
93 cd02929 TMADH_HD_FMN Trimethyl 64.5 25 0.00053 34.9 7.4 91 48-141 52-173 (370)
94 cd02940 DHPD_FMN Dihydropyrimi 64.5 84 0.0018 30.0 10.9 72 75-162 86-167 (299)
95 TIGR02100 glgX_debranch glycog 64.2 46 0.00099 36.0 9.8 87 72-160 244-365 (688)
96 PRK14582 pgaB outer membrane N 63.9 33 0.00071 36.8 8.5 134 112-264 439-614 (671)
97 PF12273 RCR: Chitin synthesis 63.7 5.9 0.00013 32.7 2.5 12 399-410 18-29 (130)
98 PF14885 GHL15: Hypothetical g 63.4 12 0.00026 27.8 3.8 34 106-139 41-75 (79)
99 PRK13523 NADPH dehydrogenase N 62.4 1.4E+02 0.0031 29.1 12.2 91 47-140 50-164 (337)
100 PRK08318 dihydropyrimidine deh 62.0 75 0.0016 32.1 10.6 67 80-162 91-167 (420)
101 KOG0663 Protein kinase PITSLRE 61.7 2.1 4.6E-05 40.9 -0.6 19 448-466 78-96 (419)
102 cd06591 GH31_xylosidase_XylS X 60.7 46 0.001 32.2 8.4 34 110-143 128-161 (319)
103 KOG0194 Protein tyrosine kinas 60.6 3.8 8.3E-05 41.6 0.9 17 451-467 162-178 (474)
104 PF08374 Protocadherin: Protoc 60.1 12 0.00025 33.4 3.7 19 374-392 36-54 (221)
105 PF15345 TMEM51: Transmembrane 59.0 18 0.0004 32.6 4.8 23 384-406 64-86 (233)
106 KOG1035 eIF-2alpha kinase GCN2 59.0 2.8 6.1E-05 46.7 -0.3 22 445-466 478-499 (1351)
107 PRK03995 hypothetical protein; 58.8 28 0.0006 32.6 6.2 69 87-158 179-260 (267)
108 KOG2052 Activin A type IB rece 58.4 7.2 0.00016 38.8 2.3 16 451-466 216-231 (513)
109 PF02057 Glyco_hydro_59: Glyco 58.3 25 0.00055 37.2 6.3 83 77-167 116-202 (669)
110 PLN02877 alpha-amylase/limit d 58.2 60 0.0013 36.3 9.4 30 113-142 534-563 (970)
111 PRK07565 dihydroorotate dehydr 58.1 76 0.0016 30.9 9.5 76 69-162 83-164 (334)
112 PRK02506 dihydroorotate dehydr 57.9 85 0.0018 30.2 9.6 79 67-162 71-156 (310)
113 TIGR01093 aroD 3-dehydroquinat 57.2 1.5E+02 0.0033 26.9 14.4 46 251-296 182-227 (228)
114 PF05393 Hum_adeno_E3A: Human 56.4 17 0.00037 27.2 3.4 15 391-405 45-59 (94)
115 cd06592 GH31_glucosidase_KIAA1 55.3 41 0.00089 32.2 7.0 33 110-142 134-166 (303)
116 cd05106 PTKc_CSF-1R Catalytic 55.0 5.1 0.00011 39.7 0.7 19 448-466 40-58 (374)
117 PF02065 Melibiase: Melibiase; 54.6 90 0.002 31.2 9.4 120 71-204 102-251 (394)
118 PTZ00036 glycogen synthase kin 54.5 4 8.6E-05 41.5 -0.1 23 445-467 65-87 (440)
119 cd02933 OYE_like_FMN Old yello 54.1 43 0.00093 32.7 7.0 43 51-95 50-97 (338)
120 PRK03705 glycogen debranching 54.0 54 0.0012 35.2 8.2 66 73-140 242-338 (658)
121 cd05622 STKc_ROCK1 Catalytic d 53.9 3.5 7.5E-05 40.8 -0.6 29 438-466 35-63 (371)
122 KOG1552 Predicted alpha/beta h 53.3 21 0.00045 33.0 4.3 51 203-262 88-138 (258)
123 PF08869 XisI: XisI protein; 53.3 8 0.00017 30.8 1.4 18 239-256 80-97 (111)
124 cd02801 DUS_like_FMN Dihydrour 53.0 42 0.00091 30.5 6.5 64 83-163 49-123 (231)
125 PRK13575 3-dehydroquinate dehy 52.2 1.9E+02 0.0042 26.6 14.6 56 73-141 47-107 (238)
126 PRK09605 bifunctional UGMP fam 52.0 5.2 0.00011 41.8 0.3 26 442-467 329-354 (535)
127 PF15050 SCIMP: SCIMP protein 52.0 12 0.00026 29.7 2.2 10 436-445 94-103 (133)
128 PRK10605 N-ethylmaleimide redu 52.0 81 0.0018 31.1 8.6 46 48-95 49-99 (362)
129 PF00834 Ribul_P_3_epim: Ribul 51.9 49 0.0011 29.6 6.5 65 124-210 73-137 (201)
130 PHA03265 envelope glycoprotein 51.5 11 0.00025 35.9 2.4 27 380-406 351-377 (402)
131 COG4724 Endo-beta-N-acetylgluc 51.4 35 0.00076 33.4 5.6 84 77-162 131-219 (553)
132 PRK09936 hypothetical protein; 51.4 2.2E+02 0.0048 27.0 12.0 107 46-163 50-170 (296)
133 PF07364 DUF1485: Protein of u 51.1 2E+02 0.0044 27.4 10.8 148 74-260 46-198 (292)
134 PF01299 Lamp: Lysosome-associ 51.1 5.3 0.00011 38.4 0.1 28 377-404 271-298 (306)
135 cd05621 STKc_ROCK2 Catalytic d 50.8 4.1 8.9E-05 40.3 -0.7 22 445-466 42-63 (370)
136 cd04738 DHOD_2_like Dihydrooro 50.8 1.2E+02 0.0027 29.3 9.6 66 87-163 127-197 (327)
137 PF12191 stn_TNFRSF12A: Tumour 50.4 5.7 0.00012 32.0 0.2 30 377-406 77-106 (129)
138 PRK11815 tRNA-dihydrouridine s 50.1 48 0.001 32.3 6.6 41 86-143 62-102 (333)
139 PRK01060 endonuclease IV; Prov 49.5 36 0.00078 32.0 5.6 47 120-166 14-60 (281)
140 COG1908 FrhD Coenzyme F420-red 49.5 33 0.00071 27.6 4.2 47 120-167 80-126 (132)
141 TIGR00742 yjbN tRNA dihydrouri 49.2 53 0.0012 31.8 6.7 60 86-162 52-122 (318)
142 PF00724 Oxidored_FMN: NADH:fl 48.6 1.3E+02 0.0029 29.3 9.5 48 47-96 49-101 (341)
143 KOG0600 Cdc2-related protein k 48.6 4.1 9E-05 41.1 -1.0 17 450-466 121-137 (560)
144 PRK14866 hypothetical protein; 48.1 50 0.0011 33.4 6.4 69 87-158 183-263 (451)
145 PLN02411 12-oxophytodienoate r 48.0 47 0.001 33.2 6.3 44 50-95 59-107 (391)
146 PHA03210 serine/threonine kina 47.7 7.9 0.00017 40.1 0.8 22 445-466 147-168 (501)
147 PF04914 DltD_C: DltD C-termin 47.5 67 0.0015 26.5 6.1 62 71-138 34-96 (130)
148 cd04741 DHOD_1A_like Dihydroor 46.7 1.6E+02 0.0035 28.0 9.6 77 69-162 70-156 (294)
149 cd06602 GH31_MGAM_SI_GAA This 46.0 1E+02 0.0022 30.1 8.2 34 110-143 134-167 (339)
150 KOG0192 Tyrosine kinase specif 45.4 8.5 0.00018 38.0 0.6 17 451-467 46-62 (362)
151 cd05596 STKc_ROCK Catalytic do 45.3 3.8 8.2E-05 40.5 -1.9 22 445-466 42-63 (370)
152 PF12768 Rax2: Cortical protei 45.2 32 0.00069 32.6 4.4 28 374-401 225-252 (281)
153 PRK02412 aroD 3-dehydroquinate 44.6 2.6E+02 0.0057 25.9 12.1 49 251-299 200-248 (253)
154 KOG4258 Insulin/growth factor 44.6 8 0.00017 41.5 0.3 18 449-466 997-1014(1025)
155 PHA03209 serine/threonine kina 43.6 10 0.00022 37.3 0.8 24 444-467 64-87 (357)
156 PLN00034 mitogen-activated pro 43.2 9.1 0.0002 37.4 0.4 17 451-467 79-95 (353)
157 cd00019 AP2Ec AP endonuclease 42.5 57 0.0012 30.7 5.8 46 120-165 12-57 (279)
158 PRK08255 salicylyl-CoA 5-hydro 41.8 86 0.0019 34.5 7.7 24 116-140 550-573 (765)
159 COG0296 GlgB 1,4-alpha-glucan 41.7 79 0.0017 33.6 6.9 95 71-167 212-349 (628)
160 PF12877 DUF3827: Domain of un 41.6 35 0.00075 35.7 4.2 8 175-182 77-84 (684)
161 PRK05286 dihydroorotate dehydr 41.5 2.4E+02 0.0051 27.6 10.0 75 78-163 127-206 (344)
162 PF07745 Glyco_hydro_53: Glyco 41.4 1.9E+02 0.0042 28.1 9.1 67 79-164 160-230 (332)
163 cd06600 GH31_MGAM-like This fa 41.4 1.3E+02 0.0027 29.1 8.0 34 110-143 129-162 (317)
164 TIGR03849 arch_ComA phosphosul 41.2 1.3E+02 0.0028 27.6 7.4 69 74-159 42-110 (237)
165 PF05763 DUF835: Protein of un 40.9 46 0.001 27.7 4.2 56 111-166 55-111 (136)
166 cd06599 GH31_glycosidase_Aec37 40.2 1.2E+02 0.0026 29.2 7.7 32 111-142 138-169 (317)
167 PF06365 CD34_antigen: CD34/Po 39.4 39 0.00085 30.1 3.7 8 291-298 23-30 (202)
168 PF01102 Glycophorin_A: Glycop 39.0 31 0.00066 28.1 2.7 35 376-410 60-95 (122)
169 cd06595 GH31_xylosidase_XylS-l 38.9 1.5E+02 0.0032 28.2 8.0 76 65-142 66-160 (292)
170 cd06589 GH31 The enzymes of gl 38.4 1.1E+02 0.0023 28.7 6.8 54 72-143 65-118 (265)
171 cd04739 DHOD_like Dihydroorota 37.6 2.6E+02 0.0057 27.1 9.6 38 88-142 99-136 (325)
172 PF04468 PSP1: PSP1 C-terminal 37.5 69 0.0015 24.3 4.4 60 106-165 14-82 (88)
173 KOG4257 Focal adhesion tyrosin 37.3 14 0.0003 38.7 0.7 17 451-467 394-410 (974)
174 cd06598 GH31_transferase_CtsZ 37.3 1.3E+02 0.0029 28.9 7.5 31 111-142 135-165 (317)
175 KOG1095 Protein tyrosine kinas 36.7 15 0.00033 40.9 0.9 17 451-467 697-713 (1025)
176 PF15330 SIT: SHP2-interacting 36.6 41 0.0009 26.6 3.1 6 397-402 18-23 (107)
177 PF01487 DHquinase_I: Type I 3 36.6 1.2E+02 0.0026 27.5 6.7 60 71-140 38-97 (224)
178 KOG0986 G protein-coupled rece 36.3 13 0.00028 37.2 0.3 19 446-464 185-203 (591)
179 PF12138 Spherulin4: Spherulat 36.3 3.6E+02 0.0078 25.1 10.1 76 71-164 51-134 (253)
180 PF01120 Alpha_L_fucos: Alpha- 35.4 3.4E+02 0.0074 26.5 10.1 86 71-160 136-234 (346)
181 TIGR01037 pyrD_sub1_fam dihydr 35.2 3E+02 0.0065 26.1 9.5 58 88-162 90-156 (300)
182 smart00633 Glyco_10 Glycosyl h 35.1 3.7E+02 0.0079 24.8 10.2 73 76-159 106-179 (254)
183 TIGR01478 STEVOR variant surfa 34.9 46 0.001 31.1 3.5 11 121-131 83-93 (295)
184 KOG0605 NDR and related serine 34.8 18 0.0004 36.9 1.1 21 446-466 141-161 (550)
185 PTZ00370 STEVOR; Provisional 34.8 40 0.00088 31.6 3.2 10 122-131 83-92 (296)
186 PRK08005 epimerase; Validated 34.6 1.4E+02 0.003 27.0 6.5 64 125-210 75-138 (210)
187 cd06593 GH31_xylosidase_YicI Y 34.5 1.7E+02 0.0038 27.9 7.8 31 110-141 129-159 (308)
188 PF12876 Cellulase-like: Sugar 34.1 63 0.0014 24.4 3.7 73 126-209 1-88 (88)
189 PRK09505 malS alpha-amylase; R 33.6 87 0.0019 33.8 5.9 29 112-140 435-463 (683)
190 PLN02711 Probable galactinol-- 33.3 2.1E+02 0.0046 31.0 8.4 93 73-165 305-434 (777)
191 PF02055 Glyco_hydro_30: O-Gly 33.2 1.5E+02 0.0033 30.7 7.4 92 76-167 156-270 (496)
192 PF03302 VSP: Giardia variant- 33.1 30 0.00066 34.6 2.3 11 376-386 367-377 (397)
193 TIGR00542 hxl6Piso_put hexulos 33.1 64 0.0014 30.3 4.5 47 121-167 19-66 (279)
194 KOG1006 Mitogen-activated prot 32.9 19 0.00041 33.6 0.7 26 434-466 59-84 (361)
195 KOG1166 Mitotic checkpoint ser 32.7 15 0.00033 40.7 0.2 21 446-466 698-718 (974)
196 COG2342 Predicted extracellula 32.4 1.4E+02 0.0031 28.0 6.2 48 120-167 128-185 (300)
197 PHA03212 serine/threonine kina 32.0 18 0.0004 36.0 0.6 21 446-466 92-112 (391)
198 TIGR01036 pyrD_sub2 dihydrooro 31.0 4.5E+02 0.0098 25.6 10.0 78 75-163 121-203 (335)
199 TIGR01477 RIFIN variant surfac 30.8 31 0.00067 33.4 1.8 6 400-405 333-338 (353)
200 KOG3111 D-ribulose-5-phosphate 30.1 2E+02 0.0044 25.5 6.4 64 125-210 81-144 (224)
201 PHA03211 serine/threonine kina 29.7 21 0.00046 36.5 0.6 22 446-467 169-190 (461)
202 PF01207 Dus: Dihydrouridine s 29.1 82 0.0018 30.3 4.5 60 87-163 52-122 (309)
203 PF14488 DUF4434: Domain of un 28.8 3.8E+02 0.0082 23.1 12.0 107 46-165 32-151 (166)
204 smart00812 Alpha_L_fucos Alpha 28.6 3.1E+02 0.0067 27.3 8.5 71 71-144 126-206 (384)
205 PF04414 tRNA_deacylase: D-ami 28.5 76 0.0016 28.7 3.8 66 90-158 131-207 (213)
206 KOG3035 Isoamyl acetate-hydrol 27.7 2.9E+02 0.0062 25.1 7.0 65 71-137 98-171 (245)
207 PF14610 DUF4448: Protein of u 27.4 37 0.0008 30.0 1.6 13 378-390 159-171 (189)
208 cd07321 Extradiol_Dioxygenase_ 27.3 69 0.0015 23.6 2.8 30 105-134 8-37 (77)
209 PRK09441 cytoplasmic alpha-amy 27.0 1.5E+02 0.0033 30.4 6.3 47 112-165 207-253 (479)
210 PRK15052 D-tagatose-1,6-bispho 26.8 6.6E+02 0.014 25.2 11.7 77 57-140 49-126 (421)
211 PF08501 Shikimate_dh_N: Shiki 26.7 1.5E+02 0.0033 22.0 4.7 54 125-204 17-70 (83)
212 PRK09722 allulose-6-phosphate 26.5 1.7E+02 0.0038 26.7 5.9 64 126-210 77-140 (229)
213 PF10566 Glyco_hydro_97: Glyco 26.5 3.1E+02 0.0067 25.9 7.6 78 71-164 71-148 (273)
214 PLN02982 galactinol-raffinose 26.3 3.3E+02 0.0071 29.8 8.4 70 72-141 389-492 (865)
215 PF15069 FAM163: FAM163 family 26.3 95 0.0021 25.9 3.6 17 383-399 10-26 (143)
216 cd06594 GH31_glucosidase_YihQ 26.2 2.4E+02 0.0053 27.2 7.2 67 73-141 71-166 (317)
217 TIGR01233 lacG 6-phospho-beta- 26.1 1.5E+02 0.0033 30.4 6.0 80 50-136 71-152 (467)
218 PF07582 AP_endonuc_2_N: AP en 26.0 1.3E+02 0.0028 20.6 3.7 41 121-162 3-44 (55)
219 KOG0694 Serine/threonine prote 25.8 27 0.00058 36.8 0.5 22 446-467 368-389 (694)
220 TIGR03234 OH-pyruv-isom hydrox 25.6 1.1E+02 0.0024 28.1 4.7 37 120-166 16-52 (254)
221 PRK10415 tRNA-dihydrouridine s 25.4 2.7E+02 0.0059 26.9 7.3 40 123-162 82-132 (321)
222 smart00518 AP2Ec AP endonuclea 25.4 1.6E+02 0.0034 27.5 5.7 45 122-166 14-58 (273)
223 PRK08091 ribulose-phosphate 3- 25.4 2.8E+02 0.0061 25.3 6.9 66 125-210 85-150 (228)
224 cd02911 arch_FMN Archeal FMN-b 24.9 5E+02 0.011 23.7 8.7 55 88-160 72-137 (233)
225 KOG1151 Tousled-like protein k 24.8 15 0.00032 36.7 -1.5 15 452-466 469-483 (775)
226 PRK14510 putative bifunctional 24.7 3.9E+02 0.0085 31.3 9.4 88 71-165 245-365 (1221)
227 PF00128 Alpha-amylase: Alpha 24.7 1.3E+02 0.0029 28.2 5.1 47 112-166 143-189 (316)
228 COG0429 Predicted hydrolase of 24.2 3E+02 0.0064 26.8 7.0 49 117-165 90-148 (345)
229 PRK13209 L-xylulose 5-phosphat 24.1 1.3E+02 0.0029 28.1 4.9 48 120-167 23-71 (283)
230 cd06601 GH31_lyase_GLase GLase 23.9 4.3E+02 0.0093 25.7 8.4 65 75-143 66-135 (332)
231 PF14606 Lipase_GDSL_3: GDSL-l 23.7 4E+02 0.0087 23.3 7.3 62 71-135 76-139 (178)
232 PRK09989 hypothetical protein; 23.5 1.6E+02 0.0034 27.3 5.2 36 121-166 18-53 (258)
233 PRK12677 xylose isomerase; Pro 23.5 2.3E+02 0.005 28.2 6.6 47 120-167 33-81 (384)
234 PF06697 DUF1191: Protein of u 23.4 71 0.0015 30.0 2.7 17 198-215 78-94 (278)
235 KOG0581 Mitogen-activated prot 23.4 56 0.0012 31.8 2.1 26 435-467 75-100 (364)
236 PRK08745 ribulose-phosphate 3- 23.3 2.6E+02 0.0057 25.4 6.4 64 125-210 79-142 (223)
237 KOG4236 Serine/threonine prote 23.2 32 0.00069 35.3 0.4 16 451-466 569-584 (888)
238 PF08885 GSCFA: GSCFA family; 23.1 98 0.0021 28.8 3.6 25 73-97 152-176 (251)
239 COG3410 Uncharacterized conser 22.5 1.5E+02 0.0033 25.4 4.2 46 109-157 143-188 (191)
240 TIGR02456 treS_nterm trehalose 22.3 2.5E+02 0.0055 29.4 6.9 55 111-166 171-231 (539)
241 TIGR02810 agaZ_gatZ D-tagatose 21.8 8.3E+02 0.018 24.6 12.5 93 147-258 189-287 (420)
242 cd01841 NnaC_like NnaC (CMP-Ne 21.5 4.9E+02 0.011 21.9 7.9 64 71-138 73-137 (174)
243 PRK13210 putative L-xylulose 5 21.4 1.6E+02 0.0035 27.5 5.0 48 120-167 18-66 (284)
244 PF06745 KaiC: KaiC; InterPro 21.4 3.8E+02 0.0082 24.0 7.2 91 113-213 97-189 (226)
245 cd04724 Tryptophan_synthase_al 21.4 6.4E+02 0.014 23.1 9.8 66 123-210 96-162 (242)
246 PF10731 Anophelin: Thrombin i 21.3 59 0.0013 22.4 1.3 13 1-13 1-13 (65)
247 PF03328 HpcH_HpaI: HpcH/HpaI 21.3 3.1E+02 0.0066 24.7 6.5 42 123-164 13-54 (221)
248 COG0036 Rpe Pentose-5-phosphat 21.0 3.9E+02 0.0084 24.3 6.8 64 125-210 78-141 (220)
249 PF13908 Shisa: Wnt and FGF in 20.7 46 0.001 29.0 0.9 12 377-388 80-91 (179)
250 TIGR00736 nifR3_rel_arch TIM-b 20.6 6E+02 0.013 23.3 8.1 54 88-159 67-131 (231)
251 TIGR02368 dimeth_PyL dimethyla 20.5 3.8E+02 0.0083 24.5 6.6 38 128-165 201-238 (466)
252 PHA03207 serine/threonine kina 20.3 40 0.00088 33.5 0.5 20 447-466 93-112 (392)
253 cd01827 sialate_O-acetylestera 20.3 5E+02 0.011 22.1 7.6 63 72-137 92-154 (188)
254 PF08374 Protocadherin: Protoc 20.0 67 0.0015 28.7 1.7 27 375-402 34-61 (221)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.2e-61 Score=462.22 Aligned_cols=288 Identities=51% Similarity=0.916 Sum_probs=260.6
Q ss_pred cEEEEEEcCCC-CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCc
Q 012202 26 LIKVGYWDSGD-GFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (468)
Q Consensus 26 ~~v~gY~~~~~-~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~ 104 (468)
-+++|||++|. .+.+++++.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+++|||||+. ++.
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s~ 81 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DSS 81 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCc
Confidence 46899999988 8999999999999999999999998877877766677778888889999999999999999986 467
Q ss_pred cchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccC
Q 012202 105 TYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHS 184 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~ 184 (468)
.|+.++++++.|++|++++++++++|+|||||||||+|..++|+++|+.||++||++|++..+. .++..++||+++|+.
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~-~~~~~~~ls~av~~~ 160 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARS-SGRPPLLLTAAVYFS 160 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhc-cCCCcEEEEeecccc
Confidence 8999999999999999999999999999999999999988789999999999999999976543 343449999999876
Q ss_pred ccc----ccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeE
Q 012202 185 PLS----TAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYG 260 (468)
Q Consensus 185 ~~~----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG 260 (468)
+.. ....||++++.++|||||||+||+||+|....++|+|||+.+....+++.+|+.|++.|+|++||+||+|+||
T Consensus 161 ~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YG 240 (299)
T cd02879 161 PILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYG 240 (299)
T ss_pred hhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccc
Confidence 654 3446899999999999999999999999777789999999877778999999999999999999999999999
Q ss_pred EeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEeCCEEEEEcCHHHHHHHHHHhh
Q 012202 261 FAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAK 340 (468)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~~~~~~s~~~k~~~~~ 340 (468)
|.|++ ||+.+.++|.+.+.+||+|||++|++.|++|++
T Consensus 241 r~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~ 278 (299)
T cd02879 241 RAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK 278 (299)
T ss_pred ccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH
Confidence 99952 788888999998899999999999999999999
Q ss_pred hcCcccEEEEeeccCcc
Q 012202 341 EKKLRGYYVWEVSYDHY 357 (468)
Q Consensus 341 ~~~L~G~~~~~l~~d~~ 357 (468)
+.+|+|+++|++++|+.
T Consensus 279 ~~~lgGv~~W~l~~Dd~ 295 (299)
T cd02879 279 QKGLLGYFAWAVGYDDN 295 (299)
T ss_pred hCCCCeEEEEEeecCCc
Confidence 99999999999999984
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=9.4e-61 Score=471.63 Aligned_cols=322 Identities=36% Similarity=0.621 Sum_probs=280.6
Q ss_pred EEEEEcCCC-------CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCc---chHHHHHHHHHHHhhCCCcEEEEEEeC
Q 012202 28 KVGYWDSGD-------GFPISDVNFALFTHLMCGFADVNSTTYELSLSPS---DEEQFSNFTDTVKIKNPSITTLLSIGG 97 (468)
Q Consensus 28 v~gY~~~~~-------~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~~~~kvllsigG 97 (468)
|+|||++|. .|.+++++.++||||+|+|+.++.+|........ ....+..+. .+|+++|++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 589999955 4678899999999999999999998644433322 234455554 78999999999999999
Q ss_pred CCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC----CCchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 012202 98 GNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT----SRDKYNIGILFKEWRAAVDLEARNNSSQS 173 (468)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~----~~~~~~~~~ll~~lr~~l~~~~~~~~~~~ 173 (468)
|.. ++..|+.++.+++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++.++.
T Consensus 80 ~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~----- 153 (362)
T cd02872 80 WNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPR----- 153 (362)
T ss_pred CCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcC-----
Confidence 986 4568999999999999999999999999999999999999874 478899999999999999987433
Q ss_pred eEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCC------CCCcHHHHHHHHHHcCC
Q 012202 174 QLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPN------SVSNTEYGITEWIEEGL 247 (468)
Q Consensus 174 ~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~------~~~~~~~~~~~~~~~g~ 247 (468)
++||+++|+.+......||++++.+++|+|+||+||+|++| ...++++|||+... ...+++.+|++|++.|+
T Consensus 154 -~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gv 231 (362)
T cd02872 154 -LLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGA 231 (362)
T ss_pred -eEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Confidence 89999999876555556899999999999999999999997 46799999998633 24679999999999999
Q ss_pred CCCceEEecceeEEeeeecCCCCCCCCCccCCCC-----CCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEeCCE
Q 012202 248 SADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPA-----LYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKI 322 (468)
Q Consensus 248 ~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~ 322 (468)
|++||+||+|+||+.|++.++.++++++|+.+++ ...+|.++|.|||+.+ ..+ +...||+.+++||.|.+++
T Consensus 232 p~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 232 PPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCE
Confidence 9999999999999999999888888888887654 2567899999999988 667 8999999999999998899
Q ss_pred EEEEcCHHHHHHHHHHhhhcCcccEEEEeeccCcchhhh
Q 012202 323 WFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLS 361 (468)
Q Consensus 323 ~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d~~~~~~ 361 (468)
||+|||++|+..|.+|+.+.+|+|+++|+++.||....|
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~c 347 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTC 347 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCcc
Confidence 999999999999999999999999999999999976654
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=2.5e-58 Score=456.80 Aligned_cols=325 Identities=29% Similarity=0.500 Sum_probs=264.0
Q ss_pred EEEEEEcCCC-------CCCCCCCCCCC--CcEEEEEeEEeeCCCcEEecCCc----chHHHHHHHHHHHhhCCCcEEEE
Q 012202 27 IKVGYWDSGD-------GFPISDVNFAL--FTHLMCGFADVNSTTYELSLSPS----DEEQFSNFTDTVKIKNPSITTLL 93 (468)
Q Consensus 27 ~v~gY~~~~~-------~~~~~~~~~~~--~thi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~~~~kvll 93 (468)
+++|||++|. .+.++++|... ||||+|+|+.++++++.+...+. +...+..+. .+|+++|++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 4799999854 45688898765 99999999999998766655443 224556654 6899999999999
Q ss_pred EEeCCCCCC----CccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-------------------------
Q 012202 94 SIGGGNNPN----YSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT------------------------- 144 (468)
Q Consensus 94 sigG~~~~~----~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~------------------------- 144 (468)
|||||..++ +..|+.++++++.|++||++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999997521 357999999999999999999999999999999999999863
Q ss_pred -----CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCC-
Q 012202 145 -----SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTN- 218 (468)
Q Consensus 145 -----~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~- 218 (468)
++|+++|+.||++||++|++.+ ++|++++++.... ...||+++|.++|||||||+||+|++|+.+
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~--------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~ 230 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG--------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPE 230 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC--------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCC
Confidence 3578999999999999998865 6788887543222 234899999999999999999999998754
Q ss_pred CCCCCCCCCCCC---CCCcHHHHHHHHHHcCCCCCceEEecceeEEeeeecCCC-CCCCC--CccC-----CCCCCCCcc
Q 012202 219 FTGAHAALYDPN---SVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPE-DNGIG--AAAT-----GPALYDDGL 287 (468)
Q Consensus 219 ~~~~~apl~~~~---~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~-~~~~~--~~~~-----~~~~~~~~~ 287 (468)
.++++|||+... ..++++.+|+.|++.|+|++||+||+|+|||.|+++++. +.+.+ +++. |+.+.++|.
T Consensus 231 ~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~ 310 (413)
T cd02873 231 EADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGL 310 (413)
T ss_pred ccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCcc
Confidence 689999998643 256899999999999999999999999999999988653 22221 2333 334467789
Q ss_pred ccHHHHHHHhhcCC------CCeEEEEeccee-eEEEEe-------CCEEEEEcCHHHHHHHHHHhhhcCcccEEEEeec
Q 012202 288 VTYKEIKNHIKNYG------PNVRVMYNSTYV-VNYCSI-------GKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVS 353 (468)
Q Consensus 288 ~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~ 353 (468)
++|.|||+.+...+ ..+...||+..+ .+|.|. .++||+|||++|+..|++|+.+.+|+|+++|+++
T Consensus 311 l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~ 390 (413)
T cd02873 311 LSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLS 390 (413)
T ss_pred ccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeee
Confidence 99999999876421 125677898876 588882 2579999999999999999999999999999999
Q ss_pred cCcchhhh
Q 012202 354 YDHYWMLS 361 (468)
Q Consensus 354 ~d~~~~~~ 361 (468)
.|+....|
T Consensus 391 ~DD~~g~c 398 (413)
T cd02873 391 LDDFRGQC 398 (413)
T ss_pred cCcCCCCc
Confidence 99965544
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.2e-57 Score=445.52 Aligned_cols=316 Identities=34% Similarity=0.633 Sum_probs=272.2
Q ss_pred EEEEEEcCCCC----CCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcch--HHHHHHHHHHHhhCCCcEEEEEEeCCCC
Q 012202 27 IKVGYWDSGDG----FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDE--EQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (468)
Q Consensus 27 ~v~gY~~~~~~----~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~kvllsigG~~~ 100 (468)
+++|||++|.. +.+++++.++||||+|+|+.++++| .+...++.. ..+..+ ..+|+++|++|++++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQL-KALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHH-HHHHHhCCCCEEEEEEeCCCC
Confidence 47999999763 7899999999999999999999975 555544332 245555 468888999999999999986
Q ss_pred CCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-CchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 012202 101 PNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS-RDKYNIGILFKEWRAAVDLEARNNSSQSQLILTA 179 (468)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~-~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~ 179 (468)
+..|+.++.+++.|++|+++|++++++|+|||||||||+|... +++.+|+.||++||.+|++... . .+.++||+
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~~lsi 153 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA--E-GKGYLLTI 153 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc--c-CCceEEEE
Confidence 6889999999999999999999999999999999999998753 5788999999999999997521 1 11299999
Q ss_pred EeccCcccccCCCC-hhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCC---CCcHHHHHHHHHHcCCCCCceEEe
Q 012202 180 KVAHSPLSTAAAYP-VDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNS---VSNTEYGITEWIEEGLSADKLVLC 255 (468)
Q Consensus 180 a~~~~~~~~~~~~~-~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~---~~~~~~~~~~~~~~g~~~~Ki~lg 255 (468)
++|+.+......|+ ++++.+++|+|+||+||+|++|. ..+||+|||+.... ..+++.+++.|++.|+|++||+||
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 99976655444578 59999999999999999999874 57999999985433 458999999999999999999999
Q ss_pred cceeEEeeeecCCCCCCCCCccCCCCC-----CCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEe-C-CEEEEEcC
Q 012202 256 LPFYGFAWTLVKPEDNGIGAAATGPAL-----YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSI-G-KIWFGFDD 328 (468)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~~~~ 328 (468)
+|+||+.|++.++.++++++|..|++. ..++.++|.|+|+.+ + +...||+.++++|.|. + ++||||||
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999888888888876542 467889999999965 5 8999999999999995 4 59999999
Q ss_pred HHHHHHHHHHhhhcCcccEEEEeeccC
Q 012202 329 VEAVRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 329 ~~s~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
++|++.|++|+.+.+|+|+++|++++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999875
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=450.38 Aligned_cols=333 Identities=28% Similarity=0.483 Sum_probs=288.8
Q ss_pred ccCCcEEEEEEcCCC-CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCC
Q 012202 22 RAQTLIKVGYWDSGD-GFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (468)
Q Consensus 22 ~~~~~~v~gY~~~~~-~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~ 100 (468)
..|.++.+|||..+. ...+..++..+|||++|+|+.++.++......+.....+..+.+.+|..+|++|+|+|||||.+
T Consensus 54 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ 133 (432)
T KOG2806|consen 54 TVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG 133 (432)
T ss_pred ccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC
Confidence 346678899999888 8899999999999999999999999876666665667788888899999999999999999942
Q ss_pred CCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC-CCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 012202 101 PNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN-TSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTA 179 (468)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~-~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~ 179 (468)
++..|+.++++++.|+.||++++++|++|+|||||||||+|. .+.|+.+|..|++|||.+|.++.+. ..++...|+.
T Consensus 134 -ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~-~~~~~~~l~~ 211 (432)
T KOG2806|consen 134 -NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLK-SPDTAKVLEA 211 (432)
T ss_pred -CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhc-cCCccceeee
Confidence 488999999999999999999999999999999999999996 5589999999999999999998776 4444445666
Q ss_pred EeccCcc-cccCCCChhHHhccccEEeeecccccCCCCCC-CCCCCCCCCCC----CCCCcHHHHHHHHHHcCCCCCceE
Q 012202 180 KVAHSPL-STAAAYPVDSIRQYLNWVHVMTTGYSKPTWTN-FTGAHAALYDP----NSVSNTEYGITEWIEEGLSADKLV 253 (468)
Q Consensus 180 a~~~~~~-~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~-~~~~~apl~~~----~~~~~~~~~~~~~~~~g~~~~Ki~ 253 (468)
++..++. ....+||+++|.+++||||||+||++|+|+++ .+||+||||.+ ...++++..+++|++.|.||+|++
T Consensus 212 ~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~ 291 (432)
T KOG2806|consen 212 VVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLV 291 (432)
T ss_pred ccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheE
Confidence 6655544 56678999999999999999999999999864 89999999975 346799999999999999999999
Q ss_pred EecceeEEeeeecCCCCCCCCCccCCCC------CCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEe--CCEEEE
Q 012202 254 LCLPFYGFAWTLVKPEDNGIGAAATGPA------LYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSI--GKIWFG 325 (468)
Q Consensus 254 lglp~yG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~ 325 (468)
||+|+||+.|++++...+ ++.+..+++ ...++.++|.|||+...+.+ ...||+.++++|+|. +++||+
T Consensus 292 ~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvt 367 (432)
T KOG2806|consen 292 LALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVT 367 (432)
T ss_pred EEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEe
Confidence 999999999999987665 444433332 23678999999999655433 689999999999998 999999
Q ss_pred EcCHHHHHHHHHHhhhcCcccEEEEeeccCcchhh
Q 012202 326 FDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWML 360 (468)
Q Consensus 326 ~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d~~~~~ 360 (468)
|||++|+..|+.|+++.+|+|+++|.+++||....
T Consensus 368 yen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~ 402 (432)
T KOG2806|consen 368 YENERSIHIKADYAKDEGLGGVAIWNIDQDDESGS 402 (432)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc
Confidence 99999999999999999999999999999996543
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-58 Score=429.23 Aligned_cols=328 Identities=26% Similarity=0.442 Sum_probs=262.1
Q ss_pred cccCCcEEEEEEcCCC-----CCCCCCCCCCCCcEEEEEeEEeeCCCcEEe----c-------C-------Cc----chH
Q 012202 21 ARAQTLIKVGYWDSGD-----GFPISDVNFALFTHLMCGFADVNSTTYELS----L-------S-------PS----DEE 73 (468)
Q Consensus 21 ~~~~~~~v~gY~~~~~-----~~~~~~~~~~~~thi~~~~~~~~~~~~~~~----~-------~-------~~----~~~ 73 (468)
...++.+++|||++|+ .|.+.++|++++|||+|+|+.|+.++.... . . ++ ...
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G 112 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKG 112 (441)
T ss_pred CCCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccc
Confidence 3445688999999976 466788999999999999999999874210 0 0 00 122
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------
Q 012202 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT--------- 144 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~--------- 144 (468)
.+. ..+.+|+++|++|+++|||||+. |..|+.++.+++.|++|++++++++++|+|||||||||||++
T Consensus 113 ~~~-~L~~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~ 189 (441)
T COG3325 113 HFG-ALFDLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGR 189 (441)
T ss_pred hHH-HHHHHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCC
Confidence 233 34579999999999999999997 999999999999999999999999999999999999999984
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCC
Q 012202 145 SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHA 224 (468)
Q Consensus 145 ~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~a 224 (468)
+.+.++|+.||++||++|.+.+.+ .|++ ++||+|.|+.+.... ..+..++.+++||||+|||||||.| +..+||||
T Consensus 190 ~~d~~ny~~Ll~eLR~~LD~a~~e-dgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a 265 (441)
T COG3325 190 PKDKANYVLLLQELRKKLDKAGVE-DGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHA 265 (441)
T ss_pred cccHHHHHHHHHHHHHHHhhcccc-cCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-cccccccc
Confidence 468899999999999999998877 7777 999999999888776 6788999999999999999999998 67899999
Q ss_pred CCCCCC------C-------CCcHHHHHHHHHHcCCCCCceEEecceeEEeeeecCCCCCC----CCCccC--CC--CCC
Q 012202 225 ALYDPN------S-------VSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNG----IGAAAT--GP--ALY 283 (468)
Q Consensus 225 pl~~~~------~-------~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~----~~~~~~--~~--~~~ 283 (468)
|||+.. + .......++.....++||+|||||+|+|||.|..++....+ ..+... |+ +++
T Consensus 266 ~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw 345 (441)
T COG3325 266 ALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTW 345 (441)
T ss_pred ccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcc
Confidence 999511 1 12222355566667899999999999999999998875532 211111 11 122
Q ss_pred CCccc--cHH---HHH-HHhhcCCCCeEEEEecceeeEEEE--eCCEEEEEcCHHHHHHHHHHhhhcCcccEEEEeeccC
Q 012202 284 DDGLV--TYK---EIK-NHIKNYGPNVRVMYNSTYVVNYCS--IGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 284 ~~~~~--~y~---~i~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
..+.. .|. .+- .....++ +.+.||+.+.+||+| ..+.+|+|||++|++.|.+|+.+++|+|.+.|++++|
T Consensus 346 ~a~n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD 423 (441)
T COG3325 346 EAGNGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423 (441)
T ss_pred cccccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC
Confidence 22222 221 221 2333455 999999999999999 5689999999999999999999999999999999999
Q ss_pred cc
Q 012202 356 HY 357 (468)
Q Consensus 356 ~~ 357 (468)
.+
T Consensus 424 ~n 425 (441)
T COG3325 424 EN 425 (441)
T ss_pred cc
Confidence 43
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=3.1e-57 Score=440.44 Aligned_cols=308 Identities=17% Similarity=0.319 Sum_probs=250.6
Q ss_pred EEEEEEcCCC------CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCC
Q 012202 27 IKVGYWDSGD------GFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNN 100 (468)
Q Consensus 27 ~v~gY~~~~~------~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~ 100 (468)
++||||++|. .+.++++|.++||||+|+|+.+++++ .+...+ ....+..+. .+ + ++||++|||||..
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~--k--~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KL--K--GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hh--c--CcEEEEEEeCCCC
Confidence 4799999974 46788999999999999999999875 555543 334444443 22 2 4999999999986
Q ss_pred CCC----ccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC----------CCchhhHHHHHHHHHHHHHHHh
Q 012202 101 PNY----STYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT----------SRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 101 ~~~----~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~----------~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
+.. ..|+.++ ++++|++|++++++++++|+|||||||||+|.. ++|+++|+.||++||++|++.
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~~- 151 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPSG- 151 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCcC-
Confidence 111 1477887 999999999999999999999999999999863 357899999999999999862
Q ss_pred hcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCC-------CCCCCCCcHHHHH
Q 012202 167 RNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAAL-------YDPNSVSNTEYGI 239 (468)
Q Consensus 167 ~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl-------~~~~~~~~~~~~~ 239 (468)
++||+++|+.+... ..||++++.+++||||||+||+||+|.. .+.+++|. .......+++.+|
T Consensus 152 --------~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~~~~~~p~~p~~~~~~~~~~~~~~~~~v 221 (345)
T cd02878 152 --------KSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDY-GNKWASPGCPAGNCLRSHVNKTETLDAL 221 (345)
T ss_pred --------cEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCc-cCCcCCCCCCcccccccCCCchhHHHHH
Confidence 78999988765433 3589999999999999999999999863 33444432 1111223588999
Q ss_pred HHHHHcCCCCCceEEecceeEEeeeecCCCCCCCCCccCCCCC--------CCCccccHHHHHHHh-hcCCCCeEEEEec
Q 012202 240 TEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPAL--------YDDGLVTYKEIKNHI-KNYGPNVRVMYNS 310 (468)
Q Consensus 240 ~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~y~~i~~~~-~~~~~~~~~~~d~ 310 (468)
+.|++.|+|++||+||+|+|||.|++.++.++++++|+.|++. +..+.+.|.++|..+ ..++ ++..||+
T Consensus 222 ~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~ 299 (345)
T cd02878 222 SMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDT 299 (345)
T ss_pred HHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEec
Confidence 9999999999999999999999999999999999999887642 233445568998754 4456 8999999
Q ss_pred ceeeEEE-EeCCEEEEEcCHHHHHHHHHHhhhcCcccEEEEeeccC
Q 012202 311 TYVVNYC-SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 311 ~~~~~y~-~~~~~~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
.+.+||. |.+.+||+|||++|+..|++|+++.+|+|+++|+++.|
T Consensus 300 ~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 300 DSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 9999987 56779999999999999999999999999999998765
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1e-56 Score=434.36 Aligned_cols=283 Identities=29% Similarity=0.518 Sum_probs=245.5
Q ss_pred EEEEEcCCCCCCC----C-CCCCCCCcEEEEEeEEeeCCCcEEecC-------------------CcchHHHHHHHHHHH
Q 012202 28 KVGYWDSGDGFPI----S-DVNFALFTHLMCGFADVNSTTYELSLS-------------------PSDEEQFSNFTDTVK 83 (468)
Q Consensus 28 v~gY~~~~~~~~~----~-~~~~~~~thi~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~k 83 (468)
|+|||++|..+.. . ++|.++||||+|+|+.+++++...... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 5899999876543 3 488899999999999999987655422 11334555664 789
Q ss_pred hhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------CCchhhHHHH
Q 012202 84 IKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT---------SRDKYNIGIL 154 (468)
Q Consensus 84 ~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~---------~~~~~~~~~l 154 (468)
+++|++||+++||||+. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999986 788999999999999999999999999999999999999975 4788999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCC----
Q 012202 155 FKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPN---- 230 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~---- 230 (468)
|++||++|++.+.. +++. ++||+++|+.+.... .++++++.+++|+||||+||+|++|. ..+|++|||+...
T Consensus 158 l~~Lr~~l~~~~~~-~~~~-~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 158 LKELREALDALGAE-TGRK-YLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHhhhc-cCCc-eEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCC
Confidence 99999999987533 3333 999999998765433 47899999999999999999999985 6799999998644
Q ss_pred CCCcHHHHHHHHHHcCCCCCceEEecceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEec
Q 012202 231 SVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNS 310 (468)
Q Consensus 231 ~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~ 310 (468)
...+++.+++.|++.|+|++||+||||+|||.|++ +...||+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~ 275 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDE 275 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcC
Confidence 36789999999999999999999999999999952 4689999
Q ss_pred ceeeEEEEeC--CEEEEEcCHHHHHHHHHHhhhcCcccEEEEeeccC
Q 012202 311 TYVVNYCSIG--KIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 311 ~~~~~y~~~~--~~~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
.+++||.|.+ ++||+|||++|++.|++|+.+.+|+|+++|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999966 89999999999999999999999999999999875
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.4e-52 Score=408.78 Aligned_cols=321 Identities=31% Similarity=0.553 Sum_probs=269.8
Q ss_pred cEEEEEEcCCCC-----CCCCCCCCCCCcEEEEEeEEeeCCCcEEe-----cCCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 26 LIKVGYWDSGDG-----FPISDVNFALFTHLMCGFADVNSTTYELS-----LSPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 26 ~~v~gY~~~~~~-----~~~~~~~~~~~thi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
++|+|||+.|.. +.+++++.+.||||+|+|+.++.++.... ...............+|+++|++||+++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsi 80 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSI 80 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEe
Confidence 589999999754 55789999999999999999999986542 22333333334445788889999999999
Q ss_pred eCCCCCCCc-cchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC---CchhhHHHHHHHHHHHHHHHhhcCCC
Q 012202 96 GGGNNPNYS-TYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS---RDKYNIGILFKEWRAAVDLEARNNSS 171 (468)
Q Consensus 96 gG~~~~~~~-~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~---~~~~~~~~ll~~lr~~l~~~~~~~~~ 171 (468)
||+.. +. .|..++.+++.|++|+++|++++++|+|||||||||++... +++.+|..||++||.+|++.... .
T Consensus 81 gg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-~- 156 (343)
T PF00704_consen 81 GGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRS-G- 156 (343)
T ss_dssp EETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHH-H-
T ss_pred ccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhcccccc-c-
Confidence 99986 55 89999999999999999999999999999999999999763 58999999999999999996431 0
Q ss_pred CceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCC---CCCcHHHHHHHHHHcCCC
Q 012202 172 QSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPN---SVSNTEYGITEWIEEGLS 248 (468)
Q Consensus 172 ~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~---~~~~~~~~~~~~~~~g~~ 248 (468)
+ .++||+++|+.+.... .++++++.+++|||++|+||++++|.+ .++|++||++.. ...+++.+++.|+..|+|
T Consensus 157 ~-~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p 233 (343)
T PF00704_consen 157 K-GYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVP 233 (343)
T ss_dssp S-TSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTST
T ss_pred c-eeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccCC
Confidence 1 1899999987766433 348899999999999999999998765 899999998654 467899999999999999
Q ss_pred CCceEEecceeEEeeeecCCCCCCCCCcc---CCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEeC--CEE
Q 012202 249 ADKLVLCLPFYGFAWTLVKPEDNGIGAAA---TGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIG--KIW 323 (468)
Q Consensus 249 ~~Ki~lglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~~ 323 (468)
++||+||+|+||+.|++.++......++. .+..+..++.++|.++|..++.++ +...||+.++++|.+.. ++|
T Consensus 234 ~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~~ 311 (343)
T PF00704_consen 234 PSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKHW 311 (343)
T ss_dssp GGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTEE
T ss_pred hhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCeE
Confidence 99999999999999999988777665543 344556788999999999998788 99999999999999966 799
Q ss_pred EEEcCHHHHHHHHHHhhhcCcccEEEEeeccC
Q 012202 324 FGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 324 i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
++|||++|+..|+.|+.+.||+|+++|+++.|
T Consensus 312 i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 312 ISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 99999999999999999999999999998865
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=5.6e-52 Score=400.86 Aligned_cols=290 Identities=18% Similarity=0.262 Sum_probs=239.6
Q ss_pred EEEEEEcCCC--CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEE--EEEeCCCCCC
Q 012202 27 IKVGYWDSGD--GFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTL--LSIGGGNNPN 102 (468)
Q Consensus 27 ~v~gY~~~~~--~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvl--lsigG~~~~~ 102 (468)
.++|||++|. .+.+.+++.++||||+++|+.++++++.+...+..... ...+..+|+++|++||+ +++|||..
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4789999976 45677788899999999999999987655554321111 23456788899999999 66799875
Q ss_pred CccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCCC---CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 012202 103 YSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLS-WNSANT---SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILT 178 (468)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD-~E~~~~---~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls 178 (468)
+.|+.++++++.|++||+++++++++||||||||| ||+|.. ++++.+|+.||++||++|++.+ +.++
T Consensus 81 -~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~--------~~l~ 151 (318)
T cd02876 81 -QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN--------LKLI 151 (318)
T ss_pred -HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC--------CEEE
Confidence 46999999999999999999999999999999999 999865 3588999999999999999876 4566
Q ss_pred EEeccCccc-----ccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcC-CCCCce
Q 012202 179 AKVAHSPLS-----TAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEG-LSADKL 252 (468)
Q Consensus 179 ~a~~~~~~~-----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g-~~~~Ki 252 (468)
+++|+.... ....||++++.+++|+||||+||+|++ ..+||+||++ +++.+++++++.| +|++||
T Consensus 152 ~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~Kl 222 (318)
T cd02876 152 LVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKI 222 (318)
T ss_pred EEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHe
Confidence 666543321 223589999999999999999999975 6799999998 8999999999987 999999
Q ss_pred EEecceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeE-EEEeC---CEEEEEcC
Q 012202 253 VLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVN-YCSIG---KIWFGFDD 328 (468)
Q Consensus 253 ~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~~~---~~~i~~~~ 328 (468)
+||||+|||.|++.+ . .+.+++.+.++++++.+ ++..||+.+..+ |.|.+ ++||||||
T Consensus 223 vlGip~YG~~w~~~~-----~-----------~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd 284 (318)
T cd02876 223 LLGLNFYGNDYTLPG-----G-----------GGAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPT 284 (318)
T ss_pred EEeccccccccccCC-----C-----------CceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCC
Confidence 999999999997643 1 12344556666666666 889999996555 77743 79999999
Q ss_pred HHHHHHHHHHhhhcCcccEEEEeeccCc
Q 012202 329 VEAVRVKVSYAKEKKLRGYYVWEVSYDH 356 (468)
Q Consensus 329 ~~s~~~k~~~~~~~~L~G~~~~~l~~d~ 356 (468)
++|+..|++++.+.+| |+++|+++++.
T Consensus 285 ~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 285 LKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 9999999999999999 99999999876
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.3e-49 Score=387.39 Aligned_cols=295 Identities=19% Similarity=0.249 Sum_probs=237.0
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCc
Q 012202 25 TLIKVGYWDSGDGFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (468)
Q Consensus 25 ~~~v~gY~~~~~~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~ 104 (468)
.+.|+||.... ..-...+++.+|||... + +.+. .++..+|++ ++||+++ ++..
T Consensus 35 ~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~~----~~~~~A~~~--~v~v~~~-~~~~----- 87 (358)
T cd02875 35 RFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DIDD----ELLCYAHSK--GVRLVLK-GDVP----- 87 (358)
T ss_pred ceEEEEEEeCC--CcCcccccccceEEEec-------C------CCCH----HHHHHHHHc--CCEEEEE-CccC-----
Confidence 46799999753 55577888999999976 1 1111 344444444 8999987 2222
Q ss_pred cchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC--CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEec
Q 012202 105 TYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT--SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVA 182 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~--~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (468)
...+.++++|++||+++++++++|||||||||||+|.. ++++++|+.||++||++|+++++. ++||++++
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~------~~Lsvav~ 159 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPG------YQISFDVA 159 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCC------cEEEEEEe
Confidence 24577999999999999999999999999999999974 468899999999999999987655 88999998
Q ss_pred cCcccccC-CCChhHHhccccEEeeecccccCC-CC-CCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEeccee
Q 012202 183 HSPLSTAA-AYPVDSIRQYLNWVHVMTTGYSKP-TW-TNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFY 259 (468)
Q Consensus 183 ~~~~~~~~-~~~~~~l~~~~D~v~lm~yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~y 259 (468)
+.+..... .||+++|.+++|||||||||+|+. |. .+.++|+||+. +++.+++.|++.|+|++||+||+|+|
T Consensus 160 ~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip~Y 233 (358)
T cd02875 160 WSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLPWY 233 (358)
T ss_pred cCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeCCC
Confidence 76654333 399999999999999999999976 54 35689999987 89999999999999999999999999
Q ss_pred EEeeeecCCC-----CCCCCCccCCCCC--CCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEE-e---C-CEEEEEc
Q 012202 260 GFAWTLVKPE-----DNGIGAAATGPAL--YDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCS-I---G-KIWFGFD 327 (468)
Q Consensus 260 G~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~~~ 327 (468)
||+|++.++. +..++.|..|... ..++.++|.|+++.+++.+ +.+.||+.+++||.+ . + .+|||||
T Consensus 234 Gr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~yd 311 (358)
T cd02875 234 GYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYD 311 (358)
T ss_pred CCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeC
Confidence 9999876543 1123334433221 2245799999999888776 789999999999874 2 2 2799999
Q ss_pred CHHHHHHHHHHhhhcCcccEEEEeeccCcchhhhh
Q 012202 328 DVEAVRVKVSYAKEKKLRGYYVWEVSYDHYWMLSR 362 (468)
Q Consensus 328 ~~~s~~~k~~~~~~~~L~G~~~~~l~~d~~~~~~~ 362 (468)
|++|+..|++|+++.+|+|+++|+++.||....+.
T Consensus 312 D~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 312 NPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 99999999999999999999999999999665543
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=6.6e-48 Score=372.43 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=239.9
Q ss_pred EEEEEEcCCCCC--CCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCC--CC
Q 012202 27 IKVGYWDSGDGF--PISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNN--PN 102 (468)
Q Consensus 27 ~v~gY~~~~~~~--~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~--~~ 102 (468)
.++|||.+|... .......+++|||++.|+.+.++|. +... . ...++..+|++ ++|++++|||+.. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 589999986654 4545567899999999999999873 3222 1 13456556655 8999999999862 13
Q ss_pred CccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEec
Q 012202 103 YSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVA 182 (468)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (468)
+..++.++.+++.|++|++++++++++|+|||||||||++.. +++.+|+.||++||.+|++.+ +.|+++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~--------~~lsv~~~ 145 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAG--------YTLSTAVV 145 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcC--------cEEEEEec
Confidence 567899999999999999999999999999999999999864 788999999999999999765 67887766
Q ss_pred cCcc-----cccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecc
Q 012202 183 HSPL-----STAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLP 257 (468)
Q Consensus 183 ~~~~-----~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp 257 (468)
+... .+...|+++++.+++|+|+||+||+|++| +.+||+||+. +++..++++. .|+|++||+||||
T Consensus 146 p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip 216 (313)
T cd02874 146 PKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIP 216 (313)
T ss_pred CccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeec
Confidence 4422 12345899999999999999999999885 5689999986 7778877665 7899999999999
Q ss_pred eeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEE-E-e---CCEEEEEcCHHHH
Q 012202 258 FYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYC-S-I---GKIWFGFDDVEAV 332 (468)
Q Consensus 258 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~-~-~---~~~~i~~~~~~s~ 332 (468)
+||+.|++.+++ ....+.++|.++++++.+.+ +...||+.++++|. | + ..+||||||++|+
T Consensus 217 ~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si 282 (313)
T cd02874 217 LYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSL 282 (313)
T ss_pred ccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHH
Confidence 999999865421 11246788999999998888 89999999999975 4 2 2589999999999
Q ss_pred HHHHHHhhhcCcccEEEEeeccCc
Q 012202 333 RVKVSYAKEKKLRGYYVWEVSYDH 356 (468)
Q Consensus 333 ~~k~~~~~~~~L~G~~~~~l~~d~ 356 (468)
..|.+++++.+|+|+++|++++|+
T Consensus 283 ~~K~~~~~~~~lgGv~iW~lg~dD 306 (313)
T cd02874 283 QAKFELAKEYGLRGVSYWRLGLED 306 (313)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCC
Confidence 999999999999999999999998
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=2.3e-44 Score=343.52 Aligned_cols=286 Identities=13% Similarity=0.135 Sum_probs=226.9
Q ss_pred EEEEEcCCCCCC--CCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcc
Q 012202 28 KVGYWDSGDGFP--ISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYST 105 (468)
Q Consensus 28 v~gY~~~~~~~~--~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~ 105 (468)
++|||..|.... ........+|||++.|+++...++.+..... . .....+..+|.++|-++++..++|+.. ++..
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-~-~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~~ 78 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-P-QGVAIIAAAKAHPKVLPLVQNISGGAW-DGKN 78 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC-h-HHHHHHHHHHcCCceeEEEEecCCCCC-CHHH
Confidence 689999875433 3334557899999999999855456654322 2 222334566777778888889887665 3467
Q ss_pred chHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCc
Q 012202 106 YSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
|+.++++++.|++|++++++++++|+|||||||||++.. +++++|+.||++||++|++.+ +.|++++|+.+
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~--------~~lsv~v~~~~ 149 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQG--------KQLTVTVPADE 149 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcC--------cEEEEEecCCC
Confidence 999999999999999999999999999999999998764 889999999999999999875 67888888653
Q ss_pred ccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEeeee
Q 012202 186 LSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTL 265 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~ 265 (468)
..||++++.+++|+|+||+||+|+++ ..++|.+|.. +++..++.. ..++|++||+||||+||++|++
T Consensus 150 ----~~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~------~~~~~~~~~-~~~vp~~KlvlGip~YG~~w~~ 216 (298)
T cd06549 150 ----ADWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD------WFESNLAQA-VKKLPPEKLIVALGSYGYDWTK 216 (298)
T ss_pred ----CCCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh------hHHHHHHHH-HhCCCHHHEEEEecccCccccC
Confidence 24899999999999999999999764 4577777764 666677665 4689999999999999999975
Q ss_pred cCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeE-EEE-e---CCEEEEEcCHHHHHHHHHHhh
Q 012202 266 VKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVN-YCS-I---GKIWFGFDDVEAVRVKVSYAK 340 (468)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~i~~~~~~s~~~k~~~~~ 340 (468)
..+ ...++..+...++.+.+ ..+.||+....+ |.| + ..|+|||+|+.|+..|+++++
T Consensus 217 ~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~ 278 (298)
T cd06549 217 GGN----------------TKAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQ 278 (298)
T ss_pred CCC----------------CcccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHH
Confidence 321 12344566666666666 678898877666 455 2 247999999999999999999
Q ss_pred hcCcccEEEEeeccCc
Q 012202 341 EKKLRGYYVWEVSYDH 356 (468)
Q Consensus 341 ~~~L~G~~~~~l~~d~ 356 (468)
+.+|.|+++|+++.++
T Consensus 279 ~~~l~Gva~W~lg~ed 294 (298)
T cd06549 279 RLGPAGVALWRLGSED 294 (298)
T ss_pred HcCCCcEEEEeccCCC
Confidence 9999999999999887
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=8e-44 Score=332.76 Aligned_cols=240 Identities=26% Similarity=0.524 Sum_probs=203.2
Q ss_pred EEEEEcCCCCCC--CCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcc
Q 012202 28 KVGYWDSGDGFP--ISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYST 105 (468)
Q Consensus 28 v~gY~~~~~~~~--~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~ 105 (468)
|+|||++|.... +++++..+||||+++|+.++++| .+...+. ...+..+++.+|+ +++||+++|||+.. +.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~---~~ 73 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSP---PE 73 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCC---Cc
Confidence 589999988765 78899999999999999999986 4555432 3345566655654 48999999999875 34
Q ss_pred chHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCc
Q 012202 106 YSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
+..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++.+ +.||+++++..
T Consensus 74 ~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~--------~~lt~av~~~~ 143 (253)
T cd06545 74 FTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEG--------KLLTAAVSSWN 143 (253)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcC--------cEEEEEccCcc
Confidence 6778999999999999999999999999999999998753 7899999999999998865 67899887543
Q ss_pred ccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC-CCCceEEecceeEEeee
Q 012202 186 LSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGL-SADKLVLCLPFYGFAWT 264 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~-~~~Ki~lglp~yG~~~~ 264 (468)
.. .+ ..++.+++|+|+||+||++|+|....++|++|+. +++.++++|+..|+ |++||+||+|+||++|+
T Consensus 144 ~~---~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~ 213 (253)
T cd06545 144 GG---AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYGFY 213 (253)
T ss_pred cc---cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCcccccc
Confidence 21 13 3578899999999999999998777899999986 78999999999998 99999999999999882
Q ss_pred ecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEEeCCEEEEEcCHHHHHHHHHHhhhcCc
Q 012202 265 LVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKL 344 (468)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~~~~~~s~~~k~~~~~~~~L 344 (468)
|+++.++..|..++... +
T Consensus 214 -------------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 214 -------------------------------------------------------------YNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHh-c
Confidence 44567888999999999 9
Q ss_pred ccEEEEeeccCc
Q 012202 345 RGYYVWEVSYDH 356 (468)
Q Consensus 345 ~G~~~~~l~~d~ 356 (468)
+|+++|++..|.
T Consensus 232 gG~~~w~~~~d~ 243 (253)
T cd06545 232 GGVMIWELSQDA 243 (253)
T ss_pred CeEEEEeccCCC
Confidence 999999999886
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=8.7e-34 Score=258.93 Aligned_cols=172 Identities=28% Similarity=0.499 Sum_probs=142.5
Q ss_pred EEEEEcCCCCCCC---CCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCc
Q 012202 28 KVGYWDSGDGFPI---SDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYS 104 (468)
Q Consensus 28 v~gY~~~~~~~~~---~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~ 104 (468)
++|||..|..... ...+.+.||||+++|+.+++++......+.........++.+++++|++||+++|||+.. ..
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~--~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD--SS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC--CC
Confidence 5899999776554 788899999999999999998755432222333334455678887799999999999886 44
Q ss_pred cchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCC--chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEec
Q 012202 105 TYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSR--DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVA 182 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~--~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (468)
.+ .++.+++.|++|++++++++++|+|||||||||++.... ++.+|+.||++||++|++++ +.||+++|
T Consensus 79 ~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~--------~~ls~a~~ 149 (210)
T cd00598 79 PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAAN--------YLLTIAVP 149 (210)
T ss_pred Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccC--------cEEEEEec
Confidence 44 888999999999999999999999999999999988643 48999999999999998864 88999998
Q ss_pred cCcccccCCCChhHHhccccEEeeeccc
Q 012202 183 HSPLSTAAAYPVDSIRQYLNWVHVMTTG 210 (468)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
+.+......|+++++.+++|+|++|+||
T Consensus 150 ~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 150 ASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred CChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 7765544348999999999999999998
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=260.62 Aligned_cols=238 Identities=18% Similarity=0.280 Sum_probs=195.9
Q ss_pred CcEEEEEE--eC---CCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHH
Q 012202 88 SITTLLSI--GG---GNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAV 162 (468)
Q Consensus 88 ~~kvllsi--gG---~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l 162 (468)
+++.++.+ ++ .+. +.+..+.++.++..++++++++++.++++|+.||.||+|.... .|++.|..|++++|++|
T Consensus 160 ~i~~~~~iSN~~~~~~~f-~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l 237 (423)
T COG3858 160 KIKPVPGISNGTRPGANF-GGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDAL 237 (423)
T ss_pred ccceeEEEecCCcccccc-chHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHh
Confidence 46666554 33 222 2345689999999999999999999999999999999998764 99999999999999999
Q ss_pred HHHhhcCCCCceEEEEEEeccCccc-----ccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHH
Q 012202 163 DLEARNNSSQSQLILTAKVAHSPLS-----TAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEY 237 (468)
Q Consensus 163 ~~~~~~~~~~~~~~ls~a~~~~~~~-----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~ 237 (468)
++.+ +.+++|+++.... |...||+..+.+++|+|.||+||.|..| +.+|+.||.- +++.
T Consensus 238 ~~~G--------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~------~vr~ 301 (423)
T COG3858 238 HSGG--------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG------WVRK 301 (423)
T ss_pred ccCC--------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch------hHhh
Confidence 9988 8899999876532 3444899999999999999999999764 7799999986 7777
Q ss_pred HHHHHHHcCCCCCceEEecceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEE
Q 012202 238 GITEWIEEGLSADKLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYC 317 (468)
Q Consensus 238 ~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~ 317 (468)
.+++.+. .+|++||+||+|+||++|++..+... .. ...++.++..++....+ +++.||..++.||+
T Consensus 302 ~ieya~T-~iP~~Kv~mGip~YGYDW~~~y~~~g---~~--------~~a~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F 367 (423)
T COG3858 302 VIEYALT-VIPAEKVMMGIPLYGYDWTLPYDPLG---YL--------ARAISPDEAIDIANRYN--ATIQYDATSQSPFF 367 (423)
T ss_pred hhhhhhe-ecchHHeEEccccccccccCCCCCCc---ce--------eeecCcchhhhhhcccC--CccCcCccccCceE
Confidence 7777776 59999999999999999986543211 00 11245556556666677 89999999999987
Q ss_pred E----eC-CEEEEEcCHHHHHHHHHHhhhcCcccEEEEeeccCcc
Q 012202 318 S----IG-KIWFGFDDVEAVRVKVSYAKEKKLRGYYVWEVSYDHY 357 (468)
Q Consensus 318 ~----~~-~~~i~~~~~~s~~~k~~~~~~~~L~G~~~~~l~~d~~ 357 (468)
+ .+ .|++||+|.+|+..|.+++++.||.|++.|.++.++.
T Consensus 368 ~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p 412 (423)
T COG3858 368 YYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDP 412 (423)
T ss_pred EEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcch
Confidence 7 23 6899999999999999999999999999999998873
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=5.7e-30 Score=237.65 Aligned_cols=196 Identities=14% Similarity=0.205 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCC--------CCCCCCCCCCcEEEEEeEEeeCCCcEEecCCc--chH---HHHHHHHHHHhhCCCcEEEE
Q 012202 27 IKVGYWDSGDGF--------PISDVNFALFTHLMCGFADVNSTTYELSLSPS--DEE---QFSNFTDTVKIKNPSITTLL 93 (468)
Q Consensus 27 ~v~gY~~~~~~~--------~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~k~~~~~~kvll 93 (468)
++||||..|+.. ++..++..+||||+|+|+.++.+| .+...+. +.. .+..-++.+| ++++||++
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~--~~g~KVll 77 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQ--SSGVKVMG 77 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHH--hCCCEEEE
Confidence 589999986322 223456689999999999999976 5655443 111 2222223344 57999999
Q ss_pred EEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 012202 94 SIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQS 173 (468)
Q Consensus 94 sigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~ 173 (468)
|||||.. ..|+.++.+++.|++|++++++++++|+|||||||||+|. +..+|..|+++||+++++.
T Consensus 78 SiGG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~~-------- 143 (256)
T cd06546 78 MLGGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGPD-------- 143 (256)
T ss_pred EECCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCCC--------
Confidence 9999975 3488878899999999999999999999999999999985 3568999999999998643
Q ss_pred eEEEEEEeccCcc----cccCCCChhHHh----ccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHc
Q 012202 174 QLILTAKVAHSPL----STAAAYPVDSIR----QYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEE 245 (468)
Q Consensus 174 ~~~ls~a~~~~~~----~~~~~~~~~~l~----~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~ 245 (468)
+.||+|+++... .....+++.++. +++|++|+|.||.++.-. . ......|.+.
T Consensus 144 -~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~-----------------~-~~~~~~~~~~ 204 (256)
T cd06546 144 -FIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS-----------------S-PSDYDAIVAQ 204 (256)
T ss_pred -cEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc-----------------C-HHHHHHHHHc
Confidence 889998764311 122246777665 499999999999765410 0 1223456667
Q ss_pred CCCCCceEEecce
Q 012202 246 GLSADKLVLCLPF 258 (468)
Q Consensus 246 g~~~~Ki~lglp~ 258 (468)
++|++||++|+|+
T Consensus 205 ~~~~~Kv~iGlpa 217 (256)
T cd06546 205 GWDPERIVIGLLT 217 (256)
T ss_pred CCCcccEEEEEec
Confidence 9999999999986
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.97 E-value=2.4e-30 Score=238.41 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=144.4
Q ss_pred CCCCCCCCCCCC--CcEEEEEeE-EeeC----CCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchH
Q 012202 36 DGFPISDVNFAL--FTHLMCGFA-DVNS----TTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSS 108 (468)
Q Consensus 36 ~~~~~~~~~~~~--~thi~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~ 108 (468)
....++++|.+. ||||+|+|+ ..+. .++.+...+.+.......+..+|+++|++|||+|||||+...+..+..
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~ 90 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFD 90 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccC
Confidence 345788888888 999999999 3333 133444443333323334458999999999999999998722222333
Q ss_pred hhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccc
Q 012202 109 MSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLST 188 (468)
Q Consensus 109 ~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~ 188 (468)
..+....|++|+++++++|++|||||||||||+|. .++.+|+.|+++||.+|++++ +++.+++.+.....
T Consensus 91 ~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~--------~lt~a~vap~~~~~ 160 (253)
T cd06544 91 PSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG--------VIKVASIAPSEDAE 160 (253)
T ss_pred chhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC--------CeEEEEecCCcccc
Confidence 33444556777999999999999999999999985 578999999999999998864 23333332222221
Q ss_pred cCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEee
Q 012202 189 AAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAW 263 (468)
Q Consensus 189 ~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~ 263 (468)
..+.++.+.+++|+|++|+||+++.+. +...+ ...+.++.|. .++|++||++|+|+++..|
T Consensus 161 -~~~y~~~~~~~~d~id~~~~qfy~~~~---~~~~~---------~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 161 -QSHYLALYNAYGDYIDYVNYQFYNYGV---PTTVA---------KYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred -ccccHHHHHHhhCceeEEEhhhhCCCC---CCCHH---------HHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 234578889999999999999987642 11111 2334555565 4699999999999999877
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=9.1e-28 Score=230.59 Aligned_cols=211 Identities=24% Similarity=0.354 Sum_probs=147.9
Q ss_pred cEEEEEEcCCCCCCCC-----CCCCCCCcEEEEEeEEeeCCCcE-Ee------cCCcchHHHHHHHHHHHhhCCCcEEEE
Q 012202 26 LIKVGYWDSGDGFPIS-----DVNFALFTHLMCGFADVNSTTYE-LS------LSPSDEEQFSNFTDTVKIKNPSITTLL 93 (468)
Q Consensus 26 ~~v~gY~~~~~~~~~~-----~~~~~~~thi~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~k~~~~~~kvll 93 (468)
++++|||++|...... ....+.||||+++|+.+++++.. +. ........+...++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 5789999997654322 22347899999999999876532 22 1222344555666667765 899999
Q ss_pred EEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC----CchhhHHHHHHHHHHHHHHHhhcC
Q 012202 94 SIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS----RDKYNIGILFKEWRAAVDLEARNN 169 (468)
Q Consensus 94 sigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~----~~~~~~~~ll~~lr~~l~~~~~~~ 169 (468)
||||+.. + ..+.+++.|++|++++++++++|+|||||||||+|... ++..+|..||++||+++++.
T Consensus 79 SiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~---- 148 (312)
T cd02871 79 SIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPN---- 148 (312)
T ss_pred EEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCC----
Confidence 9999875 2 23678899999999999999999999999999998653 36789999999999998752
Q ss_pred CCCceEEEEEEeccCccc--------ccCCC--ChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 012202 170 SSQSQLILTAKVAHSPLS--------TAAAY--PVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGI 239 (468)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~--------~~~~~--~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~ 239 (468)
++||+|+.++... ....| .++++.+++|+||+|.||.++.+ ++...-+. .+......++
T Consensus 149 -----~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~-----~~~~~~~~-~~~~~~~~~~ 217 (312)
T cd02871 149 -----FILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG-----GCDGQSYS-QGTADFLVAL 217 (312)
T ss_pred -----eEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc-----cccccCCc-cchhHHHHHH
Confidence 9999997543211 01123 36778889999999999987642 11111111 1111233333
Q ss_pred HHHHHcC-----------CCCCceEEeccee
Q 012202 240 TEWIEEG-----------LSADKLVLCLPFY 259 (468)
Q Consensus 240 ~~~~~~g-----------~~~~Ki~lglp~y 259 (468)
..++..+ +|++||++|+|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 218 ADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 3444445 8999999999973
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.9e-26 Score=204.56 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=225.6
Q ss_pred cEEEEEEcCCC--CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEE--eCCCCC
Q 012202 26 LIKVGYWDSGD--GFPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSI--GGGNNP 101 (468)
Q Consensus 26 ~~v~gY~~~~~--~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsi--gG~~~~ 101 (468)
..+.||..+|+ +|++..+-.+++|||.+.|+.+...|..+.......-. ..+++.+|+++++++++.-+ .-|.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid-~gwiralRk~~~~l~ivPR~~fd~~~-- 155 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDID-PGWIRALRKSGKDLHIVPRFYFDEFT-- 155 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCC-hHHHHHHHHhCCCceeeceehhhhcc--
Confidence 45799999965 79999999999999999999998877444443322111 24667889999999988554 4444
Q ss_pred CCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC-CCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEE
Q 012202 102 NYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN-TSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAK 180 (468)
Q Consensus 102 ~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~-~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a 180 (468)
++.+..++.+++.|++..+.++++++++||||+.|+--..- +--+......|++.|-.+++++... .++++.
T Consensus 156 -~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq~l~------~iLvvP 228 (392)
T KOG2091|consen 156 -SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQELQ------AILVVP 228 (392)
T ss_pred -chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhheE------EEEEeC
Confidence 47788999999999999999999999999999999853211 1011134567889999999988755 555554
Q ss_pred eccCcccccCC----CChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEec
Q 012202 181 VAHSPLSTAAA----YPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCL 256 (468)
Q Consensus 181 ~~~~~~~~~~~----~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lgl 256 (468)
++..+...... -+++.|.+..|.+.+||||+.+. ..||++||+. +++.+++.+.-..--+.||.+||
T Consensus 229 p~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGl 299 (392)
T KOG2091|consen 229 PVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGL 299 (392)
T ss_pred CCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEee
Confidence 43222222221 25778889999999999999865 5799999998 89999888743333457999999
Q ss_pred ceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEE-E----eCCEEEEEcCHHH
Q 012202 257 PFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYC-S----IGKIWFGFDDVEA 331 (468)
Q Consensus 257 p~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~-~----~~~~~i~~~~~~s 331 (468)
.|||++|...+ + .+.++.++..++++... -...||+.++..++ | ++++.|.|+...|
T Consensus 300 NFYG~d~~~gd-------------g---~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~S 361 (392)
T KOG2091|consen 300 NFYGNDFNLGD-------------G---GEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTS 361 (392)
T ss_pred eccccccccCC-------------C---CCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHh
Confidence 99999996422 1 46789999999998888 78999999999865 4 3489999999999
Q ss_pred HHHHHHHhhhcCcccEEEEeeccC
Q 012202 332 VRVKVSYAKEKKLRGYYVWEVSYD 355 (468)
Q Consensus 332 ~~~k~~~~~~~~L~G~~~~~l~~d 355 (468)
+..+...++..|. |+++|++++-
T Consensus 362 l~~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 362 LELRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred HHHHHHHHHHhCC-ceEeeeccCc
Confidence 9999999999887 8999998864
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.89 E-value=1.1e-22 Score=190.95 Aligned_cols=196 Identities=17% Similarity=0.175 Sum_probs=139.9
Q ss_pred cEEEEEEcCCCC------CCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCC
Q 012202 26 LIKVGYWDSGDG------FPISDVNFALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGN 99 (468)
Q Consensus 26 ~~v~gY~~~~~~------~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~ 99 (468)
++.+|||..|.. ..+..+| +.+++|++....++.++... ...........++.++++ |+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 467899999875 3444554 57899988555444332110 111223344555556554 899999999988
Q ss_pred CCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC------CCchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 012202 100 NPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT------SRDKYNIGILFKEWRAAVDLEARNNSSQS 173 (468)
Q Consensus 100 ~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~------~~~~~~~~~ll~~lr~~l~~~~~~~~~~~ 173 (468)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.+..+|..|+++||+.+++.+
T Consensus 76 ~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~------- 145 (255)
T cd06542 76 L--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTD------- 145 (255)
T ss_pred C--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCC-------
Confidence 6 4444 3456788999999999999999999999999998864 2367899999999999997633
Q ss_pred eEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceE
Q 012202 174 QLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLV 253 (468)
Q Consensus 174 ~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~ 253 (468)
++|++++++..... +.+++.+++|||++|+||..+.- . .. + ......|+|++|++
T Consensus 146 -kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~--~--~~----~------------~~~~~~g~~~~k~i 200 (255)
T cd06542 146 -KLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSS--T--QR----N------------WNTNSPKIPPEKMV 200 (255)
T ss_pred -cEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCcc--C--Cc----c------------cccccCCCCHHHce
Confidence 78999877543221 67899999999999999864321 1 00 0 11124689999999
Q ss_pred EecceeEE
Q 012202 254 LCLPFYGF 261 (468)
Q Consensus 254 lglp~yG~ 261 (468)
+|+++++.
T Consensus 201 ~~~~~~~~ 208 (255)
T cd06542 201 YTESFEEE 208 (255)
T ss_pred eeeeeecc
Confidence 99999864
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.85 E-value=2.6e-20 Score=174.23 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=134.9
Q ss_pred EEEEEcCCC--CCCCCCCCCCCCcEEEEEeEEeeCCCcE--EecCCcc-------hHHHHHHHHHHHhhCCCcEEEEEEe
Q 012202 28 KVGYWDSGD--GFPISDVNFALFTHLMCGFADVNSTTYE--LSLSPSD-------EEQFSNFTDTVKIKNPSITTLLSIG 96 (468)
Q Consensus 28 v~gY~~~~~--~~~~~~~~~~~~thi~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~k~~~~~~kvllsig 96 (468)
++.||-... ....+.++...++.|+++|+..-++++. +.+.+.. -+.+...++.++++ ++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEcc
Confidence 577886632 2222334556799999999987765322 2222221 13455566666654 899999999
Q ss_pred CCCCCCCccchHhhcChhhHHHHHHHHHHHH------------HHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHH
Q 012202 97 GGNNPNYSTYSSMSASSSSRKSFIDSSIKIA------------RLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 97 G~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l------------~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~ 164 (468)
||.. +..+ .+++.|++|+++|.++. .+++|||||||||++.. .+|..|+++||+.+++
T Consensus 81 G~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~ 150 (280)
T cd02877 81 GAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFAS 150 (280)
T ss_pred CCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhc
Confidence 9986 3333 67899999999998765 25779999999999864 6899999999999976
Q ss_pred Hh-hcCCCCceEEEEEEeccCcccccCCCChhHHh-ccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 012202 165 EA-RNNSSQSQLILTAKVAHSPLSTAAAYPVDSIR-QYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEW 242 (468)
Q Consensus 165 ~~-~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~-~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~ 242 (468)
.. +. ++||+|+++... ..+....+. .++|+|++|.||..+- ....+..+ .....++.|
T Consensus 151 ~~~~~------~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~c--~~~~~~~~---------~~~~~~~~w 210 (280)
T cd02877 151 DPSKK------YYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPCC--SYASGNAS---------GFNFNWDTW 210 (280)
T ss_pred ccCCc------eEEEeccccCCc---chhHHHHHccCccCEEEEEEecCccc--cccccccc---------hhhhHHHHH
Confidence 42 23 999999776321 123344555 4999999999996432 00011111 334566777
Q ss_pred HHcCCCC---CceEEeccee
Q 012202 243 IEEGLSA---DKLVLCLPFY 259 (468)
Q Consensus 243 ~~~g~~~---~Ki~lglp~y 259 (468)
... ++. .||+||||..
T Consensus 211 ~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 211 TSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred HHh-cccCCCceEEEecccC
Confidence 765 565 8999999874
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.81 E-value=3.4e-19 Score=167.96 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=113.5
Q ss_pred CCCCcEEEEEeEEeeCCCcEEecCCc---c-hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHH
Q 012202 45 FALFTHLMCGFADVNSTTYELSLSPS---D-EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFI 120 (468)
Q Consensus 45 ~~~~thi~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi 120 (468)
...|+||+++|+....++ ....... + ...+...++.+|++ ++||++|+|||.. . . +..+...|++|+
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~-~---~~~~~~~~~~~~ 93 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--T-P---LATSCTSADQLA 93 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--C-c---cccCcccHHHHH
Confidence 358999999999887543 3333221 1 33444555678877 6899999999986 2 2 333778999999
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCCch---hhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCccccc-CCCChhH
Q 012202 121 DSSIKIARLYGFQGLDLSWNSANTSRDK---YNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTA-AAYPVDS 196 (468)
Q Consensus 121 ~~l~~~l~~~~~DGvdiD~E~~~~~~~~---~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~ 196 (468)
+++.+++++|+|||||||||++.. .++ +++..+|++|+++++. +.|++++|..|.... .++++.+
T Consensus 94 ~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p~----------l~vs~Tlp~~p~gl~~~g~~~l~ 162 (294)
T cd06543 94 AAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYPD----------LKISFTLPVLPTGLTPDGLNVLE 162 (294)
T ss_pred HHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCCC----------cEEEEecCCCCCCCChhHHHHHH
Confidence 999999999999999999999864 443 7788888888877732 778988886655332 3456777
Q ss_pred Hhc----cccEEeeecccccCC
Q 012202 197 IRQ----YLNWVHVMTTGYSKP 214 (468)
Q Consensus 197 l~~----~~D~v~lm~yd~~~~ 214 (468)
.+. .+|+||||+|||++.
T Consensus 163 ~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 163 AAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHcCCCcceeeeeeecCCCC
Confidence 777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.4e-17 Score=144.04 Aligned_cols=219 Identities=17% Similarity=0.294 Sum_probs=142.0
Q ss_pred CcccCCcEEEEEEcCCCCC--------CCCCCCC----CCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCC
Q 012202 20 PARAQTLIKVGYWDSGDGF--------PISDVNF----ALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNP 87 (468)
Q Consensus 20 ~~~~~~~~v~gY~~~~~~~--------~~~~~~~----~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 87 (468)
....+.++.+|||++|..- ...++.+ ..++.+..+|+.-..+=-+..+-...+..|+.-+..|.++
T Consensus 20 m~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae-- 97 (332)
T COG3469 20 MPDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE-- 97 (332)
T ss_pred ccccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--
Confidence 4455667999999995421 1112211 3466777777765443222333333556666666666655
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC--CCchhhHHHHHHHHHHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT--SRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~--~~~~~~~~~ll~~lr~~l~~~ 165 (468)
|.-|+||+||... .+-.+....++|+++|++++++|||||+|||.|+... .+......+.+|.+|+..+..
T Consensus 98 GkavllsLGGAdg-------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~ 170 (332)
T COG3469 98 GKAVLLSLGGADG-------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQ 170 (332)
T ss_pred CcEEEEEccCccc-------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhc
Confidence 7889999999765 2223445578999999999999999999999997542 133346789999999999988
Q ss_pred hhcCCCCceEEEEEEeccCcccccCCC--ChhHHhccccEEeeecccccCC--CCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 012202 166 ARNNSSQSQLILTAKVAHSPLSTAAAY--PVDSIRQYLNWVHVMTTGYSKP--TWTNFTGAHAALYDPNSVSNTEYGITE 241 (468)
Q Consensus 166 ~~~~~~~~~~~ls~a~~~~~~~~~~~~--~~~~l~~~~D~v~lm~yd~~~~--~~~~~~~~~apl~~~~~~~~~~~~~~~ 241 (468)
++. +.||.|+..+.......| -+.++.++.|+|+.+-|+..|. |.+....+.++.. .-+.+..-+
T Consensus 171 Gk~------f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~n-----d~~kesfly 239 (332)
T COG3469 171 GKN------FFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNN-----DMVKESFLY 239 (332)
T ss_pred CCc------eEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCcccccccccc-----HHHHHhHHH
Confidence 776 999998764433222233 4678999999999999998765 3322222222111 011111111
Q ss_pred HHH----------cCCCCCceEEecce
Q 012202 242 WIE----------EGLSADKLVLCLPF 258 (468)
Q Consensus 242 ~~~----------~g~~~~Ki~lglp~ 258 (468)
++. ..+|.+|+++|||.
T Consensus 240 ~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 240 YLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HhhhhhhcCcccceecccceeEEecCC
Confidence 111 23899999999985
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.34 E-value=3e-11 Score=111.97 Aligned_cols=220 Identities=17% Similarity=0.138 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCCCcccCCcEEEEEEcCCC----CCCCCCCCCCCCcEEEEEeEEeeCCCcEEecC--C----cc-----
Q 012202 7 ILVLHIFIFSESLPARAQTLIKVGYWDSGD----GFPISDVNFALFTHLMCGFADVNSTTYELSLS--P----SD----- 71 (468)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~v~gY~~~~~----~~~~~~~~~~~~thi~~~~~~~~~~~~~~~~~--~----~~----- 71 (468)
++++.++.+.+.....+.+.-+.+||.... .-....+....++.++++|+.--+.++...+. + ..
T Consensus 8 llF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~ 87 (568)
T KOG4701|consen 8 LLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLK 87 (568)
T ss_pred HHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCcccccccc
Confidence 344444444444466667778899997631 12223344567889999988644433333322 1 11
Q ss_pred -hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHH----------cCCCeeeeecc
Q 012202 72 -EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARL----------YGFQGLDLSWN 140 (468)
Q Consensus 72 -~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~----------~~~DGvdiD~E 140 (468)
-..+...++..+.+ |+||||++||..+ ...+.+.+..+.|++.+-+..-. --+||+|||+|
T Consensus 88 ~CTqi~~di~~CQS~--GiKVlLSLGG~~G------nYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE 159 (568)
T KOG4701|consen 88 KCTQIETDIQVCQSN--GIKVLLSLGGYNG------NYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIE 159 (568)
T ss_pred ccchhhhHHHHHHhc--CeEEEEeccCccc------ceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeee
Confidence 12234445555554 9999999999876 23456777778888888665432 22899999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHH-hccccEEeeecccccCCCCCCC
Q 012202 141 SANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSI-RQYLNWVHVMTTGYSKPTWTNF 219 (468)
Q Consensus 141 ~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l-~~~~D~v~lm~yd~~~~~~~~~ 219 (468)
.. ....|.+|-+.||..|...+++ +.|+.|+.++-.....+ +.| .+-.||+.|+-|+-..
T Consensus 160 ~g----~~~~ysaLA~~L~~~Fa~~~r~------yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~~------ 220 (568)
T KOG4701|consen 160 KG----TNTAYSALAKRLLEIFASDPRR------YYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNST------ 220 (568)
T ss_pred cC----CcchHHHHHHHHHHHHccCCce------EEeccCCCCCCCchhhh---hhhhccccceEEEEeecCCC------
Confidence 53 3467999999999999987766 99999987753322211 122 3568999999997311
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCc---eEEeccee
Q 012202 220 TGAHAALYDPNSVSNTEYGITEWIEEGLSADK---LVLCLPFY 259 (468)
Q Consensus 220 ~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~K---i~lglp~y 259 (468)
+. +..++..+.-+++..|... +.++| +.||||..
T Consensus 221 ----CS-~SsG~~Q~~fDsW~~ya~~-~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 221 ----CS-GSSGSRQSTFDAWVEYAED-SAYNKNTSLFLGLPGH 257 (568)
T ss_pred ----cc-cccCcccccHHHHHHHHhh-hcccccceEEeeccCC
Confidence 11 1111111222333444433 66777 99999853
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.64 E-value=3.8e-07 Score=88.05 Aligned_cols=157 Identities=9% Similarity=0.054 Sum_probs=105.9
Q ss_pred HHHHHHhhCCCcEEEEEEeC-CCCCCCccchHhhcC-hhhHHHHHHHHHHHHHHcCCCeeeeeccCCC-CCCchhhHHHH
Q 012202 78 FTDTVKIKNPSITTLLSIGG-GNNPNYSTYSSMSAS-SSSRKSFIDSSIKIARLYGFQGLDLSWNSAN-TSRDKYNIGIL 154 (468)
Q Consensus 78 ~~~~~k~~~~~~kvllsigG-~~~~~~~~~~~~~~~-~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~-~~~~~~~~~~l 154 (468)
.+..+|++ |+||+-.|-= +.. ..+....++.+ ++.+..+++.|+++++.|||||+.||+|... .+++++.+.+|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 44555655 9999977631 211 23567788888 9999999999999999999999999999877 56789999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEE-Eec--cCcccccCC---CChhHHhccccEEeeecccccCCCCCCCCCCCCCCCC
Q 012202 155 FKEWRAAVDLEARNNSSQSQLILTA-KVA--HSPLSTAAA---YPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYD 228 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~-a~~--~~~~~~~~~---~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~ 228 (468)
+++|+++++++.+. ..|.- ..- .+...+... .+. ..-+.+|-+ +..|. |...
T Consensus 128 ~~~L~~~~~~~~~~------~~v~WYDs~t~~G~l~wQn~Ln~~N~-~ff~~~D~~-FlNY~----W~~~---------- 185 (339)
T cd06547 128 LRYLKAKLHENVPG------SLVIWYDSMTEDGKLSWQNELNSKNK-PFFDVCDGI-FLNYW----WTEE---------- 185 (339)
T ss_pred HHHHHHHHhhcCCC------cEEEEEecCCCCCccchhhhhhHHHH-HHHhhhcce-eEecC----CCcc----------
Confidence 99999999986533 33322 111 011011111 111 222456644 22342 4211
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCceEEecceeEEeee
Q 012202 229 PNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWT 264 (468)
Q Consensus 229 ~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~ 264 (468)
..+.+++.....|..+.+|.+|+=..|+...
T Consensus 186 -----~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 -----SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred -----hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 4556666777789999999999999988763
No 27
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.17 E-value=9.1e-07 Score=86.94 Aligned_cols=37 Identities=41% Similarity=0.739 Sum_probs=34.4
Q ss_pred CccccCHHHHHHHhcCCCcCCccCCCCCccceeeecC
Q 012202 432 DLREYSLADIEAATDRLSIENKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 432 ~~~~~s~~~l~~aT~~f~~~~~iG~GgfG~VYkg~L~ 468 (468)
..+.|+|++|++||+||+++|+||+||||+||||.|+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~ 97 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS 97 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC
Confidence 4567999999999999999999999999999999874
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.10 E-value=8.4e-06 Score=77.93 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=92.9
Q ss_pred HHHHHHhhCCCcEEEEEEe-CCCCCCCccchHhhc-ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-CchhhHHHH
Q 012202 78 FTDTVKIKNPSITTLLSIG-GGNNPNYSTYSSMSA-SSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS-RDKYNIGIL 154 (468)
Q Consensus 78 ~~~~~k~~~~~~kvllsig-G~~~~~~~~~~~~~~-~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~-~~~~~~~~l 154 (468)
.+..+|++ |+||+-.|- .|.. .......++. ++.....+++.|+++++.|||||.-|++|.+... .+...+..|
T Consensus 47 widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 45556655 999985542 1111 1356778887 8888899999999999999999999999987664 688899999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEec--c-CcccccCCCC--hhHHhccccEEeeecccccCCCCCCCCCCCCCCCCC
Q 012202 155 FKEWRAAVDLEARNNSSQSQLILTAKVA--H-SPLSTAAAYP--VDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDP 229 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~--~-~~~~~~~~~~--~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~ 229 (468)
+++|++.+++ .+. ..|..-=. . +...+..... -....+.+|-|.+ .|. |..
T Consensus 124 ~~~l~~~~~~-~~~------~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY~----W~~------------ 179 (311)
T PF03644_consen 124 LKYLRKEAHE-NPG------SEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NYN----WNP------------ 179 (311)
T ss_dssp HHHHHHHHHH-T-T-------EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SH------------
T ss_pred HHHHHHHhhc-CCC------cEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ecC----CCc------------
Confidence 9999999998 433 44433211 0 1111111111 0112344554422 332 321
Q ss_pred CCCCcHHHHHHHHHHcCCCCCceEEecceeEEe
Q 012202 230 NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFA 262 (468)
Q Consensus 230 ~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~ 262 (468)
..++.+++...+.+.+|.+|.+|+=..|+.
T Consensus 180 ---~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 180 ---DSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ---HHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ---ccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 157788888888999999999999998887
No 29
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.08 E-value=3.6e-05 Score=73.96 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCC-----------------------CCCc-------hhhHHHHHHHHHH
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLS-WNSAN-----------------------TSRD-------KYNIGILFKEWRA 160 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD-~E~~~-----------------------~~~~-------~~~~~~ll~~lr~ 160 (468)
.|+.|+-.++-+.+++++|.+|||.|| +-+|. .+.| +++...||++++.
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 577888888888899999999999999 44432 1233 6778899999999
Q ss_pred HHHHHhhcCCCCceEEEEEEeccCcc--cccCCCChhHH--hccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHH
Q 012202 161 AVDLEARNNSSQSQLILTAKVAHSPL--STAAAYPVDSI--RQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTE 236 (468)
Q Consensus 161 ~l~~~~~~~~~~~~~~ls~a~~~~~~--~~~~~~~~~~l--~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~ 236 (468)
++++.++. ..+++++.+... .....-|.... ..++|+|..|.|-.. .....+ ..+
T Consensus 215 ~ik~~kP~------v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~~~ 273 (311)
T PF02638_consen 215 AIKAIKPW------VKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------PYE 273 (311)
T ss_pred HHHHhCCC------CeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------HHH
Confidence 99998765 788887643221 11111244433 378999999999431 111112 456
Q ss_pred HHHHHHHHcCCC-CCceEEecceeEE
Q 012202 237 YGITEWIEEGLS-ADKLVLCLPFYGF 261 (468)
Q Consensus 237 ~~~~~~~~~g~~-~~Ki~lglp~yG~ 261 (468)
..+..|.+.-.+ .-+|.+|+.+|-.
T Consensus 274 ~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 274 QLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHhhcCCCceEEEccCcCCC
Confidence 677777765444 3499999998754
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.60 E-value=0.00071 Score=58.16 Aligned_cols=114 Identities=8% Similarity=0.094 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHHHHHH-cCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCC
Q 012202 113 SSSRKSFIDSSIKIARL-YGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191 (468)
Q Consensus 113 ~~~r~~fi~~l~~~l~~-~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
++..++..+.+.++-.. +...||.|||..+. .....|..|+++||..|+.. +.||++.=. .+...
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~~---------~~LSIT~L~---dW~~~ 88 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPPD---------YRLSITALP---DWLSS 88 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCCC---------ceEeeEEeh---hhhcC
Confidence 44445555555555433 35799999998654 57789999999999999985 667776432 11112
Q ss_pred CC-hhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeE
Q 012202 192 YP-VDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYG 260 (468)
Q Consensus 192 ~~-~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG 260 (468)
-+ +..+...+|.+.+|+|. |.. ..+ ....-+..+... . --.-+|+|.||
T Consensus 89 ~~~L~~L~~~VDE~VlQ~yq--Gl~-------d~~--------~~~~yl~~l~~l--~-~PFriaLp~yG 138 (181)
T PF11340_consen 89 PDWLNALPGVVDELVLQVYQ--GLF-------DPP--------NYARYLPRLARL--T-LPFRIALPQYG 138 (181)
T ss_pred chhhhhHhhcCCeeEEEeec--CCC-------CHH--------HHHHHHHHHhcC--C-CCeEEecCcCC
Confidence 23 67888999999999992 221 111 222333344333 3 45789999999
No 31
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.33 E-value=0.028 Score=53.69 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCeeeeec-cCCCC----------C--C--chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 012202 117 KSFIDSSIKIARLYGFQGLDLSW-NSANT----------S--R--DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKV 181 (468)
Q Consensus 117 ~~fi~~l~~~l~~~~~DGvdiD~-E~~~~----------~--~--~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (468)
.++.-+|++-+.+.|||.|.||+ .+|.. . . ..+....||+..|+++++.+ ..||+.+
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--------v~vSaDV 194 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG--------VPVSADV 194 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC--------CCEEEEe
Confidence 34556688888899999999999 46651 0 1 23668899999999999876 5688888
Q ss_pred ccCcccc----cCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCC
Q 012202 182 AHSPLST----AAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALY 227 (468)
Q Consensus 182 ~~~~~~~----~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~ 227 (468)
.+..... ..+=+++.|++++|+|.-|.|-=| |..+..|...|-.
T Consensus 195 fG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~~ 242 (316)
T PF13200_consen 195 FGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPDL 242 (316)
T ss_pred cccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCccc
Confidence 7543322 233589999999999999999644 5555555555543
No 32
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.89 E-value=0.0021 Score=72.38 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=23.5
Q ss_pred ccCHHHHHHHhcCCCcCCccCCCCCccceeeec
Q 012202 435 EYSLADIEAATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 435 ~~s~~~l~~aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
.++++++.. .|.+.++||+|+||.||||..
T Consensus 682 ~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~ 711 (968)
T PLN00113 682 SITINDILS---SLKEENVISRGKKGASYKGKS 711 (968)
T ss_pred hhhHHHHHh---hCCcccEEccCCCeeEEEEEE
Confidence 355566544 478889999999999999974
No 33
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=96.38 E-value=0.11 Score=50.38 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=69.8
Q ss_pred HHHhhCCCcEEEEE-EeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHH
Q 012202 81 TVKIKNPSITTLLS-IGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWR 159 (468)
Q Consensus 81 ~~k~~~~~~kvlls-igG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr 159 (468)
.++.+ |++|+-. |--|.. ..+.-..++.+.++.+..++.++++.+-.||||=-|+.|...+.....++..|++.|.
T Consensus 119 ~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt 195 (526)
T KOG2331|consen 119 TAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLT 195 (526)
T ss_pred hhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHH
Confidence 45554 8999965 455654 4567788999999999999999999999999999999998776667789999999999
Q ss_pred HHHHHHh
Q 012202 160 AAVDLEA 166 (468)
Q Consensus 160 ~~l~~~~ 166 (468)
+.++...
T Consensus 196 ~~~~~~~ 202 (526)
T KOG2331|consen 196 KVLHSSV 202 (526)
T ss_pred HHHhhcC
Confidence 9999874
No 34
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=96.30 E-value=0.0098 Score=58.51 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=15.5
Q ss_pred CCccCCCCCccceeeecC
Q 012202 451 ENKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L~ 468 (468)
..+||+|+||.||||.|.
T Consensus 215 ~eli~~Grfg~V~KaqL~ 232 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLD 232 (534)
T ss_pred HHHhhcCccceeehhhcc
Confidence 348999999999999873
No 35
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=94.50 E-value=1.9 Score=40.26 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=107.3
Q ss_pred CCcEEEE-EeEEeeCCCcE--EecCCcc----hHHHHHHHHHHHhhCCCcEEEEEE--eCCCCCCCc-------------
Q 012202 47 LFTHLMC-GFADVNSTTYE--LSLSPSD----EEQFSNFTDTVKIKNPSITTLLSI--GGGNNPNYS------------- 104 (468)
Q Consensus 47 ~~thi~~-~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~k~~~~~~kvllsi--gG~~~~~~~------------- 104 (468)
.+++|++ +|...+++|.. +.+++.. .+.|....-.++.+. ++||..-+ -+|..+...
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4677777 67777777622 3333332 233333332455443 78887332 222221111
Q ss_pred cchHhhc-ChhhHHHHHHHHHHHHHHc-CCCeeeee-------ccCCCCC------CchhhHHHHHHHHHHHHHHHhhcC
Q 012202 105 TYSSMSA-SSSSRKSFIDSSIKIARLY-GFQGLDLS-------WNSANTS------RDKYNIGILFKEWRAAVDLEARNN 169 (468)
Q Consensus 105 ~~~~~~~-~~~~r~~fi~~l~~~l~~~-~~DGvdiD-------~E~~~~~------~~~~~~~~ll~~lr~~l~~~~~~~ 169 (468)
...++.- +++.| +.|.+|-+=|..| .||||=|. +|.+... ...+.+..|-.+|++..+...+.
T Consensus 109 ~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~- 186 (294)
T PF14883_consen 109 GYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRPD- 186 (294)
T ss_pred CceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 1111111 44444 5688888888888 89999883 3421110 12246788999999999886533
Q ss_pred CCCceEEEEEEeccCcccccC-----CCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 012202 170 SSQSQLILTAKVAHSPLSTAA-----AYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIE 244 (468)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~ 244 (468)
+...--+.+.+-.... .=++.+..+.-||.-+|+.-+... ... | ..+....++....
T Consensus 187 -----lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~~---~------~~WL~~Lv~~v~~ 248 (294)
T PF14883_consen 187 -----LKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AED---P------EQWLAQLVDAVAA 248 (294)
T ss_pred -----chhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----ccC---H------HHHHHHHHHHHHh
Confidence 2211112211111110 126777777789999988765432 111 1 2266666677766
Q ss_pred cCCCCCceEEecceeEEeee
Q 012202 245 EGLSADKLVLCLPFYGFAWT 264 (468)
Q Consensus 245 ~g~~~~Ki~lglp~yG~~~~ 264 (468)
...+.+|+|+-|-+ ++|+
T Consensus 249 ~p~~l~KtvFELQa--~dwr 266 (294)
T PF14883_consen 249 RPGGLDKTVFELQA--VDWR 266 (294)
T ss_pred cCCcccceEEEEec--cCCc
Confidence 66667999999865 5565
No 36
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=94.12 E-value=0.019 Score=60.40 Aligned_cols=17 Identities=41% Similarity=0.843 Sum_probs=15.1
Q ss_pred cCCccCCCCCccceeee
Q 012202 450 IENKLGEGGYGPVYKVM 466 (468)
Q Consensus 450 ~~~~iG~GgfG~VYkg~ 466 (468)
...+||+|.||+||||.
T Consensus 700 k~kvLGsgAfGtV~kGi 716 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGI 716 (1177)
T ss_pred hhceeccccceeEEeee
Confidence 36699999999999996
No 37
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=92.18 E-value=0.91 Score=43.51 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeec----cCCCC-----CCchhhHHHHHHHHHHHHHHHhhc
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLSW----NSANT-----SRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD~----E~~~~-----~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
+++.|+-+.+. ++.+.+.||||+.+|. ++... +...+...+++++|.+..++..+.
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~ 206 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQ 206 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 45666666655 6677788999999995 21111 233467889999998888887654
No 38
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.50 E-value=0.079 Score=44.09 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=17.4
Q ss_pred ccceeeeehhHHHHHHHHHHHHHHHHHHhhc
Q 012202 375 KRLLWAIVLPITAACILLIGFLLYYFCWMKT 405 (468)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 405 (468)
+.+++.++++++++++++++++++++++|++
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecc
Confidence 3566677777777666554444444443333
No 39
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=90.06 E-value=0.11 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=21.0
Q ss_pred HhcCCCcCCccCCCCCccceeeec
Q 012202 444 ATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
.+++|...++||+|+||+||||.+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 367899999999999999999963
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.89 E-value=0.77 Score=45.49 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeeeeecc--CCCC-------------------CC--------chhhHHHHHHHHHHHHH
Q 012202 113 SSSRKSFIDSSIKIARLYGFQGLDLSWN--SANT-------------------SR--------DKYNIGILFKEWRAAVD 163 (468)
Q Consensus 113 ~~~r~~fi~~l~~~l~~~~~DGvdiD~E--~~~~-------------------~~--------~~~~~~~ll~~lr~~l~ 163 (468)
++.|+=..+.+++.+++|..|||.||-- ++.. +. .+++..+|++++...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555667788999999999999953 1210 11 14578899999999999
Q ss_pred HHhhcCCCCceEEEEEEe-ccCcc-cccCCC---ChhHH--hccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHH
Q 012202 164 LEARNNSSQSQLILTAKV-AHSPL-STAAAY---PVDSI--RQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTE 236 (468)
Q Consensus 164 ~~~~~~~~~~~~~ls~a~-~~~~~-~~~~~~---~~~~l--~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~ 236 (468)
+.++. ..+++++ +.... .....+ |.... ..++|++..|.|=-+. ...+ ..+
T Consensus 261 avKp~------v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~-------~~~~---------~~~ 318 (418)
T COG1649 261 AVKPN------VKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRTLS-------TFVA---------EYD 318 (418)
T ss_pred hhCCC------eEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcccc-------cchh---------hhh
Confidence 98766 8888876 31111 011111 22111 5779999999993221 1222 122
Q ss_pred HHHHHHHHcCCC-CCceEEecceeEE
Q 012202 237 YGITEWIEEGLS-ADKLVLCLPFYGF 261 (468)
Q Consensus 237 ~~~~~~~~~g~~-~~Ki~lglp~yG~ 261 (468)
.....|.+.-+| +-.|..|+.+|..
T Consensus 319 ~~~~~wa~~~~~~~i~i~~G~~~~~v 344 (418)
T COG1649 319 TLAKWWANTVIPTRIGIYIGLAAYKV 344 (418)
T ss_pred hHHHHhhhhhcccceeeecchhhccC
Confidence 333455544333 3477778777664
No 41
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.88 E-value=4 Score=38.87 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC------
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS------ 145 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~------ 145 (468)
.+.+...+...++..++..++++|+|... +.++ .+++.+.++|+|+|+|++--|...
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~----------------~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~ 144 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSK----------------EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLG 144 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCH----------------HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccc
Confidence 34444444334433257889999998431 2222 345666778999999999765432
Q ss_pred CchhhHHHHHHHHHHHH
Q 012202 146 RDKYNIGILFKEWRAAV 162 (468)
Q Consensus 146 ~~~~~~~~ll~~lr~~l 162 (468)
.+.+...++++++|+..
T Consensus 145 ~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 145 QDPEAVANLLKAVKAAV 161 (289)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 13344556677777655
No 42
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=88.77 E-value=0.16 Score=53.36 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=23.1
Q ss_pred ccCHHHHHHHhcCCC---------cCCccCCCCCccceeeecC
Q 012202 435 EYSLADIEAATDRLS---------IENKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 435 ~~s~~~l~~aT~~f~---------~~~~iG~GgfG~VYkg~L~ 468 (468)
.++|+|=-+|...|. -+.+||.|-||-||+|.|+
T Consensus 609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk 651 (996)
T KOG0196|consen 609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLK 651 (996)
T ss_pred CccccCccHHHHHhhhhcChhheEEEEEEecccccceeccccc
Confidence 356665444433332 2458999999999999874
No 43
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=2 Score=39.96 Aligned_cols=84 Identities=11% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCeeeeecc-CCCCC---------------CchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 012202 118 SFIDSSIKIARLYGFQGLDLSWN-SANTS---------------RDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKV 181 (468)
Q Consensus 118 ~fi~~l~~~l~~~~~DGvdiD~E-~~~~~---------------~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (468)
++--+|++-+.+.|||-|.+|+- +|.+. +..+.+..||.--|+++.. -+|+.+
T Consensus 196 eYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~v-----------pIS~DI 264 (400)
T COG1306 196 EYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEV-----------PISADI 264 (400)
T ss_pred hhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhccc-----------ceEEEe
Confidence 34457888999999999999994 66531 1223456666666666653 366766
Q ss_pred ccC----cccccCCCChhHHhccccEEeeeccccc
Q 012202 182 AHS----PLSTAAAYPVDSIRQYLNWVHVMTTGYS 212 (468)
Q Consensus 182 ~~~----~~~~~~~~~~~~l~~~~D~v~lm~yd~~ 212 (468)
-.. +.....+-+++.++.|||.|.-|.|--|
T Consensus 265 YG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 265 YGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred ecccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 522 1122223578899999999999999655
No 44
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.83 E-value=0.57 Score=37.94 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=13.4
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHh
Q 012202 377 LLWAIVLPITAACILLIGFLLYYFCWM 403 (468)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~ 403 (468)
.++.|+++++++++++++++.++++|+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566665555554444443333
No 45
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.71 E-value=5.8 Score=43.78 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-------eCCCCCCC-------ccch----------------HhhcChhhHHHHHHH
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSI-------GGGNNPNY-------STYS----------------SMSASSSSRKSFIDS 122 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-------gG~~~~~~-------~~~~----------------~~~~~~~~r~~fi~~ 122 (468)
..|+.+++.++++ |++|+|=+ +|... .+ ..|. ....++.-|+-++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~-~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPND-RSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccC-cccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHH
Confidence 4678888888876 89999865 22211 00 0000 112346677888999
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q 012202 123 SIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 123 l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
+.-|+++|++||.-||.-.-. -..++++++.++++..+
T Consensus 481 l~~W~~ey~VDGFRfDlm~~~-------~~~f~~~~~~~l~~i~p 518 (898)
T TIGR02103 481 LVVWAKDYKVDGFRFDLMGHH-------PKAQMLAAREAIKALTP 518 (898)
T ss_pred HHHHHHHcCCCEEEEechhhC-------CHHHHHHHHHHHHHhCC
Confidence 999999999999999975322 25577888888877643
No 46
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.80 E-value=7.5 Score=41.32 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-----eCCCC-C--C--Cccc---------h--------HhhcChhhHHHHHHHHHH
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSI-----GGGNN-P--N--YSTY---------S--------SMSASSSSRKSFIDSSIK 125 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-----gG~~~-~--~--~~~~---------~--------~~~~~~~~r~~fi~~l~~ 125 (468)
..++.+++.+|++ |++|+|=+ ++... + . ...| . -...++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 6789999888887 89999864 11000 0 0 0000 0 012356778888999999
Q ss_pred HHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q 012202 126 IARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 126 ~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
|++++++||.-||.-... + ..|+++++.++++..+
T Consensus 307 W~~e~~iDGfR~D~~~~~---~----~~~~~~~~~~~~~~~p 341 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIH---D----IETMNEIRKALNKIDP 341 (605)
T ss_pred HHHHcCCCEEEEechhcC---C----HHHHHHHHHHHHhhCC
Confidence 999999999999964211 1 3478888888877643
No 47
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=84.91 E-value=20 Score=35.29 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=44.3
Q ss_pred CcEEEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEEe--CCCCCC------Cc-------cch
Q 012202 48 FTHLMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSIG--GGNNPN------YS-------TYS 107 (468)
Q Consensus 48 ~thi~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig--G~~~~~------~~-------~~~ 107 (468)
.--|+.....+++++.. +.+ .+..-+.++.++..+|+. +.|+++-+. |..... +. ...
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p 124 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTP 124 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCC
Confidence 34455555556554311 111 222446667777777766 788887762 221100 00 000
Q ss_pred HhhcC---hhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012202 108 SMSAS---SSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 108 ~~~~~---~~~r~~fi~~l~~~l~~~~~DGvdiD~ 139 (468)
..++. .+-.+.|++... .+++-|||||+|.-
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~-~a~~aGfDgVeih~ 158 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAA-LAREAGYDGVEIMG 158 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEec
Confidence 11111 123345555443 45557999999976
No 48
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.67 E-value=6.8 Score=40.97 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeC-CCCCCC-------ccch----------HhhcCh---hhHHHHHHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGG-GNNPNY-------STYS----------SMSASS---SSRKSFIDSSIKIARL 129 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG-~~~~~~-------~~~~----------~~~~~~---~~r~~fi~~l~~~l~~ 129 (468)
....++.+++.++++ |++|+|-+=- ...++. ..|. --..++ ..|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 567889999988887 8999987511 110000 0010 012234 7888899999999999
Q ss_pred cCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 130 YGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 130 ~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
|++||.-||--.... + ..-..|++++++.+++..
T Consensus 236 ~~iDGfR~D~~~~~~--~-~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 236 YHFDGLRLDAVHAIA--D-TSAKHILEELAREVHELA 269 (542)
T ss_pred hCCcEEEEeCHHHhc--c-ccHHHHHHHHHHHHHHHC
Confidence 999999999532111 1 112579999999998764
No 49
>PRK12313 glycogen branching enzyme; Provisional
Probab=84.54 E-value=11 Score=40.48 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeC-CCCCC---------C-------------ccch---HhhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGG-GNNPN---------Y-------------STYS---SMSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG-~~~~~---------~-------------~~~~---~~~~~~~~r~~fi~~l~ 124 (468)
+...++.+++.++++ |++|+|-+=- ...++ + ..|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 567899999988887 8999986410 00000 0 0111 11236788999999999
Q ss_pred HHHHHcCCCeeeeecc-CC----------------CCCCchhhHHHHHHHHHHHHHHHhhc
Q 012202 125 KIARLYGFQGLDLSWN-SA----------------NTSRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E-~~----------------~~~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
-++++|++||+-+|-- .. +...+ ..=..|++++++.+++..+.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~v~~~~p~ 355 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGREN-LEAIYFLQKLNEVVYLEHPD 355 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCC-cHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999921 00 00011 12368999999999887543
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=84.19 E-value=5.2 Score=33.14 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeC-CCC-------------C----------CCccchHhhcChhhHHHHHHHHHHHH
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGG-GNN-------------P----------NYSTYSSMSASSSSRKSFIDSSIKIA 127 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG-~~~-------------~----------~~~~~~~~~~~~~~r~~fi~~l~~~l 127 (468)
.+.+..+++.+|++ |++|+.-+.. +.. + ....+...-.|..-++-++..|.+++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 35677888888887 7888854321 211 0 00124444456677888888898999
Q ss_pred HHcCCCeeeeec
Q 012202 128 RLYGFQGLDLSW 139 (468)
Q Consensus 128 ~~~~~DGvdiD~ 139 (468)
++|.+|||-+||
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999996
No 51
>PF15102 TMEM154: TMEM154 protein family
Probab=83.91 E-value=1.4 Score=36.55 Aligned_cols=9 Identities=11% Similarity=0.460 Sum_probs=4.7
Q ss_pred cccCHHHHH
Q 012202 434 REYSLADIE 442 (468)
Q Consensus 434 ~~~s~~~l~ 442 (468)
..+-.+||.
T Consensus 123 meiEmeeld 131 (146)
T PF15102_consen 123 MEIEMEELD 131 (146)
T ss_pred hhhhHHHHH
Confidence 345556654
No 52
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.57 E-value=14 Score=39.90 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeC-CCCC---------CC-------------ccchH---hhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGG-GNNP---------NY-------------STYSS---MSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG-~~~~---------~~-------------~~~~~---~~~~~~~r~~fi~~l~ 124 (468)
....++.+++.++++ |++|+|-+=- .... .. ..|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 567899999988887 8999986411 0000 00 01111 2346788899999999
Q ss_pred HHHHHcCCCeeeeec-c-------------CCCC-CCchhh--HHHHHHHHHHHHHHHhhc
Q 012202 125 KIARLYGFQGLDLSW-N-------------SANT-SRDKYN--IGILFKEWRAAVDLEARN 168 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~-E-------------~~~~-~~~~~~--~~~ll~~lr~~l~~~~~~ 168 (468)
-+++++++||+-+|- . +... ...+.+ -..|+++|++.+++..+.
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~ 455 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPG 455 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCC
Confidence 999999999999992 1 1110 011223 357999999999987654
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=83.16 E-value=15 Score=39.08 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeC-CCCCC---------C-------------ccchH---hhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGG-GNNPN---------Y-------------STYSS---MSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG-~~~~~---------~-------------~~~~~---~~~~~~~r~~fi~~l~ 124 (468)
+...++.+++.++++ |++|+|=+-- ....+ . ..|.. -..++..|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 467889999988887 8999986410 00000 0 00110 1246788999999999
Q ss_pred HHHHHcCCCeeeeecc-CCC-----------CCC-----chhhHHHHHHHHHHHHHHHhhc
Q 012202 125 KIARLYGFQGLDLSWN-SAN-----------TSR-----DKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E-~~~-----------~~~-----~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
-++++|++||+-||-- ... .++ ....=..|++++++.+++..+.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~ 342 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPG 342 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999951 110 000 0112367999999999886543
No 54
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=82.35 E-value=0.64 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=18.9
Q ss_pred cCHHHHHHHhcCCCcCCccCCCCCccceeeec
Q 012202 436 YSLADIEAATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 436 ~s~~~l~~aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
+.++|++. ...||+|.||+||||..
T Consensus 389 Ip~~ev~l-------~~rIGsGsFGtV~Rg~w 413 (678)
T KOG0193|consen 389 IPPEEVLL-------GERIGSGSFGTVYRGRW 413 (678)
T ss_pred cCHHHhhc-------cceeccccccceeeccc
Confidence 45566543 45899999999999963
No 55
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=82.25 E-value=0.45 Score=50.08 Aligned_cols=24 Identities=42% Similarity=0.769 Sum_probs=21.1
Q ss_pred HhcCCCcCCccCCCCCccceeeec
Q 012202 444 ATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
..++|...++||+|+||.||+|++
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~ 153 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASL 153 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEE
Confidence 567788889999999999999975
No 56
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=82.19 E-value=31 Score=33.73 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=46.7
Q ss_pred CcEEEEEeEEeeCCCc----EEec-CCcchHHHHHHHHHHHhhCCCcEEEEEEe--CCCCCCCc--cc-----h------
Q 012202 48 FTHLMCGFADVNSTTY----ELSL-SPSDEEQFSNFTDTVKIKNPSITTLLSIG--GGNNPNYS--TY-----S------ 107 (468)
Q Consensus 48 ~thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig--G~~~~~~~--~~-----~------ 107 (468)
.--|+.....+++.+. .+.+ .+..-+.++.+++.+|++ +.|+++-|. |... ... .. +
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCC
Confidence 3445556666665531 1222 222346777888788876 778887663 3221 000 00 0
Q ss_pred -----HhhcC---hhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012202 108 -----SMSAS---SSSRKSFIDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 108 -----~~~~~---~~~r~~fi~~l~~~l~~~~~DGvdiD~E 140 (468)
..++. .+-.+.|++... .+++-|||||+|+.-
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~a 163 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAA 163 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccc
Confidence 00110 123355665443 445679999999983
No 57
>PLN02960 alpha-amylase
Probab=82.00 E-value=15 Score=40.19 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe----CCC-------CCCC-------------ccchH---hhcChhhHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG----GGN-------NPNY-------------STYSS---MSASSSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig----G~~-------~~~~-------------~~~~~---~~~~~~~r~~fi~~l 123 (468)
+...++.++..++++ |++|+|-+= +.. ...+ ..|.. -..++..|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 467789999988887 899998751 000 0000 01111 134678888899999
Q ss_pred HHHHHHcCCCeeeeecc-------------------CCCCCCchhhHHHHHHHHHHHHHHHhhc
Q 012202 124 IKIARLYGFQGLDLSWN-------------------SANTSRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 124 ~~~l~~~~~DGvdiD~E-------------------~~~~~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
.-||++|++||+-+|=- ++.. .....-..||++|.+.+++..+.
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~~P~ 604 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQLHPN 604 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhhCCC
Confidence 99999999999999811 1111 12234678999999999875543
No 58
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=81.31 E-value=36 Score=36.45 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=104.5
Q ss_pred CCcEEEE-EeEEeeCCCcE--EecCCcc----hHHHHHHHHHHHhhCCCcEEEE--EEeCCCCCCCc-------------
Q 012202 47 LFTHLMC-GFADVNSTTYE--LSLSPSD----EEQFSNFTDTVKIKNPSITTLL--SIGGGNNPNYS------------- 104 (468)
Q Consensus 47 ~~thi~~-~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~k~~~~~~kvll--sigG~~~~~~~------------- 104 (468)
..+||.+ +|+..++||.. +.+++.. .+.|..+.=.++.+. ++||.- -+-++..+.+.
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~~ 425 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGKT 425 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCcc
Confidence 4788888 77788887632 3344432 334444433456554 788873 33333221000
Q ss_pred -----cchHhhc-ChhhHHHHHHHHHHHHHHc-CCCeeeeecc-------CCC--------------C-------CC---
Q 012202 105 -----TYSSMSA-SSSSRKSFIDSSIKIARLY-GFQGLDLSWN-------SAN--------------T-------SR--- 146 (468)
Q Consensus 105 -----~~~~~~~-~~~~r~~fi~~l~~~l~~~-~~DGvdiD~E-------~~~--------------~-------~~--- 146 (468)
.+.++.- +++.| +.|.+|-+=|.+| .||||=|+-+ -.. + ++
T Consensus 426 ~~~~~~y~rlspf~~~~~-~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~ 504 (672)
T PRK14581 426 SIDPDQYRRLSPFNPEVR-QRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQ 504 (672)
T ss_pred ccCCCCccccCCCCHHHH-HHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHH
Confidence 1111111 33333 6788888888887 7999987643 111 0 00
Q ss_pred -----chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEecc----Ccc--cccCCCChhHHhccccEEeeecccccCCC
Q 012202 147 -----DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAH----SPL--STAAAYPVDSIRQYLNWVHVMTTGYSKPT 215 (468)
Q Consensus 147 -----~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~----~~~--~~~~~~~~~~l~~~~D~v~lm~yd~~~~~ 215 (468)
..+.+..|-.+|++..++.... .+...--+.+ .|. .|. .=++.+..+..||+-+|+|-+...
T Consensus 505 ~w~~~k~~~l~~f~~~l~~~v~~~~~p-----~~~tarniya~~~l~p~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~- 577 (672)
T PRK14581 505 RWTRYKSKYLIDFTNELTREVRDIRGP-----QVKSARNIFAMPILEPESEAWF-AQNLDDFLANYDWVAPMAMPLMEK- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc-----cceehhcccccccCChhHHHHH-HhHHHHHHhhcchhHHhhchhhhc-
Confidence 1234568888999988874321 0111111221 111 111 126778888899999999975422
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEeee
Q 012202 216 WTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWT 264 (468)
Q Consensus 216 ~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~ 264 (468)
...+.+ ..+...-++.+.+.-...+|+|+-|-+ ++|+
T Consensus 578 ---~~~~~~-------~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 578 ---VPLSES-------NEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred ---cccccH-------HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 111111 114444444444343457899999864 4564
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=81.19 E-value=16 Score=39.79 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe-CCCCCC---------C-------------ccch---HhhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG-GGNNPN---------Y-------------STYS---SMSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig-G~~~~~---------~-------------~~~~---~~~~~~~~r~~fi~~l~ 124 (468)
+...++.+++.++++ |++|+|-+= ....++ + ..|. --..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 567899999999887 899998641 000000 0 0111 12346788889999999
Q ss_pred HHHHHcCCCeeeeec-cCC--------------C--CCCchhhHHHHHHHHHHHHHHHhhc
Q 012202 125 KIARLYGFQGLDLSW-NSA--------------N--TSRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~-E~~--------------~--~~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
-+++++++||+-+|- ... . ...+...-..|+++++..+++..+.
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~ 451 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPG 451 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999993 110 0 0011123468999999999887543
No 60
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.48 E-value=1.9 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=10.0
Q ss_pred eeehhHHHHHHHHHH-HHHHHHHHhh
Q 012202 380 AIVLPITAACILLIG-FLLYYFCWMK 404 (468)
Q Consensus 380 ~i~~~~~~~~~~~~~-~~~~~~~~~~ 404 (468)
.++++++++++++++ ++++.+++||
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444444433333 3333344444
No 61
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=75.64 E-value=17 Score=32.71 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCC
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
+.+....|+..+.+...- .+|-+|.|....+++.-.+.+++||+.|.+.+.. ..|-+.=.++..
T Consensus 87 d~~~~adYl~~l~~aA~P-----~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~------v~iVADEWCNT~----- 150 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP-----FKLRIEGPMDAGSREAQIEALAELREELDRRGIN------VEIVADEWCNTL----- 150 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT-----S-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--------EEEEE-TT--SH-----
T ss_pred CHHHHHHHHHHHHHhcCC-----CeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCC------CeEEeehhcCCH-----
Confidence 556666676666666554 4678899988788999999999999999998744 444443223211
Q ss_pred CChhHH--hccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC
Q 012202 192 YPVDSI--RQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGL 247 (468)
Q Consensus 192 ~~~~~l--~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~ 247 (468)
-|+++. ++.+|+|.|.|=|+.|- .++-+++.+..+.|+
T Consensus 151 eDI~~F~da~A~dmVQIKtPDLGgi------------------~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 151 EDIREFADAKAADMVQIKTPDLGGI------------------NNTIEAVLYCKEHGV 190 (248)
T ss_dssp HHHHHHHHTT-SSEEEE-GGGGSST------------------HHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCcCEEEecCCCccch------------------hhHHHHHHHHHhcCC
Confidence 133333 46699999999998654 156666767666653
No 62
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.52 E-value=1.6 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=9.5
Q ss_pred cceeeeehhHHHHHHHHHHHHHHH
Q 012202 376 RLLWAIVLPITAACILLIGFLLYY 399 (468)
Q Consensus 376 ~~~~~i~~~~~~~~~~~~~~~~~~ 399 (468)
..+..|++++++++.+++++++++
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhhe
Confidence 344444444443333333333333
No 63
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=75.50 E-value=5.9 Score=41.26 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=39.7
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeecc--------CCCCCC--chhhHHHHHHHHHHHHHHH
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWN--------SANTSR--DKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E--------~~~~~~--~~~~~~~ll~~lr~~l~~~ 165 (468)
..++..|+-+++.+.+.++..||||+.||== +.+.+- -...|..||++++++++..
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k 302 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDK 302 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCC
Confidence 3477889999999999999999999999931 222211 2567999999999999553
No 64
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=75.44 E-value=19 Score=35.37 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeC----------CCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGG----------GNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG----------~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
+.....+.+.+|++ |+..++++-- ... ....-..- ..++.++.|+.=|++.++.+.=.||.|++=.
T Consensus 103 D~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~-g~~~~~~N-Lk~d~y~~FA~YLa~Vv~~~~~~GI~f~~Is 178 (384)
T PF14587_consen 103 DAGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSAS-GGDDGSDN-LKPDNYDAFADYLADVVKHYKKWGINFDYIS 178 (384)
T ss_dssp SHHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB--S-SSS-S-S-TT-HHHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred CHHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCC-CCCccccc-cChhHHHHHHHHHHHHHHHHHhcCCccceeC
Confidence 45566677777766 7888877632 110 00000111 2467888999888888888877899998743
Q ss_pred CCC--------------CCchhhHHHHHHHHHHHHHHHhhc
Q 012202 142 ANT--------------SRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 142 ~~~--------------~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
|.. +-+.+....||++|+.+|.+.+..
T Consensus 179 P~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~ 219 (384)
T PF14587_consen 179 PFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS 219 (384)
T ss_dssp --S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S
T ss_pred CcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 321 124566789999999999999855
No 65
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.34 E-value=11 Score=37.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 117 KSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 117 ~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
+.|++. +..+++-|||||+|.--+
T Consensus 144 ~~f~~A-A~~a~~aGfDgVeih~ah 167 (361)
T cd04747 144 AAFARA-AADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeccc
Confidence 455543 345566799999999765
No 66
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.06 E-value=29 Score=36.92 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe----CCC----------------CCCCc--------------cchH-------h
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG----GGN----------------NPNYS--------------TYSS-------M 109 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig----G~~----------------~~~~~--------------~~~~-------~ 109 (468)
+.+.+..+++.+|++ |+||||-+= |.. .+++. .|.. -
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567899999988887 899998641 100 00000 0110 1
Q ss_pred hcChhhHHHHHH---H-HHHHHHH-cCCCeeeeeccCCCC-CCchhhHHHHHHHHHHHHHHHhhc
Q 012202 110 SASSSSRKSFID---S-SIKIARL-YGFQGLDLSWNSANT-SRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 110 ~~~~~~r~~fi~---~-l~~~l~~-~~~DGvdiD~E~~~~-~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
..+++.|+.+++ + +..|+++ +|+||.-||--.... ......-..|++++|+++++.++.
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd 366 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPE 366 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCC
Confidence 236777888886 3 4557886 899999999642111 011122458999999999886543
No 67
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=75.02 E-value=1.1 Score=32.97 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=12.0
Q ss_pred ccCHHHHHHHhcCCCc
Q 012202 435 EYSLADIEAATDRLSI 450 (468)
Q Consensus 435 ~~s~~~l~~aT~~f~~ 450 (468)
..||+|-.+|-..|..
T Consensus 56 P~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAK 71 (75)
T ss_dssp GGGSSSHHHHHHHCSS
T ss_pred cccccCHHHHHHHHHh
Confidence 4678888888877743
No 68
>PLN03244 alpha-amylase; Provisional
Probab=73.89 E-value=42 Score=36.42 Aligned_cols=94 Identities=9% Similarity=0.033 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCC-CCCC----------Cc--cch--------------HhhcChhhHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGG-NNPN----------YS--TYS--------------SMSASSSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~-~~~~----------~~--~~~--------------~~~~~~~~r~~fi~~l 123 (468)
....++.++..++++ |++|+|-+--. ..++ +. .|. --..+++.|+=+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 567889999988887 89999875210 0000 00 111 1122467888889999
Q ss_pred HHHHHHcCCCeeeeec------------------c-CCCCCCchhhHHHHHHHHHHHHHHHhh
Q 012202 124 IKIARLYGFQGLDLSW------------------N-SANTSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 124 ~~~l~~~~~DGvdiD~------------------E-~~~~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
.=|+++|++||+-+|= + ++.. .....=+.||+.+...++...+
T Consensus 517 ~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~-~~d~dAv~fL~laN~~ih~~~P 578 (872)
T PLN03244 517 NWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQ-YVDKDALMYLILANEILHALHP 578 (872)
T ss_pred HHHHHHhCcCcceeecchhheeeccccccccCCccccccc-cCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999999981 1 1111 1112345677888777777643
No 69
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.77 E-value=10 Score=37.09 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 116 RKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 116 r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
.+.|++.. +.+++.|||||+|+--+
T Consensus 148 i~~~~~aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 148 IDRFAHAA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEchhh
Confidence 35566544 45677899999998754
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=73.67 E-value=61 Score=37.35 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEE--eC-----CC-----C------CCC-----ccchH---hhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSI--GG-----GN-----N------PNY-----STYSS---MSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi--gG-----~~-----~------~~~-----~~~~~---~~~~~~~r~~fi~~l~ 124 (468)
+...|+.+++.++++ |++|||-+ .. |. . .+. ..|.. -..+++.|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 577899999988887 89999864 10 00 0 000 01111 1246788888999999
Q ss_pred HHHHHcCCCeeeeecc-CC--------------CCCCchh--hHHHHHHHHHHHHHHHhh
Q 012202 125 KIARLYGFQGLDLSWN-SA--------------NTSRDKY--NIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E-~~--------------~~~~~~~--~~~~ll~~lr~~l~~~~~ 167 (468)
-|+++|++||+-+|-- .. .....+. .=..|++++.+.+++..+
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p 950 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHP 950 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999852 10 0000112 236899999999988654
No 71
>PRK14706 glycogen branching enzyme; Provisional
Probab=73.37 E-value=46 Score=35.63 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe----CCCC-----CC-Cc-------------cchH---hhcChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG----GGNN-----PN-YS-------------TYSS---MSASSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig----G~~~-----~~-~~-------------~~~~---~~~~~~~r~~fi~~l~ 124 (468)
....++.+++.++++ |++|+|-+= |... -+ +. .|.. -..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 567889999988887 899998641 1000 00 00 1111 1246788999999999
Q ss_pred HHHHHcCCCeeeeec-cCCC----C----------CCchhhHHHHHHHHHHHHHHHhhc
Q 012202 125 KIARLYGFQGLDLSW-NSAN----T----------SRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~-E~~~----~----------~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
-+++++++||+-+|- .... . ......=..|+++|++.+++..+.
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~ 351 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPG 351 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999993 2110 0 011223468999999999987543
No 72
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=72.30 E-value=17 Score=35.22 Aligned_cols=166 Identities=12% Similarity=0.155 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe---CCCCCCCccchHhhcC------hhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG---GGNNPNYSTYSSMSAS------SSSRKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig---G~~~~~~~~~~~~~~~------~~~r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
+.+....+.+++|+. |+||+|-+- =|.+|..........+ .+....+..++++.|+.. |+..||-+
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEE
Confidence 444455566666666 899999973 2333222222222211 234456667777777775 66677754
Q ss_pred CCC------------CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHh---ccccEEee
Q 012202 142 ANT------------SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIR---QYLNWVHV 206 (468)
Q Consensus 142 ~~~------------~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~---~~~D~v~l 206 (468)
.+. ..+..+|..|+++-.++.++..+. ..+.+.+..+.......+-+..+. --.|.|-+
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~------~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGl 204 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN------IKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGL 204 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST------SEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEE
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC------CcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEE
Confidence 332 356677888888777777775443 344444432221111111222332 23466655
Q ss_pred ecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEeeeecC
Q 012202 207 MTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVK 267 (468)
Q Consensus 207 m~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~ 267 (468)
--|-+ |.+ ++. .+...++.+.++ ... +|++.=- |+.|++.+
T Consensus 205 SyYP~---w~~-------~l~------~l~~~l~~l~~r-y~K-~V~V~Et--~yp~t~~d 245 (332)
T PF07745_consen 205 SYYPF---WHG-------TLE------DLKNNLNDLASR-YGK-PVMVVET--GYPWTLDD 245 (332)
T ss_dssp EE-ST---TST--------HH------HHHHHHHHHHHH-HT--EEEEEEE-----SBS--
T ss_pred ecCCC---Ccc-------hHH------HHHHHHHHHHHH-hCC-eeEEEec--cccccccc
Confidence 55543 321 222 667777776654 333 4554443 55565444
No 73
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=71.45 E-value=36 Score=38.79 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEeC-CCCCC-------Cccch----------------HhhcChhhHHHHHHHHHHHHH
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSIGG-GNNPN-------YSTYS----------------SMSASSSSRKSFIDSSIKIAR 128 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigG-~~~~~-------~~~~~----------------~~~~~~~~r~~fi~~l~~~l~ 128 (468)
..|+.+++.+|++ |++|+|=+=- ..... ...|. ....++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688999888877 8999986411 00000 00000 011246778888999999999
Q ss_pred HcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 129 LYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 129 ~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
+|++||.-||.-.. -+ ..++++++.++++..
T Consensus 633 ey~VDGFRfDl~g~---~d----~~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HD----AASIEIAYKEAKAIN 663 (1111)
T ss_pred hcCCcEEEEecccc---CC----HHHHHHHHHHHHHhC
Confidence 99999999996421 22 235556666665543
No 74
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=70.70 E-value=1.3 Score=30.98 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=0.0
Q ss_pred eeehhHHHHHH
Q 012202 380 AIVLPITAACI 390 (468)
Q Consensus 380 ~i~~~~~~~~~ 390 (468)
.++++++++++
T Consensus 13 avIaG~Vvgll 23 (64)
T PF01034_consen 13 AVIAGGVVGLL 23 (64)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 75
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.37 E-value=37 Score=32.38 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-------CchhhHHHHHHHHH
Q 012202 87 PSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS-------RDKYNIGILFKEWR 159 (468)
Q Consensus 87 ~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~-------~~~~~~~~ll~~lr 159 (468)
.+.+++++|+|.. .+.|+ ..++.+++.|+|+|+|++-.|... .+.+.+.++++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~-~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFV-EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHH-HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 4688999998832 13343 355567778999999998765531 22233445566665
Q ss_pred HHH
Q 012202 160 AAV 162 (468)
Q Consensus 160 ~~l 162 (468)
+..
T Consensus 151 ~~~ 153 (296)
T cd04740 151 KAT 153 (296)
T ss_pred hcc
Confidence 554
No 76
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=70.10 E-value=1e+02 Score=29.25 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe---CCCCCCC----ccchHhhcChhh--HHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG---GGNNPNY----STYSSMSASSSS--RKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig---G~~~~~~----~~~~~~~~~~~~--r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
+......+.+++ ++.|+|||+-+= -|.+|.. ..|..+--++-+ .-.+.+..++.+++ .||++||-+
T Consensus 102 D~~k~ieiakRA--k~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAKRA--KNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred hHHHHHHHHHHH--HhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 333334444444 445999999852 2332211 112222111111 12244555555665 588899865
Q ss_pred CCC-----------C-CchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhc-cccE-Eeee
Q 012202 142 ANT-----------S-RDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQ-YLNW-VHVM 207 (468)
Q Consensus 142 ~~~-----------~-~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~~D~-v~lm 207 (468)
.+. . .+.+.+..|+.+=..++++-.+. ..+.+....+.......+-..+|.+ .||| |.-|
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~------ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~ 250 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPT------IKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGS 250 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCC------ceEEEEecCCCCCchhhHHHHHHHHcCCCceEEee
Confidence 442 1 13344556666655555554332 4555554432222211222345543 4665 3344
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEeeeecCC
Q 012202 208 TTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWTLVKP 268 (468)
Q Consensus 208 ~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~~~~~ 268 (468)
+|- .-|.. +|. +....++..... . +|.||..-. ++.|++.+.
T Consensus 251 SyY--pyWhg-------tl~------nL~~nl~dia~r-Y--~K~VmV~Et-ay~yTlEdg 292 (403)
T COG3867 251 SYY--PYWHG-------TLN------NLTTNLNDIASR-Y--HKDVMVVET-AYTYTLEDG 292 (403)
T ss_pred ecc--ccccC-------cHH------HHHhHHHHHHHH-h--cCeEEEEEe-cceeeeccC
Confidence 442 22533 332 445555555443 2 344443332 455666653
No 77
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=70.06 E-value=53 Score=32.66 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT 144 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~ 144 (468)
.+.+...+..+|++.|++.++.||.|... .+.| ..+++.+++.|.|+++|++--|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~~~--------------~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN--KDAW--------------EEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC--HHHH--------------HHHHHHHHhcCCCEEEEECCCCCC
Confidence 34444445567767778899999965322 1222 224446677899999999976654
No 78
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.03 E-value=38 Score=29.19 Aligned_cols=170 Identities=20% Similarity=0.187 Sum_probs=99.5
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCccccc
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTA 189 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~ 189 (468)
+-+|-+|+.-+..+ .-|.|=| |-.+|...+-..||.-.|+++|+..++. ..+|.++..-|....
T Consensus 4 LvSPin~eEA~eAi-----eGGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~d---------~~vSAT~GDvpYKPG 67 (235)
T COG1891 4 LVSPINREEAIEAI-----EGGADII--DVKNPAEGSLGANFPWVIREIREVVPED---------QEVSATVGDVPYKPG 67 (235)
T ss_pred eeccCCHHHHHHHh-----hCCCceE--eccCcccCcccCCChHHHHHHHHhCccc---------eeeeeeecCCCCCCc
Confidence 33555665544433 2356654 4456655455689999999999998876 678888764443322
Q ss_pred CCCChhHH---hccccEEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-----cCCCCCceEEecceeEE
Q 012202 190 AAYPVDSI---RQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIE-----EGLSADKLVLCLPFYGF 261 (468)
Q Consensus 190 ~~~~~~~l---~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~-----~g~~~~Ki~lglp~yG~ 261 (468)
...+..+ ..-+|||-+--|+.. +.+++++.+.+ +-++++|+|+.-. |+-
T Consensus 68 -T~slAalGaav~GaDYiKVGLYg~k---------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAaG-YaD 124 (235)
T COG1891 68 -TASLAALGAAVAGADYIKVGLYGTK---------------------NEEEALEVMKNVVRAVKDFDPSKKVVAAG-YAD 124 (235)
T ss_pred -hHHHHHHHhHhhCCceEEEeecccc---------------------cHHHHHHHHHHHHHHHhccCCCceEEecc-ccc
Confidence 1122333 345899999888643 33444444332 4588889887642 332
Q ss_pred eeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhcCCCCeEEEEecceeeEEEE-eCCEEEEEcCHHHHHHHHHHhh
Q 012202 262 AWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKNYGPNVRVMYNSTYVVNYCS-IGKIWFGFDDVEAVRVKVSYAK 340 (468)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~~~~~i~~~~~~s~~~k~~~~~ 340 (468)
.++ -+.++--.+.+...+.+ ..+.. ..-.. +++..+-|.+.+.+..-.+.+.
T Consensus 125 a~R--------------------vgsv~Pl~~P~vaa~ag--~DvaM-----vDTaiKDGkslFdfm~~e~l~eFvd~Ah 177 (235)
T COG1891 125 AHR--------------------VGSVSPLLLPEVAAEAG--ADVAM-----VDTAIKDGKSLFDFMDEEELEEFVDLAH 177 (235)
T ss_pred hhh--------------------ccCcCccccHHHHHhcC--CCEEE-----EecccccchhHHhhhcHHHHHHHHHHHH
Confidence 222 12233334445454455 22221 11111 4566667888999998889999
Q ss_pred hcCcc
Q 012202 341 EKKLR 345 (468)
Q Consensus 341 ~~~L~ 345 (468)
.+||-
T Consensus 178 ~hGL~ 182 (235)
T COG1891 178 EHGLE 182 (235)
T ss_pred HcchH
Confidence 88864
No 79
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.02 E-value=19 Score=35.79 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
-+.++.++..+|++ |.++++-+
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEc
Confidence 35677777777776 78988877
No 80
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=69.40 E-value=10 Score=37.01 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=27.2
Q ss_pred CCcEEEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 47 LFTHLMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 47 ~~thi~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
.+--|+.....+++.+.. +.+ ++..-+.++.+...+|++ |.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 355556665666655321 111 223456677777777776 78888765
No 81
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.80 E-value=25 Score=34.09 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=25.9
Q ss_pred CcEEEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 48 FTHLMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 48 ~thi~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
.--|+.....+++.+.. +.+ ++..-+.++.++..+|++ +.|+++-+
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 44566666666665421 111 223456677777777776 66766544
No 82
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.65 E-value=34 Score=33.10 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=28.1
Q ss_pred hCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 85 KNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 85 ~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
...+..+++.|+|.+. +.|+ ..+..+++.|+|||||+.--|.
T Consensus 59 ~~~~~p~i~ql~g~~~----------------~~~~-~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSDP----------------DTMA-EAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCCH----------------HHHH-HHHHHHHhCCCCEEEEECCCCH
Confidence 3346778889988442 2233 2444667889999999986553
No 83
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=67.22 E-value=1.8 Score=40.82 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012202 149 YNIGILFKEWRAAVDLE 165 (468)
Q Consensus 149 ~~~~~ll~~lr~~l~~~ 165 (468)
..-..||+.|...|+..
T Consensus 19 ~~ki~lVekLA~~~GD~ 35 (290)
T PF05454_consen 19 QRKILLVEKLARLFGDR 35 (290)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 33445667777666654
No 84
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=66.99 E-value=57 Score=35.48 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeC-------------CCCCCCccch-----------H---hhcChhhHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGG-------------GNNPNYSTYS-----------S---MSASSSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG-------------~~~~~~~~~~-----------~---~~~~~~~r~~fi~~l 123 (468)
+...++.+++.++++ |++|+|-+-- +.......|. . -..+++.|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 467789999988877 8999986411 0000000010 0 122467788889999
Q ss_pred HHHHHHcCCCeeeeecc-------------CC-------CCCCchhhHHHHHHHHHHHHHHHhhc
Q 012202 124 IKIARLYGFQGLDLSWN-------------SA-------NTSRDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 124 ~~~l~~~~~DGvdiD~E-------------~~-------~~~~~~~~~~~ll~~lr~~l~~~~~~ 168 (468)
.-|+++|++||+-||=- +. +...| ..=..||+++...+++..+.
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d-~~a~~fL~~~N~~i~~~~p~ 439 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATD-VDAVVYLMLANDLLHGLYPE 439 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccC-hHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999821 10 11112 23367888888888886543
No 85
>PTZ00284 protein kinase; Provisional
Probab=66.97 E-value=1.2 Score=45.66 Aligned_cols=29 Identities=38% Similarity=0.614 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCcCCccCCCCCccceeeec
Q 012202 439 ADIEAATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 439 ~~l~~aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
+++...+++|...++||+|+||+||+|..
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~ 150 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWD 150 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEE
Confidence 34445567787788999999999999863
No 86
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=66.81 E-value=12 Score=36.82 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=16.9
Q ss_pred CCcCCccCCCCCccceeeec
Q 012202 448 LSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 448 f~~~~~iG~GgfG~VYkg~L 467 (468)
|.-+.++-+|.||.||+|.+
T Consensus 286 v~l~~llqEGtFGri~~gI~ 305 (563)
T KOG1024|consen 286 VRLSCLLQEGTFGRIYRGIW 305 (563)
T ss_pred eechhhhhcCchhheeeeee
Confidence 66677889999999999954
No 87
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=66.23 E-value=24 Score=34.02 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CCchhhHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----------SRDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~~~ll~ 156 (468)
+..+.+.|.|.+ + +.|++. +..+++.|+|||||+.--|.. -.+.+...++++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~a-A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAEN-AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHH-HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 456788888743 2 334443 334566799999999987651 134444556666
Q ss_pred HHHHHHH
Q 012202 157 EWRAAVD 163 (468)
Q Consensus 157 ~lr~~l~ 163 (468)
++|++.+
T Consensus 125 avr~~~~ 131 (312)
T PRK10550 125 AMREAVP 131 (312)
T ss_pred HHHHhcC
Confidence 6666653
No 88
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=65.75 E-value=82 Score=31.07 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEe
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIG 96 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsig 96 (468)
-+.++.+...+|++ |.|+++-|.
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~ 104 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLW 104 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEec
Confidence 56778888888877 678887774
No 89
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.63 E-value=5.6 Score=42.54 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=15.0
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
...||+|.||.||+|..
T Consensus 491 ~~eLGegaFGkVf~a~~ 507 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEA 507 (774)
T ss_pred hhhhcCchhhhhhhhhc
Confidence 56899999999999975
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.35 E-value=2.6 Score=32.55 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=8.4
Q ss_pred CcchhHHHHHHH
Q 012202 1 MASKIIILVLHI 12 (468)
Q Consensus 1 M~~~~~~~~~~~ 12 (468)
|+||++++|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 999987655433
No 91
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=65.23 E-value=48 Score=31.69 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC-------CchhhHHHHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYG-FQGLDLSWNSANTS-------RDKYNIGILFKEWR 159 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGvdiD~E~~~~~-------~~~~~~~~ll~~lr 159 (468)
+..++++|+|.. .+.|++ +++.++++| +|||+|+.--|... .+.+...++++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 678999998832 134443 455568888 99999988544321 23344556666666
Q ss_pred HHH
Q 012202 160 AAV 162 (468)
Q Consensus 160 ~~l 162 (468)
+..
T Consensus 154 ~~~ 156 (301)
T PRK07259 154 EVV 156 (301)
T ss_pred Hhc
Confidence 655
No 92
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.03 E-value=38 Score=33.34 Aligned_cols=133 Identities=16% Similarity=0.257 Sum_probs=67.6
Q ss_pred CcchHHHHHHHHHHHhhCCCcEEEEEE--eCCCC-CC----------Ccc--------chHhhcC---hhhHHHHHHHHH
Q 012202 69 PSDEEQFSNFTDTVKIKNPSITTLLSI--GGGNN-PN----------YST--------YSSMSAS---SSSRKSFIDSSI 124 (468)
Q Consensus 69 ~~~~~~~~~~~~~~k~~~~~~kvllsi--gG~~~-~~----------~~~--------~~~~~~~---~~~r~~fi~~l~ 124 (468)
+..-+.++.++..+|++ |.++++-+ +|... +. |.. ....++. ..-.+.|++...
T Consensus 74 d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 74 DSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred hhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 33557778888888877 78888766 23211 00 000 0011111 123355665444
Q ss_pred HHHHHcCCCeeeeeccC---------CCC----------CCchhh-HHHHHHHHHHHHHHH-hhcCCCCceEEEEEEecc
Q 012202 125 KIARLYGFQGLDLSWNS---------ANT----------SRDKYN-IGILFKEWRAAVDLE-ARNNSSQSQLILTAKVAH 183 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~---------~~~----------~~~~~~-~~~ll~~lr~~l~~~-~~~~~~~~~~~ls~a~~~ 183 (468)
.+++-|||||+|+.-+ |.. -+++.. ..+.|+++|++++.. ... +.|.+.+.+
T Consensus 152 -~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~------~~v~~R~s~ 224 (353)
T cd04735 152 -RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKD------FILGYRFSP 224 (353)
T ss_pred -HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCC------ceEEEEECc
Confidence 4566899999999632 221 112222 346777777777521 011 667777664
Q ss_pred CcccccCCCC-------hhHHhcc-ccEEeeecccc
Q 012202 184 SPLSTAAAYP-------VDSIRQY-LNWVHVMTTGY 211 (468)
Q Consensus 184 ~~~~~~~~~~-------~~~l~~~-~D~v~lm~yd~ 211 (468)
.... ..+.+ .+.+.+. +|+|+|....+
T Consensus 225 ~~~~-~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 225 EEPE-EPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred cccc-CCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 3211 11222 1233333 79999876543
No 93
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.52 E-value=25 Score=34.87 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=47.9
Q ss_pred CcEEEEEeEEeeCCCcE-----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE--eCCCCCCC---------ccc----
Q 012202 48 FTHLMCGFADVNSTTYE-----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI--GGGNNPNY---------STY---- 106 (468)
Q Consensus 48 ~thi~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi--gG~~~~~~---------~~~---- 106 (468)
.--|+.....+++++.. +.+ .+..-+.++.++..+|++ |.|+++-+ +|...... +..
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 44556666666665421 111 223456677777777776 78888766 33211000 000
Q ss_pred -------hHhhcCh---hhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 107 -------SSMSASS---SSRKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 107 -------~~~~~~~---~~r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
...++.. .-.+.|++.. ..+++-|||||+|+--+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 0111111 2345566544 45566799999999765
No 94
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=64.50 E-value=84 Score=30.04 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC---------
Q 012202 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS--------- 145 (468)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~--------- 145 (468)
+.+.+..+++..++..++.++.|... + +.|++ +++.+++.++|+|||++-.|...
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l 149 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAV 149 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhh
Confidence 33334445554446778899877422 1 23333 44566778999999999876531
Q ss_pred -CchhhHHHHHHHHHHHH
Q 012202 146 -RDKYNIGILFKEWRAAV 162 (468)
Q Consensus 146 -~~~~~~~~ll~~lr~~l 162 (468)
.+.+.+.++++.+|+..
T Consensus 150 ~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 150 GQDPELVEEICRWVREAV 167 (299)
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 33445566666666544
No 95
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.18 E-value=46 Score=36.03 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEe-------CCCCC-------CCccc-----------h--------HhhcChhhHHH
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIG-------GGNNP-------NYSTY-----------S--------SMSASSSSRKS 118 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsig-------G~~~~-------~~~~~-----------~--------~~~~~~~~r~~ 118 (468)
...++.+++.+|++ |++|+|=+= +...+ +...+ . --..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 46788999888887 899998651 10000 00000 0 01225677888
Q ss_pred HHHHHHHHHHHcCCCeeeeeccCCCC--CCchhhHHHHHHHHHH
Q 012202 119 FIDSSIKIARLYGFQGLDLSWNSANT--SRDKYNIGILFKEWRA 160 (468)
Q Consensus 119 fi~~l~~~l~~~~~DGvdiD~E~~~~--~~~~~~~~~ll~~lr~ 160 (468)
+++++.-|++++++||.-||.-.... .........|+++|+.
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 88899999999999999999743221 0111223467777775
No 96
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=63.88 E-value=33 Score=36.75 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHHHHHH-cCCCeeeeeccCCCCC-------------------------C-----------chhhHHHH
Q 012202 112 SSSSRKSFIDSSIKIARL-YGFQGLDLSWNSANTS-------------------------R-----------DKYNIGIL 154 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~-~~~DGvdiD~E~~~~~-------------------------~-----------~~~~~~~l 154 (468)
+++.| ++|.+|..-|-+ +.+|||-||-.-..++ . ..+.+..|
T Consensus 439 ~pe~r-~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f 517 (671)
T PRK14582 439 DDRVR-AQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDF 517 (671)
T ss_pred CHHHH-HHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 44555 456666555544 6999999986532110 0 11235688
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccC-----CCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCC
Q 012202 155 FKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAA-----AYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDP 229 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~ 229 (468)
-.+|.+..++.... .+...--+.+.+-.... .-++.+..+.-||+-+|+.-+... ...+.+
T Consensus 518 ~~~l~~~v~~~~~~-----~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~----- 583 (671)
T PRK14582 518 TLELSARVKAIRGP-----QVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS----- 583 (671)
T ss_pred HHHHHHHHHhhcCc-----cceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH-----
Confidence 88898888875321 02211112211111100 126677888889999999544322 111111
Q ss_pred CCCCcHHHHHHHHHHcCCCCCceEEecceeEEeee
Q 012202 230 NSVSNTEYGITEWIEEGLSADKLVLCLPFYGFAWT 264 (468)
Q Consensus 230 ~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~~~ 264 (468)
..+...-++.+.+.-...+|+|+-|-+ ++|+
T Consensus 584 --~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 --DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred --HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 124555555555444567999999865 4564
No 97
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=63.73 E-value=5.9 Score=32.66 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=6.1
Q ss_pred HHHHhhcccccc
Q 012202 399 YFCWMKTLKLKA 410 (468)
Q Consensus 399 ~~~~~~~~~~~~ 410 (468)
+++++++|+++.
T Consensus 18 ~~~~~~rRR~r~ 29 (130)
T PF12273_consen 18 LFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHhhc
Confidence 344556665543
No 98
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=63.45 E-value=12 Score=27.79 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=28.1
Q ss_pred chHhhcC-hhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012202 106 YSSMSAS-SSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 106 ~~~~~~~-~~~r~~fi~~l~~~l~~~~~DGvdiD~ 139 (468)
+.....+ +.-|..+++.+++.+..-.+|||-+|-
T Consensus 41 ~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 41 YQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 3333444 899999999999999988999999884
No 99
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=62.42 E-value=1.4e+02 Score=29.07 Aligned_cols=91 Identities=9% Similarity=0.104 Sum_probs=47.3
Q ss_pred CCcEEEEEeEEeeCCCc----EEec-CCcchHHHHHHHHHHHhhCCCcEEEEEEe--CCCCCC-------Cc-------c
Q 012202 47 LFTHLMCGFADVNSTTY----ELSL-SPSDEEQFSNFTDTVKIKNPSITTLLSIG--GGNNPN-------YS-------T 105 (468)
Q Consensus 47 ~~thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig--G~~~~~-------~~-------~ 105 (468)
.+--|+.....+++++. .+.+ .+..-+.++.++..+|++ |.++++-+. |..... |. .
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCC
Confidence 34555665555655531 1112 223456667777777776 788887763 322100 00 0
Q ss_pred chHhhcC---hhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012202 106 YSSMSAS---SSSRKSFIDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 106 ~~~~~~~---~~~r~~fi~~l~~~l~~~~~DGvdiD~E 140 (468)
....++. .+-.+.|++.. ..+++-|||||+|+--
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 0011111 12335566543 5556679999999976
No 100
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=62.05 E-value=75 Score=32.07 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC----------Cchh
Q 012202 80 DTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS----------RDKY 149 (468)
Q Consensus 80 ~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~----------~~~~ 149 (468)
..+++..++..++++|.|... + +.+ ...+..+++.+.|+|||++-.|... .+.+
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~------------~---~~~-~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~ 154 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECN------------E---EEW-KEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPE 154 (420)
T ss_pred HHHHhhCCCceEEEEeccCCC------------H---HHH-HHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHH
Confidence 345544456678899987421 1 222 3455566778999999999877521 3445
Q ss_pred hHHHHHHHHHHHH
Q 012202 150 NIGILFKEWRAAV 162 (468)
Q Consensus 150 ~~~~ll~~lr~~l 162 (468)
.+.++++++++..
T Consensus 155 ~~~~i~~~v~~~~ 167 (420)
T PRK08318 155 LVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHHHHhcc
Confidence 5666676666653
No 101
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=61.68 E-value=2.1 Score=40.89 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.2
Q ss_pred CCcCCccCCCCCccceeee
Q 012202 448 LSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 448 f~~~~~iG~GgfG~VYkg~ 466 (468)
|-.-|.|++|.||.||||.
T Consensus 78 fe~lnrI~EGtyGiVYRak 96 (419)
T KOG0663|consen 78 FEKLNRIEEGTYGVVYRAK 96 (419)
T ss_pred HHHHhhcccCcceeEEEec
Confidence 4446899999999999985
No 102
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.65 E-value=46 Score=32.16 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=28.1
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
.++++.|+-|.+.+.+.+.+.|+||.=+|+-.|.
T Consensus 128 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 128 ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 3478888888888888888999999999996543
No 103
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=60.58 E-value=3.8 Score=41.61 Aligned_cols=17 Identities=47% Similarity=0.837 Sum_probs=15.4
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
..+||+|.||.||+|.|
T Consensus 162 ~kkLGeGaFGeV~~G~l 178 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKL 178 (474)
T ss_pred cceeecccccEEEEEEE
Confidence 36899999999999987
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=60.09 E-value=12 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=8.2
Q ss_pred cccceeeeehhHHHHHHHH
Q 012202 374 NKRLLWAIVLPITAACILL 392 (468)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~ 392 (468)
..++++.++++++.+++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVI 54 (221)
T ss_pred ceeeeeeeecchhhhHHHH
Confidence 3344444444444433333
No 105
>PF15345 TMEM51: Transmembrane protein 51
Probab=59.02 E-value=18 Score=32.59 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 012202 384 PITAACILLIGFLLYYFCWMKTL 406 (468)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~ 406 (468)
.|+++++++++.+|+.++.||++
T Consensus 64 LVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 64 LVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 106
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=59.01 E-value=2.8 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=17.6
Q ss_pred hcCCCcCCccCCCCCccceeee
Q 012202 445 TDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~f~~~~~iG~GgfG~VYkg~ 466 (468)
-+.|-+=.+||+||||.|||+.
T Consensus 478 ~~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 478 LNDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred hhhhHHHHHhcCCCCceEEEEe
Confidence 3446566699999999999975
No 107
>PRK03995 hypothetical protein; Provisional
Probab=58.75 E-value=28 Score=32.64 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCCCCCCccchHhhcCh-----------hhHHHHHHHHHHHHHHc--CCCeeeeeccCCCCCCchhhHHH
Q 012202 87 PSITTLLSIGGGNNPNYSTYSSMSASS-----------SSRKSFIDSSIKIARLY--GFQGLDLSWNSANTSRDKYNIGI 153 (468)
Q Consensus 87 ~~~kvllsigG~~~~~~~~~~~~~~~~-----------~~r~~fi~~l~~~l~~~--~~DGvdiD~E~~~~~~~~~~~~~ 153 (468)
...++++.|||.-+ ...|..++... ..-.---+.+.+.+++. ++|.+-|||....+ .+++.+..
T Consensus 179 ~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~ 255 (267)
T PRK03995 179 EKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIE 255 (267)
T ss_pred cCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHH
Confidence 57889999999876 54455443321 10000012355666664 68999999986554 67777777
Q ss_pred HHHHH
Q 012202 154 LFKEW 158 (468)
Q Consensus 154 ll~~l 158 (468)
+++++
T Consensus 256 ~le~~ 260 (267)
T PRK03995 256 FLEEL 260 (267)
T ss_pred HHHHC
Confidence 77664
No 108
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.44 E-value=7.2 Score=38.81 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=14.1
Q ss_pred CCccCCCCCccceeee
Q 012202 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~ 466 (468)
-.+||+|.||-|.||.
T Consensus 216 ~e~IGkGRyGEVwrG~ 231 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGR 231 (513)
T ss_pred EEEecCccccceeecc
Confidence 5689999999999885
No 109
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=58.29 E-value=25 Score=37.18 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCcEEEEE---EeCCCCCCCccchHhhcChhhHHHH-HHHHHHHHHHcCCCeeeeeccCCCCCCchhhHH
Q 012202 77 NFTDTVKIKNPSITTLLS---IGGGNNPNYSTYSSMSASSSSRKSF-IDSSIKIARLYGFQGLDLSWNSANTSRDKYNIG 152 (468)
Q Consensus 77 ~~~~~~k~~~~~~kvlls---igG~~~~~~~~~~~~~~~~~~r~~f-i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~ 152 (468)
.+++.+|++||++|+... .=||-. ..+.....++..-..+ ++-|..--+.| |+||||--+- .++..=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~---gl~idYvg~~--NEr~~~~ 187 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTH---GLDIDYVGIW--NERGFDV 187 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH--------EE-S---TTS---H
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHh---CCCceEechh--hccCCCh
Confidence 567799999999999853 223332 1111111122222222 22233333556 4556664332 2332235
Q ss_pred HHHHHHHHHHHHHhh
Q 012202 153 ILFKEWRAAVDLEAR 167 (468)
Q Consensus 153 ~ll~~lr~~l~~~~~ 167 (468)
..++.||..|+.++.
T Consensus 188 ~~ik~lr~~l~~~gy 202 (669)
T PF02057_consen 188 NYIKWLRKALNSNGY 202 (669)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHhhccc
Confidence 789999999998764
No 110
>PLN02877 alpha-amylase/limit dextrinase
Probab=58.16 E-value=60 Score=36.31 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012202 113 SSSRKSFIDSSIKIARLYGFQGLDLSWNSA 142 (468)
Q Consensus 113 ~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~ 142 (468)
+.-|+-+++++.-|+++|++||.-||.-..
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~ 563 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGH 563 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcccc
Confidence 456677899999999999999999998643
No 111
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=58.08 E-value=76 Score=30.89 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCc-
Q 012202 69 PSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRD- 147 (468)
Q Consensus 69 ~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~- 147 (468)
+...+.+...+..++++. ++.++++|+|.+. +.+ ..++..+++.|+|+|+|++-.|....+
T Consensus 83 n~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~ 144 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAV-DIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDI 144 (334)
T ss_pred CcCHHHHHHHHHHHHHhc-CCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCC
Confidence 333444445554555443 6889999988432 122 345556677899999999865332111
Q ss_pred -----hhhHHHHHHHHHHHH
Q 012202 148 -----KYNIGILFKEWRAAV 162 (468)
Q Consensus 148 -----~~~~~~ll~~lr~~l 162 (468)
.+.+.++++++++..
T Consensus 145 ~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 145 SGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 123556666666554
No 112
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=57.92 E-value=85 Score=30.22 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=46.5
Q ss_pred cCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC
Q 012202 67 LSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYG-FQGLDLSWNSANTS 145 (468)
Q Consensus 67 ~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGvdiD~E~~~~~ 145 (468)
+.+...+.+.+.+..+++..++..++.||-|.+. +.+. .+++.++..+ .|.++|+.--|..+
T Consensus 71 l~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~ 133 (310)
T PRK02506 71 LPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVP 133 (310)
T ss_pred CCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCC
Confidence 3344444444444455555456888999877442 2222 3344566777 89999999866321
Q ss_pred ------CchhhHHHHHHHHHHHH
Q 012202 146 ------RDKYNIGILFKEWRAAV 162 (468)
Q Consensus 146 ------~~~~~~~~ll~~lr~~l 162 (468)
.|.+.+.++++.+|+..
T Consensus 134 ~~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 134 GKPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred CccccccCHHHHHHHHHHHHHhc
Confidence 23445666677776654
No 113
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=57.18 E-value=1.5e+02 Score=26.91 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=26.3
Q ss_pred ceEEecceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHH
Q 012202 251 KLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNH 296 (468)
Q Consensus 251 Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~ 296 (468)
-|.+++.-.|+.-++.++.-..+-..+..+....+|+++..++.++
T Consensus 182 ~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 182 LITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLREL 227 (228)
T ss_pred EEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhh
Confidence 4667777677766665543332222222223355889999888764
No 114
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=56.35 E-value=17 Score=27.18 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhc
Q 012202 391 LLIGFLLYYFCWMKT 405 (468)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (468)
++++++++.|+.+|+
T Consensus 45 il~VilwfvCC~kRk 59 (94)
T PF05393_consen 45 ILLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444444444433
No 115
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.32 E-value=41 Score=32.23 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=28.2
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNSA 142 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~ 142 (468)
.++++.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 457889988888888888899999999999654
No 116
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=55.00 E-value=5.1 Score=39.70 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=15.9
Q ss_pred CCcCCccCCCCCccceeee
Q 012202 448 LSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 448 f~~~~~iG~GgfG~VYkg~ 466 (468)
|.-.+.||+|+||.||++.
T Consensus 40 ~~~~~~LG~G~fg~V~~~~ 58 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEAT 58 (374)
T ss_pred ceehheecCCCcccEEEEE
Confidence 4457799999999999875
No 117
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=54.59 E-value=90 Score=31.20 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCC-CCCCcc------c----------------hHhhcChhhHHHHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGN-NPNYST------Y----------------SSMSASSSSRKSFIDSSIKIA 127 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~-~~~~~~------~----------------~~~~~~~~~r~~fi~~l~~~l 127 (468)
.+..+..++..+++. |+|.=|=+.=.. .++|.. | .--+++++.|+-+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 456688888888877 677665442110 001111 0 111457788888899999999
Q ss_pred HHcCCCeeeeeccCCCC----CC---chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhcc
Q 012202 128 RLYGFQGLDLSWNSANT----SR---DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQY 200 (468)
Q Consensus 128 ~~~~~DGvdiD~E~~~~----~~---~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~ 200 (468)
+++|+|.|-+|+..... +. ....+..-+-+|.++|.++.+. +.+..-...+ .+.|+ .+..+
T Consensus 180 ~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~------v~iE~CssGG-----~R~D~-g~l~~ 247 (394)
T PF02065_consen 180 REWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD------VLIENCSSGG-----GRFDP-GMLYY 247 (394)
T ss_dssp HHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT------SEEEE-BTTB-----TTTSH-HHHCC
T ss_pred HhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC------cEEEeccCCC-----Ccccc-chhee
Confidence 99999999999975332 11 1223343333444444444333 5666554322 23564 46666
Q ss_pred ccEE
Q 012202 201 LNWV 204 (468)
Q Consensus 201 ~D~v 204 (468)
.+.+
T Consensus 248 ~~~~ 251 (394)
T PF02065_consen 248 TPQS 251 (394)
T ss_dssp SSEE
T ss_pred cccc
Confidence 6655
No 118
>PTZ00036 glycogen synthase kinase; Provisional
Probab=54.46 E-value=4 Score=41.52 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=18.7
Q ss_pred hcCCCcCCccCCCCCccceeeec
Q 012202 445 TDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 445 T~~f~~~~~iG~GgfG~VYkg~L 467 (468)
+++|....+||+|+||.||+|..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~ 87 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAIC 87 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEE
Confidence 34566678999999999999863
No 119
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=54.13 E-value=43 Score=32.71 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=24.6
Q ss_pred EEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 51 LMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 51 i~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
|+.....+++.+.. +.+ .+..-+.++.++..+|++ +.|+++-+
T Consensus 50 Ii~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~--ga~~~~QL 97 (338)
T cd02933 50 IITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAK--GGKIFLQL 97 (338)
T ss_pred EEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCeEEEEc
Confidence 44555556555421 111 222346677777777776 78888766
No 120
>PRK03705 glycogen debranching enzyme; Provisional
Probab=54.02 E-value=54 Score=35.21 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEe----CC---CCCC-------Cc------------cch-----HhhcChhhHHHHHH
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSIG----GG---NNPN-------YS------------TYS-----SMSASSSSRKSFID 121 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsig----G~---~~~~-------~~------------~~~-----~~~~~~~~r~~fi~ 121 (468)
..|+.+++.++++ |++|+|=+= +. ..+. .. .+. --..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4788899888877 899998651 00 0000 00 000 11236778888999
Q ss_pred HHHHHHHHcCCCeeeeecc
Q 012202 122 SSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 122 ~l~~~l~~~~~DGvdiD~E 140 (468)
++.-|++++++||.-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999974
No 121
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=53.88 E-value=3.5 Score=40.83 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCcCCccCCCCCccceeee
Q 012202 438 LADIEAATDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 438 ~~~l~~aT~~f~~~~~iG~GgfG~VYkg~ 466 (468)
+.++....++|.-...||+|+||.||++.
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~ 63 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVR 63 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEE
Confidence 44455556778888899999999999885
No 122
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=53.26 E-value=21 Score=32.99 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=30.9
Q ss_pred EEeeecccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecceeEEe
Q 012202 203 WVHVMTTGYSKPTWTNFTGAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPFYGFA 262 (468)
Q Consensus 203 ~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~yG~~ 262 (468)
.+|+|+|||.|. +..+|-++-.. ...+++.+++.+.+..-+.++|+| ||++
T Consensus 88 n~nv~~~DYSGy--G~S~G~psE~n---~y~Di~avye~Lr~~~g~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGY--GRSSGKPSERN---LYADIKAVYEWLRNRYGSPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecccc--cccCCCccccc---chhhHHHHHHHHHhhcCCCceEEE----EEec
Confidence 579999999885 33344444331 123677777766653227777765 5654
No 123
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=53.26 E-value=8 Score=30.77 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=14.2
Q ss_pred HHHHHHcCCCCCceEEec
Q 012202 239 ITEWIEEGLSADKLVLCL 256 (468)
Q Consensus 239 ~~~~~~~g~~~~Ki~lgl 256 (468)
.+.++++|||++.||||+
T Consensus 80 a~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHTT--GGGEEETT
T ss_pred HHHHHHcCCCHHHEEEcc
Confidence 467899999999999997
No 124
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=53.03 E-value=42 Score=30.47 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=38.8
Q ss_pred HhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CCchhhH
Q 012202 83 KIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----------SRDKYNI 151 (468)
Q Consensus 83 k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~ 151 (468)
.....+..++++|+|... +.|++ .++.+++.|+|||+|+.-.|.. ..+.+..
T Consensus 49 ~~~~~~~p~~~qi~g~~~----------------~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~ 111 (231)
T cd02801 49 TRNPEERPLIVQLGGSDP----------------ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELV 111 (231)
T ss_pred ccCccCCCEEEEEcCCCH----------------HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHH
Confidence 334567889999998432 23333 3445566899999999755431 0233345
Q ss_pred HHHHHHHHHHHH
Q 012202 152 GILFKEWRAAVD 163 (468)
Q Consensus 152 ~~ll~~lr~~l~ 163 (468)
.++++++|+..+
T Consensus 112 ~eii~~v~~~~~ 123 (231)
T cd02801 112 AEIVRAVREAVP 123 (231)
T ss_pred HHHHHHHHHhcC
Confidence 566666666554
No 125
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=52.19 E-value=1.9e+02 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.405 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-----eCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSI-----GGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-----gG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
......+..+++...+.++++++ ||... .+.+.|.++ +..++..++.|=|||.++.
T Consensus 47 ~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~----------~~~~~~~~l---l~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 47 DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQ----------FTNDLYLNL---LSDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCC----------CCHHHHHHH---HHHHHHhCCCCEEEEEccc
Confidence 34555666666655578999998 44321 133444443 3345566678999998864
No 126
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=52.03 E-value=5.2 Score=41.84 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.0
Q ss_pred HHHhcCCCcCCccCCCCCccceeeec
Q 012202 442 EAATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 442 ~~aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
...+..+...++||+|+||.||+|..
T Consensus 329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~ 354 (535)
T PRK09605 329 EEVKRRKIPDHLIGKGAEADIKKGEY 354 (535)
T ss_pred cccccccCccceeccCCcEEEEEEee
Confidence 33445556788999999999999754
No 127
>PF15050 SCIMP: SCIMP protein
Probab=51.98 E-value=12 Score=29.74 Aligned_cols=10 Identities=0% Similarity=-0.001 Sum_probs=4.9
Q ss_pred cCHHHHHHHh
Q 012202 436 YSLADIEAAT 445 (468)
Q Consensus 436 ~s~~~l~~aT 445 (468)
-+|.-+.+++
T Consensus 94 atYS~vnk~r 103 (133)
T PF15050_consen 94 ATYSLVNKVR 103 (133)
T ss_pred chhhhhHhhc
Confidence 4455555443
No 128
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=51.96 E-value=81 Score=31.12 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=26.0
Q ss_pred CcEEEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 48 FTHLMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 48 ~thi~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
+--|+.....+++.+.. ..+ .+..-+.++.++..+|++ |.|+++-+
T Consensus 49 ~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~--Ga~i~~QL 99 (362)
T PRK10605 49 AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAE--GGHIAVQL 99 (362)
T ss_pred CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhC--CCEEEEec
Confidence 33455555566555321 111 122346667777777766 78888776
No 129
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=51.93 E-value=49 Score=29.57 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=39.9
Q ss_pred HHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccE
Q 012202 124 IKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNW 203 (468)
Q Consensus 124 ~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~ 203 (468)
++.+.+.|.|-|-+.+|-. .....+++.+|+. + ....+++-+..... .++.+.+.+|+
T Consensus 73 i~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~----g--------~k~GialnP~T~~~----~~~~~l~~vD~ 130 (201)
T PF00834_consen 73 IEEFAEAGADYITFHAEAT------EDPKETIKYIKEA----G--------IKAGIALNPETPVE----ELEPYLDQVDM 130 (201)
T ss_dssp HHHHHHHT-SEEEEEGGGT------TTHHHHHHHHHHT----T--------SEEEEEE-TTS-GG----GGTTTGCCSSE
T ss_pred HHHHHhcCCCEEEEcccch------hCHHHHHHHHHHh----C--------CCEEEEEECCCCch----HHHHHhhhcCE
Confidence 3445667999999999921 2345566666653 4 44666665443322 24567788999
Q ss_pred Eeeeccc
Q 012202 204 VHVMTTG 210 (468)
Q Consensus 204 v~lm~yd 210 (468)
|.+|+-+
T Consensus 131 VlvMsV~ 137 (201)
T PF00834_consen 131 VLVMSVE 137 (201)
T ss_dssp EEEESS-
T ss_pred EEEEEec
Confidence 9999976
No 130
>PHA03265 envelope glycoprotein D; Provisional
Probab=51.49 E-value=11 Score=35.93 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=12.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHhhcc
Q 012202 380 AIVLPITAACILLIGFLLYYFCWMKTL 406 (468)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (468)
.++++.+++.++++++++++++|||+.
T Consensus 351 g~~ig~~i~glv~vg~il~~~~rr~k~ 377 (402)
T PHA03265 351 GISVGLGIAGLVLVGVILYVCLRRKKE 377 (402)
T ss_pred ceEEccchhhhhhhhHHHHHHhhhhhh
Confidence 334444434444445555555555543
No 131
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=51.39 E-value=35 Score=33.36 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCCcEEEEEEeC-CCC--CCCccchHhhc-ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-CCchhhH
Q 012202 77 NFTDTVKIKNPSITTLLSIGG-GNN--PNYSTYSSMSA-SSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-SRDKYNI 151 (468)
Q Consensus 77 ~~~~~~k~~~~~~kvllsigG-~~~--~~~~~~~~~~~-~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-~~~~~~~ 151 (468)
+.+..++. .|+.|+-.|-- +.. .+.+.+..++. +++-.=-+++.+++..+.|||||--|+=|-.+. +++..++
T Consensus 131 DVIDaaHr--NGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHR--NGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhc--CCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 34544443 38888866521 000 01234445543 344445688999999999999999999874432 4555666
Q ss_pred HHHHHHHHHHH
Q 012202 152 GILFKEWRAAV 162 (468)
Q Consensus 152 ~~ll~~lr~~l 162 (468)
.+|+..+++.-
T Consensus 209 ~~f~ly~ke~~ 219 (553)
T COG4724 209 RQFMLYSKEYA 219 (553)
T ss_pred HHHHHHHHhcc
Confidence 66666655433
No 132
>PRK09936 hypothetical protein; Provisional
Probab=51.36 E-value=2.2e+02 Score=26.99 Aligned_cols=107 Identities=7% Similarity=0.127 Sum_probs=60.7
Q ss_pred CCCcEEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHH---
Q 012202 46 ALFTHLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDS--- 122 (468)
Q Consensus 46 ~~~thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~--- 122 (468)
-.|.++|+-|-..... +.... +.-+......++++ |+||.+.+= . +.+.|..+..|++..+.|.+.
T Consensus 50 ~G~~tLivQWt~yG~~----~fg~~-~g~La~~l~~A~~~--Gl~v~vGL~--~--Dp~y~q~~~~d~~~~~~yl~~~l~ 118 (296)
T PRK09936 50 QGFDTLVVQWTRYGDA----DFGGQ-RGWLAKRLAAAQQA--GLKLVVGLY--A--DPEFFMHQKQDGAALESYLNRQLG 118 (296)
T ss_pred cCCcEEEEEeeeccCC----Ccccc-hHHHHHHHHHHHHc--CCEEEEccc--C--ChHHHHHHhcCchhHHHHHHHHHH
Confidence 4699999999887222 12222 33344444455555 899887653 2 356677775576666655442
Q ss_pred -----HHHHHHHcCC--CeeeeeccCCC----CCCchhhHHHHHHHHHHHHH
Q 012202 123 -----SIKIARLYGF--QGLDLSWNSAN----TSRDKYNIGILFKEWRAAVD 163 (468)
Q Consensus 123 -----l~~~l~~~~~--DGvdiD~E~~~----~~~~~~~~~~ll~~lr~~l~ 163 (468)
...+-+..++ +|--|=.|--. +++.+..+...++.+...++
T Consensus 119 ~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 119 ASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 2233344455 99888777321 12344455556666666665
No 133
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=51.15 E-value=2e+02 Score=27.37 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC-CchhhH
Q 012202 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYG-FQGLDLSWNSANTS-RDKYNI 151 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGvdiD~E~~~~~-~~~~~~ 151 (468)
....++..++++ +..++..+-.+..|. -.-+.+.-+.+.+.+++-|+..+ +|||-|+.--.... ...+.=
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P~------G~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E 117 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEPG------GPVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE 117 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-SE------E-B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecCC------CcccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch
Confidence 345566666655 788887774333210 02245667788889999999986 99999998543321 222345
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEeeecccccCCCCCCCCCCCCCCCCCCC
Q 012202 152 GILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVHVMTTGYSKPTWTNFTGAHAALYDPNS 231 (468)
Q Consensus 152 ~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~ 231 (468)
..|++++|+.++..-+ ..++....++ --+++.+.+|.+. +|- +.||.-.+.
T Consensus 118 G~Ll~rvR~~vGp~vp-------I~~tlDlHaN--------vs~~mv~~ad~~~--~yr---------tyPH~D~~e--- 168 (292)
T PF07364_consen 118 GDLLRRVRAIVGPDVP-------IAATLDLHAN--------VSPRMVEAADIIV--GYR---------TYPHIDMYE--- 168 (292)
T ss_dssp HHHHHHHHHHHTTTSE-------EEEEE-TT------------HHHHHH-SEEE--E------------SS---HHH---
T ss_pred HHHHHHHHHHhCCCCe-------EEEEeCCCCC--------ccHHHHHhCCEEE--EcC---------CCCccCHHH---
Confidence 6899999999987521 4445544433 1257888888663 332 223432210
Q ss_pred CCcHHHHHHHHHH---cCCCCCceEEecceeE
Q 012202 232 VSNTEYGITEWIE---EGLSADKLVLCLPFYG 260 (468)
Q Consensus 232 ~~~~~~~~~~~~~---~g~~~~Ki~lglp~yG 260 (468)
.-..+.+.+.. .++.|.+-..-+|+-.
T Consensus 169 --tg~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 169 --TGERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp --HHHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred --HHHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 12233333333 4567777777777644
No 134
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.09 E-value=5.3 Score=38.45 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.7
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHhh
Q 012202 377 LLWAIVLPITAACILLIGFLLYYFCWMK 404 (468)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 404 (468)
.++.|+++++++.+++++++.+++.|||
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 3444555554444444444444444443
No 135
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=50.83 E-value=4.1 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.1
Q ss_pred hcCCCcCCccCCCCCccceeee
Q 012202 445 TDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~f~~~~~iG~GgfG~VYkg~ 466 (468)
.++|....+||+|+||.||++.
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~ 63 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVR 63 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEE
Confidence 4456667899999999999886
No 136
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=50.78 E-value=1.2e+02 Score=29.34 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=40.7
Q ss_pred CCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----CCchhhHHHHHHHHHHH
Q 012202 87 PSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----SRDKYNIGILFKEWRAA 161 (468)
Q Consensus 87 ~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----~~~~~~~~~ll~~lr~~ 161 (468)
.+..++++|+|... + . -.+.-+.|++.+-.+ .. ..|+++|++--|.. .++.+.+.++++++|+.
T Consensus 127 ~~~plivsi~g~~~--~-~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~ 195 (327)
T cd04738 127 RGGPLGVNIGKNKD--T-P------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE 195 (327)
T ss_pred CCCeEEEEEeCCCC--C-c------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence 36889999998542 1 0 112223444433332 33 38999999965543 24556677888888888
Q ss_pred HH
Q 012202 162 VD 163 (468)
Q Consensus 162 l~ 163 (468)
..
T Consensus 196 ~~ 197 (327)
T cd04738 196 RN 197 (327)
T ss_pred Hh
Confidence 75
No 137
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=50.42 E-value=5.7 Score=31.97 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=0.8
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHhhcc
Q 012202 377 LLWAIVLPITAACILLIGFLLYYFCWMKTL 406 (468)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (468)
.++.+..+++++++++.++..++++||.++
T Consensus 77 l~~pi~~sal~v~lVl~llsg~lv~rrcrr 106 (129)
T PF12191_consen 77 LLWPILGSALSVVLVLALLSGFLVWRRCRR 106 (129)
T ss_dssp SS----------------------------
T ss_pred eehhhhhhHHHHHHHHHHHHHHHHHhhhhc
Confidence 333443344433333333333444444433
No 138
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=50.07 E-value=48 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=28.3
Q ss_pred CCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 86 NPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 86 ~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
.....+.+.|+|.+- +.|+ ..+..+++.|+|||||+.--|.
T Consensus 62 ~~e~p~~vQl~g~~p----------------~~~~-~aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGSDP----------------ADLA-EAAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCCCH----------------HHHH-HHHHHHHhcCCCEEEEcCCCCH
Confidence 345678888888442 2333 3455778889999999987664
No 139
>PRK01060 endonuclease IV; Provisional
Probab=49.51 E-value=36 Score=32.01 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
+...++.+.+.|||||+|..+.|..-.....-...++++|+.+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 55678899999999999987755431111223446888888888766
No 140
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=49.49 E-value=33 Score=27.57 Aligned_cols=47 Identities=4% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
.+.+.++|++.|++.--+++++... .+.+.|++.++++-+.+.+-++
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhCC
Confidence 5667788999999988888887765 7888999999999999988654
No 141
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=49.23 E-value=53 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-----------CchhhHHHH
Q 012202 86 NPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTS-----------RDKYNIGIL 154 (468)
Q Consensus 86 ~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~-----------~~~~~~~~l 154 (468)
.....+++.|+|.+- +.|+ ..+..++++|+|+|||+.--|... .+.+...++
T Consensus 52 ~~e~p~~vQl~g~~p----------------~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~i 114 (318)
T TIGR00742 52 PEESPVALQLGGSDP----------------NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADC 114 (318)
T ss_pred CCCCcEEEEEccCCH----------------HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHH
Confidence 345667888887442 2222 345567778999999999766421 344445667
Q ss_pred HHHHHHHH
Q 012202 155 FKEWRAAV 162 (468)
Q Consensus 155 l~~lr~~l 162 (468)
+++++++.
T Consensus 115 v~av~~~~ 122 (318)
T TIGR00742 115 VKAMQEAV 122 (318)
T ss_pred HHHHHHHh
Confidence 77777665
No 142
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=48.61 E-value=1.3e+02 Score=29.29 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=29.8
Q ss_pred CCcEEEEEeEEeeCCCc----EEec-CCcchHHHHHHHHHHHhhCCCcEEEEEEe
Q 012202 47 LFTHLMCGFADVNSTTY----ELSL-SPSDEEQFSNFTDTVKIKNPSITTLLSIG 96 (468)
Q Consensus 47 ~~thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig 96 (468)
.+--|+.....+++.+. .+.+ ++..-+.++.++..+|++ |.|+++-|.
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~ 101 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLW 101 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeecc
Confidence 35566777777766542 1222 223456677777777776 899998663
No 143
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=48.59 E-value=4.1 Score=41.07 Aligned_cols=17 Identities=53% Similarity=0.878 Sum_probs=14.4
Q ss_pred cCCccCCCCCccceeee
Q 012202 450 IENKLGEGGYGPVYKVM 466 (468)
Q Consensus 450 ~~~~iG~GgfG~VYkg~ 466 (468)
.-.+||+|.||.||||.
T Consensus 121 ki~kIGeGTyg~VYkAr 137 (560)
T KOG0600|consen 121 KIEKIGEGTYGQVYKAR 137 (560)
T ss_pred HHHHhcCcchhheeEee
Confidence 34589999999999985
No 144
>PRK14866 hypothetical protein; Provisional
Probab=48.10 E-value=50 Score=33.42 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCcEEEEEEeCCCCCCCccchHhhcCh---------h-hHHHH-HH-HHHHHHHHcCCCeeeeeccCCCCCCchhhHHHH
Q 012202 87 PSITTLLSIGGGNNPNYSTYSSMSASS---------S-SRKSF-ID-SSIKIARLYGFQGLDLSWNSANTSRDKYNIGIL 154 (468)
Q Consensus 87 ~~~kvllsigG~~~~~~~~~~~~~~~~---------~-~r~~f-i~-~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~l 154 (468)
.+.++++.|||..+ ...|..++... . ....+ -. .+.+.+++.+.|.+-|||....+ .+++.+..+
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~~ 259 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQLGALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEAL 259 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccchhccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHHH
Confidence 46789999999876 44444333221 0 00000 01 34455666889999999976544 566555555
Q ss_pred HHHH
Q 012202 155 FKEW 158 (468)
Q Consensus 155 l~~l 158 (468)
++++
T Consensus 260 l~~l 263 (451)
T PRK14866 260 LEEL 263 (451)
T ss_pred HHHC
Confidence 5544
No 145
>PLN02411 12-oxophytodienoate reductase
Probab=47.96 E-value=47 Score=33.20 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEEEEeEEeeCCCcE----Eec-CCcchHHHHHHHHHHHhhCCCcEEEEEE
Q 012202 50 HLMCGFADVNSTTYE----LSL-SPSDEEQFSNFTDTVKIKNPSITTLLSI 95 (468)
Q Consensus 50 hi~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
-||.....+++++.. +.+ ++..-+.++.++..+|++ |.|+++-|
T Consensus 59 LIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 59 FLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred EEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 345555556555321 111 222346667777777766 78888776
No 146
>PHA03210 serine/threonine kinase US3; Provisional
Probab=47.69 E-value=7.9 Score=40.11 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=18.0
Q ss_pred hcCCCcCCccCCCCCccceeee
Q 012202 445 TDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~f~~~~~iG~GgfG~VYkg~ 466 (468)
.+.|.--..||+|+||+||++.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~ 168 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICA 168 (501)
T ss_pred hhccEEEeEecCCCCcceEEEE
Confidence 4557667899999999999864
No 147
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=47.45 E-value=67 Score=26.46 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhh-cChhhHHHHHHHHHHHHHHcCCCeeeee
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMS-ASSSSRKSFIDSSIKIARLYGFQGLDLS 138 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~-~~~~~r~~fi~~l~~~l~~~~~DGvdiD 138 (468)
+-..+.-+.+.+++. |++|++-|==-+ ..|...+ -+.+.|+.+.+.|...++++||.=+|+-
T Consensus 34 Ey~Dl~l~L~~~k~~--g~~~lfVi~PvN----g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s 96 (130)
T PF04914_consen 34 EYDDLQLLLDVCKEL--GIDVLFVIQPVN----GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHHHT--T-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T
T ss_pred cHHHHHHHHHHHHHc--CCceEEEecCCc----HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 456667777788877 788887763221 2233222 3789999999999999999999655553
No 148
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.68 E-value=1.6e+02 Score=28.02 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHhh--CCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHc--CCCeeeeeccCCCC
Q 012202 69 PSDEEQFSNFTDTVKIK--NPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLY--GFQGLDLSWNSANT 144 (468)
Q Consensus 69 ~~~~~~~~~~~~~~k~~--~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~--~~DGvdiD~E~~~~ 144 (468)
+...+.+...+..+++. .++..++++|+|. . +.+++.+..+.+.. +.|+|||++--|..
T Consensus 70 n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 70 NLGLDYYLEYIRTISDGLPGSAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred CcCHHHHHHHHHHHhhhccccCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCC
Confidence 33334444433334332 2467788999873 2 33444343333333 69999999986653
Q ss_pred C------CchhhHHHHHHHHHHHH
Q 012202 145 S------RDKYNIGILFKEWRAAV 162 (468)
Q Consensus 145 ~------~~~~~~~~ll~~lr~~l 162 (468)
. .+.+.+.++++.+|+..
T Consensus 133 ~~~~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 133 PGKPPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred CCcccccCCHHHHHHHHHHHHHhc
Confidence 1 24555666777776665
No 149
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=46.04 E-value=1e+02 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.3
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
.+|++.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 4578888888788888888899999999997654
No 150
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=45.36 E-value=8.5 Score=37.97 Aligned_cols=17 Identities=47% Similarity=0.905 Sum_probs=14.2
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
...||+|+||+||||..
T Consensus 46 ~~~iG~G~~g~V~~~~~ 62 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKW 62 (362)
T ss_pred hhhcccCCceeEEEEEe
Confidence 34599999999999864
No 151
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=45.34 E-value=3.8 Score=40.53 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=17.9
Q ss_pred hcCCCcCCccCCCCCccceeee
Q 012202 445 TDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~f~~~~~iG~GgfG~VYkg~ 466 (468)
.++|....+||+|+||.||++.
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~ 63 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVR 63 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEE
Confidence 3446667899999999999885
No 152
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.17 E-value=32 Score=32.58 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=15.1
Q ss_pred cccceeeeehhHHHHHHHHHHHHHHHHH
Q 012202 374 NKRLLWAIVLPITAACILLIGFLLYYFC 401 (468)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 401 (468)
.+..++.|.++++++++++++++.+++.
T Consensus 225 ~~G~VVlIslAiALG~v~ll~l~Gii~~ 252 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTVFLLVLIGIILA 252 (281)
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555444443
No 153
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=44.57 E-value=2.6e+02 Score=25.91 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=26.7
Q ss_pred ceEEecceeEEeeeecCCCCCCCCCccCCCCCCCCccccHHHHHHHhhc
Q 012202 251 KLVLCLPFYGFAWTLVKPEDNGIGAAATGPALYDDGLVTYKEIKNHIKN 299 (468)
Q Consensus 251 Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~ 299 (468)
-|.+++.-.|+.-++.++....+-.-+.......+|+++..++.++++.
T Consensus 200 ~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~ 248 (253)
T PRK02412 200 LITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEI 248 (253)
T ss_pred EEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHH
Confidence 4667777777655554442211111011112245789999998876653
No 154
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=44.56 E-value=8 Score=41.49 Aligned_cols=18 Identities=33% Similarity=0.750 Sum_probs=15.4
Q ss_pred CcCCccCCCCCccceeee
Q 012202 449 SIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 449 ~~~~~iG~GgfG~VYkg~ 466 (468)
...+.||+|+||+||-|.
T Consensus 997 t~~relg~gsfg~Vy~g~ 1014 (1025)
T KOG4258|consen 997 TLGRELGQGSFGMVYEGN 1014 (1025)
T ss_pred hhhhhhccCccceEEEec
Confidence 347899999999999875
No 155
>PHA03209 serine/threonine kinase US3; Provisional
Probab=43.57 E-value=10 Score=37.27 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.1
Q ss_pred HhcCCCcCCccCCCCCccceeeec
Q 012202 444 ATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
...+|.....||+|+||.||+|..
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~ 87 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATK 87 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEE
Confidence 345688888999999999999863
No 156
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=43.18 E-value=9.1 Score=37.41 Aligned_cols=17 Identities=47% Similarity=0.825 Sum_probs=14.6
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
.++||+|+||.||+|..
T Consensus 79 ~~~lg~G~~g~V~~~~~ 95 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIH 95 (353)
T ss_pred hhhccCCCCeEEEEEEE
Confidence 46899999999999863
No 157
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=42.51 E-value=57 Score=30.66 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHH
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~ 165 (468)
....++.+++.|||||+|+...+........-..-++++++.+.+.
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 3457789999999999998754432111111135677777777775
No 158
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.79 E-value=86 Score=34.51 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHcCCCeeeeecc
Q 012202 116 RKSFIDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 116 r~~fi~~l~~~l~~~~~DGvdiD~E 140 (468)
.+.|++... .+++-|||||+|+--
T Consensus 550 i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 550 RDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEecc
Confidence 355555443 455679999999976
No 159
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=41.66 E-value=79 Score=33.56 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEE---------------eCCCCCC--------CccchHhhc---ChhhHHHHHHHHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSI---------------GGGNNPN--------YSTYSSMSA---SSSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi---------------gG~~~~~--------~~~~~~~~~---~~~~r~~fi~~l~ 124 (468)
..+.++.++..+++. ++-|+|=+ .|..... ...|....- ..+.|.=|+++..
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 678899999988887 89999854 1111100 112222222 4567777899999
Q ss_pred HHHHHcCCCeeeeeccCC---------------CCCCc--hhhHHHHHHHHHHHHHHHhh
Q 012202 125 KIARLYGFQGLDLSWNSA---------------NTSRD--KYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~---------------~~~~~--~~~~~~ll~~lr~~l~~~~~ 167 (468)
-+|++|.+||+-+|--.. ..... .-.-++|++++.+.++...+
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~p 349 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEP 349 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCC
Confidence 999999999997773210 01112 23346788888888877643
No 160
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=41.58 E-value=35 Score=35.73 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.9
Q ss_pred EEEEEEec
Q 012202 175 LILTAKVA 182 (468)
Q Consensus 175 ~~ls~a~~ 182 (468)
..|+.+|-
T Consensus 77 V~i~~aVr 84 (684)
T PF12877_consen 77 VSITYAVR 84 (684)
T ss_pred eEEEEEEe
Confidence 44555544
No 161
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.52 E-value=2.4e+02 Score=27.63 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----CCchhhHH
Q 012202 78 FTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----SRDKYNIG 152 (468)
Q Consensus 78 ~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----~~~~~~~~ 152 (468)
+...+++...++.+++||+|... ......-+.|++.+..+ .. +.|+++|++--|.. .++.+.+.
T Consensus 127 ~~~~l~~~~~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~ 195 (344)
T PRK05286 127 LAERLKKAYRGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALD 195 (344)
T ss_pred HHHHHHHhcCCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHH
Confidence 33334332246889999988432 00122334555444443 33 49999999976543 24556677
Q ss_pred HHHHHHHHHHH
Q 012202 153 ILFKEWRAAVD 163 (468)
Q Consensus 153 ~ll~~lr~~l~ 163 (468)
++++++|+..+
T Consensus 196 eiv~aVr~~~~ 206 (344)
T PRK05286 196 ELLAALKEAQA 206 (344)
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 162
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=41.41 E-value=1.9e+02 Score=28.08 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=39.8
Q ss_pred HHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeecc----CCCCCCchhhHHHH
Q 012202 79 TDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWN----SANTSRDKYNIGIL 154 (468)
Q Consensus 79 ~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E----~~~~~~~~~~~~~l 154 (468)
.+..|+..|++||++-+..... . ...+...+.++.+| +|+|+- ||.-......+..-
T Consensus 160 ~~AVr~~~p~~kV~lH~~~~~~------------~----~~~~~~f~~l~~~g---~d~DviGlSyYP~w~~~l~~l~~~ 220 (332)
T PF07745_consen 160 IKAVREVDPNIKVMLHLANGGD------------N----DLYRWFFDNLKAAG---VDFDVIGLSYYPFWHGTLEDLKNN 220 (332)
T ss_dssp HHHHHTHSSTSEEEEEES-TTS------------H----HHHHHHHHHHHHTT---GG-SEEEEEE-STTST-HHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCc------------h----HHHHHHHHHHHhcC---CCcceEEEecCCCCcchHHHHHHH
Confidence 3477788899999999876443 1 22333444555553 555543 55543456777788
Q ss_pred HHHHHHHHHH
Q 012202 155 FKEWRAAVDL 164 (468)
Q Consensus 155 l~~lr~~l~~ 164 (468)
++.|++++++
T Consensus 221 l~~l~~ry~K 230 (332)
T PF07745_consen 221 LNDLASRYGK 230 (332)
T ss_dssp HHHHHHHHT-
T ss_pred HHHHHHHhCC
Confidence 8888888865
No 163
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.39 E-value=1.3e+02 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.0
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
.++++.|+=+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 3588999999888888888999999999986654
No 164
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.22 E-value=1.3e+02 Score=27.64 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHH
Q 012202 74 QFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGI 153 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ 153 (468)
.+...+..+|++ ++ .++.||+- |..++ .+.-++.-++.+++.|||.|+|.=-... -..+....
T Consensus 42 ~l~eki~la~~~--~V--~v~~GGtl------~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~r 104 (237)
T TIGR03849 42 IVKEKIEMYKDY--GI--KVYPGGTL------FEIAH-----SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCN 104 (237)
T ss_pred HHHHHHHHHHHc--CC--eEeCCccH------HHHHH-----HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHH
Confidence 455666555655 55 55667743 23333 2356667778999999999999843221 12334555
Q ss_pred HHHHHH
Q 012202 154 LFKEWR 159 (468)
Q Consensus 154 ll~~lr 159 (468)
+|+.++
T Consensus 105 lI~~~~ 110 (237)
T TIGR03849 105 LIERAK 110 (237)
T ss_pred HHHHHH
Confidence 565555
No 165
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=40.94 E-value=46 Score=27.65 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=44.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 111 ASSSSRKSFIDSSIKIARLYGFQGLDLS-WNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 111 ~~~~~r~~fi~~l~~~l~~~~~DGvdiD-~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
-+|++-....+.+++++++.+-.-|-|| .||..-..+......|+..||+..-..+
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNN 111 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccC
Confidence 4688888999999999999665567788 5776555677888999999998875544
No 166
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.25 E-value=1.2e+02 Score=29.22 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=26.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012202 111 ASSSSRKSFIDSSIKIARLYGFQGLDLSWNSA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~ 142 (468)
++++.|+=|.+.+.+.+.+.|+||.=+|+..+
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 47888888888787888889999999998644
No 167
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=39.42 E-value=39 Score=30.07 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.8
Q ss_pred HHHHHHhh
Q 012202 291 KEIKNHIK 298 (468)
Q Consensus 291 ~~i~~~~~ 298 (468)
..+|+..+
T Consensus 23 ~~lC~~~~ 30 (202)
T PF06365_consen 23 QVLCRAFK 30 (202)
T ss_pred HHHHHHhc
Confidence 35555443
No 168
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.02 E-value=31 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=16.1
Q ss_pred cceeeeehhHHHHHH-HHHHHHHHHHHHhhcccccc
Q 012202 376 RLLWAIVLPITAACI-LLIGFLLYYFCWMKTLKLKA 410 (468)
Q Consensus 376 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 410 (468)
+.....+++++++++ -++++++++.++.||++++.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444445555554444 44444444555666666553
No 169
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.91 E-value=1.5e+02 Score=28.25 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=49.4
Q ss_pred EecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCC--CCCCccch-----------------HhhcChhhHHHHHHHHHH
Q 012202 65 LSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGN--NPNYSTYS-----------------SMSASSSSRKSFIDSSIK 125 (468)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~--~~~~~~~~-----------------~~~~~~~~r~~fi~~l~~ 125 (468)
.+.....-+....+++.||++ |+|+++.+-=.. .+....+. --..+++.++-|.+.+.+
T Consensus 66 ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 66 YSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred eEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHH
Confidence 344333334456788888876 899998762110 00011111 124578888889999999
Q ss_pred HHHHcCCCeeeeeccCC
Q 012202 126 IARLYGFQGLDLSWNSA 142 (468)
Q Consensus 126 ~l~~~~~DGvdiD~E~~ 142 (468)
.+.+.|+||+=+|+..+
T Consensus 144 ~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 144 PLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHhcCCcEEEecCCCC
Confidence 99999999999998544
No 170
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=38.44 E-value=1.1e+02 Score=28.71 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
-+....+++.+|++ |+|+++.+-- ..|+=|.+.+.+++.+.|+||+=+|+-.|.
T Consensus 65 Fpdp~~~i~~l~~~--g~~~~~~~~P----------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 65 FPNPKSMIDELHDN--GVKLVLWIDP----------------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCCHHHHHHHHHHC--CCEEEEEeCh----------------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 34456788888886 8999998632 116777777777778899999999996554
No 171
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=37.59 E-value=2.6e+02 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=26.0
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSA 142 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~ 142 (468)
+..++++|.|... +.| ..++..+++.|+|+|+|+.-.+
T Consensus 99 ~~pvi~si~g~~~----------------~~~-~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 99 SIPVIASLNGVSA----------------GGW-VDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CCeEEEEeCCCCH----------------HHH-HHHHHHHHhcCCCEEEEeCCCC
Confidence 6778899976321 222 3455566778999999999653
No 172
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=37.54 E-value=69 Score=24.30 Aligned_cols=60 Identities=3% Similarity=0.034 Sum_probs=44.2
Q ss_pred chHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------CCchhhHHHHHHHHHHHHHHH
Q 012202 106 YSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT---------SRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~---------~~~~~~~~~ll~~lr~~l~~~ 165 (468)
...........++....+-+.++.++++=--+|-|+..+ .+++.+|..|+++|...++..
T Consensus 14 ~~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~R 82 (88)
T PF04468_consen 14 IERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCce
Confidence 333444445556677778888899998777777776542 478899999999999999753
No 173
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=37.29 E-value=14 Score=38.65 Aligned_cols=17 Identities=47% Similarity=0.970 Sum_probs=15.3
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
..+||+|-||-||+|+.
T Consensus 394 ~r~iG~GqFGdVy~gvY 410 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVY 410 (974)
T ss_pred HHhhcCCcccceeeeEe
Confidence 67999999999999973
No 174
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.27 E-value=1.3e+02 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=23.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012202 111 ASSSSRKSFIDSSIKIARLYGFQGLDLSWNSA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~ 142 (468)
+|++.|+=|.+.+.. +.+.|+||.=+|+-.|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 488888777666555 4788999999999544
No 175
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=36.70 E-value=15 Score=40.91 Aligned_cols=17 Identities=41% Similarity=0.827 Sum_probs=15.4
Q ss_pred CCccCCCCCccceeeec
Q 012202 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~L 467 (468)
.+.||+|.||.||+|.+
T Consensus 697 ~~~lG~G~FG~VY~g~~ 713 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTY 713 (1025)
T ss_pred eeeeccccccceEEEEE
Confidence 56899999999999985
No 176
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.59 E-value=41 Score=26.64 Aligned_cols=6 Identities=0% Similarity=-0.385 Sum_probs=2.3
Q ss_pred HHHHHH
Q 012202 397 LYYFCW 402 (468)
Q Consensus 397 ~~~~~~ 402 (468)
.++.|+
T Consensus 18 sl~~wr 23 (107)
T PF15330_consen 18 SLLAWR 23 (107)
T ss_pred HHHHHH
Confidence 333343
No 177
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=36.56 E-value=1.2e+02 Score=27.50 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E 140 (468)
........+..++..- ++++++++--... ...+ -.+++.|.++ +..+-+.+.|-|||++.
T Consensus 38 ~~~~~~~~l~~lr~~~-~~piI~T~R~~~e--GG~~---~~~~~~~~~l----l~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 38 SAEDISEQLAELRRSL-DLPIIFTVRTKEE--GGRF---QGSEEEYLEL----LERAIRLGPDYIDIELD 97 (224)
T ss_dssp SHHHHHHHHHHHHHHC-TSEEEEE--BGGG--TSSB---SS-HHHHHHH----HHHHHHHTSSEEEEEGG
T ss_pred ChHHHHHHHHHHHHhC-CCCEEEEeccccc--CCCC---cCCHHHHHHH----HHHHHHcCCCEEEEEcc
Confidence 3445556666777766 8999999831110 0011 1234444443 33444446999999987
No 178
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=36.32 E-value=13 Score=37.24 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.3
Q ss_pred cCCCcCCccCCCCCcccee
Q 012202 446 DRLSIENKLGEGGYGPVYK 464 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYk 464 (468)
+.|..-++||+||||-||-
T Consensus 185 n~F~~~RvlGkGGFGEV~a 203 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCA 203 (591)
T ss_pred cceeeeEEEecccccceeE
Confidence 3488889999999999984
No 179
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=36.28 E-value=3.6e+02 Score=25.09 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHH--------cCCCeeeeeccCC
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARL--------YGFQGLDLSWNSA 142 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~--------~~~DGvdiD~E~~ 142 (468)
....+...+.+|+ +.+++|++==|-=... +... ....++|-++..= +++|||-|| |-|
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg--~R~~----------~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p 116 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYG--SRPL----------SEVKADIDTYASWYGQSEDYGYRVDGIFFD-EAP 116 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEcccc--CCCH----------HHHHHHHHHHhhccccccCCCcccceEEEe-cCC
Confidence 4455666666664 3568998844421111 1222 2333444444443 789999999 644
Q ss_pred CCCCchhhHHHHHHHHHHHHHH
Q 012202 143 NTSRDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 143 ~~~~~~~~~~~ll~~lr~~l~~ 164 (468)
.. . .....+++|.+..+.
T Consensus 117 ~~---~-~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 117 ND---Y-ANLPYYQNLYNYVKS 134 (253)
T ss_pred Cc---H-HHHHHHHHHHHHHHh
Confidence 33 2 455666666666666
No 180
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=35.38 E-value=3.4e+02 Score=26.51 Aligned_cols=86 Identities=8% Similarity=0.071 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhc--------ChhhH-----HHHHHHHHHHHHHcCCCeeee
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSA--------SSSSR-----KSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~--------~~~~r-----~~fi~~l~~~l~~~~~DGvdi 137 (468)
..+....+.+++|++ |+|+-+-...+.. ....+..... .+... +.....+.+++.+|..|.+=+
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDW-HHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSC-CCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHh-cCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 345667788888887 8999877765432 0111111110 11111 245578889999999999999
Q ss_pred eccCCCCCCchhhHHHHHHHHHH
Q 012202 138 SWNSANTSRDKYNIGILFKEWRA 160 (468)
Q Consensus 138 D~E~~~~~~~~~~~~~ll~~lr~ 160 (468)
|.-.+.. .+...+..+...+|+
T Consensus 213 Dg~~~~~-~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 213 DGGWPDP-DEDWDSAELYNWIRK 234 (346)
T ss_dssp ESTTSCC-CTHHHHHHHHHHHHH
T ss_pred cCCCCcc-ccccCHHHHHHHHHH
Confidence 9876643 333344444444433
No 181
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=35.22 E-value=3e+02 Score=26.14 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=35.9
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHc--CCCeeeeeccCCCCC-------CchhhHHHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLY--GFQGLDLSWNSANTS-------RDKYNIGILFKEW 158 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~--~~DGvdiD~E~~~~~-------~~~~~~~~ll~~l 158 (468)
+..++++|.|.+. +.+ ..+++.+++. ++|+|||++--|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~~----------------~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSSV----------------EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCCH----------------HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 4678999987331 222 3345555554 499999998766532 2444556677777
Q ss_pred HHHH
Q 012202 159 RAAV 162 (468)
Q Consensus 159 r~~l 162 (468)
|+..
T Consensus 153 r~~~ 156 (300)
T TIGR01037 153 KDKT 156 (300)
T ss_pred HHhc
Confidence 6654
No 182
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=35.07 E-value=3.7e+02 Score=24.84 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCCCchhhHHHH
Q 012202 76 SNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYG-FQGLDLSWNSANTSRDKYNIGIL 154 (468)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGvdiD~E~~~~~~~~~~~~~l 154 (468)
....+.+|+..|++|+++. ..+- .....+++.+.+-+-.+.+... +|||-|-+-......+...+.+.
T Consensus 106 ~~af~~ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~ 174 (254)
T smart00633 106 EKAFRYAREADPDAKLFYN--DYNT---------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAA 174 (254)
T ss_pred HHHHHHHHHhCCCCEEEEe--ccCC---------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHH
Confidence 3444578888899998885 2221 1112455555554444444433 79998865321111123345555
Q ss_pred HHHHH
Q 012202 155 FKEWR 159 (468)
Q Consensus 155 l~~lr 159 (468)
|+++.
T Consensus 175 l~~~~ 179 (254)
T smart00633 175 LDRFA 179 (254)
T ss_pred HHHHH
Confidence 55543
No 183
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.86 E-value=46 Score=31.12 Aligned_cols=11 Identities=0% Similarity=-0.031 Sum_probs=5.5
Q ss_pred HHHHHHHHHcC
Q 012202 121 DSSIKIARLYG 131 (468)
Q Consensus 121 ~~l~~~l~~~~ 131 (468)
+++-+.+++++
T Consensus 83 ~e~~e~~~k~~ 93 (295)
T TIGR01478 83 EQLQELVEKNR 93 (295)
T ss_pred HHHHHHHHhcC
Confidence 33445555554
No 184
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=34.83 E-value=18 Score=36.85 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.9
Q ss_pred cCCCcCCccCCCCCccceeee
Q 012202 446 DRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYkg~ 466 (468)
+.|.--.+||+|+||.||-+.
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLar 161 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLAR 161 (550)
T ss_pred ccchhheeeccccceeEEEEE
Confidence 446666799999999999764
No 185
>PTZ00370 STEVOR; Provisional
Probab=34.77 E-value=40 Score=31.55 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.7
Q ss_pred HHHHHHHHcC
Q 012202 122 SSIKIARLYG 131 (468)
Q Consensus 122 ~l~~~l~~~~ 131 (468)
++-+.+++++
T Consensus 83 e~~e~~~k~~ 92 (296)
T PTZ00370 83 QLKEVVEKNG 92 (296)
T ss_pred HHHHHHHhcC
Confidence 3444555544
No 186
>PRK08005 epimerase; Validated
Probab=34.56 E-value=1.4e+02 Score=26.96 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=40.5
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
..+.+.|.|-|-|.+|-. .....+++.+|+. | ....+|+-+.+... .+..+.+.+|+|
T Consensus 75 ~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~----G--------~k~GlAlnP~Tp~~----~i~~~l~~vD~V 132 (210)
T PRK08005 75 PWLAAIRPGWIFIHAESV------QNPSEILADIRAI----G--------AKAGLALNPATPLL----PYRYLALQLDAL 132 (210)
T ss_pred HHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc----C--------CcEEEEECCCCCHH----HHHHHHHhcCEE
Confidence 344557999999999932 2344556555554 3 33556654432222 245677889999
Q ss_pred eeeccc
Q 012202 205 HVMTTG 210 (468)
Q Consensus 205 ~lm~yd 210 (468)
.+|+-+
T Consensus 133 lvMsV~ 138 (210)
T PRK08005 133 MIMTSE 138 (210)
T ss_pred EEEEec
Confidence 999986
No 187
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=34.47 E-value=1.7e+02 Score=27.93 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=21.9
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012202 110 SASSSSRKSFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 110 ~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
.++++.|+=+ .+.++-+.++|+||+-+|+-.
T Consensus 129 ftnp~a~~w~-~~~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 129 FTNPDACKWY-KDKLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCCHHHHHHH-HHHHHHHHHhCCcEEecCCCC
Confidence 3467778555 455556667899999999854
No 188
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.07 E-value=63 Score=24.35 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHcCCCeeeeecc----CCCC----------CCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCC
Q 012202 126 IARLYGFQGLDLSWN----SANT----------SRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191 (468)
Q Consensus 126 ~l~~~~~DGvdiD~E----~~~~----------~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
+|.+++.|.--+-|| .|.. ....+.+..+++++...+++..+. ..||+...... .
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~------~pvt~g~~~~~-----~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS------QPVTSGFWGGD-----W 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT------S-EE--B--S------T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC------CcEEeecccCC-----H
Confidence 356667666666665 1320 113466889999999999987655 45666543221 1
Q ss_pred CChhHHh-ccccEEeeecc
Q 012202 192 YPVDSIR-QYLNWVHVMTT 209 (468)
Q Consensus 192 ~~~~~l~-~~~D~v~lm~y 209 (468)
-.+..+. ..+|++.+..|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 1244555 77888876655
No 189
>PRK09505 malS alpha-amylase; Reviewed
Probab=33.63 E-value=87 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD~E 140 (468)
+++.|+.+++.+..||+++|+||.-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 45778888998999999999999999963
No 190
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=33.29 E-value=2.1e+02 Score=31.00 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhCCCcEEE---EEEeC-CCC--CCCccc------------------h-----------HhhcChhhHH
Q 012202 73 EQFSNFTDTVKIKNPSITTL---LSIGG-GNN--PNYSTY------------------S-----------SMSASSSSRK 117 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvl---lsigG-~~~--~~~~~~------------------~-----------~~~~~~~~r~ 117 (468)
..++.++..+|++++++|=+ -++-| |++ |+.... . -.+-+|+.-.
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 47778889999988766644 45533 443 111110 0 1124677788
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccCCCC--CCchhhHHHHHHHHHHHHHHH
Q 012202 118 SFIDSSIKIARLYGFQGLDLSWNSANT--SRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 118 ~fi~~l~~~l~~~~~DGvdiD~E~~~~--~~~~~~~~~ll~~lr~~l~~~ 165 (468)
+|.+.+-++|.+.|+|||-+|-+.... .++...=.++.+...++|...
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S 434 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTAS 434 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999764311 111122244555555555543
No 191
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=33.20 E-value=1.5e+02 Score=30.68 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=54.8
Q ss_pred HHHHHHHHhhCCCcEEEEEE---eCCCCCCC----ccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccC----CCC
Q 012202 76 SNFTDTVKIKNPSITTLLSI---GGGNNPNY----STYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNS----ANT 144 (468)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsi---gG~~~~~~----~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~----~~~ 144 (468)
..+++.+++.+|++|++.|- =+|...+. .....-...+.-++.+++=+++|++.|.=-||+|+-=- |..
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~ 235 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDN 235 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCG
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCC
Confidence 46677888888999999874 11111000 00001111345678999999999999988899887631 221
Q ss_pred --------C---CchhhHHHHHHH-HHHHHHHHhh
Q 012202 145 --------S---RDKYNIGILFKE-WRAAVDLEAR 167 (468)
Q Consensus 145 --------~---~~~~~~~~ll~~-lr~~l~~~~~ 167 (468)
+ =..+....||+. |+-+|++.+.
T Consensus 236 ~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~ 270 (496)
T PF02055_consen 236 GSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGL 270 (496)
T ss_dssp GGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 0 123446788987 9999988753
No 192
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=33.12 E-value=30 Score=34.60 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.2
Q ss_pred cceeeeehhHH
Q 012202 376 RLLWAIVLPIT 386 (468)
Q Consensus 376 ~~~~~i~~~~~ 386 (468)
..|..|.|+++
T Consensus 367 gaIaGIsvavv 377 (397)
T PF03302_consen 367 GAIAGISVAVV 377 (397)
T ss_pred cceeeeeehhH
Confidence 33333433333
No 193
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.07 E-value=64 Score=30.31 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCCch-hhHHHHHHHHHHHHHHHhh
Q 012202 121 DSSIKIARLYGFQGLDLSWNSANTSRDK-YNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 121 ~~l~~~l~~~~~DGvdiD~E~~~~~~~~-~~~~~ll~~lr~~l~~~~~ 167 (468)
...++.+.+.|||||+|....+...-+. .....-++++++.+.+.+.
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCC
Confidence 4466889999999999976432110011 1125678889999998874
No 194
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=32.88 E-value=19 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.645 Sum_probs=18.1
Q ss_pred cccCHHHHHHHhcCCCcCCccCCCCCccceeee
Q 012202 434 REYSLADIEAATDRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 434 ~~~s~~~l~~aT~~f~~~~~iG~GgfG~VYkg~ 466 (468)
..|+-++|+.. ..||.|.||+|+|-.
T Consensus 59 ~~F~~~~Lqdl-------g~iG~G~fG~V~KM~ 84 (361)
T KOG1006|consen 59 HTFTSDNLQDL-------GEIGNGAFGTVNKML 84 (361)
T ss_pred cccccchHHHH-------HHhcCCcchhhhhhh
Confidence 34555555543 378999999999853
No 195
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=32.69 E-value=15 Score=40.74 Aligned_cols=21 Identities=38% Similarity=0.912 Sum_probs=17.8
Q ss_pred cCCCcCCccCCCCCccceeee
Q 012202 446 DRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYkg~ 466 (468)
..|.-...||+|+||+||+|+
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~ 718 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVAT 718 (974)
T ss_pred eeEEEEeeeccccceEEEEee
Confidence 346667899999999999986
No 196
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=32.39 E-value=1.4e+02 Score=27.96 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCC----------CCCchhhHHHHHHHHHHHHHHHhh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSAN----------TSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~----------~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
+.+-.+-|.+.|||||-||+--+- ..........|+.+|++..+..+.
T Consensus 128 i~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 128 IRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred HHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 445555667779999999973211 124456688999999999988753
No 197
>PHA03212 serine/threonine kinase US3; Provisional
Probab=31.97 E-value=18 Score=36.01 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.4
Q ss_pred cCCCcCCccCCCCCccceeee
Q 012202 446 DRLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYkg~ 466 (468)
+.|.--..||+|+||.||++.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~ 112 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACI 112 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEE
Confidence 446667789999999999985
No 198
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=31.03 E-value=4.5e+02 Score=25.59 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----CCchh
Q 012202 75 FSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----SRDKY 149 (468)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----~~~~~ 149 (468)
...+.+.++....++.+.++||+... ......-+.|++.+-.+- . ..|.++|+.--|.. .++.+
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHH
Confidence 34444455554456888999987531 011223345555544443 3 38999999865542 24556
Q ss_pred hHHHHHHHHHHHHH
Q 012202 150 NIGILFKEWRAAVD 163 (468)
Q Consensus 150 ~~~~ll~~lr~~l~ 163 (468)
.+.++++.+|+...
T Consensus 190 ~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 190 ELRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888888776
No 199
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.83 E-value=31 Score=33.45 Aligned_cols=6 Identities=0% Similarity=0.279 Sum_probs=2.3
Q ss_pred HHHhhc
Q 012202 400 FCWMKT 405 (468)
Q Consensus 400 ~~~~~~ 405 (468)
+++||+
T Consensus 333 LRYRRK 338 (353)
T TIGR01477 333 LRYRRK 338 (353)
T ss_pred HHhhhc
Confidence 333443
No 200
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.15 E-value=2e+02 Score=25.47 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
.-+.+-|.+.+-|.+|.. + ....++ +.+++.+ ..+.+|+-+..... ++..+.+.+|++
T Consensus 81 ~~~a~agas~~tfH~E~~---q---~~~~lv----~~ir~~G--------mk~G~alkPgT~Ve----~~~~~~~~~D~v 138 (224)
T KOG3111|consen 81 DQMAKAGASLFTFHYEAT---Q---KPAELV----EKIREKG--------MKVGLALKPGTPVE----DLEPLAEHVDMV 138 (224)
T ss_pred HHHHhcCcceEEEEEeec---c---CHHHHH----HHHHHcC--------CeeeEEeCCCCcHH----HHHHhhccccEE
Confidence 344556999999999942 1 234444 4445555 55777775543332 345667889999
Q ss_pred eeeccc
Q 012202 205 HVMTTG 210 (468)
Q Consensus 205 ~lm~yd 210 (468)
.+||-.
T Consensus 139 LvMtVe 144 (224)
T KOG3111|consen 139 LVMTVE 144 (224)
T ss_pred EEEEec
Confidence 999975
No 201
>PHA03211 serine/threonine kinase US3; Provisional
Probab=29.69 E-value=21 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.0
Q ss_pred cCCCcCCccCCCCCccceeeec
Q 012202 446 DRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYkg~L 467 (468)
.+|.-...||+|+||.||++..
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~ 190 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSH 190 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEE
Confidence 3466677899999999999864
No 202
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=29.06 E-value=82 Score=30.31 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CCchhhHHHHH
Q 012202 87 PSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----------SRDKYNIGILF 155 (468)
Q Consensus 87 ~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~~~ll 155 (468)
...++++=|+|.+ + ......+..+..+++|||||+.-=|.. -.+.+...++|
T Consensus 52 ~~~p~~~Ql~g~~-------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv 114 (309)
T PF01207_consen 52 NERPLIVQLFGND-------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIV 114 (309)
T ss_dssp -T-TEEEEEE-S--------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHH
T ss_pred cccceeEEEeecc-------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHH
Confidence 3457788888843 2 223334556777999999999976652 14566777888
Q ss_pred HHHHHHHH
Q 012202 156 KEWRAAVD 163 (468)
Q Consensus 156 ~~lr~~l~ 163 (468)
+++++.++
T Consensus 115 ~~~~~~~~ 122 (309)
T PF01207_consen 115 KAVRKAVP 122 (309)
T ss_dssp HHHHHH-S
T ss_pred Hhhhcccc
Confidence 88888776
No 203
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=28.76 E-value=3.8e+02 Score=23.05 Aligned_cols=107 Identities=8% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCCcEEEEEeEEeeCCCcEEecCC--------cchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHH
Q 012202 46 ALFTHLMCGFADVNSTTYELSLSP--------SDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRK 117 (468)
Q Consensus 46 ~~~thi~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~ 117 (468)
-.+++||+.+....... ...+. .....+..+.+.+.+. |+||++.++-.. ..|.+ .+.+...
T Consensus 32 ~GidtlIlq~~~~~~~~--~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~~----~~w~~--~~~~~~~ 101 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFA--FYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFDP----DYWDQ--GDLDWEA 101 (166)
T ss_pred cCCcEEEEEEeecCCcc--cCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCCc----hhhhc--cCHHHHH
Confidence 35888988876554321 11111 1234455555555544 899999988532 23332 4444443
Q ss_pred HHHHHHHHHHHH-cC----CCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHH
Q 012202 118 SFIDSSIKIARL-YG----FQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 118 ~fi~~l~~~l~~-~~----~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~ 165 (468)
.+.+.+++-|.+ |+ |.|--|-+|..... .+-..+++.|+..++..
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 333334433322 33 99999999954331 22255666666666554
No 204
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=28.57 E-value=3.1e+02 Score=27.35 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHh------hcChhhHHHH----HHHHHHHHHHcCCCeeeeecc
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSM------SASSSSRKSF----IDSSIKIARLYGFQGLDLSWN 140 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~------~~~~~~r~~f----i~~l~~~l~~~~~DGvdiD~E 140 (468)
..+.+..+.+++|++ |+|+-+-...+.. ....+... -.+...-.+| ..+|.++|.+||-|.+=+|+.
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW-~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDW-FNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHh-CCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 456677888888887 8998887664321 01111100 0011112233 689999999999999999987
Q ss_pred CCCC
Q 012202 141 SANT 144 (468)
Q Consensus 141 ~~~~ 144 (468)
++..
T Consensus 203 ~~~~ 206 (384)
T smart00812 203 WEAP 206 (384)
T ss_pred CCCc
Confidence 6543
No 205
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=28.54 E-value=76 Score=28.65 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=36.9
Q ss_pred EEEEEEeCCCCCCCccchHhhcC-----------hhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHH
Q 012202 90 TTLLSIGGGNNPNYSTYSSMSAS-----------SSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEW 158 (468)
Q Consensus 90 kvllsigG~~~~~~~~~~~~~~~-----------~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~l 158 (468)
++++.|||.-+ ...|..++.+ -....-=-+-|.+.+++.+.+-+-|||....+ .+++.+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999876 4444433321 10011012345566677799999999986554 6666666666654
No 206
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=27.70 E-value=2.9e+02 Score=25.07 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccc-----hHhh----cChhhHHHHHHHHHHHHHHcCCCeeee
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTY-----SSMS----ASSSSRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~-----~~~~----~~~~~r~~fi~~l~~~l~~~~~DGvdi 137 (468)
..+.++.+++.++...|.++|++---+--. .+.+ ...+ +.-+....+++.++++.++-|+++||+
T Consensus 98 y~dNlr~iv~~lks~~~~~riIlitPpp~d--e~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 98 YKDNLRKIVSHLKSLSPETRIILITPPPVD--EEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHhhccCCcceEEEecCCCcC--HHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 345667777788887788888765333222 1111 1111 233455678999999999999999999
No 207
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.38 E-value=37 Score=29.99 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=6.1
Q ss_pred eeeeehhHHHHHH
Q 012202 378 LWAIVLPITAACI 390 (468)
Q Consensus 378 ~~~i~~~~~~~~~ 390 (468)
.++|++.++++++
T Consensus 159 ~laI~lPvvv~~~ 171 (189)
T PF14610_consen 159 ALAIALPVVVVVL 171 (189)
T ss_pred eEEEEccHHHHHH
Confidence 4445555544443
No 208
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=27.26 E-value=69 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=26.4
Q ss_pred cchHhhcChhhHHHHHHHHHHHHHHcCCCe
Q 012202 105 TYSSMSASSSSRKSFIDSSIKIARLYGFQG 134 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~DG 134 (468)
.|.....+++.|++|.++=-.++++|+++.
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt~ 37 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLTP 37 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCCH
Confidence 466778899999999999999999998864
No 209
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=26.96 E-value=1.5e+02 Score=30.44 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHH
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~ 165 (468)
+++.|+.+++.+.-+++++|+||.-||--.-.. ..|+++++.++++.
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~~~~~~ 253 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIEHVREV 253 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHHHHHHh
Confidence 577777777766666667999999999642221 24566666666543
No 210
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=26.76 E-value=6.6e+02 Score=25.23 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=40.6
Q ss_pred EeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEE-EEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCee
Q 012202 57 DVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITT-LLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGL 135 (468)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kv-llsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGv 135 (468)
.|+.+||- +.-++..|.+++..+..+. +... .+-+||... ....|... ...+.+++--..+..+++. ||+=|
T Consensus 49 QVdq~GGY---TGmtP~dF~~~V~~iA~~~-gf~~~~iiLggDHl-GPn~Wq~~-pa~eAM~~A~~li~ayV~A-GF~kI 121 (421)
T PRK15052 49 QVNQFGGY---TGMTPADFREFVYGIADKV-GFPRERIILGGDHL-GPNCWQQE-PADAAMEKSVELVKAYVRA-GFSKI 121 (421)
T ss_pred cccccCCc---CCCCHHHHHHHHHHHHHHc-CCChhcEEeecCCC-CCccccCC-CHHHHHHHHHHHHHHHHHc-CCceE
Confidence 46666652 4556778888887665543 3333 455566433 23334443 2234444444444444443 77777
Q ss_pred eeecc
Q 012202 136 DLSWN 140 (468)
Q Consensus 136 diD~E 140 (468)
.||--
T Consensus 122 HLD~S 126 (421)
T PRK15052 122 HLDAS 126 (421)
T ss_pred EecCC
Confidence 77753
No 211
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=26.71 E-value=1.5e+02 Score=22.00 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=33.6
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
.+.++.|+|++-+-++-. .+.+..+++.+|. .+= .-+++++|.- .++.+++|.+
T Consensus 17 ~~f~~~g~~~~Y~~~~v~-----~~~l~~~~~~~~~-~~~----------~G~~VT~P~K----------~~~~~~~D~~ 70 (83)
T PF08501_consen 17 AAFEALGLDAVYIPFEVE-----PEDLEDFLDALRA-PNF----------RGLNVTMPHK----------EAAIPYLDEL 70 (83)
T ss_dssp HHHHHTTSSEEEEEEETS-----TTCHHHHHHHHHH-TTE----------SEEEE-TTST----------THHGGGSSEE
T ss_pred HHHHHcCCCcEEEEeecC-----HHHHHHHHHHHhc-CCC----------CeeeecchHH----------HHHHHHhccC
Confidence 356888999888877632 3467788887777 222 2366777643 3456666655
No 212
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.54 E-value=1.7e+02 Score=26.71 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEEe
Q 012202 126 IARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWVH 205 (468)
Q Consensus 126 ~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~ 205 (468)
.+.+.|.|=|-|..|-.. .....+++.+|+. + ....+|+-+.+... .+..+.+.+|+|.
T Consensus 77 ~~~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~~----G--------~kaGlalnP~T~~~----~l~~~l~~vD~VL 135 (229)
T PRK09722 77 QLADAGADFITLHPETIN-----GQAFRLIDEIRRA----G--------MKVGLVLNPETPVE----SIKYYIHLLDKIT 135 (229)
T ss_pred HHHHcCCCEEEECccCCc-----chHHHHHHHHHHc----C--------CCEEEEeCCCCCHH----HHHHHHHhcCEEE
Confidence 334459999999998321 1234455555443 3 23555554433222 3456788899999
Q ss_pred eeccc
Q 012202 206 VMTTG 210 (468)
Q Consensus 206 lm~yd 210 (468)
+|+-+
T Consensus 136 vMsV~ 140 (229)
T PRK09722 136 VMTVD 140 (229)
T ss_pred EEEEc
Confidence 99986
No 213
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=26.48 E-value=3.1e+02 Score=25.88 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhh
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYN 150 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~ 150 (468)
....+.++++.+|++ +++|+|-.--... ..... -.++ .+...+.+++.|..||-+||-.. +.+.
T Consensus 71 ~~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~----d~Q~ 134 (273)
T PF10566_consen 71 PDFDLPELVDYAKEK--GVGIWLWYHSETG---GNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR----DDQE 134 (273)
T ss_dssp TT--HHHHHHHHHHT--T-EEEEEEECCHT---TBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS----TSHH
T ss_pred CccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC----CCHH
Confidence 356678888888888 6888876532111 00111 1122 37788899999999999999642 4455
Q ss_pred HHHHHHHHHHHHHH
Q 012202 151 IGILFKEWRAAVDL 164 (468)
Q Consensus 151 ~~~ll~~lr~~l~~ 164 (468)
.+++.+++-+.-.+
T Consensus 135 ~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 135 MVNWYEDILEDAAE 148 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555544
No 214
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=26.34 E-value=3.3e+02 Score=29.81 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHhhCCCcE---EEEEEeC-CCC--CCCccch----------------------------HhhcChhhHH
Q 012202 72 EEQFSNFTDTVKIKNPSIT---TLLSIGG-GNN--PNYSTYS----------------------------SMSASSSSRK 117 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~k---vllsigG-~~~--~~~~~~~----------------------------~~~~~~~~r~ 117 (468)
...++.+++.+|.++|++| |+-++-| |++ |+...+. --+-+|+...
T Consensus 389 ~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~ 468 (865)
T PLN02982 389 GSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAG 468 (865)
T ss_pred cccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHH
Confidence 3578889999999998655 4455533 433 1211110 1123578889
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccC
Q 012202 118 SFIDSSIKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 118 ~fi~~l~~~l~~~~~DGvdiD~E~ 141 (468)
.|.+.+-++|...|+|||-+|-+.
T Consensus 469 ~FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 469 DFYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhh
Confidence 999999999999999999999875
No 215
>PF15069 FAM163: FAM163 family
Probab=26.30 E-value=95 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.143 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012202 383 LPITAACILLIGFLLYY 399 (468)
Q Consensus 383 ~~~~~~~~~~~~~~~~~ 399 (468)
.++++.++|+.+++++.
T Consensus 10 GgILAtVILLcIIaVLC 26 (143)
T PF15069_consen 10 GGILATVILLCIIAVLC 26 (143)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 216
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=26.21 E-value=2.4e+02 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccc-hH----------------------------hhcChhhHHHHHHHH
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTY-SS----------------------------MSASSSSRKSFIDSS 123 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~-~~----------------------------~~~~~~~r~~fi~~l 123 (468)
+....+++.||++ |+|+++.|--.-..++..+ .. -..+++.|+=+.+.+
T Consensus 71 Pdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 71 PGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 3456788888887 7899987632211011111 11 123688998899999
Q ss_pred HHHHHHcCCCeeeeeccC
Q 012202 124 IKIARLYGFQGLDLSWNS 141 (468)
Q Consensus 124 ~~~l~~~~~DGvdiD~E~ 141 (468)
.+++.++|+||+=+|+..
T Consensus 149 ~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 149 KEMLLDLGLSGWMADFGE 166 (317)
T ss_pred HHHhhhcCCcEEEecCCC
Confidence 999899999999999854
No 217
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.12 E-value=1.5e+02 Score=30.37 Aligned_cols=80 Identities=8% Similarity=0.143 Sum_probs=50.4
Q ss_pred EEEEEeEEeeCCCcEEecCCcchHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccch--HhhcChhhHHHHHHHHHHHH
Q 012202 50 HLMCGFADVNSTTYELSLSPSDEEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYS--SMSASSSSRKSFIDSSIKIA 127 (468)
Q Consensus 50 hi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~--~~~~~~~~r~~fi~~l~~~l 127 (468)
.+..+|.+|-++|.. ..+...-.-+.+++..|+++ |++.++++-.|.. ...+. --..+++..+.|++=..-..
T Consensus 71 RfSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dl--P~~L~~~GGW~n~~~v~~F~~YA~~~f 145 (467)
T TIGR01233 71 RISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDT--PEALHSNGDFLNRENIEHFIDYAAFCF 145 (467)
T ss_pred EEecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCC--cHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 345567778777521 23333445667888888887 8999999865554 11111 11235666777777777777
Q ss_pred HHcCCCeee
Q 012202 128 RLYGFQGLD 136 (468)
Q Consensus 128 ~~~~~DGvd 136 (468)
+++| | |.
T Consensus 146 ~~fg-d-Vk 152 (467)
T TIGR01233 146 EEFP-E-VN 152 (467)
T ss_pred HHhC-C-CC
Confidence 8888 7 75
No 218
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=25.98 E-value=1.3e+02 Score=20.60 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCee-eeeccCCCCCCchhhHHHHHHHHHHHH
Q 012202 121 DSSIKIARLYGFQGL-DLSWNSANTSRDKYNIGILFKEWRAAV 162 (468)
Q Consensus 121 ~~l~~~l~~~~~DGv-diD~E~~~~~~~~~~~~~ll~~lr~~l 162 (468)
+.+++.|+..||||. .|.||-+.- +....+..=++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHhc
Confidence 357888999999995 677775443 33344444444444444
No 219
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.81 E-value=27 Score=36.82 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.9
Q ss_pred cCCCcCCccCCCCCccceeeec
Q 012202 446 DRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 446 ~~f~~~~~iG~GgfG~VYkg~L 467 (468)
.+|.--.+||+|.||+|+.+.+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~ 389 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAEL 389 (694)
T ss_pred cceEEEEEeccCcCceEEEEEE
Confidence 4466677999999999998875
No 220
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.58 E-value=1.1e+02 Score=28.10 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
+...++.+.+.|||||+|.+.+ . .-++++++.+.+.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHHcC
Confidence 5567788899999999997632 1 12577788887766
No 221
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.37 E-value=2.7e+02 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCeeeeeccCCCC-----------CCchhhHHHHHHHHHHHH
Q 012202 123 SIKIARLYGFQGLDLSWNSANT-----------SRDKYNIGILFKEWRAAV 162 (468)
Q Consensus 123 l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~~~ll~~lr~~l 162 (468)
.++.+.+.|+|+|||+.--|.. -.+.+...++++++|+++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc
Confidence 4455677899999999976641 123444556666666554
No 222
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=25.36 E-value=1.6e+02 Score=27.45 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 122 SSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 122 ~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
..+..+.+.|+|+|+|..+.|..-.....-...++++++.+.+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 58 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN 58 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 456778889999999999877431111222356888888888766
No 223
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.35 E-value=2.8e+02 Score=25.35 Aligned_cols=66 Identities=6% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
..+.+.|.|-|-|..|-. ......++.+|+. +.+ ....+|+-+.+... .+..+.+.+|+|
T Consensus 85 ~~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~----g~~------~kaGlalnP~Tp~~----~i~~~l~~vD~V 144 (228)
T PRK08091 85 KACVAAGADIVTLQVEQT------HDLALTIEWLAKQ----KTT------VLIGLCLCPETPIS----LLEPYLDQIDLI 144 (228)
T ss_pred HHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC----CCC------ceEEEEECCCCCHH----HHHHHHhhcCEE
Confidence 344556999999999942 1344555555543 321 24556654433222 345678889999
Q ss_pred eeeccc
Q 012202 205 HVMTTG 210 (468)
Q Consensus 205 ~lm~yd 210 (468)
.+||-+
T Consensus 145 LiMtV~ 150 (228)
T PRK08091 145 QILTLD 150 (228)
T ss_pred EEEEEC
Confidence 999986
No 224
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=24.91 E-value=5e+02 Score=23.71 Aligned_cols=55 Identities=5% Similarity=0.056 Sum_probs=34.6
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CCchhhHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----------SRDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~~~ll~ 156 (468)
+..+.+.|.|.+- .....+++.++++ .|+|||+..-|.. -.+.+...++++
T Consensus 72 ~~p~~vqi~g~~~-----------------~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~ 133 (233)
T cd02911 72 NVLVGVNVRSSSL-----------------EPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIK 133 (233)
T ss_pred CCeEEEEecCCCH-----------------HHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHH
Confidence 5688888887432 1223455566665 5999999985542 124455667777
Q ss_pred HHHH
Q 012202 157 EWRA 160 (468)
Q Consensus 157 ~lr~ 160 (468)
++|+
T Consensus 134 avr~ 137 (233)
T cd02911 134 ALKE 137 (233)
T ss_pred HHHh
Confidence 7765
No 225
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=24.81 E-value=15 Score=36.71 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=13.4
Q ss_pred CccCCCCCccceeee
Q 012202 452 NKLGEGGYGPVYKVM 466 (468)
Q Consensus 452 ~~iG~GgfG~VYkg~ 466 (468)
++||+|||.-|||+.
T Consensus 469 hLLGrGGFSEVyKAF 483 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAF 483 (775)
T ss_pred HHhccccHHHHHHhc
Confidence 578999999999984
No 226
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=24.69 E-value=3.9e+02 Score=31.29 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEE-------eCCCC--------CCCccc-------------h-----HhhcChhhHH
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSI-------GGGNN--------PNYSTY-------------S-----SMSASSSSRK 117 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi-------gG~~~--------~~~~~~-------------~-----~~~~~~~~r~ 117 (468)
....++.+++.+|++ |++|+|-+ ++... .++..+ . --+.++..|+
T Consensus 245 ~~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~ 322 (1221)
T PRK14510 245 GEEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILR 322 (1221)
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHH
Confidence 346788899888877 89999864 11000 000000 0 0122566777
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHH
Q 012202 118 SFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 118 ~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~ 165 (468)
-.++++.-+++ +++||.-||--......+ ..|+++++..+++.
T Consensus 323 ~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 323 LPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred HHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 77788888888 999999999753221111 23555666665554
No 227
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=24.67 E-value=1.3e+02 Score=28.20 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=32.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 112 SSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 112 ~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
++..|+.+++ ++++..++++||+-||--.-.. ..++++++.+++...
T Consensus 143 n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 143 NPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEEK 189 (316)
T ss_dssp SHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhhc
Confidence 5666776666 6666666779999999642221 277788888877754
No 228
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=24.16 E-value=3e+02 Score=26.77 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeccCCCC----------CCchhhHHHHHHHHHHHHHHH
Q 012202 117 KSFIDSSIKIARLYGFQGLDLSWNSANT----------SRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 117 ~~fi~~l~~~l~~~~~DGvdiD~E~~~~----------~~~~~~~~~ll~~lr~~l~~~ 165 (468)
..+++.++..+.+.|+.||.+||.--.. ..+...+..++..+++.+...
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPR 148 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999973221 245567888888888866543
No 229
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.15 E-value=1.3e+02 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhh-HHHHHHHHHHHHHHHhh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYN-IGILFKEWRAAVDLEAR 167 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~-~~~ll~~lr~~l~~~~~ 167 (468)
....++.+++.|||||+|............. -...++++++.+.+.+.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl 71 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGF 71 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCC
Confidence 3456778899999999998653211000011 23568889999988763
No 230
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=23.88 E-value=4.3e+02 Score=25.71 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEe-----CCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012202 75 FSNFTDTVKIKNPSITTLLSIG-----GGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSAN 143 (468)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsig-----G~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~ 143 (468)
...+++.+++. ++|+++.+- |...+....|... .+++.|+=+ .+..+.+.+.|+||+=+|+..|.
T Consensus 66 p~~mv~~L~~~--G~klv~~i~P~i~~g~~~~~~~~~pDf-tnp~ar~wW-~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 66 PKEMFDNLHNK--GLKCSTNITPVISYGGGLGSPGLYPDL-GRPDVREWW-GNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred HHHHHHHHHHC--CCeEEEEecCceecCccCCCCceeeCC-CCHHHHHHH-HHHHHHHHhCCCceeecCCCCcc
Confidence 35677788876 788876541 1111123345443 478888855 55566666779999999986554
No 231
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.74 E-value=4e+02 Score=23.29 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEEEe-CCCCCCCccchHh-hcChhhHHHHHHHHHHHHHHcCCCee
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLSIG-GGNNPNYSTYSSM-SASSSSRKSFIDSSIKIARLYGFQGL 135 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig-G~~~~~~~~~~~~-~~~~~~r~~fi~~l~~~l~~~~~DGv 135 (468)
-......+++.+++++|++.|++.=- .... ..+... -.......+.++.+++-+++.|-..|
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~---~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl 139 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYPA---GYFDNSRGETVEEFREALREAVEQLRKEGDKNL 139 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----TT---TTS--TTS--HHHHHHHHHHHHHHHHHTT-TTE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccc---cccCchHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 45677789999999999999886531 1111 122221 11233445566667777777665544
No 232
>PRK09989 hypothetical protein; Provisional
Probab=23.53 E-value=1.6e+02 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHh
Q 012202 121 DSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 121 ~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
...++.++++|||||+|-..+. . -.+++++.+.+.+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~---~-------~~~~~~~~l~~~G 53 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD---Y-------STLQIQKQLEQNH 53 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc---C-------CHHHHHHHHHHcC
Confidence 4567889999999999954321 1 1578888898876
No 233
>PRK12677 xylose isomerase; Provisional
Probab=23.46 E-value=2.3e+02 Score=28.20 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCeeeeeccC--CCCCCchhhHHHHHHHHHHHHHHHhh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNS--ANTSRDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~--~~~~~~~~~~~~ll~~lr~~l~~~~~ 167 (468)
....+..+.+.||+||+|..+. |.. .+...-...++++++.+...+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~-~~~~~~~~~~~~lk~~l~~~GL 81 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFG-ATDAERDRIIKRFKKALDETGL 81 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCC-CChhhhHHHHHHHHHHHHHcCC
Confidence 4567788999999999998652 221 1111123468899999988773
No 234
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=23.43 E-value=71 Score=29.99 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=7.9
Q ss_pred hccccEEeeecccccCCC
Q 012202 198 RQYLNWVHVMTTGYSKPT 215 (468)
Q Consensus 198 ~~~~D~v~lm~yd~~~~~ 215 (468)
..++-++.|---|+. .|
T Consensus 78 ~P~v~Rl~lVyqnlG-Nw 94 (278)
T PF06697_consen 78 QPYVERLVLVYQNLG-NW 94 (278)
T ss_pred cCcceEEEEEEeccC-cc
Confidence 344555544444443 45
No 235
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=23.36 E-value=56 Score=31.84 Aligned_cols=26 Identities=46% Similarity=0.598 Sum_probs=20.5
Q ss_pred ccCHHHHHHHhcCCCcCCccCCCCCccceeeec
Q 012202 435 EYSLADIEAATDRLSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 435 ~~s~~~l~~aT~~f~~~~~iG~GgfG~VYkg~L 467 (468)
.++..||+. -+.||+|..|+|||+..
T Consensus 75 ~i~~~dle~-------~~~lG~G~gG~V~kv~H 100 (364)
T KOG0581|consen 75 GISLSDLER-------LGVLGSGNGGTVYKVRH 100 (364)
T ss_pred ccCHHHhhh-------hhhcccCCCcEEEEEEE
Confidence 467777765 35899999999999863
No 236
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.28 E-value=2.6e+02 Score=25.43 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=40.4
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
..+.+.|.|=|-|..|-. .....+++.+|+. + ....+++-+..... .+..+.+.+|+|
T Consensus 79 ~~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~----g--------~k~GlalnP~T~~~----~i~~~l~~vD~V 136 (223)
T PRK08745 79 PDFADAGATTISFHPEAS------RHVHRTIQLIKSH----G--------CQAGLVLNPATPVD----ILDWVLPELDLV 136 (223)
T ss_pred HHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC----C--------CceeEEeCCCCCHH----HHHHHHhhcCEE
Confidence 334446999999999942 2345666666655 3 23445554332222 345678899999
Q ss_pred eeeccc
Q 012202 205 HVMTTG 210 (468)
Q Consensus 205 ~lm~yd 210 (468)
.+||-+
T Consensus 137 lvMtV~ 142 (223)
T PRK08745 137 LVMSVN 142 (223)
T ss_pred EEEEEC
Confidence 999986
No 237
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=23.17 E-value=32 Score=35.34 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=13.9
Q ss_pred CCccCCCCCccceeee
Q 012202 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~~~iG~GgfG~VYkg~ 466 (468)
+.+||+|-||+||-|.
T Consensus 569 devLGSGQFG~VYgg~ 584 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGK 584 (888)
T ss_pred HhhccCCcceeeecce
Confidence 4699999999999774
No 238
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=23.10 E-value=98 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEeC
Q 012202 73 EQFSNFTDTVKIKNPSITTLLSIGG 97 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigG 97 (468)
..+..+++.+++.||++||+++|.=
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSP 176 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSP 176 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEecc
Confidence 4456777889999999999999863
No 239
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1.5e+02 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=34.3
Q ss_pred hhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHH
Q 012202 109 MSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKE 157 (468)
Q Consensus 109 ~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~ 157 (468)
+-.+++..++.|.|-+..|-+.|.-|++|-+|-| +-+..+..+++.
T Consensus 143 ~~k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~ 188 (191)
T COG3410 143 PEKNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRG 188 (191)
T ss_pred hhhCHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhh
Confidence 3346778889999999999999999999999865 233444444443
No 240
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=22.33 E-value=2.5e+02 Score=29.40 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=36.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeeeeec-cCCC----C-CCchhhHHHHHHHHHHHHHHHh
Q 012202 111 ASSSSRKSFIDSSIKIARLYGFQGLDLSW-NSAN----T-SRDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 111 ~~~~~r~~fi~~l~~~l~~~~~DGvdiD~-E~~~----~-~~~~~~~~~ll~~lr~~l~~~~ 166 (468)
.+++.|+.+++.+..+++ +|+||.-||- .+.. . ..+...-..|+++++..+++..
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~ 231 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREY 231 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhC
Confidence 367778888877777776 8999999994 2211 1 0111122468899999987754
No 241
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.83 E-value=8.3e+02 Score=24.58 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=50.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCC---CChh---HHhccccEEeeecccccCCCCCCCC
Q 012202 147 DKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA---YPVD---SIRQYLNWVHVMTTGYSKPTWTNFT 220 (468)
Q Consensus 147 ~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~---~~~~---~l~~~~D~v~lm~yd~~~~~~~~~~ 220 (468)
..+.+..+|..+|.+|.+.+.. ......+.+.+.++..+.... |+.+ +|.+.++..-.|.|.-
T Consensus 189 s~e~~~~ti~~h~~af~~~GL~--~aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~~~~~lvfEa--------- 257 (420)
T TIGR02810 189 TPEAARATLRAHRKAFAARGLE--DAWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVIDNTPGLVFEA--------- 257 (420)
T ss_pred CHHHHHHHHHHHHHHHHHcCch--hhhccceEEEecCCeeECCCceeecCHHHHHHHHHHHHhCCCceeec---------
Confidence 3456777777787888776643 000114555555544332222 4332 2233333222222221
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecce
Q 012202 221 GAHAALYDPNSVSNTEYGITEWIEEGLSADKLVLCLPF 258 (468)
Q Consensus 221 ~~~apl~~~~~~~~~~~~~~~~~~~g~~~~Ki~lglp~ 258 (468)
+++++..+.++..++..|+..-|+--++.|
T Consensus 258 --------HSTDYQt~~al~~lv~dgfaiLKVGPalTf 287 (420)
T TIGR02810 258 --------HSTDYQTPAALRALVRDHFAILKVGPALTF 287 (420)
T ss_pred --------CCccCCCHHHHHHHHhcCceeeeechhHhH
Confidence 333456788889999999988887665543
No 242
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=21.53 E-value=4.9e+02 Score=21.85 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHhhCCCcEEEEE-EeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeee
Q 012202 71 DEEQFSNFTDTVKIKNPSITTLLS-IGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLS 138 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvlls-igG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD 138 (468)
....+..+++.+++++|+.+|++. +-=... .. . .........+++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~--~~-~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE--ED-E-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc--cc-c-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 456677788888888899987753 221111 00 0 0111235667788888888888886666655
No 243
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.43 E-value=1.6e+02 Score=27.48 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCCchhhH-HHHHHHHHHHHHHHhh
Q 012202 120 IDSSIKIARLYGFQGLDLSWNSANTSRDKYNI-GILFKEWRAAVDLEAR 167 (468)
Q Consensus 120 i~~l~~~l~~~~~DGvdiD~E~~~~~~~~~~~-~~ll~~lr~~l~~~~~ 167 (468)
....++.+.+.|||||+|....+........+ ..-++++++.+.+.+.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl 66 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGV 66 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCC
Confidence 35578899999999999975432110000111 2458899999999873
No 244
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=21.42 E-value=3.8e+02 Score=24.01 Aligned_cols=91 Identities=8% Similarity=-0.022 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeeeeeccCC-CCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCC
Q 012202 113 SSSRKSFIDSSIKIARLYGFQGLDLSWNSA-NTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAA 191 (468)
Q Consensus 113 ~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~-~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
+.....+...+.+.+++.+.+-+-||==.+ ....+...+..++..+...+++.+.. ..++...+... ..
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t------~llt~~~~~~~-~~--- 166 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVT------TLLTSEMPSGS-ED--- 166 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEE------EEEEEEESSSS-SS---
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCE------EEEEEccccCc-cc---
Confidence 345678999999999999999999993111 12245567888999999999887643 45555543211 11
Q ss_pred CChhHHhc-cccEEeeecccccC
Q 012202 192 YPVDSIRQ-YLNWVHVMTTGYSK 213 (468)
Q Consensus 192 ~~~~~l~~-~~D~v~lm~yd~~~ 213 (468)
.....+.. .+|-|..+.+...+
T Consensus 167 ~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 167 DGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccchhhhcccEEEEEEEEeeC
Confidence 11234556 79999998887654
No 245
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.36 E-value=6.4e+02 Score=23.11 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhc-cc
Q 012202 123 SIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQ-YL 201 (468)
Q Consensus 123 l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~~ 201 (468)
.++.+.+.|.||+-+--..+ +-++++.+..++.+.. ..+.+.+..... .++.+.+ ..
T Consensus 96 fi~~~~~aG~~giiipDl~~----------ee~~~~~~~~~~~g~~--------~i~~i~P~T~~~----~i~~i~~~~~ 153 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLPP----------EEAEEFREAAKEYGLD--------LIFLVAPTTPDE----RIKKIAELAS 153 (242)
T ss_pred HHHHHHHCCCcEEEECCCCH----------HHHHHHHHHHHHcCCc--------EEEEeCCCCCHH----HHHHHHhhCC
Confidence 45556677999998843211 1345666666666533 333333222111 2345666 78
Q ss_pred cEEeeeccc
Q 012202 202 NWVHVMTTG 210 (468)
Q Consensus 202 D~v~lm~yd 210 (468)
|+|.+|+..
T Consensus 154 ~~vy~~s~~ 162 (242)
T cd04724 154 GFIYYVSRT 162 (242)
T ss_pred CCEEEEeCC
Confidence 999999873
No 246
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.29 E-value=59 Score=22.42 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=8.3
Q ss_pred CcchhHHHHHHHH
Q 012202 1 MASKIIILVLHIF 13 (468)
Q Consensus 1 M~~~~~~~~~~~~ 13 (468)
|++|++++.++-+
T Consensus 1 MA~Kl~vialLC~ 13 (65)
T PF10731_consen 1 MASKLIVIALLCV 13 (65)
T ss_pred CcchhhHHHHHHH
Confidence 8888876544433
No 247
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=21.29 E-value=3.1e+02 Score=24.68 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHH
Q 012202 123 SIKIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 123 l~~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~ 164 (468)
+++.+...|+|-|-||+|....+.+++.=...++++-..+..
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~ 54 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRA 54 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcc
Confidence 455666789999999999876555554444444444444443
No 248
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.97 E-value=3.9e+02 Score=24.25 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeccCcccccCCCChhHHhccccEE
Q 012202 125 KIARLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLEARNNSSQSQLILTAKVAHSPLSTAAAYPVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
...-+.|.|-|-+..|. + ...-..|+.+|+. + ....+++-+.+... .++-+.+.+|+|
T Consensus 78 ~~fa~agad~It~H~E~--~----~~~~r~i~~Ik~~----G--------~kaGv~lnP~Tp~~----~i~~~l~~vD~V 135 (220)
T COG0036 78 EAFAKAGADIITFHAEA--T----EHIHRTIQLIKEL----G--------VKAGLVLNPATPLE----ALEPVLDDVDLV 135 (220)
T ss_pred HHHHHhCCCEEEEEecc--C----cCHHHHHHHHHHc----C--------CeEEEEECCCCCHH----HHHHHHhhCCEE
Confidence 34445689999999992 1 2455666666655 3 33444443322222 245677889999
Q ss_pred eeeccc
Q 012202 205 HVMTTG 210 (468)
Q Consensus 205 ~lm~yd 210 (468)
.+||-+
T Consensus 136 llMsVn 141 (220)
T COG0036 136 LLMSVN 141 (220)
T ss_pred EEEeEC
Confidence 999986
No 249
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.71 E-value=46 Score=29.03 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.4
Q ss_pred ceeeeehhHHHH
Q 012202 377 LLWAIVLPITAA 388 (468)
Q Consensus 377 ~~~~i~~~~~~~ 388 (468)
+++.|+++++++
T Consensus 80 iivgvi~~Vi~I 91 (179)
T PF13908_consen 80 IIVGVICGVIAI 91 (179)
T ss_pred eeeehhhHHHHH
Confidence 444454444433
No 250
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=20.62 E-value=6e+02 Score=23.26 Aligned_cols=54 Identities=2% Similarity=-0.066 Sum_probs=35.3
Q ss_pred CcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CCchhhHHHHHH
Q 012202 88 SITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDLSWNSANT-----------SRDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdiD~E~~~~-----------~~~~~~~~~ll~ 156 (468)
+.+++++|++.+- +.+ ..+++.+.+ ++|+|||+.--|.. -.+.+.+.++++
T Consensus 67 ~~~vivnv~~~~~----------------ee~-~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 67 RALVSVNVRFVDL----------------EEA-YDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred cCCEEEEEecCCH----------------HHH-HHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 5689999998542 112 223444545 69999999876652 135666777777
Q ss_pred HHH
Q 012202 157 EWR 159 (468)
Q Consensus 157 ~lr 159 (468)
.++
T Consensus 129 av~ 131 (231)
T TIGR00736 129 KMK 131 (231)
T ss_pred HHH
Confidence 777
No 251
>TIGR02368 dimeth_PyL dimethylamine:corrinoid methyltransferase. This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of M. acetivorans, M. barkeri, and M. Mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=20.48 E-value=3.8e+02 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHcCCCeeeeeccCCCCCCchhhHHHHHHHHHHHHHHH
Q 012202 128 RLYGFQGLDLSWNSANTSRDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 128 ~~~~~DGvdiD~E~~~~~~~~~~~~~ll~~lr~~l~~~ 165 (468)
-.-|.|||++|-.-...+.|...-..-+..||..|++-
T Consensus 201 fasgadgvnfdttaaagdadmygtlhaiealrkefpem 238 (466)
T TIGR02368 201 FASGADGVNFDTTAAAGDADMYGTLHAIEALRKEFPEM 238 (466)
T ss_pred HhccCCcccccccccccchhhhhhHHHHHHHHHhchHH
Confidence 33589999999764444345555567789999999874
No 252
>PHA03207 serine/threonine kinase US3; Provisional
Probab=20.29 E-value=40 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.4
Q ss_pred CCCcCCccCCCCCccceeee
Q 012202 447 RLSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 447 ~f~~~~~iG~GgfG~VYkg~ 466 (468)
.|.--..||+|+||.||++.
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~ 112 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCT 112 (392)
T ss_pred ceEEEEeecCCCCeEEEEEE
Confidence 35556789999999999874
No 253
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.27 E-value=5e+02 Score=22.13 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCccchHhhcChhhHHHHHHHHHHHHHHcCCCeeee
Q 012202 72 EEQFSNFTDTVKIKNPSITTLLSIGGGNNPNYSTYSSMSASSSSRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigG~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGvdi 137 (468)
...+..+++.+++.+|+.++++.---... .... ....+....+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~--~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY--YGDG-GFINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc--ccCC-CccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 45677888888888888888765211111 0101 112233444567777778888888765554
No 254
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.02 E-value=67 Score=28.73 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=13.7
Q ss_pred ccceeeeehhHH-HHHHHHHHHHHHHHHH
Q 012202 375 KRLLWAIVLPIT-AACILLIGFLLYYFCW 402 (468)
Q Consensus 375 ~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 402 (468)
+..+ .|+++++ +++.+++++++..++|
T Consensus 34 ~d~~-~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 34 KDYV-KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ccce-eeeeeeecchhhhHHHHHHHHHHH
Confidence 4454 4555544 4455555555544444
Done!