Query 012204
Match_columns 468
No_of_seqs 278 out of 1561
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 8E-126 2E-130 987.2 42.2 426 35-460 2-427 (427)
2 cd06105 ScCit1-2_like Saccharo 100.0 6E-122 1E-126 958.7 44.1 427 37-463 1-427 (427)
3 KOG2617 Citrate synthase [Ener 100.0 2E-121 5E-126 919.8 36.5 430 33-466 23-452 (458)
4 PRK09569 type I citrate syntha 100.0 2E-118 3E-123 935.5 44.5 430 36-466 2-433 (437)
5 cd06106 ScCit3_like Saccharomy 100.0 5E-118 1E-122 929.8 42.9 424 37-460 1-428 (428)
6 cd06103 ScCS-like Saccharomyce 100.0 7E-115 2E-119 906.3 42.8 424 37-460 1-426 (426)
7 PLN02456 citrate synthase 100.0 2E-106 4E-111 848.7 35.0 406 33-464 30-448 (455)
8 cd06115 AthCS_per_like Arabido 100.0 5.1E-99 1E-103 784.5 38.0 386 51-462 9-406 (410)
9 COG0372 GltA Citrate synthase 100.0 1.5E-98 3E-103 773.1 35.6 370 65-465 9-385 (390)
10 cd06107 EcCS_AthCS-per_like Es 100.0 3.7E-98 8E-103 773.0 37.4 362 73-458 6-382 (382)
11 cd06116 CaCS_like Chloroflexus 100.0 9.7E-98 2E-102 770.4 35.9 362 73-462 6-379 (384)
12 cd06109 BsCS-I_like Bacillus s 100.0 1.1E-96 2E-101 755.2 38.3 346 74-458 1-349 (349)
13 TIGR01798 cit_synth_I citrate 100.0 3E-96 7E-101 764.2 36.0 375 51-461 19-409 (412)
14 PRK12351 methylcitrate synthas 100.0 5E-96 1E-100 755.8 36.9 354 74-462 10-370 (378)
15 PRK05614 gltA type II citrate 100.0 9.7E-96 2E-100 762.4 36.1 372 52-459 33-419 (419)
16 cd06117 Ec2MCS_like_1 Subgroup 100.0 2.1E-95 5E-100 749.3 36.6 353 75-462 2-361 (366)
17 PRK14036 citrate synthase; Pro 100.0 3.7E-95 8E-100 750.1 37.2 360 72-463 4-369 (377)
18 cd06108 Ec2MCS_like Escherichi 100.0 3.7E-95 8E-100 746.3 37.0 352 74-462 1-358 (363)
19 PRK14032 citrate synthase; Pro 100.0 7E-95 1.5E-99 760.7 38.8 396 43-463 10-440 (447)
20 cd06112 citrate_synt_like_1_1 100.0 8.4E-95 1.8E-99 747.4 36.6 359 74-462 3-368 (373)
21 PRK14035 citrate synthase; Pro 100.0 4E-94 8.6E-99 740.6 37.1 356 72-463 3-364 (371)
22 cd06113 citrate_synt_like_1_2 100.0 1.2E-93 2.5E-98 745.2 38.7 368 78-458 10-406 (406)
23 PRK14034 citrate synthase; Pro 100.0 3.1E-93 6.7E-98 734.2 36.8 353 73-461 4-362 (372)
24 PRK14037 citrate synthase; Pro 100.0 7.8E-93 1.7E-97 732.8 37.6 357 72-462 4-369 (377)
25 cd06114 EcCS_like Escherichia 100.0 7.7E-93 1.7E-97 737.8 36.2 359 72-458 27-400 (400)
26 cd06111 DsCS_like Cold-active 100.0 4.9E-90 1.1E-94 709.4 36.3 352 74-460 1-358 (362)
27 PF00285 Citrate_synt: Citrate 100.0 8.9E-91 1.9E-95 715.2 30.5 348 75-452 1-356 (356)
28 PRK12349 citrate synthase 3; P 100.0 8.6E-90 1.9E-94 709.2 37.0 353 73-460 6-365 (369)
29 cd06118 citrate_synt_like_1 Ci 100.0 1.4E-89 3.1E-94 706.5 37.1 352 74-456 1-358 (358)
30 cd06110 BSuCS-II_like Bacillus 100.0 8.6E-89 1.9E-93 700.0 36.9 350 74-458 1-356 (356)
31 TIGR01800 cit_synth_II 2-methy 100.0 1.5E-88 3.2E-93 700.5 36.5 355 74-463 1-361 (368)
32 PRK12350 citrate synthase 2; P 100.0 2.1E-88 4.6E-93 692.5 33.6 337 74-460 3-348 (353)
33 PRK14033 citrate synthase; Pro 100.0 4.4E-88 9.6E-93 697.4 36.3 356 72-462 9-370 (375)
34 cd06101 citrate_synt Citrate s 100.0 1.4E-72 2.9E-77 558.5 26.3 259 74-456 1-265 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 1.5E-64 3.1E-69 503.5 27.3 266 78-458 17-282 (282)
36 cd06099 CS_ACL-C_CCL Citrate s 100.0 9.8E-59 2.1E-63 446.3 21.1 208 238-456 1-213 (213)
37 PRK06224 citrate synthase; Pro 100.0 2.3E-57 5.1E-62 449.6 24.8 243 81-459 8-257 (263)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 4E-50 8.6E-55 390.1 21.8 208 236-454 10-221 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 5.4E-50 1.2E-54 432.0 24.2 268 43-452 305-599 (608)
40 KOG1254 ATP-citrate lyase [Ene 99.6 1E-16 2.2E-21 166.2 6.0 185 252-451 389-590 (600)
41 cd06100 CCL_ACL-C Citryl-CoA l 97.8 0.0028 6.1E-08 62.0 19.0 72 99-181 1-78 (227)
42 KOG2617 Citrate synthase [Ener 94.6 0.019 4.1E-07 60.1 2.3 200 35-248 224-454 (458)
43 cd06099 CS_ACL-C_CCL Citrate s 78.6 8 0.00017 37.6 7.6 59 120-180 2-64 (213)
44 PRK14037 citrate synthase; Pro 67.5 18 0.00039 38.3 7.5 62 119-180 151-214 (377)
45 PRK14035 citrate synthase; Pro 60.2 23 0.00051 37.4 6.7 62 118-181 150-215 (371)
46 PRK12349 citrate synthase 3; P 58.6 33 0.00071 36.3 7.5 60 119-180 154-217 (369)
47 PRK14034 citrate synthase; Pro 58.2 26 0.00057 37.0 6.7 61 119-181 151-215 (372)
48 cd06112 citrate_synt_like_1_1 57.1 20 0.00044 37.8 5.7 61 119-181 152-216 (373)
49 PRK14036 citrate synthase; Pro 56.1 32 0.00069 36.5 6.9 61 119-181 153-217 (377)
50 PRK12351 methylcitrate synthas 47.3 65 0.0014 34.2 7.6 60 119-180 158-221 (378)
51 cd06111 DsCS_like Cold-active 45.7 66 0.0014 33.9 7.3 61 119-181 148-212 (362)
52 PRK14033 citrate synthase; Pro 45.7 68 0.0015 34.0 7.4 60 119-180 158-221 (375)
53 cd06108 Ec2MCS_like Escherichi 43.1 74 0.0016 33.6 7.2 60 119-180 146-209 (363)
54 cd06113 citrate_synt_like_1_2 43.0 73 0.0016 34.2 7.2 60 119-180 175-240 (406)
55 cd06117 Ec2MCS_like_1 Subgroup 40.4 96 0.0021 32.8 7.5 60 119-180 149-212 (366)
56 TIGR01800 cit_synth_II 2-methy 39.7 1E+02 0.0022 32.5 7.6 62 117-180 146-211 (368)
57 PF07583 PSCyt2: Protein of un 39.0 37 0.0008 33.0 3.9 36 122-162 29-64 (208)
58 PRK14032 citrate synthase; Pro 37.6 1E+02 0.0022 33.5 7.4 60 119-180 205-270 (447)
59 cd06110 BSuCS-II_like Bacillus 36.9 1.2E+02 0.0025 31.9 7.5 60 119-180 148-211 (356)
60 cd06118 citrate_synt_like_1 Ci 36.7 1.1E+02 0.0024 32.1 7.3 60 119-180 148-211 (358)
61 PTZ00096 40S ribosomal protein 35.4 27 0.00059 32.0 2.2 22 95-126 15-36 (143)
62 cd04448 DEP_PIKfyve DEP (Dishe 35.4 56 0.0012 26.9 3.9 45 96-151 19-63 (81)
63 cd06109 BsCS-I_like Bacillus s 34.2 1.2E+02 0.0026 31.8 7.1 60 119-180 137-200 (349)
64 cd06101 citrate_synt Citrate s 33.5 1.7E+02 0.0038 29.3 7.8 76 100-180 37-116 (265)
65 PRK04038 rps19p 30S ribosomal 31.8 35 0.00076 31.0 2.3 14 95-108 7-20 (134)
66 PRK13890 conjugal transfer pro 29.9 2.5E+02 0.0055 24.6 7.4 41 97-145 16-57 (120)
67 PLN00179 acyl- [acyl-carrier p 29.5 7.3E+02 0.016 26.6 11.9 83 277-370 231-314 (390)
68 cd07622 BAR_SNX4 The Bin/Amphi 29.5 1.5E+02 0.0032 28.6 6.3 83 351-445 8-91 (201)
69 TIGR01025 rpsS_arch ribosomal 29.4 40 0.00086 30.7 2.2 14 95-108 5-18 (135)
70 PF00285 Citrate_synt: Citrate 28.8 2E+02 0.0044 30.0 7.7 61 119-181 148-214 (356)
71 PRK08558 adenine phosphoribosy 26.8 1.2E+02 0.0026 29.9 5.3 56 100-163 24-80 (238)
72 PRK13755 putative mercury tran 25.5 49 0.0011 29.8 2.0 23 423-445 57-79 (139)
73 PF03461 TRCF: TRCF domain; I 24.1 1E+02 0.0022 26.2 3.7 43 131-181 28-71 (101)
74 cd04449 DEP_DEPDC5-like DEP (D 22.5 1.2E+02 0.0026 24.8 3.8 32 120-151 33-65 (83)
75 PF09702 Cas_Csa5: CRISPR-asso 20.8 98 0.0021 27.0 2.9 20 128-147 68-87 (105)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=7.8e-126 Score=987.16 Aligned_cols=426 Identities=79% Similarity=1.302 Sum_probs=411.6
Q ss_pred hhHHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCC
Q 012204 35 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 114 (468)
Q Consensus 35 ~~l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 114 (468)
++||++++++||.+++++|+||++||+++||++||+|+++||||+++++|+||+||+++||+||||+|+||++.++++.+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccC
Q 012204 115 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 194 (468)
Q Consensus 115 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~ 194 (468)
+++|+||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|++++.|+++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCc
Q 012204 195 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 274 (468)
Q Consensus 195 k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~S 274 (468)
+.+||++.++++++|||++|+|+|+|||+++++|+.++||+++||++||++||++++++++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 88999999999999999999999999998777776789999999999999999989999999999999999999989999
Q ss_pred hhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCC
Q 012204 275 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 354 (468)
Q Consensus 275 t~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr 354 (468)
|||+|+||||++|||+|++|||++|+||+||||||+|++||.++.+.+|.+.+++++++||++.+++|++||||||+|||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999887887778999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhh
Q 012204 355 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 434 (468)
Q Consensus 355 ~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~G 434 (468)
.+|||+++|++++++..+++++++++.++++++++++.++++.||+|||||||+|+|+++||||+.++||++|++||++|
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~G 401 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALG 401 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccch
Confidence 99999999999999998899999999999999999999999999999999999999999999985589999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCccchhHH
Q 012204 435 ICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 435 wlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
|+||++||++.+.||+||+|++++++
T Consensus 402 w~AH~ieq~~~~~~I~RP~s~~~~~~ 427 (427)
T TIGR01793 402 ILSQLIWDRALGLPLERPKSVSTEWL 427 (427)
T ss_pred HHHHHHHHHHcCCCccCCcccccccC
Confidence 99999999999999999999999874
No 2
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=6.4e-122 Score=958.69 Aligned_cols=427 Identities=68% Similarity=1.173 Sum_probs=410.3
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 012204 37 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 116 (468)
Q Consensus 37 l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 116 (468)
|||+++++||.+++++++|+++||+++||++|+|++++||||+++++|+||+|||++||+||||+|+||++++|++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766788
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCC
Q 012204 117 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 196 (468)
Q Consensus 117 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~ 196 (468)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|+|+++|+++.++.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998988898888888
Q ss_pred CCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCchh
Q 012204 197 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 276 (468)
Q Consensus 197 ~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~St~ 276 (468)
++|++.++++++|||++|+|+|++||++++++++++||+++||++||++||++.++...++||++|||||||||+|+|||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTf 240 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHH
Confidence 89999999999999999999999999866556689999999999999999998778899999999999999998899999
Q ss_pred HHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCC
Q 012204 277 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 356 (468)
Q Consensus 277 aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~ 356 (468)
|+|+||||++|||+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||+|||..
T Consensus 241 aarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~ 320 (427)
T cd06105 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKT 320 (427)
T ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988888777889999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHH
Q 012204 357 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 436 (468)
Q Consensus 357 DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~Gwl 436 (468)
|||+++|++++.++.++++++++++++++++++++.++++.|++|||||||+|+++++||||+.++||++|++||++||+
T Consensus 321 DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~ 400 (427)
T cd06105 321 DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVL 400 (427)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999558999999999999999
Q ss_pred HHHHHHHHcCCCcccCCccchhHHHHH
Q 012204 437 SQLIWDRALGLPLERPKSVTLDWIEKN 463 (468)
Q Consensus 437 AH~ieq~~~~~pi~RP~s~~~~~~~~~ 463 (468)
||++||++.+.||+||+|+|+++++++
T Consensus 401 AH~~Eq~~~~~~I~RP~s~~~~~~~~~ 427 (427)
T cd06105 401 SQLIWDRALGLPLERPKSVSTDGLEKL 427 (427)
T ss_pred HHHHHHHhCCCCccCCcchhHHHHhhC
Confidence 999999998889999999999999863
No 3
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=2.3e-121 Score=919.80 Aligned_cols=430 Identities=61% Similarity=1.043 Sum_probs=420.2
Q ss_pred cchhHHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCC
Q 012204 33 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAA 112 (468)
Q Consensus 33 ~~~~l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~ 112 (468)
+..+||++|++.||++++++|+++++|| ++|+||++++++||||++.+.|++|++|+++||+|||++|+||+..+|++
T Consensus 23 ~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~~ 100 (458)
T KOG2617|consen 23 SAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPPA 100 (458)
T ss_pred ccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCCC
Confidence 3445999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhc
Q 012204 113 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 192 (468)
Q Consensus 113 ~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~ 192 (468)
+++.||+||+++|||+||++||++|+++++.+|++|+.+|++|.++|+++|++.|||.||++++++|+.+|+|+++|..|
T Consensus 101 ~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G 180 (458)
T KOG2617|consen 101 EEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRG 180 (458)
T ss_pred ccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCC
Q 012204 193 IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 272 (468)
Q Consensus 193 ~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n 272 (468)
+.|.+||++++|||++|||++|+|+|++|++.+++|.+. ||+++||++||++|+|+.+++++++||+|+++|+||||+|
T Consensus 181 ~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~-~~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gn 259 (458)
T KOG2617|consen 181 IGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPK-PDPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGN 259 (458)
T ss_pred cchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCC-CCcccchhHhHHHHHccCChHHHHHHHHeeeeecccccCc
Confidence 999999999999999999999999999999999988544 4999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCC
Q 012204 273 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 352 (468)
Q Consensus 273 ~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~v 352 (468)
+|+||.|+++|++ |||.|++||+++|+||+||+|||+|++||.++.++||++.+.|++++|+|+++++|++||||||+|
T Consensus 260 VsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHav 338 (458)
T KOG2617|consen 260 VSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAV 338 (458)
T ss_pred HHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhh
Q 012204 353 LRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 432 (468)
Q Consensus 353 yr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 432 (468)
||++|||+.+++++|.+++++||+++++.+++++++.+++|++|.||+|||||+|||++++++|+++..|||++|+|||+
T Consensus 339 lr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa 418 (458)
T KOG2617|consen 339 LRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRA 418 (458)
T ss_pred ccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986777999999999
Q ss_pred hhHHHHHHHHHHcCCCcccCCccchhHHHHHhhh
Q 012204 433 LGICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 466 (468)
Q Consensus 433 ~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~~~~ 466 (468)
+|.++|+||+|+.+.||+||+|+||+++.++++.
T Consensus 419 ~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~ 452 (458)
T KOG2617|consen 419 LGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNM 452 (458)
T ss_pred HHHHHHHHHHHHhCCcccCccccchHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.6e-118 Score=935.47 Aligned_cols=430 Identities=52% Similarity=0.914 Sum_probs=408.6
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCC
Q 012204 36 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 115 (468)
Q Consensus 36 ~l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~ 115 (468)
+|||+++++||.+|++|++||++||+++||++|+||+.+||||+++++|+||+||+++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhc-cC
Q 012204 116 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IH 194 (468)
Q Consensus 116 ~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~-~~ 194 (468)
++++||||+||||||+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|.|+..|+++ .+
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999888776 56
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCc
Q 012204 195 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 274 (468)
Q Consensus 195 k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~S 274 (468)
+.++|++.++++++|||++|+|+|++||++++++++++|++++||++||++||+++ +...++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naS 240 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLKYKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVS 240 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcch
Confidence 66789999999999999999999999999876667899999999999999999886 55679999999999999978999
Q ss_pred hhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCCcccCcCCCCC
Q 012204 275 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG-ENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 353 (468)
Q Consensus 275 t~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig-~~~s~~~~~~~v~~~l~~g~~IpGfGH~vy 353 (468)
|||+|+++||++|||+|++|||++|+||+||||||+|++||.++.+++| ...+++++++||++.+++|++||||||+||
T Consensus 241 TfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 241 AHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999987764 334689999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhh
Q 012204 354 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 433 (468)
Q Consensus 354 r~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 433 (468)
|..|||+++|+++++++.++++++++++++++++.+++.++++.|+++||||||+|+++++||||+.++||++|++||++
T Consensus 321 k~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~~ 400 (437)
T PRK09569 321 RKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRAL 400 (437)
T ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHHH
Confidence 99999999999999999888999999999999999888899999999999999999999999999449999999999999
Q ss_pred hHHHHHHHHHHcCCCcccCCccchhHHHHHhhh
Q 012204 434 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 466 (468)
Q Consensus 434 GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~~~~ 466 (468)
||+||++||+..+.||+||+|+|+|++++.|++
T Consensus 401 Gw~AH~iEq~~~~~~i~RP~~~Y~G~~~~~~~~ 433 (437)
T PRK09569 401 GVMANITWDRGLGYAIERPKSVTTEMLEKWAAE 433 (437)
T ss_pred HHHHHHHHHHhCCCCccCCccccchHHHHHHhh
Confidence 999999999988878999999999999999964
No 5
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=4.8e-118 Score=929.82 Aligned_cols=424 Identities=58% Similarity=1.017 Sum_probs=398.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 012204 37 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 116 (468)
Q Consensus 37 l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 116 (468)
||++++++||.+|+.+++|+++||+++||++|++++++|||||++++|+||+||+++|++||||+|+||++++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998764444
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCC
Q 012204 117 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 196 (468)
Q Consensus 117 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~ 196 (468)
.+.||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+.++.|..+|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 44559999999999999999999999999999999999999999999999999999999999999888877787776666
Q ss_pred CCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHhhhCC-CChHHHHHHHHHHHHhcCCCCCCCc
Q 012204 197 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGF-DDPKMLELMRLYVTIHSDHEGGNVS 274 (468)
Q Consensus 197 ~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~-~~~p~~~l~~~~nf~~ml~~-~~~~~~~~l~~~LvL~ADHeg~n~S 274 (468)
++|++.++++++|||++|+|+|++||++++++. +++|++++||++||++||+. |++.+.++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 789999999999999999999999999886554 55799999999999999975 7889999999999999999988999
Q ss_pred hhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCC
Q 012204 275 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 354 (468)
Q Consensus 275 t~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr 354 (468)
|||+|++|||++|+|+|++|||++|+||+|||||++|++||.++.++||+..+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886556799999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhC--CCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhh
Q 012204 355 KTDPRYTCQREFALKHL--PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 432 (468)
Q Consensus 355 ~~DPRa~~L~~~a~~~~--~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 432 (468)
..|||+++|+++++++. ..++++++++++++++.+++.++++.|++|||||||+|+++++||||+.++||++|++||+
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~ 400 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRA 400 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHH
Confidence 99999999999999874 4579999999999999988888888999999999999999999999965789999999999
Q ss_pred hhHHHHHHHHHHcCCCcccCCccchhHH
Q 012204 433 LGICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 433 ~GwlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
+||+||++||++.+.||+||+|+|++++
T Consensus 401 ~GW~AHi~eq~~~~~~I~RP~s~~~~~~ 428 (428)
T cd06106 401 LGPLTQLVWDRILGLPIERPKSLSLEGL 428 (428)
T ss_pred HHHHHHHHHHHhCCCCCcCCCccccccC
Confidence 9999999999998889999999999874
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=7.2e-115 Score=906.33 Aligned_cols=424 Identities=64% Similarity=1.136 Sum_probs=401.0
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 012204 37 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 116 (468)
Q Consensus 37 l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 116 (468)
|||+++++||.++++++.|+++||+++++++|++++.+||||+++++|+||+|||++||+||||+|+||++++|+++.+.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766554
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhc-cCC
Q 012204 117 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHK 195 (468)
Q Consensus 117 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~-~~k 195 (468)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|+++|+++|||++|+++|++|+++++|++.|+++ .++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999998888778765 667
Q ss_pred CCCCCchHHHHHHHHHhhHHHHHHHHHHHh-cCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCc
Q 012204 196 SKYWEPTYEDSLNLIARVPVVAAYVYQRIY-KDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 274 (468)
Q Consensus 196 ~~~~e~~~e~al~liA~~p~iaa~iyr~~~-~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~S 274 (468)
+++|+..++++++|||++|+|+|++||+++ .++++++|++++||++||++||++++++.+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 788999999999999999999999999885 4456889999999999999999876688899999999999999978999
Q ss_pred hhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCC
Q 012204 275 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 354 (468)
Q Consensus 275 t~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr 354 (468)
|||+|+||||++|+|+|++|||++|+||+|||||+.|++||.++.+++|.+.+++++++||++.+++|++||||||+|||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999877886667899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhh
Q 012204 355 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 434 (468)
Q Consensus 355 ~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~G 434 (468)
..|||+++|+++++++...++++++++++++++.+++.++++.|+++||||||+|++++.||||+.++||++|++||++|
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~G 400 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALG 400 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcch
Confidence 99999999999999998888999999999999998888888889999999999999999999995489999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCccchhHH
Q 012204 435 ICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 435 wlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
|+||++||++.|.+|+||+|++|+.+
T Consensus 401 w~AH~~Eq~~~~~~i~RP~s~~~~~~ 426 (426)
T cd06103 401 VLAQLVWSRALGLPIERPKSMSTEGL 426 (426)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccC
Confidence 99999999999989999999999753
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=2.1e-106 Score=848.72 Aligned_cols=406 Identities=48% Similarity=0.701 Sum_probs=380.8
Q ss_pred cchhHHHHHHhhCHHHHHHHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCC
Q 012204 33 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPA 111 (468)
Q Consensus 33 ~~~~l~~~~~~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~ 111 (468)
+.++++..+.+.+|+++..||+|++ |++.+|.+|+| +||+|+.+++|+||+||+++|+ +||||+|+||+++++
T Consensus 30 ~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~~- 103 (455)
T PLN02456 30 TGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKSP- 103 (455)
T ss_pred CCcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhcCC-
Confidence 5678999999999999999999998 88999999998 6999999999999999999997 999999999999874
Q ss_pred CCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhh
Q 012204 112 AKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEK 191 (468)
Q Consensus 112 ~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~ 191 (468)
||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+++++++..|..
T Consensus 104 --------feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~ 175 (455)
T PLN02456 104 --------FEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLR 175 (455)
T ss_pred --------HHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHH
Q 012204 192 GIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTI 264 (468)
Q Consensus 192 ~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL 264 (468)
|.++.++|+..++++++|||++|+|+|++||+++|.+ ++.|++++||++||++||++ +++.++++||++|||
T Consensus 176 g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~-~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiL 254 (455)
T PLN02456 176 GQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRG-PVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFII 254 (455)
T ss_pred ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHee
Confidence 8777778999999999999999999999999988654 67799999999999999986 788999999999999
Q ss_pred hcCCCCCCCchhHHHHhh-ccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 012204 265 HSDHEGGNVSAHTGHLVA-SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK 343 (468)
Q Consensus 265 ~ADHeg~n~St~aarvva-St~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~ 343 (468)
||||| +|+|||++|+++ ||++|+|+|++|||++|+||+||||||+|++||.+| | +++++++||++.+++|+
T Consensus 255 hADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~ 326 (455)
T PLN02456 255 HADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKNSKK 326 (455)
T ss_pred eccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHhCCC
Confidence 99999 999999999999 999999999999999999999999999999999887 5 57899999999999999
Q ss_pred cccCcCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCcc
Q 012204 344 VVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA 420 (468)
Q Consensus 344 ~IpGfGH~vyr~~DPRa~~L~~~a~~~---~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~ 420 (468)
+||||||+|||..|||+++|+++++++ .+++|+++++.++++++. .+++++.|++|||||||+|+|+++||||+
T Consensus 327 ~l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~--~~~~~~~r~l~pNVDfysg~l~~~lGip~- 403 (455)
T PLN02456 327 VLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVAL--LDEYFKVRKLYPNVDFYSGVLLRALGFPE- 403 (455)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhcCCCCCCcCcHHHHHHHHHHcCcCh-
Confidence 999999999999999999999999965 478999999999999873 37789999999999999999999999995
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHcC-CCcccCCccchhHHHHHh
Q 012204 421 RYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWIEKNC 464 (468)
Q Consensus 421 ~~~t~lF~vsR~~GwlAH~ieq~~~~-~pi~RP~s~~~~~~~~~~ 464 (468)
++||++|++||++||+||++||...+ .+|+||+|+|+|...+.+
T Consensus 404 ~~~t~lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y~G~~~~~~ 448 (455)
T PLN02456 404 EFFTVLFAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRHY 448 (455)
T ss_pred hhccchhhhhhHHHHHHHHHHHHhCCcccccCCCccccCCCcccc
Confidence 99999999999999999999998764 479999999999865543
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=5.1e-99 Score=784.53 Aligned_cols=386 Identities=26% Similarity=0.380 Sum_probs=342.9
Q ss_pred HHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh
Q 012204 51 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 129 (468)
Q Consensus 51 ~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~ 129 (468)
.|++|++.-+ ..|..+++ .||+|+.+++|+||+|||++|+ +||||+|+||++++ .||||+||||+
T Consensus 9 d~~~~~~~~~--~~g~~~~~---~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~LLl~ 74 (410)
T cd06115 9 DFKKIKAGKD--DKGLRLYD---PGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYLLIY 74 (410)
T ss_pred eHHHhcCCcc--cCCCcccC---CccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHc
Confidence 4778887322 35677765 5999999999999999999996 99999999999986 49999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHH
Q 012204 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNL 209 (468)
Q Consensus 130 G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~l 209 (468)
|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++....-..+.+-...++..++++++|
T Consensus 75 G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~rl 154 (410)
T cd06115 75 GNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRI 154 (410)
T ss_pred CCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986543210001110001235677899999
Q ss_pred HHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhh
Q 012204 210 IARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVA 282 (468)
Q Consensus 210 iA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvva 282 (468)
||++|+|+|++||++.+. ++++|+++++|++||++||++ |++..+++||.+|||||||| +|+||||+|+++
T Consensus 155 iA~~p~i~A~~~r~~~g~-~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv~a 232 (410)
T cd06115 155 LGKAPTIAAAAYRRRAGR-PPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRHLA 232 (410)
T ss_pred HHHHHHHHHHHHHHHcCC-CCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHHHH
Confidence 999999999999998764 488999999999999999974 56789999999999999998 999999999999
Q ss_pred ccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHH
Q 012204 283 SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTC 362 (468)
Q Consensus 283 St~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~ 362 (468)
||++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||..|||+++
T Consensus 233 St~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa~~ 305 (410)
T cd06115 233 SSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRAKI 305 (410)
T ss_pred hcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHH
Confidence 999999999999999999999999999999999887 5 568999999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHH
Q 012204 363 QREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQL 439 (468)
Q Consensus 363 L~~~a~~~~---~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ 439 (468)
|+++++++. ++++++++++++|+++.+ .++++.|+++||||||+|++++.||||+ ++||++|++||++||+||+
T Consensus 306 L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p~-~~~t~lFa~sR~~Gw~AH~ 382 (410)
T cd06115 306 IKKLADEVFEIVGKDPLIEIAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRAMGFPT-DFFPVLFAIPRMAGYLAHW 382 (410)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHh--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhhhhHHHHH
Confidence 999999874 467999999999998865 5577789999999999999999999996 9999999999999999999
Q ss_pred HHHHHcC-CCcccCCccchhHHHH
Q 012204 440 IWDRALG-LPLERPKSVTLDWIEK 462 (468)
Q Consensus 440 ieq~~~~-~pi~RP~s~~~~~~~~ 462 (468)
+||+..+ .+|+||++.|+|...+
T Consensus 383 ~Eq~~~~~~~i~RP~~~Y~G~~~~ 406 (410)
T cd06115 383 RESLDDPDTKIMRPQQLYTGVWLR 406 (410)
T ss_pred HHHHhCCCCcccCcccccCCCCCC
Confidence 9999874 5799999999996433
No 9
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.5e-98 Score=773.08 Aligned_cols=370 Identities=31% Similarity=0.450 Sum_probs=335.7
Q ss_pred cceehhccccccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 012204 65 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 143 (468)
Q Consensus 65 g~~t~~~~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~ 143 (468)
++++..++.+||+|+.+++|+||+||+++| ++||||+|+||+++. +|||++||||+|+|||.+|+++|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 667778888999999999999999999999 599999999999984 5999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHH
Q 012204 144 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 223 (468)
Q Consensus 144 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~ 223 (468)
++..++.+|+++.+++..+|++.|||++|+++|++|+..+... ... +...+.++||+|++|+|+|++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~------~~~----~~~~~~a~rlia~~pti~a~~yr~ 149 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPDK------LDL----NDRREAALRLIAKLPTIAAAVYRY 149 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhccccccc------ccc----chhHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999998887643211 011 116778999999999999999999
Q ss_pred HhcCCcccCCCCCCCHHHHHHhhhCC--CC-hHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccc
Q 012204 224 IYKDGKIIPKDDSLDYGGNFSHMLGF--DD-PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 300 (468)
Q Consensus 224 ~~~~~~~~~p~~~l~~~~nf~~ml~~--~~-~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~ 300 (468)
..+.+ ++.|+++++|++||++||.+ |+ |.++++||.+|||||||| +|+||||+||++||+||+|+|++|||++|+
T Consensus 150 ~~g~~-~i~p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 150 SRGEP-PIAPDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred hcCCC-CccCCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 87654 77799999999999999987 55 589999999999999999 999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHH
Q 012204 301 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 377 (468)
Q Consensus 301 GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~ 377 (468)
||+||||||+|++||++| ++ ..+++++||++.+++|++||||||||||+.|||+++|+++++++. ++++++
T Consensus 228 GPlHGGAne~v~~ml~ei----~~--~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~ 301 (390)
T COG0372 228 GPLHGGANEAVMKMLEEI----GS--SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLY 301 (390)
T ss_pred CCccCChHHHHHHHHHHH----cc--cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHH
Confidence 999999999999999987 53 233499999999999999999999999999999999999999984 455899
Q ss_pred HHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccch
Q 012204 378 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 457 (468)
Q Consensus 378 ~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~ 457 (468)
+++.++|+++.+ ..++ .|++|||||||+|++++.||||. ++||+||++||++||+||++||+.++.+|+||++.|+
T Consensus 302 ~~a~~~e~~~l~--~~~~-~k~l~PNvDfysg~v~~~lGiP~-~~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~ 377 (390)
T COG0372 302 EIAEELEEIALE--DLGF-EKKLYPNVDFYSGIVYRALGIPT-DMFTPLFAIARTVGWIAHWIEQKEDGNKIIRPRALYT 377 (390)
T ss_pred HHHHHHHHHHHH--hhhc-ccCCCCccccchHHHHHHcCCCH-HhhhhhhhhhhHHHHHHHHHHHHhccCCccCChhhhc
Confidence 999999999965 2333 89999999999999999999996 8999999999999999999999999668999999999
Q ss_pred hHHHHHhh
Q 012204 458 DWIEKNCK 465 (468)
Q Consensus 458 ~~~~~~~~ 465 (468)
|...+.+.
T Consensus 378 G~~~r~~~ 385 (390)
T COG0372 378 GPEERDYV 385 (390)
T ss_pred Cccccccc
Confidence 99877653
No 10
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=3.7e-98 Score=773.03 Aligned_cols=362 Identities=28% Similarity=0.440 Sum_probs=331.0
Q ss_pred ccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012204 73 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 73 ~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 151 (468)
..||+||.+++|.||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~~L~~~~~l 76 (382)
T cd06107 6 DPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMV 76 (382)
T ss_pred CCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCC
Confidence 35999999999999999999996 99999999999985 599999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCC---CchHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 012204 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW---EPTYEDSLNLIARVPVVAAYVYQRIYKDG 228 (468)
Q Consensus 152 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~---e~~~e~al~liA~~p~iaa~iyr~~~~~~ 228 (468)
|+.|.++|++||+++|||++|+++|++|+++++.......| +.|| +..++++++|||++|+|+|++||++.+ .
T Consensus 77 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g-~ 152 (382)
T cd06107 77 PESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIG-R 152 (382)
T ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99999999999999999999999999999865432111112 4455 466778999999999999999998754 3
Q ss_pred cccCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhcccc
Q 012204 229 KIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 301 (468)
Q Consensus 229 ~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~G 301 (468)
++++|++++||++||++||++ |+++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+|
T Consensus 153 ~~~~P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~G 231 (382)
T cd06107 153 PFVYPRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALYG 231 (382)
T ss_pred CCCCCCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 588999999999999999975 56889999999999999998 9999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHH
Q 012204 302 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQ 378 (468)
Q Consensus 302 plHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~ 378 (468)
|+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++
T Consensus 232 plHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 304 (382)
T cd06107 232 PLHGGANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLK 304 (382)
T ss_pred CcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999887 5 568999999999999999999999999999999999999999874 4589999
Q ss_pred HHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcC-CCcccCCccch
Q 012204 379 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTL 457 (468)
Q Consensus 379 la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pi~RP~s~~~ 457 (468)
++++||+++.+ +++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ .+|+||+++|+
T Consensus 305 ~a~~ie~~~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~ 381 (382)
T cd06107 305 VAMELERIALE--DEYFVSRKLYPNVDFYSGFIYKALGFPP-EFFTVLFAVARTSGWMAHWREMMEDPLQRIWRPRQVYT 381 (382)
T ss_pred HHHHHHHHHHH--HhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhCCCCceeCcccccC
Confidence 99999998755 5567789999999999999999999996 99999999999999999999999986 57999999998
Q ss_pred h
Q 012204 458 D 458 (468)
Q Consensus 458 ~ 458 (468)
|
T Consensus 382 G 382 (382)
T cd06107 382 G 382 (382)
T ss_pred C
Confidence 6
No 11
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=9.7e-98 Score=770.41 Aligned_cols=362 Identities=27% Similarity=0.408 Sum_probs=330.6
Q ss_pred ccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012204 73 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 73 ~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 151 (468)
..||+|+.+++|+||+||+++|+ +||||+|+||++++ .||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~l 76 (384)
T cd06116 6 DPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVYDITRHTMT 76 (384)
T ss_pred CCCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 35999999999999999999996 99999999999986 499999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc
Q 012204 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 231 (468)
Q Consensus 152 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~ 231 (468)
|+.+.+++++||+++|||++|+++|++|++++++...+ ...+...+++++|||++|+|+|++||++++. +++
T Consensus 77 p~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~-~~~ 148 (384)
T cd06116 77 HENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRHRLGL-PYV 148 (384)
T ss_pred CHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Ccc
Confidence 99999999999999999999999999999876553211 1123456678999999999999999988753 588
Q ss_pred CCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccc
Q 012204 232 PKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 304 (468)
Q Consensus 232 ~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplH 304 (468)
+|++++||++||++||++ |+++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|
T Consensus 149 ~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~GplH 227 (384)
T cd06116 149 LPDNDLSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLH 227 (384)
T ss_pred CCCCCCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCcc
Confidence 999999999999999975 57889999999999999998 9999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHH
Q 012204 305 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVS 381 (468)
Q Consensus 305 GGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~ 381 (468)
|||||+|++||.++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++. +.+++++++.
T Consensus 228 GGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~ 300 (384)
T cd06116 228 GGANEAVLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAV 300 (384)
T ss_pred cchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999999886 5 468899999999999999999999999999999999999998874 4578999999
Q ss_pred HHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcC-CCcccCCccchhHH
Q 012204 382 KLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWI 460 (468)
Q Consensus 382 ~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pi~RP~s~~~~~~ 460 (468)
++|+++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ .+|+||++.|+|..
T Consensus 301 ~~e~~~~~--~~~~~~k~l~pNvD~ysa~l~~~lGip~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~~ 377 (384)
T cd06116 301 ELEKIALE--DEYFISRKLYPNVDFYSGLIYQALGFPT-EAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGPR 377 (384)
T ss_pred HHHHHHHH--hhhhcccCCCCChHHHHHHHHHHhCCCh-hhccchhhhhhhchHHHHHHHHHhCcCCcccCccccccCCC
Confidence 99998865 5677789999999999999999999996 99999999999999999999999864 57999999999965
Q ss_pred HH
Q 012204 461 EK 462 (468)
Q Consensus 461 ~~ 462 (468)
.+
T Consensus 378 ~~ 379 (384)
T cd06116 378 DR 379 (384)
T ss_pred CC
Confidence 44
No 12
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=1.1e-96 Score=755.18 Aligned_cols=346 Identities=25% Similarity=0.348 Sum_probs=327.4
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 499999999999999999999 699999999999986 4999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.+.++|++| +++|||++|+++|++++.+ ..++++++|+|++|+|+|++||+..+. +++.
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~~~g~-~~~~ 131 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRLSRGK-QPIA 131 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHHHcCC-CCcC
Confidence 9999999999 8999999999999999752 246789999999999999999987653 5889
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||++
T Consensus 132 p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~ 210 (349)
T cd06109 132 PDPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGP 210 (349)
T ss_pred CCCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHH
Confidence 99999999999999986 78889999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 390 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~ 390 (468)
|++||+++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++..++++++++++||+++.++
T Consensus 211 v~~~l~ei----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~ 283 (349)
T cd06109 211 VLDMLDAI----G---TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALAL 283 (349)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 99999887 4 4689999999999999999999999999999999999999999988899999999999999888
Q ss_pred HHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchh
Q 012204 391 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 458 (468)
Q Consensus 391 ~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~ 458 (468)
+.++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|
T Consensus 284 ~~~~~~~r~l~pNvD~~sg~l~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G 349 (349)
T cd06109 284 LREYKPGRPLETNVEFYTALLLEALGLPR-EAFTPTFAAGRTAGWTAHVLEQARTG-RLIRPQSRYVG 349 (349)
T ss_pred HHHhcCCCCCCCCchhhHHHHHHHhCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 88888899999999999999999999996 99999999999999999999999987 58899999986
No 13
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=3e-96 Score=764.17 Aligned_cols=375 Identities=27% Similarity=0.403 Sum_probs=332.7
Q ss_pred HHHHHHHhhCCccccceehhccccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh
Q 012204 51 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 129 (468)
Q Consensus 51 ~~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~ 129 (468)
.+++++.+.| ..++ ..||+|+.+++|+||+||+++|+ +||||+|+||+++. .||||+||||+
T Consensus 19 ~~~~~~~~~~-----~~~~---~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~ 81 (412)
T TIGR01798 19 DIRKLYKQTG-----LFTF---DPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCYLLLN 81 (412)
T ss_pred hhHhhhhcCC-----CCcC---CCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHc
Confidence 3666666543 3333 46999999999999999999996 99999999999985 49999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHH
Q 012204 130 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNL 209 (468)
Q Consensus 130 G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~l 209 (468)
|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+.+++.. .+.++. +...+++++|
T Consensus 82 G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~----~~~~~~---~~~~~~a~~l 154 (412)
T TIGR01798 82 GELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYHDS----LDINDP---RHREIAAIRL 154 (412)
T ss_pred CCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCccc----cccCCH---HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998643210 011111 3445689999
Q ss_pred HHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhh
Q 012204 210 IARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVA 282 (468)
Q Consensus 210 iA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvva 282 (468)
||++|+|+|++||++.+ .++++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++
T Consensus 155 iA~~p~i~A~~yr~~~g-~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~a 232 (412)
T TIGR01798 155 IAKIPTLAAMSYKYSIG-QPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAG 232 (412)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeee
Confidence 99999999999997654 3588999999999999999974 57789999999999999998 999999999999
Q ss_pred ccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccCcCCCCCCCCCccH
Q 012204 283 SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRY 360 (468)
Q Consensus 283 St~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa 360 (468)
||++|+|+|++|||++|+||+|||||++|++||.++ + +++++++||++.++++ ++||||||||||..|||+
T Consensus 233 St~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa 305 (412)
T TIGR01798 233 SSGANPFACIAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRA 305 (412)
T ss_pred cCCCCHHHHHHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccH
Confidence 999999999999999999999999999999999886 5 4689999999999887 599999999999999999
Q ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhH
Q 012204 361 TCQREFALKHL-----PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGI 435 (468)
Q Consensus 361 ~~L~~~a~~~~-----~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~Gw 435 (468)
++|+++++++. ..++++++++++++++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||
T Consensus 306 ~~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lFaisR~~Gw 382 (412)
T TIGR01798 306 KVMRETCHEVLKELGLHDDPLFKLAMELEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIPT-SMFTVIFALARTVGW 382 (412)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhhhhH
Confidence 99999998752 247899999999998765 4677889999999999999999999996 999999999999999
Q ss_pred HHHHHHHHHcC-CCcccCCccchhHHH
Q 012204 436 CSQLIWDRALG-LPLERPKSVTLDWIE 461 (468)
Q Consensus 436 lAH~ieq~~~~-~pi~RP~s~~~~~~~ 461 (468)
+||++||...+ .+|+||+++|+|...
T Consensus 383 ~AH~~Eq~~~~~~~l~RP~~~Y~G~~~ 409 (412)
T TIGR01798 383 ISHWSEMISDPGQKIGRPRQLYTGEEQ 409 (412)
T ss_pred HHHHHHHHhCCCCcccCchhccCCCCC
Confidence 99999999974 579999999998643
No 14
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=5e-96 Score=755.77 Aligned_cols=354 Identities=25% Similarity=0.363 Sum_probs=324.8
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+||.+++|.||.+|+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 10 ~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp 80 (378)
T PRK12351 10 VALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLP 80 (378)
T ss_pred CCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999988 699999999999986 4999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.|.++|++||+++|||++|+++|++|+++++.. .+..++..++++++|||++|+|+|++||+..+ ++++.
T Consensus 81 ~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~--------~~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~-~~~~~ 151 (378)
T PRK12351 81 AAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEK--------EDHNFSGARDIADRLLASLGSILLYWYHYSHN-GRRIE 151 (378)
T ss_pred HHHHHHHHhCCccCCHHHHHHHHHHhhcccCccc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC
Confidence 9999999999999999999999999999865432 11224567889999999999999999999876 44454
Q ss_pred -CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHH
Q 012204 233 -KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 309 (468)
Q Consensus 233 -p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e 309 (468)
|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 152 p~~~~ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e 230 (378)
T PRK12351 152 VETDDDSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANE 230 (378)
T ss_pred CCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHH
Confidence 57789999999999976 78999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHh
Q 012204 310 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 386 (468)
Q Consensus 310 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~---~~~d~~~~la~~ie~~ 386 (468)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .+++++++++++++++
T Consensus 231 ~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~ 303 (378)
T PRK12351 231 VAFEIQQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETV 303 (378)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999876 5 56899999999999999999999999999999999999999986 3567999999999998
Q ss_pred hhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 387 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 387 ~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
+.+ .|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|.-.+
T Consensus 304 ~~~-------~k~l~pNvD~ysg~l~~~lG~p~-~~~t~lF~~sR~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 370 (378)
T PRK12351 304 MWE-------EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVISRTTGWAAHVIEQRQDN-KIIRPSANYTGPEDR 370 (378)
T ss_pred HHH-------HhCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHHHHHHHHHHHHHHHhcC-CccCCcceecCCCCC
Confidence 854 37999999999999999999996 99999999999999999999999988 588999999996544
No 15
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=9.7e-96 Score=762.39 Aligned_cols=372 Identities=26% Similarity=0.416 Sum_probs=333.2
Q ss_pred HHHHHHhhCCccccceehhccccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 012204 52 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 130 (468)
Q Consensus 52 ~~~~~~~~g~~~~g~~t~~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G 130 (468)
+++++++.| .+++| .||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|
T Consensus 33 ~~~~~~~~~-----~~~~~---~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva~LLl~G 95 (419)
T PRK05614 33 IRKLYGSTG-----YFTYD---PGFTSTASCESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVCYLLLYG 95 (419)
T ss_pred hHhhhhccC-----CcccC---CccCCceeeeeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 667777643 44544 5999999999999999999996 99999999999986 499999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHH
Q 012204 131 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 210 (468)
Q Consensus 131 ~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~li 210 (468)
+|||++|+++|+++|.+++.+|+.+.++|+++|+++|||++|+++|++|+.++ ++...+.+. +...+++++||
T Consensus 96 ~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~------~~~~~~~~~-~~~~~~a~rli 168 (419)
T PRK05614 96 ELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFY------HDSLDINDP-EHREIAAIRLI 168 (419)
T ss_pred cCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcC------ccccCCCCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 222222233 34567899999
Q ss_pred HhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhc
Q 012204 211 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 283 (468)
Q Consensus 211 A~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaS 283 (468)
|++|+|+|++||++.+ .++++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++|
T Consensus 169 a~~p~i~A~~~r~~~g-~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaS 246 (419)
T PRK05614 169 AKMPTLAAMAYKYSIG-QPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGS 246 (419)
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhc
Confidence 9999999999998654 3588999999999999999954 46778999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--CCCcccCcCCCCCCCCCccHH
Q 012204 284 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGKVVPGFGHGVLRKTDPRYT 361 (468)
Q Consensus 284 t~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~--~g~~IpGfGH~vyr~~DPRa~ 361 (468)
|++|+|+|++|||++|+||+|||||++|++||+++ + +++++++||+++++ +|++||||||||||..|||++
T Consensus 247 t~adlysav~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 319 (419)
T PRK05614 247 SGANPFACIAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAK 319 (419)
T ss_pred cCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999887 5 46899999999976 456999999999999999999
Q ss_pred HHHHHHHhh---CC-CChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHH
Q 012204 362 CQREFALKH---LP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICS 437 (468)
Q Consensus 362 ~L~~~a~~~---~~-~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlA 437 (468)
+|+++++++ .+ +++++++++++|+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+|
T Consensus 320 ~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p~-~~~t~lFa~~R~~Gw~A 396 (419)
T PRK05614 320 IMRETCHEVLKELGLNDPLLEVAMELEEIALN--DEYFIERKLYPNVDFYSGIILKALGIPT-SMFTVIFALARTVGWIA 396 (419)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--hhhhccCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhHhHHHHHH
Confidence 999999864 33 78999999999998865 6788899999999999999999999996 99999999999999999
Q ss_pred HHHHHHHc-CCCcccCCccchhH
Q 012204 438 QLIWDRAL-GLPLERPKSVTLDW 459 (468)
Q Consensus 438 H~ieq~~~-~~pi~RP~s~~~~~ 459 (468)
|++||+.. +.+|+||+++|+|.
T Consensus 397 H~~Eq~~~~~~~iiRPr~~Y~G~ 419 (419)
T PRK05614 397 HWNEMHSDPEQKIGRPRQLYTGY 419 (419)
T ss_pred HHHHHHhccCCcccCCCccccCC
Confidence 99999987 34799999999974
No 16
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=2.1e-95 Score=749.31 Aligned_cols=353 Identities=25% Similarity=0.357 Sum_probs=323.0
Q ss_pred ccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcH
Q 012204 75 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 153 (468)
Q Consensus 75 Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~ 153 (468)
||+||.+.+|+||++|+++| ++||||+|+||++++ .||||+||||+|+|||++|+++|+++|.+++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 99999999999999999998 599999999999986 49999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCC
Q 012204 154 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 233 (468)
Q Consensus 154 ~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p 233 (468)
.+.++|++||+++|||++|+++|++|++++++.. +...+..++++++|||++|+|+|++||++.+ ++++.|
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~-~~~i~p 143 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKE--------DHPVSGARDIADRLMASLGSILLYWYHYSHN-GKRIEV 143 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCcccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCC
Confidence 9999999999999999999999999998765531 1112456778999999999999999998764 445655
Q ss_pred -CCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 234 -DDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 234 -~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||.
T Consensus 144 ~~~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~ 222 (366)
T cd06117 144 ETDDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEV 222 (366)
T ss_pred CCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHH
Confidence 6689999999999976 78999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~~ 387 (468)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++++++
T Consensus 223 v~~~l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~ 295 (366)
T cd06117 223 AFEIQQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVM 295 (366)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999876 5 568999999999999999999999999999999999999999874 4578999999999987
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
.+ .|++|||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|...+
T Consensus 296 ~~-------~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G~~~~ 361 (366)
T cd06117 296 WE-------EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVIARTTGWSAHIIEQRQDG-KIIRPSANYTGPEDL 361 (366)
T ss_pred HH-------HhCCCcCcHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceecCCCCC
Confidence 43 47999999999999999999996 99999999999999999999999987 588999999996443
No 17
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=3.7e-95 Score=750.09 Aligned_cols=360 Identities=27% Similarity=0.412 Sum_probs=330.8
Q ss_pred cccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012204 72 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 150 (468)
Q Consensus 72 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 150 (468)
+..||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|++.|+.+|.+++.
T Consensus 4 ~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~ 74 (377)
T PRK14036 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEVRMHRR 74 (377)
T ss_pred CCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 346999999999999999999996 89999999999986 49999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 012204 151 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 230 (468)
Q Consensus 151 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~ 230 (468)
+|+.|.++|++||+++|||++|+++|++|+++++.. .....+..++++++|+|++|+|+|++||...+ .++
T Consensus 75 lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~--------~~~~~~~~~~~~~rliA~~p~i~a~~~r~~~g-~~~ 145 (377)
T PRK14036 75 VKYRIRDMMKCFPETGHPMDALQASAAALGLFYSRR--------ALDDPEYIRDAVVRLIAKIPTMVAAFQLIRKG-NDP 145 (377)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 999999999999999999999999999998754321 11123577899999999999999999887654 458
Q ss_pred cCCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccH
Q 012204 231 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 308 (468)
Q Consensus 231 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~ 308 (468)
++||+++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 146 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~ 224 (377)
T PRK14036 146 IQPRDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGAN 224 (377)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChH
Confidence 8999999999999999987 78999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHH
Q 012204 309 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFE 385 (468)
Q Consensus 309 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~---~~~d~~~~la~~ie~ 385 (468)
|+|++||.++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++ .++++++++++++++
T Consensus 225 e~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~ 297 (377)
T PRK14036 225 EDVLAMLEEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELER 297 (377)
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999876 5 56899999999999999999999999999999999999999886 357899999999999
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHHH
Q 012204 386 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 463 (468)
Q Consensus 386 ~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~ 463 (468)
++.+.+ +.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+ +|+||++.|+|...+.
T Consensus 298 ~~~~~~----~~k~l~pNvD~~sa~l~~~lGip~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 369 (377)
T PRK14036 298 VAEERL----GPKGIYPNVDFYSGLVYRKLGIPR-DLFTPIFAIARVAGWLAHWREQLGAN-RIFRPTQIYTGSHNRR 369 (377)
T ss_pred HHHHHh----ccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-cccCCCceecCCCCCC
Confidence 997644 468999999999999999999996 99999999999999999999999987 6999999999975544
No 18
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=3.7e-95 Score=746.31 Aligned_cols=352 Identities=26% Similarity=0.403 Sum_probs=322.3
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+||.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 499999999999999999997 699999999999975 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.|.+++++||+++|||++|+++|++|+++++... -+..++++++|||++|+|+|++||.+.++..+.+
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~~-----------~~~~~~~a~rlia~~p~i~a~~~r~~~~~~~~~p 140 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPENE-----------FSQQYEIAIRLLAIFPSILLYWYHYSHSGKRIET 140 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 99999999999999999999999999987543310 1345689999999999999999998866433345
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|++++||++||++||++ |++...++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++
T Consensus 141 ~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~ 219 (363)
T cd06108 141 ETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANEA 219 (363)
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHHH
Confidence 58889999999999976 78999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~---~~~d~~~~la~~ie~~~ 387 (468)
|++||+++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++ .+++++++++.++++++
T Consensus 220 v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~ 292 (363)
T cd06108 220 AMELIERF----K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVM 292 (363)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999887 4 46889999999999999999999999999999999999999886 35689999999999988
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
.+ .|+++||||||+|+++++||||. +++|++|++||++||+||++||+..+ +|+||++.|+|...+
T Consensus 293 ~~-------~~~l~pNvD~~sa~l~~~lG~p~-~~~t~iF~i~R~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 358 (363)
T cd06108 293 WE-------EKKLFPNLDFYSASAYHFCGIPT-ELFTPIFVMSRVTGWAAHIMEQRANN-RLIRPSADYIGPEPR 358 (363)
T ss_pred HH-------hcCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHHHHHHHHHHHHHHhcC-CCcCccceecCCCCC
Confidence 43 38999999999999999999996 99999999999999999999999987 588999999986443
No 19
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=7e-95 Score=760.68 Aligned_cols=396 Identities=28% Similarity=0.402 Sum_probs=346.2
Q ss_pred hhCHHHHHHHH-HHHHhhCCccccceehhccccccc-----cccceeeecceecCC----------CC-eeecCCCHHHH
Q 012204 43 EMIPEQQERLK-KVKSELGKAQLGNITVDMVIGGMR-----GMTGLLWETSLLDPD----------EG-IRFRGLSIPEC 105 (468)
Q Consensus 43 ~~ip~~~~~~~-~~~~~~g~~~~g~~t~~~~~~Glr-----g~~~~~t~iS~iD~~----------~G-i~yRGy~I~eL 105 (468)
+.+|+++|.+. ++.++|. + ..||+ ||.+.+|+||+||+. +| |+||||+|+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~--------~---~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dL 78 (447)
T PRK14032 10 SELCEKNNKIDPELYDKYD--------V---KRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDL 78 (447)
T ss_pred HHHHHHcCCcCHHHHHHhC--------C---CcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHHH
Confidence 45666666643 2334333 2 36999 999999999999994 47 79999999999
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHH-HHHHHHcCCCCCChHHHHHHHHHHhcccch
Q 012204 106 QKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQSE 184 (468)
Q Consensus 106 ~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~avsaL~~~s~ 184 (468)
++++||+ ++..||||+||||+|+|||++|+++|+++|.+++.+|+. +.++++++| ++|||++|+++|++|+++++
T Consensus 79 a~~~~~~---~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~ 154 (447)
T PRK14032 79 VNGFLKE---KRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDD 154 (447)
T ss_pred Hhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCC
Confidence 9999875 455799999999999999999999999999999999999 899999999 79999999999999998654
Q ss_pred hhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHH--hc-CCc--ccCCCCCCCHHHHHHhhhCC---CChHHHH
Q 012204 185 FQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRI--YK-DGK--IIPKDDSLDYGGNFSHMLGF---DDPKMLE 256 (468)
Q Consensus 185 f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~--~~-~~~--~~~p~~~l~~~~nf~~ml~~---~~~~~~~ 256 (468)
+. .+.+|++.++++++|||++|+|+|++||.. +. ++. +++|++++||++||++||++ |++..++
T Consensus 155 ~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~ 226 (447)
T PRK14032 155 NP--------DDTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEAR 226 (447)
T ss_pred Cc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHH
Confidence 32 124588999999999999999999999942 22 233 45799999999999999975 5788899
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 012204 257 LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW 336 (468)
Q Consensus 257 ~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~ 336 (468)
+||++||||||||++|+||||+|++|||++|+|+|++|||++|+||+|||||++|++||.++.+..++..+++++++|++
T Consensus 227 ~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v~ 306 (447)
T PRK14032 227 LLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYLT 306 (447)
T ss_pred HHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 99999999999997899999999999999999999999999999999999999999999999765555457889999999
Q ss_pred HHHh-----CCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHH-hcCCCCCCCCchhhH
Q 012204 337 KTLN-----SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILT-KLGKVKNPWPNVDAH 407 (468)
Q Consensus 337 ~~l~-----~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~~~~~~~-e~~k~k~l~pNvD~~ 407 (468)
+.++ +|++||||||||||..|||+++|+++++++. +.+++++++.++++++.+++. ++++.|+++||||||
T Consensus 307 ~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDfy 386 (447)
T PRK14032 307 KILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDFY 386 (447)
T ss_pred HHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhhH
Confidence 9987 5689999999999999999999999999874 456789999999998876554 347789999999999
Q ss_pred HHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHHH
Q 012204 408 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 463 (468)
Q Consensus 408 sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~ 463 (468)
+|+++++||||+ ++||++|++||++||+||++||+..+.+|+||++.|+|. .+.
T Consensus 387 sa~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~YvG~-~~~ 440 (447)
T PRK14032 387 SGFVYDMLGIPE-ELYTPLFAIARIVGWSAHRIEELVNGGKIIRPAYKSVLE-RRE 440 (447)
T ss_pred HHHHHHHcCCCh-hhhhhhHHHHhHHHHHHHHHHHHhcCCceecccceeeCC-CCC
Confidence 999999999996 999999999999999999999996555799999999997 443
No 20
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=8.4e-95 Score=747.39 Aligned_cols=359 Identities=28% Similarity=0.434 Sum_probs=332.1
Q ss_pred cccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|+++|+++|.+++.+|
T Consensus 3 ~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~lp 73 (373)
T cd06112 3 PGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQHRRVK 73 (373)
T ss_pred CccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999999996 99999999999875 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
++|.++|++||+++|||++|+++|++|++++++... .+ ++|+..++++++|||++|+|+|++||+..+. +++.
T Consensus 74 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~-----~~-~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~-~~~~ 146 (373)
T cd06112 74 YNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEV-----LK-PNPDYIDAATVKLIAKMPTLVAMWARIRNGD-DPIE 146 (373)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhhccCccccc-----cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCcC
Confidence 999999999999999999999999999988766321 11 4688899999999999999999999876553 5889
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++
T Consensus 147 p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~ 225 (373)
T cd06112 147 PRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANED 225 (373)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHH
Confidence 99999999999999987 78899999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCC----CChHHHHHHHHHHh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP----DDPLFQLVSKLFEV 386 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~----~d~~~~la~~ie~~ 386 (468)
|++||.++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++.. .+++++++.++|++
T Consensus 226 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~ 298 (373)
T cd06112 226 VLEMLEEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVERL 298 (373)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 99999876 5 5689999999999999999999999999999999999999999853 57899999999998
Q ss_pred hhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 387 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 387 ~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
+.+ +++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+.++ +|+||++.|+|...+
T Consensus 299 ~~~----~~~~k~l~pNvd~~s~~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 368 (373)
T cd06112 299 CEE----LLGHKGVYPNVDFYSGIVYKELGIPA-DLFTPIFAVARVAGWLAHWKEQLGDN-RIFRPTQIYIGEIDR 368 (373)
T ss_pred HHH----HhCcCCCCcChHHHHHHHHHHhCcCh-HhhchHHHHHhHHHHHHHHHHHHhcc-CccCCCceecCCCCC
Confidence 854 34668999999999999999999996 99999999999999999999999987 699999999997544
No 21
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=4e-94 Score=740.56 Aligned_cols=356 Identities=25% Similarity=0.358 Sum_probs=328.1
Q ss_pred cccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012204 72 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 72 ~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 151 (468)
+..||+||.+++|+||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|.+++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 457999999999999999986 5999999999999975 599999999999999999999999999999999
Q ss_pred cHHHHHHHHcCC-CCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 012204 152 PDYVYKAIDALP-VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 230 (468)
Q Consensus 152 p~~v~~~i~~lP-~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~ 230 (468)
|+.|.+++.++| +++|||++|+++|++|++++++. .+..|+..++++++|||++|+|+|++||+..+ .++
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~--------~~~~~~~~~~~a~rliA~~p~i~A~~~r~~~g-~~~ 143 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA--------EEESDEARYERAIRIQAKVASLVTAFARVRQG-KEP 143 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC
Confidence 999999999975 69999999999999999876553 12357888999999999999999999998644 358
Q ss_pred cCCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccH
Q 012204 231 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 308 (468)
Q Consensus 231 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~ 308 (468)
++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~ 222 (371)
T PRK14035 144 LKPRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGAN 222 (371)
T ss_pred CCCCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChH
Confidence 8999999999999999976 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 012204 309 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 385 (468)
Q Consensus 309 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~ 385 (468)
++|++||.++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +.+++++++.++++
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 295 (371)
T PRK14035 223 ERVMDMLSEI----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEK 295 (371)
T ss_pred HHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 9999999887 4 468999999999999999999999999999999999999999874 56799999999999
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHHH
Q 012204 386 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 463 (468)
Q Consensus 386 ~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~ 463 (468)
++.+ .||++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||+++|+|...+.
T Consensus 296 ~~~~-------~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 364 (371)
T PRK14035 296 RMKE-------EKGLIPNVDFYSATVYHVMGIPH-DLFTPIFAVSRVAGWIAHILEQYKDN-RIMRPRAKYIGETNRK 364 (371)
T ss_pred HHHH-------hcCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhHHHHHHHHHHHHhcC-CccCCCccccCCCCCC
Confidence 8744 47899999999999999999996 99999999999999999999999977 6999999999976544
No 22
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=1.2e-93 Score=745.18 Aligned_cols=368 Identities=27% Similarity=0.406 Sum_probs=331.9
Q ss_pred cccceeeeccee------cCC----CC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 012204 78 GMTGLLWETSLL------DPD----EG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELR 146 (468)
Q Consensus 78 g~~~~~t~iS~i------D~~----~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~ 146 (468)
||.+++|+||+| |++ +| |+||||+|+||++++||+ ++++||||+||||+|+|||++|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678999999999 899 99 599999999999999874 4568999999999999999999999999999
Q ss_pred hhCCCcHHH-HHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 012204 147 DRATVPDYV-YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIY 225 (468)
Q Consensus 147 ~~~~lp~~v-~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~ 225 (468)
+++.+|+.+ .++++++|. .|||++|+++|++|+.+++. .++.+|+..++++++|||++|+|+|++||.+.
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~--------~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~ 157 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDK--------PDDISLENVLRQSIQLIARLPTIAVYAYQAKR 157 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCC--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 679999995 99999999999999986433 23457999999999999999999999999632
Q ss_pred --cCCc---ccCCCCCCCHHHHHHhhhCC---CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhh
Q 012204 226 --KDGK---IIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 297 (468)
Q Consensus 226 --~~~~---~~~p~~~l~~~~nf~~ml~~---~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~ 297 (468)
.+++ +++|++++||++||++||++ |++..+++||++||||||||++|+||||+|+++||++|+|+|++|||+
T Consensus 158 ~~~~~~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~ 237 (406)
T cd06113 158 HYYDGESLYIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIG 237 (406)
T ss_pred hhccCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHH
Confidence 2222 55799999999999999975 677889999999999999997899999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-----CcccCcCCCCCCCCCccHHHHHHHHHhhC-
Q 012204 298 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG-----KVVPGFGHGVLRKTDPRYTCQREFALKHL- 371 (468)
Q Consensus 298 aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g-----~~IpGfGH~vyr~~DPRa~~L~~~a~~~~- 371 (468)
+|+||+|||||++|++||.++.+..++..+++++++||++.++++ ++||||||||||..|||+++|+++++++.
T Consensus 238 al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~ 317 (406)
T cd06113 238 SLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAK 317 (406)
T ss_pred HccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999765565557889999999999876 59999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhhhhhHHh-cCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCC
Q 012204 372 --PDDPLFQLVSKLFEVVPPILTK-LGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLP 448 (468)
Q Consensus 372 --~~d~~~~la~~ie~~~~~~~~e-~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~p 448 (468)
+.+++++++.++++++.+++.+ +++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+.+
T Consensus 318 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~~~ 396 (406)
T cd06113 318 EKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQ-ELYTPLFAVARIVGWCAHRIEELLNSGR 396 (406)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcCCc
Confidence 4567999999999999877654 48899999999999999999999996 9999999999999999999999876557
Q ss_pred cccCCccchh
Q 012204 449 LERPKSVTLD 458 (468)
Q Consensus 449 i~RP~s~~~~ 458 (468)
|+||++.|+|
T Consensus 397 l~RP~~~Y~G 406 (406)
T cd06113 397 IIRPAYKYVG 406 (406)
T ss_pred eeccccccCC
Confidence 9999999986
No 23
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=3.1e-93 Score=734.20 Aligned_cols=353 Identities=26% Similarity=0.399 Sum_probs=324.2
Q ss_pred ccccccccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 73 IGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 73 ~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
..||+||.+.+|.||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 4 ~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 73 (372)
T PRK14034 4 TRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVP 73 (372)
T ss_pred CCCCCCceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999964 6999999999999875 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc
Q 012204 153 DYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 231 (468)
Q Consensus 153 ~~v~~~i~~lP~-~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~ 231 (468)
+.+.+++++||+ ++|||++|+++|++|+.++++.. +...+..++++++|||++|+|+|++||+..+ .+++
T Consensus 74 ~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~~ 144 (372)
T PRK14034 74 GEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEAE--------IMDEEANYRKAVRLQAKVPTIVAAFSRIRKG-LDPV 144 (372)
T ss_pred HHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
Confidence 999999999997 59999999999999998765531 1123567899999999999999999987644 4588
Q ss_pred CCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHH
Q 012204 232 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 309 (468)
Q Consensus 232 ~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e 309 (468)
+|++++||++||++||++ |++.++++||++|||||||| +||||||+|+++||++|+|+|++||+++|+||+|||||+
T Consensus 145 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e 223 (372)
T PRK14034 145 EPRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGANE 223 (372)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHHH
Confidence 999999999999999986 78889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q 012204 310 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 386 (468)
Q Consensus 310 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~ 386 (468)
+|++||+++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +++++++++++++++
T Consensus 224 ~~~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~ 296 (372)
T PRK14034 224 NVMKMLTEI----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEI 296 (372)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999886 5 468999999999999999999999999999999999999999874 567999999999998
Q ss_pred hhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHH
Q 012204 387 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIE 461 (468)
Q Consensus 387 ~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~ 461 (468)
+.+ .|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|.-.
T Consensus 297 ~~~-------~k~l~pNvD~~~a~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~ 362 (372)
T PRK14034 297 VTK-------EKGLPPNVDFYSASVYHCLGIDH-DLFTPIFAISRMSGWLAHILEQYENN-RLIRPRADYVGPTH 362 (372)
T ss_pred HHH-------cCCCCCChHHHHHHHHHHcCCCh-HhccchhHHHhHHHHHHHHHHHHhcC-CccCCCceecCCCC
Confidence 743 47899999999999999999996 99999999999999999999999976 69999999999643
No 24
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=7.8e-93 Score=732.82 Aligned_cols=357 Identities=26% Similarity=0.386 Sum_probs=324.8
Q ss_pred cccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012204 72 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 150 (468)
Q Consensus 72 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 150 (468)
+..||+||++++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 458999999999999999999995 99999999999885 49999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCC-CchHHHHHHHHHhhHHHHHHHHHHHhcCCc
Q 012204 151 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGK 229 (468)
Q Consensus 151 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~-e~~~e~al~liA~~p~iaa~iyr~~~~~~~ 229 (468)
+|+.+.++|++||+++|||++|+++|++|+++++. .+| +..++++++|||++|+|+|++||++.+. +
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~-----------~~~~~~~~~~a~~liA~~p~i~a~~yr~~~g~-~ 142 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKN-----------FKWKENDKEKAISIIAKMATIVANVYRRKEGN-K 142 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 99999999999999999999999999999975321 123 3357899999999999999999987654 4
Q ss_pred ccCCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhcccccccccc
Q 012204 230 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 307 (468)
Q Consensus 230 ~~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA 307 (468)
+++|++++||++||++||.+ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||
T Consensus 143 ~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA 221 (377)
T PRK14037 143 PRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGA 221 (377)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCCh
Confidence 78899999999999999965 88999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---C-CChHHHHHHH
Q 012204 308 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSK 382 (468)
Q Consensus 308 ~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~-~d~~~~la~~ 382 (468)
|++|++||+++ + +++++++|+++.+ ++|++||||||+|||..|||+++|+++++++. + .+++++++.+
T Consensus 222 ~e~v~~~l~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~ 294 (377)
T PRK14037 222 AEEAFKQFVEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQK 294 (377)
T ss_pred HHHHHHHHHHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999876 5 4689999998765 45589999999999999999999999999874 3 4789999999
Q ss_pred HHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 383 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 383 ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
+|+++.+ +++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||+..+.+|+||++.|+|...+
T Consensus 295 ~e~~~~~----~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y~G~~~~ 369 (377)
T PRK14037 295 LEELGIK----QFGSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEHR 369 (377)
T ss_pred HHHHHHH----HhhccCCCCChHHHHHHHHHHcCCCh-hhcchhHHhhhhhHHHHHHHHHHhcCCccccCcceecCCCCC
Confidence 9998754 34568999999999999999999996 999999999999999999999998766899999999996544
No 25
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=7.7e-93 Score=737.79 Aligned_cols=359 Identities=28% Similarity=0.423 Sum_probs=327.4
Q ss_pred cccccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012204 72 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 150 (468)
Q Consensus 72 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 150 (468)
+..||+||.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.
T Consensus 27 ~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~ 97 (400)
T cd06114 27 YDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLYGELPTAEQLQEFREEITRHTL 97 (400)
T ss_pred CCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHccC
Confidence 346999999999999999999996 99999999999985 49999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 012204 151 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 230 (468)
Q Consensus 151 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~ 230 (468)
+|+.+.++|+++|+++|||++|+++|++|+.+++. ...+ ..|+..++++++|||++|+|+|++||++.+. ++
T Consensus 98 lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~------~~~~-~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~-~~ 169 (400)
T cd06114 98 VHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPD------SLDV-NDPEQRELAAIRLIAKVPTIAAMAYRYSIGQ-PF 169 (400)
T ss_pred CCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCcc------cccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 99999999999999999999999999999975432 1111 3477788999999999999999999987653 47
Q ss_pred cCCCCCCCHHHHHHhhhCC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhcccccc
Q 012204 231 IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 303 (468)
Q Consensus 231 ~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~Gpl 303 (468)
+.|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+
T Consensus 170 ~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~Gpl 248 (400)
T cd06114 170 IYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPL 248 (400)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCc
Confidence 8999999999999999974 46889999999999999998 999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccCcCCCCCCCCCccHHHHHHHHHhh---C-CCChHH
Q 012204 304 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALKH---L-PDDPLF 377 (468)
Q Consensus 304 HGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~~L~~~a~~~---~-~~d~~~ 377 (468)
||||+++|++||.++ + +.+++++||++.+++| ++||||||+|||..|||+++|+++++++ . .+++++
T Consensus 249 HGGA~~~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 321 (400)
T cd06114 249 HGGANEAVLEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLL 321 (400)
T ss_pred ccChHHHHHHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999887 4 3478999999999987 5999999999999999999999998875 2 357899
Q ss_pred HHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcC-CCcccCCccc
Q 012204 378 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVT 456 (468)
Q Consensus 378 ~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pi~RP~s~~ 456 (468)
++++++++++.+ .++++.|+++||||||+|+++++||||+ +++|++|++||++||+||++||+..+ .+|+||++.|
T Consensus 322 ~~~~~ie~~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~Y 398 (400)
T cd06114 322 EIAMELEEIALK--DDYFIERKLYPNVDFYSGIILRALGIPT-EMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLY 398 (400)
T ss_pred HHHHHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhhHHHHhHHHHHHHHHHHHhCCCCceeCccccc
Confidence 999999998765 5677889999999999999999999996 99999999999999999999999974 5699999999
Q ss_pred hh
Q 012204 457 LD 458 (468)
Q Consensus 457 ~~ 458 (468)
+|
T Consensus 399 vG 400 (400)
T cd06114 399 TG 400 (400)
T ss_pred CC
Confidence 86
No 26
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=4.9e-90 Score=709.42 Aligned_cols=352 Identities=24% Similarity=0.350 Sum_probs=325.1
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+||++++|+||++|+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999987 699999999999986 4999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.+.++++.||++.|||++++++|++|+.++++. .+..|+...+++++|||++|+|+|++||+..+. .+++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~-~~~~ 142 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSET--------DDSSPDANLAKAIRLLAQLPTVVAADIRRRKGL-DPIP 142 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcC
Confidence 9999999999999999999999999999876542 124578888999999999999999999987543 4788
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~ 221 (362)
T cd06111 143 PDSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEA 221 (362)
T ss_pred CCCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHH
Confidence 99999999999999965 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~~ 387 (468)
|++||+++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++. +.+++++++.++++++
T Consensus 222 ~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~ 294 (362)
T cd06111 222 VMHMMLEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAM 294 (362)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHH
Confidence 99999876 5 467899999999999999999999999999999999999988763 3568999999999877
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHH
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
.+ .||++||||||+|++++.||||. +++|++|++||++||+||++||+.++ +|+||++.|+|.-
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~ 358 (362)
T cd06111 295 VA-------AKGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMARITGWTAHIMEQRADN-ALIRPLSEYNGPE 358 (362)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcCh-hhhhhHHHHHHHHHHHHHHHHHHHcC-CcccCCceeeCCC
Confidence 43 36899999999999999999996 99999999999999999999999987 6999999999864
No 27
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=8.9e-91 Score=715.24 Aligned_cols=348 Identities=33% Similarity=0.540 Sum_probs=300.4
Q ss_pred ccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcH
Q 012204 75 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 153 (468)
Q Consensus 75 Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~ 153 (468)
||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|++||++|+++|+++|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 799999999999974 59999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCC
Q 012204 154 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 233 (468)
Q Consensus 154 ~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p 233 (468)
.|.+++++||+++|||++|+++|++|+.++++ .....+|+..++++++++|++|+|+|++|++..+ .++++|
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g-~~~~~p 143 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVAAIYRHRRG-QPPIPP 143 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHHHHHHHhCC-CCcccc
Confidence 99999999999999999999999999987654 1234568899999999999999999999999854 358889
Q ss_pred CCCCCHHHHHHhhhC--C--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHH
Q 012204 234 DDSLDYGGNFSHMLG--F--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 309 (468)
Q Consensus 234 ~~~l~~~~nf~~ml~--~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e 309 (468)
+++++|++||++|++ + +++..+++||++|||||||| +||||||+|+++||++|+|+|++||+++++||+||||++
T Consensus 144 ~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~ 222 (356)
T PF00285_consen 144 DPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANE 222 (356)
T ss_dssp -TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHH
T ss_pred ccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccH
Confidence 999999999999993 3 68999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q 012204 310 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 386 (468)
Q Consensus 310 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~ 386 (468)
+|++||.++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++. ..+++++++.++|++
T Consensus 223 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~ 295 (356)
T PF00285_consen 223 AAMRMLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEA 295 (356)
T ss_dssp HHHHHHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 999999987 5 578999999999999999999999999999999999999999987 789999999999999
Q ss_pred hhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccC
Q 012204 387 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 452 (468)
Q Consensus 387 ~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP 452 (468)
+.+.+. .|+++||||||+|+++++||||+ +++|++|++||++||+||++||+..+.+|+||
T Consensus 296 ~~~~~~----~~~l~pNvd~~~a~l~~~lG~p~-~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 296 APEDFK----ERKLYPNVDFYSAALLRALGFPP-ELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHHHHH----HHTESB-THHHHHHHHHHTT--G-GGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHh----hccccCchhhHHHHHHHHHhcch-hhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 988653 45799999999999999999996 99999999999999999999999955689999
No 28
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=8.6e-90 Score=709.24 Aligned_cols=353 Identities=27% Similarity=0.392 Sum_probs=322.6
Q ss_pred ccccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012204 73 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 73 ~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 151 (468)
..||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|++.|+++|..++.+
T Consensus 6 ~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~~ 76 (369)
T PRK12349 6 SPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKLKEEYAV 76 (369)
T ss_pred CCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Confidence 3699999999999999999988 699999999999985 499999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc
Q 012204 152 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 231 (468)
Q Consensus 152 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~ 231 (468)
|+.|.++++.+|++.|||++|+++|++++.++++. + +..++...+++++|||++|+|+|++||+..+ .+++
T Consensus 77 p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g-~~~~ 147 (369)
T PRK12349 77 PEGVFNILKALPKETHPMDGLRTGVSALAGYDNDI--E------DRSLEVNKSRAYKLLSKVPNIVANSYHILNN-EEPI 147 (369)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccc--c------ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 99999999999999999999999999999876542 1 1235667889999999999999999998654 3578
Q ss_pred CCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHH
Q 012204 232 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 309 (468)
Q Consensus 232 ~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e 309 (468)
.|+++++|++||++|+++ |++...++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++
T Consensus 148 ~p~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e 226 (369)
T PRK12349 148 EPLKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANE 226 (369)
T ss_pred CCCcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHH
Confidence 999999999999999976 68889999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCC-CCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 012204 310 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL-RKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 385 (468)
Q Consensus 310 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vy-r~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~ 385 (468)
+|++||.++ + +++++++||++.+++|++||||||+|| +..|||+++|++.++++. +..+++++++++++
T Consensus 227 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~ 299 (369)
T PRK12349 227 AVMYMLLEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEK 299 (369)
T ss_pred HHHHHHHHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999876 4 568999999999999999999999999 667999999999987763 34578888888888
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHH
Q 012204 386 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 386 ~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
++.+ .|+++||||||+|++++.||||+ +++|++|++||++||+||++||+..+ +|+||++.|+|..
T Consensus 300 ~~~~-------~~gl~pNvD~~~a~l~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~ 365 (369)
T PRK12349 300 IMEK-------EKGLYPNLDYYAAPVYWMLGIPI-QLYTPIFFSSRTVGLCAHVIEQHANN-RLFRPRVNYIGER 365 (369)
T ss_pred HHHH-------hcCCCCCcHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceeeCCC
Confidence 7743 47899999999999999999996 99999999999999999999999987 5889999999854
No 29
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.4e-89 Score=706.52 Aligned_cols=352 Identities=38% Similarity=0.587 Sum_probs=327.1
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999987 799999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.+.++++.+|++.|||++|+++|++++.++++. .+.+|+...+++++|||++|+|++++|++..+. .++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~-~~~~ 142 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA--------RDKSPEARYEKAIRLIAKLPTIAANIYRNREGL-EIIA 142 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCC
Confidence 9999999999999999999999999999876553 234578888999999999999999999986543 4778
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||++.
T Consensus 143 p~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~ 221 (358)
T cd06118 143 PDPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEA 221 (358)
T ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHH
Confidence 99999999999999987 89999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~d~~~~la~~ie~~~ 387 (468)
|++||+++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++.. ++++++++.++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~ 294 (358)
T cd06118 222 VLKMLLEI----G---TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIA 294 (358)
T ss_pred HHHHHHHh----C---CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999887 4 3478999999999999999999999999999999999999998854 589999999999998
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccc
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 456 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~ 456 (468)
.+.. ..|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||+++|
T Consensus 295 ~~~~----~~r~l~pNvd~~~~~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~Y 358 (358)
T cd06118 295 LEVL----GEKGIYPNVDFYSGVVYKALGFPT-ELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAEY 358 (358)
T ss_pred HHhh----cCCCCCcChHHHHHHHHHHcCcCH-HHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCcccC
Confidence 7632 237999999999999999999996 999999999999999999999999987799999987
No 30
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=8.6e-89 Score=700.01 Aligned_cols=350 Identities=27% Similarity=0.419 Sum_probs=324.4
Q ss_pred cccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+|+++++|+||.+|+++|+ +||||+|+||+++. +||||+||||+|++|+++|++.|+++|..++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 4999999999999999999994 99999999999875 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.+.++++++|++.|||++|+++|++++.+++.. .+..|+..++++++|||++|+|+|++|+...+ .+++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~--------~~~~~~~~~~~a~~lla~~p~i~a~~~~~~~~-~~~~~ 142 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEA--------DDMSREANLRKAIRLIAKMPTIVAAFHRIRNG-LEPVA 142 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999998764331 23457888999999999999999999987644 45789
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|+++++|++||++|+++ |++...++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~ 221 (356)
T cd06110 143 PDPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANER 221 (356)
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHH
Confidence 99999999999999975 78889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~~ 387 (468)
|++||+++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +++++++++.++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~ 294 (356)
T cd06110 222 VMKMLLEI----G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAM 294 (356)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999887 4 467899999999999999999999999999999999999999873 5679999999999988
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchh
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 458 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~ 458 (468)
.+ .||++||||+|+|++++.||||+ +++|++|++||++||+||++||+.++ +|+||+++|+|
T Consensus 295 ~~-------~~~l~pNvd~~~a~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G 356 (356)
T cd06110 295 RD-------EKGLNPNVDFYSASVYYMLGIPV-DLFTPIFAISRVSGWCAHILEQYFNN-RLIRPRAEYVG 356 (356)
T ss_pred HH-------ccCCCcChHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHHcC-CccCCccccCC
Confidence 55 37999999999999999999996 99999999999999999999999986 69999999986
No 31
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=1.5e-88 Score=700.49 Aligned_cols=355 Identities=28% Similarity=0.442 Sum_probs=327.0
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
.||+|+++++|+||++|+++| ++||||+|.||+++. +||||+||||+|++|+++|++.|.++|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 499999999999999999999 699999999999875 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
+.+.++++.||++.|||++|+++|++|+.+++.. + +..++...+++++|||++|+|+|++||+..+ .+++.
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~~~~~g-~~~~~ 142 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEA--F------GHTPEEARDIAIRLIAKLPTIVAYWYRIRNG-LEIVA 142 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcC
Confidence 9999999999999999999999999999876542 1 1124567889999999999999999998754 45789
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~ 221 (368)
T TIGR01800 143 PKEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEA 221 (368)
T ss_pred CCCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHH
Confidence 99999999999999976 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~~~ 387 (468)
|++||.++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +++++++++.++++++
T Consensus 222 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 294 (368)
T TIGR01800 222 VMAMLDEI----G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVM 294 (368)
T ss_pred HHHHHHHh----c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999876 4 457899999999999999999999999999999999999999873 5688999999999988
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHHH
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 463 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~~ 463 (468)
.+ .||++||||||+|++++.||||+ +++|++|++||++||+||++||+..+ +|+||++.|+|...+.
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lg~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~~ 361 (368)
T TIGR01800 295 EK-------EKGIYPNVDFYSGSVYYSMGIPT-DLFTPIFAMSRVSGWTAHIIEQVENN-RLIRPRADYVGPEERK 361 (368)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcCH-HHhhhHHHHHHHHHHHHHHHHHHhcC-CccCccccccCCCCCC
Confidence 54 37899999999999999999996 99999999999999999999999887 5999999999975543
No 32
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=2.1e-88 Score=692.55 Aligned_cols=337 Identities=23% Similarity=0.297 Sum_probs=296.2
Q ss_pred cccccccceeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHH---HHHHHHHhhC
Q 012204 74 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVD---GLSKELRDRA 149 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~---~f~~~L~~~~ 149 (468)
.||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||+.|.+ .++..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 6999999999999999999995 99999999999986 499999999999999987544 3333322
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCc
Q 012204 150 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 229 (468)
Q Consensus 150 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~ 229 (468)
..+..+.+.+.. .|||+.|++++ + . ...+++++|||++|+|+|++||++.++.+
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~------~-----------~-----~~~~~~~rliA~~pti~a~~~r~~~g~~~ 124 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL------D-----------I-----DDLTARLDLARASVMALSAVAQSARGIGQ 124 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc------C-----------C-----CCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 233334333333 45777776643 0 0 11357899999999999999999876346
Q ss_pred ccCCCCCCCHHHHHHhhhCC-----CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccc
Q 012204 230 IIPKDDSLDYGGNFSHMLGF-----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 304 (468)
Q Consensus 230 ~~~p~~~l~~~~nf~~ml~~-----~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplH 304 (468)
+++|+++++|++||++||.+ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|
T Consensus 125 ~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~GplH 203 (353)
T PRK12350 125 PAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGPLH 203 (353)
T ss_pred CcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcc
Confidence 88999999999999999964 47889999999999999998 9999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHH
Q 012204 305 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLF 384 (468)
Q Consensus 305 GGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie 384 (468)
|||||.|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +++++++.++|
T Consensus 204 GGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~le 274 (353)
T PRK12350 204 GGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEAVE 274 (353)
T ss_pred cChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHHHH
Confidence 99999999999886 5 468999999999999999999999999999999999999999985 68999999999
Q ss_pred HhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHH
Q 012204 385 EVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 460 (468)
Q Consensus 385 ~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~ 460 (468)
+++.+.+.+++..|+++||||||+|++++.||||. ++||++|++||++||+||++||+..| +|+||++.|+|..
T Consensus 275 ~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~-~~ft~lFai~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~ 348 (353)
T PRK12350 275 QAALAELRERRPDRPLETNVEFWAAVLLDFAGVPA-HMFTAMFTCGRTAGWSAHILEQKRTG-RLVRPSARYVGPA 348 (353)
T ss_pred HHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhhhHHHHHHHHHHHHhcC-CCcCCCcceeCCC
Confidence 99988766777789999999999999999999996 99999999999999999999999987 5899999999864
No 33
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=4.4e-88 Score=697.44 Aligned_cols=356 Identities=24% Similarity=0.340 Sum_probs=327.5
Q ss_pred cccccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012204 72 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 150 (468)
Q Consensus 72 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 150 (468)
+..||+||.+++|+||++|+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+++|.+++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 55899999999999999999987 699999999999985 49999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 012204 151 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 230 (468)
Q Consensus 151 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~ 230 (468)
+|+.+.++++.+|++.|||++++++|++++.++++. + +..|+...+++++|||++|+|+|++|++..+ ..+
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~ 150 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEA--D------DSSPEANLAKALRLFAVLPTIVAADQRRRRG-LDP 150 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999999876542 1 2346778899999999999999999998754 357
Q ss_pred cCCCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccH
Q 012204 231 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 308 (468)
Q Consensus 231 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~ 308 (468)
++|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||+
T Consensus 151 ~~p~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~ 229 (375)
T PRK14033 151 IAPRSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGAN 229 (375)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChH
Confidence 8999999999999999965 68889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 012204 309 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 385 (468)
Q Consensus 309 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~d~~~~la~~ie~ 385 (468)
+.|++||.++ + +++++++||++.+++|++||||||++||..|||+++|++.++++. +.+++++++.++++
T Consensus 230 e~~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~ 302 (375)
T PRK14033 230 EAVMHTMLEI----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEK 302 (375)
T ss_pred HHHHHHHHHh----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 9999999886 5 568999999999999999999999999999999999999988763 45789999999999
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchhHHHH
Q 012204 386 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 462 (468)
Q Consensus 386 ~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~~~~~ 462 (468)
++.+ .+|++||||||+|++++.||||+ +++|++|++||++||+||++||+.++ +|+||++.|+|...+
T Consensus 303 ~~~~-------~~gl~pNvD~~~a~l~~~lGip~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 370 (375)
T PRK14033 303 AMAE-------ATGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMSRITGWTAHIMEQRASN-ALIRPLSEYNGPEQR 370 (375)
T ss_pred HHHH-------HhCCCCCcHHHHHHHHHHcCcCc-hhhhHHHHHHHHHHHHHHHHHHHhcC-CccccCceecCCCCC
Confidence 8854 36899999999999999999996 99999999999999999999999987 689999999997544
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=1.4e-72 Score=558.54 Aligned_cols=259 Identities=43% Similarity=0.673 Sum_probs=240.7
Q ss_pred cccccccceeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012204 74 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 152 (468)
Q Consensus 74 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 152 (468)
+||+|+++++|+||.+|+++| ++||||+|+||+++. +||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCC-------------------
Confidence 499999999999999999998 699999999999986 599999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 012204 153 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 232 (468)
Q Consensus 153 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~ 232 (468)
T Consensus 53 -------------------------------------------------------------------------------- 52 (265)
T cd06101 53 -------------------------------------------------------------------------------- 52 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHH
Q 012204 233 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 310 (468)
Q Consensus 233 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~ 310 (468)
+|++||++|+++ +++.++++||.+||+||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 53 -----~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~ 126 (265)
T cd06101 53 -----SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEA 126 (265)
T ss_pred -----cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHH
Confidence 799999999987 78999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 012204 311 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 387 (468)
Q Consensus 311 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~d~~~~la~~ie~~~ 387 (468)
|++||.++.+ . ..++++++|++.+++|++||||||+|||..|||+++|+++++++.. +++++++++++++++
T Consensus 127 ~~~~l~~i~~----~-~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~ 201 (265)
T cd06101 127 VLKMLEEIGT----P-KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIA 201 (265)
T ss_pred HHHHHHHhCc----c-ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999998732 1 2368899999999999999999999999999999999999999754 589999999999988
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccc
Q 012204 388 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 456 (468)
Q Consensus 388 ~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~ 456 (468)
.+.. ..|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||++.|
T Consensus 202 ~~~~----~~k~l~pNvd~~~a~v~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y 265 (265)
T cd06101 202 PEVL----YEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVSRAVGWLAHLIEQREDGQRIIRPRAEY 265 (265)
T ss_pred HHHh----hccCCCCChHHHHHHHHHHhCCCh-HhhhhHHHHHhHhHHHHHHHHHHhcCCCccCCCccC
Confidence 7632 238999999999999999999996 999999999999999999999999986799999987
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.5e-64 Score=503.51 Aligned_cols=266 Identities=26% Similarity=0.329 Sum_probs=234.0
Q ss_pred cccceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 012204 78 GMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYK 157 (468)
Q Consensus 78 g~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~ 157 (468)
|.++++|.||.|+.+ +++||||++.||+++. +||+|+||||+|++|
T Consensus 17 g~~~~~t~It~i~~~-~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~------------------------ 62 (282)
T cd06102 17 GEPVLESAITLITEG-RLFYRGRDAVELAETA---------TLEEVAALLWDGDEA------------------------ 62 (282)
T ss_pred CCceEEeeeEEEeCC-eeEEcCccHHHHHhcC---------CHHHHHHHHHcCCch------------------------
Confidence 557899999999864 4999999999999986 599999999999999
Q ss_pred HHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Q 012204 158 AIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 237 (468)
Q Consensus 158 ~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l 237 (468)
. ..+++++. .. .+ .+.++.
T Consensus 63 ---------------~-------------------------------~~l~~~~~------~~------~~---~~~~~~ 81 (282)
T cd06102 63 ---------------A-------------------------------RLLRLLAA------AL------LG---AAPSDA 81 (282)
T ss_pred ---------------H-------------------------------HHHHHHHH------Hh------cc---CCCCcc
Confidence 0 01111111 11 00 223467
Q ss_pred CHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHH
Q 012204 238 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 317 (468)
Q Consensus 238 ~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~ 317 (468)
++++||++|++.+ +...++||++|||+|||| +|||||++|+++||++|+|+|++|||++|+||+||||++.|++||++
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e 159 (282)
T cd06102 82 PVHRRLARAWGLD-PAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDE 159 (282)
T ss_pred cHHHHHHHHhcCC-HHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 8999999999874 568899999999999998 99999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCC
Q 012204 318 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKV 397 (468)
Q Consensus 318 i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~ 397 (468)
+ + +.++++++|++.+++|++||||||++||..|||+++|+++++++.. ++++++.++++++.+ .
T Consensus 160 ~----~---~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-------~ 223 (282)
T cd06102 160 A----L---RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARA-------L 223 (282)
T ss_pred h----c---CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-------H
Confidence 7 3 2468899999999999999999999999999999999999999866 999999999999865 2
Q ss_pred CCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccchh
Q 012204 398 KNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 458 (468)
Q Consensus 398 k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~~~ 458 (468)
++++||||||++++++.||||+ ++++++|++||++||+||++||+.++ +++||++.|+|
T Consensus 224 ~gl~pNvD~a~a~l~~~lG~p~-~~~~~lF~~~R~~GwiAH~~Eq~~~~-~liRP~~~Y~G 282 (282)
T cd06102 224 TGARPNIDFALAALTRALGLPA-GAAFALFALGRSAGWIAHALEQRAQG-KLIRPRARYVG 282 (282)
T ss_pred HCCCCChHHHHHHHHHHcCCCh-hhcchHHHHHHHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 5799999999999999999996 89999999999999999999999997 69999999986
No 36
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=9.8e-59 Score=446.32 Aligned_cols=208 Identities=41% Similarity=0.650 Sum_probs=192.0
Q ss_pred CHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHH
Q 012204 238 DYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 315 (468)
Q Consensus 238 ~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l 315 (468)
||++||++|+++ |+++++++||.+||+|+||| +|+||||+|+++||++|+|+|++|||++++||+||||++.|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999987 89999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHH
Q 012204 316 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILT 392 (468)
Q Consensus 316 ~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~d~~~~la~~ie~~~~~~~~ 392 (468)
+++ +.. ..++++++|++.+++|++||||||++||..|||+++|+++++++.. .++++++++++|+++.+..
T Consensus 80 ~e~----~~~-~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~- 153 (213)
T cd06099 80 EEI----GTP-KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVL- 153 (213)
T ss_pred HHh----CCc-ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 987 321 2368899999999999999999999999999999999999998753 3599999999999987633
Q ss_pred hcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCccc
Q 012204 393 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 456 (468)
Q Consensus 393 e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s~~ 456 (468)
+.|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||++.|
T Consensus 154 ---~~r~l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~Y 213 (213)
T cd06099 154 ---YEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSEY 213 (213)
T ss_pred ---hccCCCCChHHHHHHHHHHcCcCH-HhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCcccC
Confidence 238999999999999999999996 999999999999999999999999987899999987
No 37
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=2.3e-57 Score=449.59 Aligned_cols=243 Identities=23% Similarity=0.241 Sum_probs=216.4
Q ss_pred ceeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 012204 81 GLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAID 160 (468)
Q Consensus 81 ~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~ 160 (468)
-..|.||++|+++ ++||||+|.||+++. +|+|++||||+|++|+++|+
T Consensus 8 ~~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~---------------------- 55 (263)
T PRK06224 8 WWRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEA---------------------- 55 (263)
T ss_pred CCceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHH----------------------
Confidence 4568999999987 999999999999886 49999999999999987664
Q ss_pred cCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHH
Q 012204 161 ALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG 240 (468)
Q Consensus 161 ~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~ 240 (468)
T Consensus 56 -------------------------------------------------------------------------------- 55 (263)
T PRK06224 56 -------------------------------------------------------------------------------- 55 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhcCCCCCCCchhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHH
Q 012204 241 GNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 320 (468)
Q Consensus 241 ~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~ 320 (468)
++|+.+||++|||| +|||||++|+++||++|+|+|++||++++ ||+||||+++|++||.++..
T Consensus 56 ---------------r~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~ 118 (263)
T PRK06224 56 ---------------RLLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAA 118 (263)
T ss_pred ---------------HHHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHh
Confidence 24666789999998 99999999999999999999999999999 99999999999999999976
Q ss_pred hcCCCCC-hhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCC
Q 012204 321 ECGENVT-TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKN 399 (468)
Q Consensus 321 ~ig~~~s-~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~ 399 (468)
.++++.+ +++++++|++.+++|++||||||++||..|||+++|+++++++...+++++++.++++++.+. ++|+
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~ 193 (263)
T PRK06224 119 AADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAAA-----KGKP 193 (263)
T ss_pred hccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-----cCCC
Confidence 5543223 357899999999999999999999999999999999999999887789999999999988652 3578
Q ss_pred CCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCC------ccchhH
Q 012204 400 PWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPK------SVTLDW 459 (468)
Q Consensus 400 l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~------s~~~~~ 459 (468)
++||||+|+|+++++||||+ ++++++|++||++||+||++||+.++. .+||. ..|+|.
T Consensus 194 l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~~-~~r~~~~~~~~~~Y~G~ 257 (263)
T PRK06224 194 LPLNVDGAIAAILADLGFPP-ALARGLFVISRAAGLVAHVWEELQQPI-GFRIWDPAEEAVEYTGP 257 (263)
T ss_pred CCccHHHHHHHHHHHcCCCh-HHHhHHHHHHHHHHHHHHHHHHHhCCC-CcCCCCChhhcceecCC
Confidence 99999999999999999996 899999999999999999999999873 44555 677774
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=4e-50 Score=390.13 Aligned_cols=208 Identities=25% Similarity=0.302 Sum_probs=190.0
Q ss_pred CCCHHHHHHhhhCC--CChHHHHHHHHHHHHhcCCCCC-CCchhHHHHhhccC-CChHHHHHHHhhccccccccccHHHH
Q 012204 236 SLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGG-NVSAHTGHLVASAL-SDPYLSFAAALNGLAGPLHGLANQEV 311 (468)
Q Consensus 236 ~l~~~~nf~~ml~~--~~~~~~~~l~~~LvL~ADHeg~-n~St~aarvvaSt~-sd~y~avaAgl~aL~GplHGGA~e~v 311 (468)
+.+|.+||++|+.+ |++.+.++|+.+|++++||| + |||||++|+++||+ +|+|+|++||++++ ||+||||++.+
T Consensus 10 ~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg-~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga~e~~ 87 (227)
T cd06100 10 KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHG-PATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGAGEGA 87 (227)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccChHHHH
Confidence 56899999999966 88899999999999999999 6 99999999999999 99999999999999 99999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhH
Q 012204 312 LLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPIL 391 (468)
Q Consensus 312 ~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~ 391 (468)
++||.++.+..++ ..+++++||++.+++|++||||||++||..|||+++|+++++++...+|+++++.++++++.+.
T Consensus 88 ~~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (227)
T cd06100 88 ARLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALAVEKALTAA- 164 (227)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-
Confidence 9999998653222 4579999999999999999999999999999999999999999988889999999999987541
Q ss_pred HhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCcccCCc
Q 012204 392 TKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKS 454 (468)
Q Consensus 392 ~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pi~RP~s 454 (468)
+.|+++||||+|+|+++++||||+ ++++++|++||++||+||++||+.+| ...||..
T Consensus 165 ----~~~~l~~Nvd~~~a~~~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~-~~~~~~~ 221 (227)
T cd06100 165 ----KGKPLPLNVDGAIAAILLDLGFPP-GALRGLFVLGRSPGLIAHALEEKRLG-QPLYRHP 221 (227)
T ss_pred ----cCCCCcccHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCc
Confidence 346899999999999999999996 89999999999999999999999998 4556643
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=5.4e-50 Score=432.02 Aligned_cols=268 Identities=21% Similarity=0.252 Sum_probs=221.8
Q ss_pred hhCHHHHHHHHHHHHhhCCccccceehhccc---------cccccccceeeecceecCCCCeeecCCCHHHHhh-hCCCC
Q 012204 43 EMIPEQQERLKKVKSELGKAQLGNITVDMVI---------GGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQK-LLPAA 112 (468)
Q Consensus 43 ~~ip~~~~~~~~~~~~~g~~~~g~~t~~~~~---------~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eL~~-~~p~~ 112 (468)
|....-++.+++|+++---+.+-+...-++. |=.|-=+...|.||..++++ |+||||+|.||.+ ++
T Consensus 305 El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~-~~~rG~~i~dlig~~~--- 380 (608)
T PLN02522 305 ALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEE-PCYAGVPMSSIIEKDY--- 380 (608)
T ss_pred HHHHHHHHHHHHHHhCCceeecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCe-eEECCccHHHHhccCC---
Confidence 3444455567777764111222223322222 23344466778888888766 9999999999998 44
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhc
Q 012204 113 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 192 (468)
Q Consensus 113 ~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~s~f~~~y~~~ 192 (468)
.|.+++||||+|+.|++.
T Consensus 381 ------~f~~~~~ll~~g~~p~~~-------------------------------------------------------- 398 (608)
T PLN02522 381 ------GVGDVISLLWFKRSLPRY-------------------------------------------------------- 398 (608)
T ss_pred ------CHHHHHHHHHcCCCCCHH--------------------------------------------------------
Confidence 489999999999977522
Q ss_pred cCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhCCCChHHHHHHHHHHHHhcCCCCCC
Q 012204 193 IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 272 (468)
Q Consensus 193 ~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~LvL~ADHeg~n 272 (468)
..++||++|||+|||| +|
T Consensus 399 -------------------------------------------------------------~~~~ld~~Lvl~ADHG-~~ 416 (608)
T PLN02522 399 -------------------------------------------------------------CTKFIEMCIMLCADHG-PC 416 (608)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhccCC-CC
Confidence 2257899999999998 99
Q ss_pred Cch-hHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCC
Q 012204 273 VSA-HTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHG 351 (468)
Q Consensus 273 ~St-~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~ 351 (468)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+ +.+++++||++.+++|++|||||||
T Consensus 417 aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~------~~~~~~~~V~~~~~~~~~IpGFGHr 489 (608)
T PLN02522 417 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLTPYEFVEGMKKKGIRVPGIGHR 489 (608)
T ss_pred ccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc------cccCHHHHHHHHHhCCCccccCCCC
Confidence 998 599999999999999999999998 99999999999999998742 2347899999999999999999999
Q ss_pred CC--CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccch-----
Q 012204 352 VL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYT----- 424 (468)
Q Consensus 352 vy--r~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t----- 424 (468)
+| +..|||+++|+++++++++..+++++++++|+++.+ +.|+++||||||+|+++.+||+|. ++||
T Consensus 490 vy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~------~~k~L~~NVDga~a~i~~~lg~p~-~~ft~~e~~ 562 (608)
T PLN02522 490 IKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGS-GMFTKQEID 562 (608)
T ss_pred CCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh------ccCCCCcCcHhHHHHHHHHcCCCc-ccCcccccc
Confidence 99 567999999999999998889999999999998643 348999999999999999999995 8888
Q ss_pred ---------hhhhhhhhhhHHHHHHHHHHcCCCcccC
Q 012204 425 ---------VLFGVSRSLGICSQLIWDRALGLPLERP 452 (468)
Q Consensus 425 ---------~lF~vsR~~GwlAH~ieq~~~~~pi~RP 452 (468)
++|++||++||+||++||+...+|+||=
T Consensus 563 ~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~ 599 (608)
T PLN02522 563 EIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
T ss_pred ccccccccceEEEeehHHHHHHHHHHHHHhhCCcccC
Confidence 8999999999999999999998888873
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.65 E-value=1e-16 Score=166.22 Aligned_cols=185 Identities=23% Similarity=0.227 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc-hhHHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhh
Q 012204 252 PKMLELMRLYVTIHSDHEGGNVS-AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 330 (468)
Q Consensus 252 ~~~~~~l~~~LvL~ADHeg~n~S-t~aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~ 330 (468)
+....+++.++.+.+||+ ..+| ++-+-+.+.++.|+++++++||.. .|++.|||-..+.|.+.+.-+ +.-.
T Consensus 389 ~Ya~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd------~GL~ 460 (600)
T KOG1254|consen 389 QYARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYD------KGLA 460 (600)
T ss_pred HHHHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhh------ccCc
Confidence 345689999999999998 7887 777888889999999999999999 699999988888877744322 1236
Q ss_pred HHHHHHHHHhCCCcccCcCCCCCC--CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHH
Q 012204 331 LKDYVWKTLNSGKVVPGFGHGVLR--KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHS 408 (468)
Q Consensus 331 ~~~~v~~~l~~g~~IpGfGH~vyr--~~DPRa~~L~~~a~~~~~~d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~s 408 (468)
+.+++.+.+..+..|||-||++-. +.|-|..+++++++++++..|+++.|.++|++... |..|+-.|||+..
T Consensus 461 ~m~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~i 534 (600)
T KOG1254|consen 461 PMRFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGAI 534 (600)
T ss_pred hHHHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccchh
Confidence 789999999999999999999874 46889999999999999999999999999988743 5679999999999
Q ss_pred HHHHhccCCCccccc--------------hhhhhhhhhhhHHHHHHHHHHcCCCccc
Q 012204 409 GVLLNHFGLAEARYY--------------TVLFGVSRSLGICSQLIWDRALGLPLER 451 (468)
Q Consensus 409 g~l~~~lGlp~~~~~--------------t~lF~vsR~~GwlAH~ieq~~~~~pi~R 451 (468)
|++|-+|=-.. .+| ..+|+++|++|++.|.+.|.++..+++|
T Consensus 535 ~~~fvd~l~~~-g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyr 590 (600)
T KOG1254|consen 535 AVLFVDLLRNS-GMFTKEEADEYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYR 590 (600)
T ss_pred HHHHHHHHhcc-CCccHHHhhhheecccccceEEeeeecchhhhhccHhhhhCcccc
Confidence 99998763321 333 4899999999999999999999888887
No 41
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=97.77 E-value=0.0028 Score=62.03 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=54.5
Q ss_pred CCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--C-cHHHH--HHHH-cCCCCCChHHHH
Q 012204 99 GLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V-PDYVY--KAID-ALPVTAHPMTQF 172 (468)
Q Consensus 99 Gy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~--l-p~~v~--~~i~-~lP~~~hPM~~l 172 (468)
||+|.||+++. +|+|++|||++|++|+++|++.|...|..... + ...+. .+.. +.| .+|-..+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~--~~~~~~v 69 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGP--EDLQSAV 69 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCC--ccHHHHH
Confidence 89999999876 49999999999999999999999998865542 3 23322 2332 233 6778888
Q ss_pred HHHHHHhcc
Q 012204 173 ASGVMALQV 181 (468)
Q Consensus 173 ~~avsaL~~ 181 (468)
++++++++.
T Consensus 70 aag~~a~G~ 78 (227)
T cd06100 70 AAGLLGIGD 78 (227)
T ss_pred HHHHhccCC
Confidence 888888853
No 42
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=94.63 E-value=0.019 Score=60.08 Aligned_cols=200 Identities=18% Similarity=0.155 Sum_probs=123.9
Q ss_pred hhHHHHHHhhCHHHHHHHHHHHHhhCCcccc------ceehhcccccccc------------ccceeeecceecCCCCee
Q 012204 35 LDLHSQLKEMIPEQQERLKKVKSELGKAQLG------NITVDMVIGGMRG------------MTGLLWETSLLDPDEGIR 96 (468)
Q Consensus 35 ~~l~~~~~~~ip~~~~~~~~~~~~~g~~~~g------~~t~~~~~~Glrg------------~~~~~t~iS~iD~~~Gi~ 96 (468)
.|--+.+++.+--.+..|.++.+- .++ ..+|+.-.++|+| +.++.-.++-++.++.|+
T Consensus 224 ~dys~Nf~~mlg~~~~~f~~lmrl----y~~iHadHE~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~ 299 (458)
T KOG2617|consen 224 LDYSANFARMLGSRQPDFAQLMRL----YVGIHADHEGGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLR 299 (458)
T ss_pred cchhHhHHHHHccCChHHHHHHHH----eeeeecccccCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHH
Confidence 344444455444455555555432 233 5677888899999 888888999999999999
Q ss_pred ecCCCHHHHhhhCCCCCCCCCCCHHHHHH-HHHhCC----------CCCHHHHHHHHHHHHhhCCCcHH-HHHHHHcCCC
Q 012204 97 FRGLSIPECQKLLPAAKPDGEPLPEGLLW-LLLTGK----------VPSKEQVDGLSKELRDRATVPDY-VYKAIDALPV 164 (468)
Q Consensus 97 yRGy~I~eL~~~~p~~~~~~~~~~Eev~~-LLl~G~----------lPt~~ql~~f~~~L~~~~~lp~~-v~~~i~~lP~ 164 (468)
|++.-++||.+..+++.- .|-+| .|..|. -+|..+....++.+.++ +|++ ..++.. +-
T Consensus 300 ~L~~~~~Eig~~~s~e~i------keyiw~~ln~~rvvpGyGHavlr~tDPR~~~~~efA~k~--~~~d~l~~l~~--~l 369 (458)
T KOG2617|consen 300 FLGKLIEEIGKDLSKENI------KEYIWKTLNSGRVVPGYGHAVLRKTDPRYKVQREFALKH--LPDDPLFLLVS--AL 369 (458)
T ss_pred HHHHhHHHhccccchhhh------hHhhHHhhcccccccccccccccCCCchhhHHHHHHHhc--CCCCcchhhhH--HH
Confidence 999999999987664322 23344 333333 25666665555554444 4432 233322 22
Q ss_pred CCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc-CCCCCCCHHHHH
Q 012204 165 TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII-PKDDSLDYGGNF 243 (468)
Q Consensus 165 ~~hPM~~l~~avsaL~~~s~f~~~y~~~~~k~~~~e~~~e~al~liA~~p~iaa~iyr~~~~~~~~~-~p~~~l~~~~nf 243 (468)
.-++|.++....-..+.+..+...+--.+.-.-+||..+.+.+-.+++++-+++-+++.+.-+..+. +-+-..+|..+|
T Consensus 370 ~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa~Gvlsqliw~ralg~pieRPks~~t~~~~~~ 449 (458)
T KOG2617|consen 370 YKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRALGVLSQLIWDRALGLPIERPKSVSTDWLHRF 449 (458)
T ss_pred HHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhCCcccCccccchHHHHHH
Confidence 3466677776666666655553222111344457899999999999999999988666544333333 345577788888
Q ss_pred HhhhC
Q 012204 244 SHMLG 248 (468)
Q Consensus 244 ~~ml~ 248 (468)
..+.+
T Consensus 450 ~~~~~ 454 (458)
T KOG2617|consen 450 TNMVR 454 (458)
T ss_pred HHHhh
Confidence 77653
No 43
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=78.62 E-value=8 Score=37.56 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 120 PEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 120 ~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
|-+.+|++++|+.|+++|.+.|..-|.-.. .++.. +..+..+ ..++|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aS--t~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGS--TGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhc--cCCCHHHHHHHHHHHcC
Confidence 558899999999999999999998876554 24543 3334444 44678888888898883
No 44
>PRK14037 citrate synthase; Provisional
Probab=67.49 E-value=18 Score=38.32 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.+|++++|+.|++++.+.|..-|--+. .++..+....-.-...++|-..+++|+.+|.
T Consensus 151 s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 151 SFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 5779999999999999999999998876554 3666655533323345688888999999884
No 45
>PRK14035 citrate synthase; Provisional
Probab=60.23 E-value=23 Score=37.39 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 118 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 118 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
-+|-+.+|++++|+.|+++|.+.|..-|.-+. .+ +.....++.+ ..++|...+++|+.+|..
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~G 215 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLKG 215 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhccC
Confidence 35789999999999999999999998876554 23 3334444444 345788889888888743
No 46
>PRK12349 citrate synthase 3; Provisional
Probab=58.55 E-value=33 Score=36.25 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHHHH--HHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVY--KAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
.|-+.+|++++|+.|++++.+.|..-|.-.. .++..+. .++.+ .-++|-..+++|+++|.
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aS--t~ad~~~av~agl~al~ 217 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIAS--TQSDLYGALTGAVASLK 217 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHc--cCccHHHHHHHHHHhcc
Confidence 4779999999999999999999998875554 3555433 45554 34578888888888884
No 47
>PRK14034 citrate synthase; Provisional
Probab=58.17 E-value=26 Score=37.03 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
+|-+.+|++++|+.|+++|.+.|..-|.-+. .+ +..+..++.+ ..++|-..+++|+.+|..
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aS--t~~d~ysav~agi~al~G 215 (372)
T PRK14034 151 SLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVA--TLSDVYSGITAAIGALKG 215 (372)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhc--cCCcHHHHHHHHhcccCC
Confidence 5789999999999999999999998876554 23 3344444444 445788888888888754
No 48
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=57.14 E-value=20 Score=37.82 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCc--HHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVP--DYVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
+|-+.+|++++|+.|++++.+.|..-|.-+. .+. .....++.+ ..++|...+.+|+.+|..
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~G 216 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLSG 216 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhccC
Confidence 5779999999999999999999998876554 233 344445544 336788888888888743
No 49
>PRK14036 citrate synthase; Provisional
Probab=56.06 E-value=32 Score=36.47 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
+|-+.+|++++|+.|++.+.+.|..-|--+. .+.. ....++.+ .-++|-..+++|+.+|..
T Consensus 153 ~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aS--t~ad~ys~v~agi~aL~G 217 (377)
T PRK14036 153 DYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTAS--TLTDPYAVIASAVGTLAG 217 (377)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHHccC
Confidence 5779999999999999999999998875554 2333 33334433 345788888888888753
No 50
>PRK12351 methylcitrate synthase; Provisional
Probab=47.35 E-value=65 Score=34.21 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
++-+.+|++++|+.|++++.+.|..-|--+. .+ +.....+..+- -++|-..+++|+.+|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaSt--~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAGT--GSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhcc--CCCHHHHHHHHHHhcc
Confidence 4678999999999999999999999886554 23 33444555553 3578888888888884
No 51
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=45.73 E-value=66 Score=33.88 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
.|-+.+|++++|+.|++++.+.|..-|--+. .+ +..+..++.+-. ++|-..+++++++|..
T Consensus 148 s~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt~--ad~~~av~agl~aL~G 212 (362)
T cd06111 148 GIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITSTL--SDIYSAITGAIGALKG 212 (362)
T ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHccC--CCHHHHHHHHHhhccC
Confidence 5779999999999999999999998764443 23 334445665543 5777888888888743
No 52
>PRK14033 citrate synthase; Provisional
Probab=45.68 E-value=68 Score=33.95 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
.|-+.+|++++|+.|++.+.+.|..-|--.. .+ +.....++.+- .++|-..+++|+++|.
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aSt--~adl~~av~agl~al~ 221 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITST--LSDIYSAVTGAIGALK 221 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcc--CCCHHHHHHHHHhhcc
Confidence 4779999999999999999999998875443 23 33444555553 3578888888888884
No 53
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=43.09 E-value=74 Score=33.58 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.+|.+++|+.|++++.+.|..-|.-+. .+ ......++.+ .-++|-..+++|+.+|.
T Consensus 146 s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 146 SIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999998876553 23 3344455554 44678888888888884
No 54
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=43.00 E-value=73 Score=34.15 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhC-CCCCHHHHHHHHHHHHhhC--C-Cc--HHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTG-KVPSKEQVDGLSKELRDRA--T-VP--DYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G-~lPt~~ql~~f~~~L~~~~--~-lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.+|++++| +.|+++|.+.|..-|.-+. . ++ .....+..+-. ++|-..+++|+.+|.
T Consensus 175 s~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~--ad~~~avaagi~al~ 240 (406)
T cd06113 175 STAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSG--TDTYSAIAAAIGSLK 240 (406)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccC--CCHHHHHHHHHHHcc
Confidence 577999999999 5999999999998875432 2 33 34555666544 688899999999984
No 55
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=40.38 E-value=96 Score=32.77 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCc--HHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVP--DYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
++-+.||.+++|+.|++++.+.|..-|.-+. .+. .....+..+- -++|-..+++|+++|.
T Consensus 149 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aSt--~ad~~sav~agi~aL~ 212 (366)
T cd06117 149 SIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAGT--GSDMYSAITGAIGALR 212 (366)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHcc--CCcHHHHHHHHHHhcc
Confidence 4678899999999999999999999876554 233 3444555553 3578888888888884
No 56
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=39.73 E-value=1e+02 Score=32.50 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CC--cHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 117 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TV--PDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 117 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+..|.+.+|++++|+.|++++.+.|..-|.-+. .+ +..+..++.+- .++|-..+++++.+|.
T Consensus 146 ~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aSt--~adl~~av~agl~al~ 211 (368)
T TIGR01800 146 DDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAST--LSDMYSAITAAIGALK 211 (368)
T ss_pred CccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhcc--CCCHHHHHHHHHhhcC
Confidence 346888999999999999999999998875553 23 33455566654 3678888888888884
No 57
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=39.01 E-value=37 Score=33.04 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcC
Q 012204 122 GLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDAL 162 (468)
Q Consensus 122 ev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~l 162 (468)
==++|=|+|.+||.+|+++|.+. .=|+.-.++|+.|
T Consensus 29 RRv~LDL~G~~PT~eEv~~Fl~d-----~~~~kr~~lVd~L 64 (208)
T PF07583_consen 29 RRVYLDLTGLPPTPEEVRAFLAD-----PSPDKREKLVDRL 64 (208)
T ss_pred HHHHHHHhCCCcCHHHHHHHHhC-----CChhHHHHHHHHH
Confidence 34689999999999999999874 2244444555543
No 58
>PRK14032 citrate synthase; Provisional
Probab=37.62 E-value=1e+02 Score=33.46 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhC--C-CcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDRA--T-VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~~--~-lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.||.+++|+ .|++.|.+.|..-|--+. . ++. ....++.+- -++|-..+++|+.+|.
T Consensus 205 s~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt--~ad~ysavaagi~aL~ 270 (447)
T PRK14032 205 STAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 270 (447)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHcc--CCcHHHHHHHHHHhcc
Confidence 4778999999999 999999999998875443 2 343 344555554 4688899999999984
No 59
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=36.86 E-value=1.2e+02 Score=31.90 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA----TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~----~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.+|++++|+.|++++.+.|..-|.-+. ..+..+..++.+-. ++|-..+++++++|.
T Consensus 148 ~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 148 SHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 5678898999999999999999998876554 23344556777755 578788888888884
No 60
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=36.71 E-value=1.1e+02 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
+|-+.+|.+++|+.|++++.+.|..-|.-+. .++. .+..++.+-. ++|-..+++|+++|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt~--ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVASTL--SDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHccC--CCHHHHHHHHHHHcc
Confidence 4678899999999999999999998876554 3444 4555666644 688899999999884
No 61
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=35.44 E-value=27 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.4
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 012204 95 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 126 (468)
Q Consensus 95 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 126 (468)
..|||++++||.+. ..||++=|
T Consensus 15 f~yRG~~l~~L~~m----------~~~e~~~L 36 (143)
T PTZ00096 15 FTYRGVELEKLLAL----------PEEELVEL 36 (143)
T ss_pred eeeecCCHHHHHcC----------CHHHHHHH
Confidence 47999999999986 26776655
No 62
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=35.41 E-value=56 Score=26.87 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=34.4
Q ss_pred eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012204 96 RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 96 ~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 151 (468)
+|+....+.|.-- .|-|-||+-.|+..|.+|.-.+-+.|...+-+
T Consensus 19 r~~~~~y~~cF~G-----------selVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i 63 (81)
T cd04448 19 RYRLRTYTNCILG-----------KELVNWLIRQGKAATRVQAIAIGQALLDAGWI 63 (81)
T ss_pred EECCEEcCcccCh-----------HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCE
Confidence 4555555555432 47889999999999999999999998877654
No 63
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=34.24 E-value=1.2e+02 Score=31.80 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012204 119 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA----TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 180 (468)
Q Consensus 119 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~----~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~ 180 (468)
++-+.+|.+++|+.|++++.+.|..-|.-+. ..+.....++.+- -++|-..+++|+.+|.
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aSt--~ad~~savaagi~al~ 200 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAST--EADLTSAVLGAIGALK 200 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhcc--CCcHHHHHHHHHHhcc
Confidence 5778899999999999999999998886443 2334455566554 3688888999999884
No 64
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=33.55 E-value=1.7e+02 Score=29.32 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=53.6
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHH
Q 012204 100 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASG 175 (468)
Q Consensus 100 y~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~a 175 (468)
.+.+|.+-.+= .|.-|++-+.++.+++|+-|+++|.+.|..-|--+. .+.. .+..+..+ ..++|-..++++
T Consensus 37 ~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aS--t~ad~~~av~ag 111 (265)
T cd06101 37 SSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGS--TLSDPYSAIAAA 111 (265)
T ss_pred CCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHc--cCCcHHHHHHHH
Confidence 66777765442 245567888999999999999999999998875543 2333 34444544 346788888888
Q ss_pred HHHhc
Q 012204 176 VMALQ 180 (468)
Q Consensus 176 vsaL~ 180 (468)
+++|.
T Consensus 112 l~al~ 116 (265)
T cd06101 112 IAALK 116 (265)
T ss_pred HHhCC
Confidence 88884
No 65
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=31.76 E-value=35 Score=31.02 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=12.7
Q ss_pred eeecCCCHHHHhhh
Q 012204 95 IRFRGLSIPECQKL 108 (468)
Q Consensus 95 i~yRGy~I~eL~~~ 108 (468)
..|||++++||.+.
T Consensus 7 f~yrG~~l~~L~~m 20 (134)
T PRK04038 7 FTYRGYTLEELQEM 20 (134)
T ss_pred eeecccCHHHHHcC
Confidence 47999999999986
No 66
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=29.87 E-value=2.5e+02 Score=24.65 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=19.5
Q ss_pred ecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 012204 97 FRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKEL 145 (468)
Q Consensus 97 yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~-lPt~~ql~~f~~~L 145 (468)
-||++.+||++.+- .-.+.++-+..|+ -|+.+-+..+.+.|
T Consensus 16 ~~Glsq~eLA~~~G--------is~~~is~iE~g~~~ps~~~l~kIa~aL 57 (120)
T PRK13890 16 ERHMTKKELSERSG--------VSISFLSDLTTGKANPSLKVMEAIADAL 57 (120)
T ss_pred HcCCCHHHHHHHHC--------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45666666666531 1123344444444 35555555544443
No 67
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=29.52 E-value=7.3e+02 Score=26.60 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=48.8
Q ss_pred HHHHhhccCCChHHHHHHHhhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccCcCCCCCCCC
Q 012204 277 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 356 (468)
Q Consensus 277 aarvvaSt~sd~y~avaAgl~aL~GplHGGA~e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~vyr~~ 356 (468)
|+|+++-.+ |+-++-..|.-|..--+|--+-....+-+.++ +++..-..+.++++++-..|| |-.+-..
T Consensus 231 TarlA~~~g-Dp~la~icg~IAaDE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MPa--~~m~dg~ 299 (390)
T PLN00179 231 TARLAKEHG-DAKLAKICGTIAADEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMPA--HLMYDGR 299 (390)
T ss_pred HHHHHHhcC-ChHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCCc--ccCCCCC
Confidence 455555544 66544444444446667755544444444333 456666777788888888885 7777777
Q ss_pred Ccc-HHHHHHHHHhh
Q 012204 357 DPR-YTCQREFALKH 370 (468)
Q Consensus 357 DPR-a~~L~~~a~~~ 370 (468)
||. ++..-..+.+.
T Consensus 300 d~~lF~~fsavaqr~ 314 (390)
T PLN00179 300 DDNLFDHFSAVAQRL 314 (390)
T ss_pred cchHHHHHHHHHHHh
Confidence 875 44444444443
No 68
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=29.51 E-value=1.5e+02 Score=28.60 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=52.4
Q ss_pred CCCCCCCccHHHHHHHHHhhCCC-ChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhh
Q 012204 351 GVLRKTDPRYTCQREFALKHLPD-DPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGV 429 (468)
Q Consensus 351 ~vyr~~DPRa~~L~~~a~~~~~~-d~~~~la~~ie~~~~~~~~e~~k~k~l~pNvD~~sg~l~~~lGlp~~~~~t~lF~v 429 (468)
++ |++|||+.-+++++.++-.. +.+.++..++.+-...+...| .=.|.+|..++..+..+..+|=.+
T Consensus 8 ~~-~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~-----------~e~g~~f~~ls~~E~~l~~~le~~ 75 (201)
T cd07622 8 RL-RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIH-----------ANYGRVFSEWSAIEKEMGDGLQKA 75 (201)
T ss_pred cC-CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcchhHHHHHHHH
Confidence 44 46899999999999876321 223444444433332222111 335667777777777777888888
Q ss_pred hhhhhHHHHHHHHHHc
Q 012204 430 SRSLGICSQLIWDRAL 445 (468)
Q Consensus 430 sR~~GwlAH~ieq~~~ 445 (468)
|+.++-++-.+++...
T Consensus 76 g~~~d~~~~~~~~~~~ 91 (201)
T cd07622 76 GHYMDSYAASIDNGLE 91 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777777776554
No 69
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=29.45 E-value=40 Score=30.74 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.6
Q ss_pred eeecCCCHHHHhhh
Q 012204 95 IRFRGLSIPECQKL 108 (468)
Q Consensus 95 i~yRGy~I~eL~~~ 108 (468)
..|||++++||.+.
T Consensus 5 f~yrG~~l~~L~~m 18 (135)
T TIGR01025 5 FRYRGYTLEELQDM 18 (135)
T ss_pred EeecccCHHHHHcC
Confidence 47999999999986
No 70
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=28.77 E-value=2e+02 Score=30.04 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=42.7
Q ss_pred CHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 119 LPEGLLWLLL--TGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 119 ~~Eev~~LLl--~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
.+-|.++.+| +|+-|++++.+.|..-|.-+. .+.. .+..+..+ ..++|-..+.+|+++|..
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aS--t~~~~~~av~agl~al~G 214 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAAS--TGADLYSAVAAGLAALSG 214 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT--TT--HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhc--cCcchhHHHHhhhhhccC
Confidence 4667788888 999999999999999986654 3433 35555554 457889999999999853
No 71
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=26.85 E-value=1.2e+02 Score=29.93 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCC
Q 012204 100 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 163 (468)
Q Consensus 100 y~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP 163 (468)
||-+||.+.+- .+|.++|==.+|+ +|+.++.++|-++|..+..+.+.+.+-+.-+|
T Consensus 24 ~ty~el~~~~g--------~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSITG--------LPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHHC--------CCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 58889987652 6899999888998 69999999999999887666555554444344
No 72
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=25.55 E-value=49 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.7
Q ss_pred chhhhhhhhhhhHHHHHHHHHHc
Q 012204 423 YTVLFGVSRSLGICSQLIWDRAL 445 (468)
Q Consensus 423 ~t~lF~vsR~~GwlAH~ieq~~~ 445 (468)
|.++-.++-..||.+|..|+|..
T Consensus 57 FA~iALlanalgW~sHRQW~Rs~ 79 (139)
T PRK13755 57 FAAIALLANALGWFSHRQWLRSA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555678899999999999975
No 73
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=24.05 E-value=1e+02 Score=26.21 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHhh-CCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012204 131 KVPSKEQVDGLSKELRDR-ATVPDYVYKAIDALPVTAHPMTQFASGVMALQV 181 (468)
Q Consensus 131 ~lPt~~ql~~f~~~L~~~-~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 181 (468)
.+-|.+|++++..+|..+ +.+|+.|..++.- ..++.....++-
T Consensus 28 ~~~~~~el~~l~~El~DRFG~~P~ev~~L~~~--------~~lk~~a~~~gi 71 (101)
T PF03461_consen 28 SAESEEELEDLREELIDRFGPLPEEVENLLEL--------ARLKILARKLGI 71 (101)
T ss_dssp C--SHHHHHHHHHHHHHHH-S--HHHHHHHHH--------HHHHHHHHHCTE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHH--------HHHHHHHHHCCC
Confidence 346789999999999877 6899999998863 455555555543
No 74
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.52 E-value=1.2e+02 Score=24.83 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHhhCCC
Q 012204 120 PEGLLWLLLTGK-VPSKEQVDGLSKELRDRATV 151 (468)
Q Consensus 120 ~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~~~l 151 (468)
.|-|-||+-+++ +.|.+|.-++-++|-..+-+
T Consensus 33 ~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I 65 (83)
T cd04449 33 SEAVSWLINNFEDVDTREEAVELGQELMNEGLI 65 (83)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCE
Confidence 588999999876 89999998888888777653
No 75
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.84 E-value=98 Score=26.95 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=16.7
Q ss_pred HhCCCCCHHHHHHHHHHHHh
Q 012204 128 LTGKVPSKEQVDGLSKELRD 147 (468)
Q Consensus 128 l~G~lPt~~ql~~f~~~L~~ 147 (468)
+.|.|||.+|++.|-+...+
T Consensus 68 ~~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 68 IVGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred ecCCCCChHHHHHHHHHHHH
Confidence 35999999999999988654
Done!