BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012204
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 553 bits (1425), Expect = e-158, Method: Compositional matrix adjust.
Identities = 255/432 (59%), Positives = 331/432 (76%), Gaps = 1/432 (0%)
Query: 32 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 91
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 92 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 151
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 211
P +V +D P HPM+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 212 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 270
++P VAA +Y+ +Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 271 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 331 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 450
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 451 RPKSVTLDWIEK 462
RPKS++ D + K
Sbjct: 421 RPKSMSTDGLIK 432
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 255/432 (59%), Positives = 331/432 (76%), Gaps = 1/432 (0%)
Query: 32 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 91
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 92 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 151
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 211
P +V +D P HPM+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 212 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 270
++P VAA +Y+ +Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 271 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 331 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 450
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 451 RPKSVTLDWIEK 462
RPKS++ D + K
Sbjct: 421 RPKSMSTDGLIK 432
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/432 (58%), Positives = 326/432 (75%), Gaps = 1/432 (0%)
Query: 32 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 91
++ +L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDP 60
Query: 92 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 151
DEGIRFRG SIPECQKLLP A TG++P+ EQV +SKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAAL 120
Query: 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 211
P +V +D P HPM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIA 180
Query: 212 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 270
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEG 240
Query: 271 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEK 300
Query: 331 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNV 360
Query: 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 450
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 451 RPKSVTLDWIEK 462
RPKS++ +EK
Sbjct: 421 RPKSMSTAGLEK 432
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/428 (59%), Positives = 324/428 (75%), Gaps = 1/428 (0%)
Query: 36 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI 95
+L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGI
Sbjct: 3 NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGI 62
Query: 96 RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYV 155
RFRG SIPECQKLLP A TG++P+ EQV +SKE RA +P +V
Sbjct: 63 RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHV 122
Query: 156 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 215
+D P HPM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P
Sbjct: 123 VTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPC 182
Query: 216 VAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 274
VAA +Y+ +Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVS
Sbjct: 183 VAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242
Query: 275 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 334
AHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY
Sbjct: 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDY 302
Query: 335 VWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 394
+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L +
Sbjct: 303 IWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQ 362
Query: 395 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKS 454
GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS
Sbjct: 363 GKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKS 422
Query: 455 VTLDWIEK 462
++ +EK
Sbjct: 423 MSTAGLEK 430
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 245/428 (57%), Positives = 310/428 (72%), Gaps = 1/428 (0%)
Query: 32 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 91
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 92 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 151
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 120
Query: 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 211
P +V +D P HPM+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 180
Query: 212 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 270
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 271 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ +
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADAS 300
Query: 331 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 360
Query: 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 450
L + G NPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 451 RPKSVTLD 458
RPKS++ D
Sbjct: 421 RPKSMSTD 428
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/428 (57%), Positives = 313/428 (73%), Gaps = 5/428 (1%)
Query: 32 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 91
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 92 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 151
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGG-GGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 119
Query: 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 211
P +V +D P HPM+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA
Sbjct: 120 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 179
Query: 212 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 270
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 180 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 239
Query: 271 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ + G + +
Sbjct: 240 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS--- 296
Query: 331 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 297 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 356
Query: 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 450
L + G NPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 357 LLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 416
Query: 451 RPKSVTLD 458
RPKS++ D
Sbjct: 417 RPKSMSTD 424
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 165/350 (47%), Gaps = 40/350 (11%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
G++P+ EQV +E+ ++ V ++V AI A+P HPM+ +GV L +
Sbjct: 101 GELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH------ 154
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 249
IH + E E + N++A++ +AA Y+ + + PK + Y NF +M+
Sbjct: 155 ---IHNGQK-ESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKME-YGYAENFLYMMFA 209
Query: 250 DD----PKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 303
DD P L + M +H+DHE N S T L S + PY + A + L GP
Sbjct: 210 DDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGITALWGPA 268
Query: 304 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYT 361
HG AN+ VL ++ E G +TE + Y+ K + + GFGH V + TDPR T
Sbjct: 269 HGGANEAVL----KMLSEIG---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRAT 321
Query: 362 -----CQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFG 416
C+ A D+PL + KL E+ + + + + NVD +SG++L G
Sbjct: 322 AMKKNCEEILAKLGHSDNPLLTVAKKLEEIA--LQDEFFIERKLFSNVDFYSGIILKAMG 379
Query: 417 LAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE---RPKSVTLDWIEKN 463
+ E +T +F ++R+ G SQ W + P + RP+ + +N
Sbjct: 380 IPE-DMFTAIFALARTSGWISQ--WIEMVNDPAQKIGRPRQLYTGATNRN 426
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 35/319 (10%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
GK+P++E+++ ++LR+ +PD++ K + + A PM + V L
Sbjct: 53 GKLPNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLL---------- 102
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 249
GI SK E T + LI++ P + A Y R+ K II D L + NF +ML
Sbjct: 103 --GIEDSKNDERTDIKGIKLISKFPTIVA-NYARLRKGLDIIEPDPKLSHSENFLYMLYG 159
Query: 250 DDPKMLELMRLYVTI--HSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 307
D P ++ + VT+ H DHE N S +VAS SD Y S A ++ L GPLHG A
Sbjct: 160 DRPNEIKSKAMDVTLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGA 218
Query: 308 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 367
N E L K E G + E++ DY+ L++ + + GFGH V + DPR +++A
Sbjct: 219 NYEALKMFK----EIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYA 271
Query: 368 LKHLPDD------PLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 421
K L + L+Q+ K+ E+ + LG K +PNVD S ++ G E
Sbjct: 272 -KLLAEKEGGEIYTLYQIAEKVEEIG---IKYLGP-KGIYPNVDFFSSIVFYSLGF-EPD 325
Query: 422 YYTVLFGVSRSLGICSQLI 440
++ +F +R +G + ++
Sbjct: 326 FFPAVFASARVVGWVAHIM 344
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 35/337 (10%)
Query: 129 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 188
G++P+K Q D + L + + + + + AHPM V AL + + +A
Sbjct: 99 NGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALS--AFYPDA 156
Query: 189 YEKGIHKSKYWEPTYED--SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHM 246
+ I P D ++ LIA++P +AA+ Y+ + I P++D L+Y NF M
Sbjct: 157 NDIAI-------PANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRND-LNYAENFLSM 208
Query: 247 LGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGL 299
+ +P + M + +H+DHE N S T L S ++P+ AA + L
Sbjct: 209 MFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACIAAGIAAL 267
Query: 300 AGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPR 359
GP HG AN+ VL + + + Q+KD NSG + GFGH V + DPR
Sbjct: 268 WGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDK-----NSGVKLMGFGHRVYKNFDPR 322
Query: 360 -----YTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNH 414
TC + DDPL L +L ++ + + +PNVD +SG++L
Sbjct: 323 AKIMQQTCHEVLTELGIKDDPLLDLAVELEKIA--LSDDYFVQRKLYPNVDFYSGIILKA 380
Query: 415 FGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLER 451
G+ + +TVLF V+R+ G SQ W + P +R
Sbjct: 381 MGIPTS-MFTVLFAVARTTGWVSQ--WKEMIEEPGQR 414
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 163/334 (48%), Gaps = 39/334 (11%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ--E 187
G++P +++++ S L R +P ++ ++ PV+AHPM+ + V SEF +
Sbjct: 53 GRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGMLD 106
Query: 188 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML 247
E I + E YE L+LIA+ + A +R+ + + IP + L + NF +M
Sbjct: 107 PTEGDISR----EALYEKGLDLIAKFATIVA-ANKRLKEGKEPIPPREDLSHAANFLYMA 161
Query: 248 -GFD-DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 305
G + P+ LM + +H++H G N S T S +D Y + AA+ L GP HG
Sbjct: 162 NGVEPSPEQARLMDAALILHAEH-GFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHG 220
Query: 306 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY----T 361
AN+ V+ I+ E G T E+ +++V + L + + G GH V + DPR
Sbjct: 221 GANEAVMRMIQ----EIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEK 273
Query: 362 CQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNP---WPNVDAHSGVLLNHFGLA 418
R A KH SK ++++ + + GKV NP +PNVD +SGV+ + G +
Sbjct: 274 LARLVAEKHGH--------SKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFS 325
Query: 419 EARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 452
++T +F V+R G ++ + L L RP
Sbjct: 326 -LEFFTPIFAVARISGWVGHILEYQELDNRLLRP 358
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 38/316 (12%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
GK+P+K +++ +++ D +P + LP H + V+ + +
Sbjct: 52 GKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYID-----VLKIFLS------- 99
Query: 190 EKGIHKSKYW--EPTYEDSLNLIARVPVVAAYVYQRIYKDGK--IIPKDDSLDYGGNFSH 245
IH S E E ++ + + P + AY Y+ Y GK I P+ D L + NF +
Sbjct: 100 ---IHGSMDGNDEDLREKAIRVASVFPTILAYYYR--YSKGKELIRPRKD-LSHVENFYY 153
Query: 246 ML-GFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 304
M+ G + K+ L ++ + + N S ++AS LSD Y AL L GPLH
Sbjct: 154 MMFGERNEKIRLLESAFILLME--QDINASTFAALVIASTLSDLYSCIVGALGALKGPLH 211
Query: 305 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 364
G A+++V +++E G + ++++++V K L + + GFGH V + DPR +
Sbjct: 212 GGASEKV----PPMLEEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLK 264
Query: 365 EFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYT 424
+H PD LF++ SKL E + K+KN +PNVD +S VL G +T
Sbjct: 265 RVLQEHFPDSKLFRIASKLEEYIVS-----NKIKNIYPNVDLYSSVLFEELGFPR-NMFT 318
Query: 425 VLFGVSRSLGICSQLI 440
LF +R +G + +I
Sbjct: 319 ALFATARVVGWTAHVI 334
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 171/378 (45%), Gaps = 43/378 (11%)
Query: 73 IGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKV 132
I + G G+LW +RG I E +L G++
Sbjct: 36 ISDIDGEKGILW------------YRGYRIEELARL---------STYEEVSYLILYGRL 74
Query: 133 PSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEA 188
P+K +++ ++ + + I L AHPM + V A E EA
Sbjct: 75 PTKRELEDYINRMKKYRELHPATVEVIRNL-AKAHPMFALEAAVAAEGAYDEDNQKLIEA 133
Query: 189 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 248
G +K++ E Y + L+A++P + AY Y R + +++ D L + NF +M+
Sbjct: 134 LSVGRYKAEEKELAYRIAEKLVAKMPTIVAYHY-RFSRGLEVVRPRDDLGHAANFLYMMF 192
Query: 249 FDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 306
+P L + LY+ +H+DHE S H+VAS LSD Y S AAA+ L GPLHG
Sbjct: 193 GREPDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGG 251
Query: 307 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 366
AN+ + +++ + E G +++ + K G + G GH V + DPR +EF
Sbjct: 252 ANE---MAVRNYL-EIGTPAKAKEIVEAATKP--GGPKLMGVGHRVYKAYDPRAKIFKEF 305
Query: 367 ALKHLPD--DP--LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARY 422
+ ++ DP LF + S + + V + + + +PNVD SG+ + G+ Y
Sbjct: 306 SRDYVAKFGDPQNLFAIASAIEQEV--LSHPYFQQRKLYPNVDFWSGIAFYYMGIP-YEY 362
Query: 423 YTVLFGVSRSLGICSQLI 440
+T +F +SR +G + ++
Sbjct: 363 FTPIFAMSRVVGWVAHVL 380
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/437 (23%), Positives = 192/437 (43%), Gaps = 56/437 (12%)
Query: 55 VKSELGKAQLGNITVDMVIGGMRGM----------TGLLWETSLLDPDEGIRF-RGLSIP 103
V+ ++ K LG +D+ G +G+ T + + +D DEGI RG I
Sbjct: 15 VELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPID 74
Query: 104 ECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP 163
+ G+ P++EQ D + + + + + A
Sbjct: 75 QLA---------TDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFR 125
Query: 164 VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 223
+HPM AL + + ++ + ++ ++ E + L++++P +AA Y+
Sbjct: 126 RDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKY 178
Query: 224 IYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAH 276
+ P++D L Y GNF +M+ +P + M + +H+DHE N S
Sbjct: 179 SIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTS 236
Query: 277 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW 336
T S+ ++P+ AA + L GP HG AN+ L +++E G+ E + ++V
Sbjct: 237 TVRTAGSSGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIGKK---ENIPEFVR 289
Query: 337 --KTLNSGKVVPGFGHGVLRKTDPRYTCQREFA---LKHL-PDDPLFQLVSKLFEVV--P 388
K N + GFGH V + DPR T RE LK L D L ++ +L +
Sbjct: 290 RAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALND 349
Query: 389 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLP 448
P + K +PNVD +SG++L G+ + +TV+F ++R++G + + G+
Sbjct: 350 PYFIE----KKLYPNVDFYSGIILKAMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMK 404
Query: 449 LERPKSVTLDWIEKNCK 465
+ RP+ + + +++ K
Sbjct: 405 IARPRQLYTGYEKRDFK 421
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 150/313 (47%), Gaps = 26/313 (8%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
GK+PS +++ KEL +P V + ++ALP HPM + + L ++
Sbjct: 51 GKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYL---GNIDDSG 107
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-G 248
+ + E Y +++ A++P + A Y RI + +P + L + NF +ML G
Sbjct: 108 DIPVTP----EEVYRIGISVTAKIPTIVANWY-RIKNGLEYVPPKEKLSHAANFLYMLHG 162
Query: 249 FDDPKMLE-LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 307
+ PK E M + + ++++HE N S V S LSD Y + A + L GP+HG A
Sbjct: 163 EEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGA 221
Query: 308 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 367
+E + + E + E+++++ +K L + + G GH V + DPR +++A
Sbjct: 222 VEE-------AIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYA 274
Query: 368 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVL 426
K L D LF++ +L +V L+K G NVD SG++ +G+ YT +
Sbjct: 275 SK-LGDKKLFEIAERLERLVEEYLSKKGIS----INVDYWSGLVF--YGMKIPIELYTTI 327
Query: 427 FGVSRSLGICSQL 439
F + R G + L
Sbjct: 328 FAMGRIAGWTAHL 340
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 145/337 (43%), Gaps = 38/337 (11%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
G+ P++EQ + + V + + AHP V AL
Sbjct: 96 GEAPTREQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYHDSLDI 155
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK--IIPKDDSLDYGGNFSHML 247
+H+ + L+++ P +AA Y+ Y G+ I P++D L Y NF H
Sbjct: 156 NNDLHREI-------TAYRLLSKXPTLAAXCYK--YSTGQPFIYPRND-LSYAENFLHXX 205
Query: 248 GFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 300
+P + T+H+DHE N S T L S+ ++P+ AA + L
Sbjct: 206 FATPCEEYEVNPVVARAXDKIFTLHADHEQ-NASTSTVRLAGSSGANPFACIAAGIASLW 264
Query: 301 GPLHGLANQEVLLWIKSV--VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP 358
GP HG AN+ L ++ + VD E V + KD ++ + GFGH V + DP
Sbjct: 265 GPAHGGANEACLKXLEEIGSVDNIPEYVDRAKDKDDPFR-------LXGFGHRVYKNYDP 317
Query: 359 RYTCQREFA---LKHLP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNH 414
R T RE LK L DPL + +L + + + K +PNVD +SG++L
Sbjct: 318 RATVXRETCHEVLKELNIQDPLLDVAXELERIA--LSDEYFVSKKLYPNVDFYSGIILKA 375
Query: 415 FGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLER 451
G+ +TV+F +SR++G + W+ PL R
Sbjct: 376 IGIP-VSXFTVIFAISRTIGWIAH--WNEXHSDPLNR 409
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 36/352 (10%)
Query: 129 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 188
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 91 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 148
Query: 189 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 248
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 149 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 202
Query: 249 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 301
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 203 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 261
Query: 302 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 359
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 262 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 314
Query: 360 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 413
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 315 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 370
Query: 414 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 465
G+ + +TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 371 AMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 421
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 36/352 (10%)
Query: 129 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 188
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 189 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 248
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 249 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 301
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 302 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 359
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 360 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 413
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 316 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 371
Query: 414 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 465
G+ + +TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 372 AMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 41/380 (10%)
Query: 69 VDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXX 127
+ +V G+ + + + +D ++GI R+RG +I +
Sbjct: 1 MSVVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNY---------GSYEETIYLM 51
Query: 128 XTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQE 187
GK+P+K++++ L +L + VP V I +P A + G AL
Sbjct: 52 LYGKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA------- 104
Query: 188 AYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHM 246
I K+ W E E ++++IA++ + A VY+R + IP + S + +F
Sbjct: 105 ----SIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLA 159
Query: 247 LGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 304
+P E+ M + +++DHE S + AS LSD Y S AAL L GPLH
Sbjct: 160 SFAREPTTDEINAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLH 218
Query: 305 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 364
G A +E K ++ N D K +N + GFGH V + DPR +
Sbjct: 219 GGAAEEAF---KQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPRAKIFK 272
Query: 365 EFALKHLPDDP----LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA 420
+ AL + + F++ KL E + K K +PN D +SG++ G
Sbjct: 273 KLALTLIERNADARRYFEIAQKLEE----LGIKQFSSKGIYPNTDFYSGIVFYALGFP-V 327
Query: 421 RYYTVLFGVSRSLGICSQLI 440
+T LF +SR+LG + +I
Sbjct: 328 YMFTALFALSRTLGWLAHII 347
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
GK+P++++++ +L+ +P V ++ALP +HPM +GV AL +E +
Sbjct: 83 GKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGH 142
Query: 190 EKGIHKSKYWEPTYEDSLNLIAR----VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSH 245
T + ++ + + + Y Y + +I P+ D GG+F H
Sbjct: 143 ------------TVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLH 190
Query: 246 MLGFDDPKML--ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 303
+L + P + M + + ++++HE N S T ++A SD Y + A+ L GP
Sbjct: 191 LLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRGPK 249
Query: 304 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQ 363
HG AN EV L I+ + T ++ + + K + + +VV GFGH V DPR+
Sbjct: 250 HGGAN-EVSLEIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVI 302
Query: 364 REFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYY 423
+ A K L ++ K++ + + T + + K +PN+D S V N G+ +
Sbjct: 303 KRVA-KQLSEE---GGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNMMGVP-TEMF 357
Query: 424 TVLFGVSRSLGICSQLIWDR 443
T LF ++R G + +I R
Sbjct: 358 TPLFVIARVTGWAAHIIEQR 377
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 36/352 (10%)
Query: 129 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 188
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 189 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 248
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 249 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 301
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 302 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 359
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 360 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 413
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 316 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 371
Query: 414 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 465
G+ + +TV+ ++R++G + + G+ + RP+ + + +++ K
Sbjct: 372 AMGIPSS-MFTVIAAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 26/316 (8%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
K+P+K ++D +K+L + ++P + ++ +P ++HP +G L E + +
Sbjct: 57 NKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLG-NLEPENGF 115
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 249
E E D L+A P + Y Y + +I + D L G F H+L
Sbjct: 116 EN--------EQNIAD--RLVAIFPAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLLLG 165
Query: 250 DDPKM--LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 307
++ + ++++HE N S + ++ LSD Y + AA+ L GPLHG A
Sbjct: 166 KKAAQXAIDCXNASLILYAEHEF-NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGA 224
Query: 308 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 367
N+ + D T + + + L + +++ GFGH V R+ DPR + +A
Sbjct: 225 NE-------AAXDLIXLYKTPSEAIAGIKRKLANKELIXGFGHAVYRERDPRNAIIKSWA 277
Query: 368 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLF 427
K P+ LF++ I K +PN+D +S HF + +T +F
Sbjct: 278 QKLAPN----AADGYLFDISDAIENTXQDEKKLFPNLDFYSATAY-HFLNIPTKLFTPIF 332
Query: 428 GVSRSLGICSQLIWDR 443
SR G C+ + R
Sbjct: 333 VXSRVTGWCAHIFEQR 348
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 28/331 (8%)
Query: 129 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 188
++P+ ++ R + + V AID L HPM + V L
Sbjct: 54 NSELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGAN------ 107
Query: 189 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 248
+ + S E E +++L+A P V AY +R + I P++D LDY NF M
Sbjct: 108 HARAQDSSP--EANLEKAMSLLATFPSVVAYDQRRRRGEELIEPRED-LDYSANFLWMTF 164
Query: 249 FDD--PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 306
++ P+++E + + ++++H N S T ++ S L+D + + A+ L GPLHG
Sbjct: 165 GEEAAPEVVEAFNVSMILYAEH-SFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGG 223
Query: 307 ANQEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGKVVPGFGHGVLRKTDPRYTCQR 364
AN+ V+ + + E++ + W L K V GFGH V + D R +
Sbjct: 224 ANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMK 283
Query: 365 ---EFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 421
+ +KH + L + L + + K PN+D +G N G +
Sbjct: 284 SALDAMIKHYDRPEMLGLYNGL-------EAAMEEAKQIKPNLDYPAGPTYNLMGF-DTE 335
Query: 422 YYTVLFGVSRSLGICSQL---IWDRALGLPL 449
+T LF +R G + + + D AL PL
Sbjct: 336 MFTPLFIAARITGWTAHIMEQVADNALIRPL 366
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 29/315 (9%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
GK+PS E++ +L +P+++ + I +LP M+ + V AL
Sbjct: 51 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG--------- 101
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGG--NFSHML 247
+ + P E+++ LIA P + AY + + I P S YG N+ +ML
Sbjct: 102 ----ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAP---SSQYGHVENYYYML 154
Query: 248 GFDDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 305
+ P + + Y+ + ++H G N S + + S SD + AAL + GPLHG
Sbjct: 155 TGEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHG 213
Query: 306 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQRE 365
A V ++++ GE E + Y+ + L G+ + GFGH V + DPR R+
Sbjct: 214 GAPSAV----TKMLEDIGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQ 266
Query: 366 FALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTV 425
A + +D L + +L + + NV+ ++ ++ + +T
Sbjct: 267 KAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDF-DDELFTP 325
Query: 426 LFGVSRSLGICSQLI 440
F SR +G C+ ++
Sbjct: 326 TFSASRMVGWCAHVL 340
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 49/344 (14%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP--VTAHPMTQFASGVMALQVQSEFQE 187
G++P+++Q++ + + + VP+ V I ++P A M + A G++A ++
Sbjct: 55 GELPNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNR 114
Query: 188 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK--DDSLDYGGNFSH 245
A K E ++ +IA+ + A +Y+ K+G + PK + S Y +F
Sbjct: 115 ATNK------------ELAVQIIAKTATITANIYRA--KEG-LKPKIPEPSESYAESFLA 159
Query: 246 MLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASA-LSDPYLSFAAALNGLAGP 302
P E+ M + +++DHE ++ T LVAS+ LSD Y AAL L GP
Sbjct: 160 ATFGKKPTQEEIKAMDASLILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGP 217
Query: 303 LHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKV-VPGFGHGVLRKTDPRY- 360
LHG A +E K V E G + E + + + GK + GFGH V + DPR
Sbjct: 218 LHGGAAEEAF---KQFV-EIG---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAK 270
Query: 361 ---TCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLG----KVKNPWPNVDAHSGVLLN 413
T + FA K+ + V K +E+ I KLG K+ +PN D +SG++
Sbjct: 271 IFKTLAKSFAEKN-------ENVKKYYEIAERI-EKLGVDTFGSKHIYPNTDFYSGIVFY 322
Query: 414 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 457
G +T LF +SR LG + +I L RP+++ +
Sbjct: 323 ALGFP-IYMFTSLFALSRVLGWLAHIIEYVEEQHRLIRPRALYI 365
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 22/330 (6%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
G +P+++++ + ++ +PD+V AI LP + + + V A+
Sbjct: 57 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASET----- 111
Query: 190 EKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHML 247
K K+ + T D + +I R+ + VY+ I +PK S Y +F +
Sbjct: 112 -----KFKWNKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAF 165
Query: 248 GFDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 306
G K ++ M + +++DHE S G + S LSD Y AAL L GPLHG
Sbjct: 166 GRKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGG 224
Query: 307 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 366
A + + + D + + D + +N K + GFGH V + DPR +
Sbjct: 225 AAEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGI 278
Query: 367 ALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTV 425
A K P V ++ + K K +PN D SG++ G YT
Sbjct: 279 AEKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTA 338
Query: 426 LFGVSRSLGICSQLIWDRALGLPLERPKSV 455
LF +SR G + I L RP++V
Sbjct: 339 LFALSRVTGWQAHFIEYVEEQQRLIRPRAV 368
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 22/330 (6%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
G +P+++++ + ++ +PD+V AI LP + + + V A+
Sbjct: 58 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASET----- 112
Query: 190 EKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHML 247
K K+ + T D + +I R+ + VY+ I +PK S Y +F +
Sbjct: 113 -----KFKWNKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAF 166
Query: 248 GFDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 306
G K ++ M + +++DHE S G + S LSD Y AAL L GPLHG
Sbjct: 167 GRKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGG 225
Query: 307 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 366
A + + + D + + D + +N K + GFGH V + DPR +
Sbjct: 226 AAEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGI 279
Query: 367 ALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTV 425
A K P V ++ + K K +PN D SG++ G YT
Sbjct: 280 AEKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTA 339
Query: 426 LFGVSRSLGICSQLIWDRALGLPLERPKSV 455
LF +SR G + I L RP++V
Sbjct: 340 LFALSRVTGWQAHFIEYVEEQQRLIRPRAV 369
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 31/329 (9%)
Query: 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 189
G++P+ ++ S+ R V + + LP HPM + + L + ++
Sbjct: 99 GELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDED-- 156
Query: 190 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 249
+ +++K ++ ++A +P + A +R I P L Y NF HM
Sbjct: 157 DAAANRAK--------AMRMMAVLPTIVAIDMRRRRGLPPIAPHS-GLGYAQNFLHMCFG 207
Query: 250 DDPK--MLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 307
+ P+ ++ + ++++H G N S +V S SD Y + A+ L G LHG A
Sbjct: 208 EVPETAVVSAFEQSMILYAEH-GFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGA 266
Query: 308 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 367
N+ V+ + + D ++++ L + + GFGH V R D R + A
Sbjct: 267 NEAVMHDMIEIGDPA-------NAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKR-A 318
Query: 368 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSG--VLLNHFGLAEARYYTV 425
L+ + Q +++V + ++ PN+D +G L F +A +T
Sbjct: 319 LERVGTVRDGQRWLDIYQV---LAAEMASATGILPNLDFPTGPAYYLMGFDIAS---FTP 372
Query: 426 LFGVSRSLGICSQLIWDRALGLPLERPKS 454
+F +SR G + I ++A L RP S
Sbjct: 373 IFVMSRITGWTAH-IMEQATANALIRPLS 400
>pdb|2GH9|A Chain A, Thermus Thermophilus Maltotriose Binding Protein Bound
With Maltotriose
Length = 386
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 367 ALKHLPDDPLFQLVSKLFEVVPPI--LTKLGKVKNPWPN 403
A+K L DP+ SK+F + P+ + ++GKV PW N
Sbjct: 312 AVKQLEKDPVVAGFSKVFPLGAPMPNIPEMGKVWGPWGN 350
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 299 LAGPLHGLANQEVLLWIKSVVDECG 323
L G LH + +E+L++IKS ECG
Sbjct: 59 LMGQLHRMNKEEILVFIKSCQHECG 83
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 299 LAGPLHGLANQEVLLWIKSVVDECG 323
L G LH + +E+L++IKS ECG
Sbjct: 58 LMGQLHRMNKEEILVFIKSCQHECG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,741,306
Number of Sequences: 62578
Number of extensions: 577142
Number of successful extensions: 1339
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 31
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)