BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012205
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 230/475 (48%), Gaps = 53/475 (11%)
Query: 22 AASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGP 81
A ++ LPG F +GY+ SG L Y+FV+S+K+P P++LWL GGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 82 GCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL 141
GCS+ GL E GP +V+ +G TL NPYSW A++L+++SP G G+SY+
Sbjct: 59 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 142 ASQAGDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIK 201
+ D + Q + L+ + PE +N +++ G+SY+G+ +P L + +
Sbjct: 114 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 166
Query: 202 PLINLQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGCGGE-YVNV-DPKNE 259
P +NLQG +GN + +NS + FA+ GL+ N L+ SL+ C + N D K+
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 260 VCLNDIQAFSKLTSEIEGAHILEPRCPFXXXXXXXXXXXXXXLNVNE------------- 306
C+ ++Q +++ G +I P + V +
Sbjct: 227 ECVTNLQEVARIVGN-SGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRM 285
Query: 307 ------QSQEFLVPEPPLPTIGCRTYGYLLSYYWNNDYNVRKALRIRLGSKGEWQRCNF- 359
+S + + +PP S Y NN Y VRKAL I +W CNF
Sbjct: 286 WHQALLRSGDKVRMDPPCTNTTAA------STYLNNPY-VRKALNIP-EQLPQWDMCNFL 337
Query: 360 -GLPYAREIHSSFSYHVS-LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRP 417
L Y R S S ++ LS++ Y+ L+Y+GD DM F+G E ++ SLN + RP
Sbjct: 338 VNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRP 397
Query: 418 WILH-----SQVAGYTRTYSNRMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 467
W++ Q+AG+ + +S+ + + T+KG GH P +P + MF R++N P
Sbjct: 398 WLVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 16/253 (6%)
Query: 22 AASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGP 81
A ++ LPG F +GY+ SG L Y+FV+S+K+P P++LWL GGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 82 GCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL 141
GCS+ GL E GP +V+ +G TL NPYSW A++L+++SP G G+SY+
Sbjct: 61 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 142 ASQAGDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIK 201
+ D + Q + L+ + PE +N +++ G+SY+G+ +P L + +
Sbjct: 116 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 168
Query: 202 PLINLQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGCGGE-YVNV-DPKNE 259
P +NLQG +GN + +NS + FA+ GL+ N L+ SL+ C + N D K+
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 260 VCLNDIQAFSKLT 272
C+ ++Q +++
Sbjct: 229 ECVTNLQEVARIV 241
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/448 (26%), Positives = 189/448 (42%), Gaps = 76/448 (16%)
Query: 44 TGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEY 103
TGY+ V E D F++ +S +P +DP++LWL GGPGCS+ +GL +E+GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIG---- 72
Query: 104 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFLRKW 161
P L NPYSW A+++F+D PV G+SY+ + S + V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 162 LLDHPELLSN--PVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEPT 219
PE ++ +I G+SY+G +P +I + + + NL ++GN T+P
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNF----NLTSVLIGNGLTDPL 182
Query: 220 VEENSKIPFAHGMGLISNELYESLKMGCGGEYVNVDPKNEVCLNDIQAFSKLTSEIEGAH 279
+ N YE + G GGE +V P E S + +E
Sbjct: 183 TQYN---------------YYEPMACGEGGE-PSVLPSEEC--------SAMEDSLERCL 218
Query: 280 ILEPRCPFXXXXXXXXXXXXXXLNVNEQSQEFLVPEPPLPTIGCRTYGYLLSY------- 332
L C + N N Q + + I G L Y
Sbjct: 219 GLIESC-YDSQSVWSCVPATIYCN-NAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDID 276
Query: 333 -YWNNDYNVRKALRIRLGSKGEWQRCNFGL--------PYAREIHSSFSYHVSLSTKGYR 383
Y N DY V++A+ + ++ CNF + + + H++ + L +
Sbjct: 277 DYLNQDY-VKEAVGAEVD---HYESCNFDINRNFLFAGDWMKPYHTAVT---DLLNQDLP 329
Query: 384 SLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDW-----RPWI--LHSQVAGYTRTYSNRMT 436
L+Y+GD D + +LG +AW L + +++ R W + +VAG ++Y T
Sbjct: 330 ILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFT 388
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWIN 464
Y V GGH P P +M WI+
Sbjct: 389 YLRVFNGGHMVPFDVPENALSMVNEWIH 416
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 65 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 175
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 70 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 66 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 176
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 70 YGASEELGAFR---VKPAGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 187/448 (41%), Gaps = 76/448 (16%)
Query: 44 TGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEY 103
TGY+ V E D F++ +S +P +DP++LWL GGPGCS+ +GL + +GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIG---- 72
Query: 104 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFLRKW 161
P L NPYSW A+++F+D PV G+SY+ + S + V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 162 LLDHPELLSN--PVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEPT 219
PE ++ +I G SY+G +P +I + + + NL ++GN T+P
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNF----NLTSVLIGNGLTDPL 182
Query: 220 VEENSKIPFAHGMGLISNELYESLKMGCGGEYVNVDPKNEVCLNDIQAFSKLTSEIEGAH 279
+ N YE + G GGE +V P E S + +E
Sbjct: 183 TQYN---------------YYEPMACGEGGE-PSVLPSEEC--------SAMEDSLERCL 218
Query: 280 ILEPRCPFXXXXXXXXXXXXXXLNVNEQSQEFLVPEPPLPTIGCRTYGYLLSY------- 332
L C + N N Q + + I G L Y
Sbjct: 219 GLIESC-YDSQSVWSCVPATIYCN-NAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDID 276
Query: 333 -YWNNDYNVRKALRIRLGSKGEWQRCNFGL--------PYAREIHSSFSYHVSLSTKGYR 383
Y N DY V++A+ + ++ CNF + + + H++ + L +
Sbjct: 277 DYLNQDY-VKEAVGAEVD---HYESCNFDINRNFLFAGDWMKPYHTAVT---DLLNQDLP 329
Query: 384 SLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDW-----RPWI--LHSQVAGYTRTYSNRMT 436
L+Y+GD D + +LG +AW L + +++ R W + +VAG ++Y T
Sbjct: 330 ILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFT 388
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWIN 464
Y V GGH P P +M WI+
Sbjct: 389 YLRVFNGGHMVPFDVPENALSMVNEWIH 416
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 31 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDP-LLLWLTGGPGCSAFS-G 88
LPG + F + GYV + ++ L+Y+F +++ L+LWL GGPGCS+ G
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLG 72
Query: 89 LAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDF 148
E+G V NG +L LN Y+W K A+ILF +SP G G+SY+ T GD
Sbjct: 73 AMQELGAFR---VHTNGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 149 KQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQI-SNENEEDIKPLINLQ 207
K Q FL KW P YI G+ SG +P L Q + N N P IN Q
Sbjct: 128 KMAQDTYTFLVKWFERFPHYNYREFYIAGE--SGHFIPQLSQVVYRNRNN---SPFINFQ 182
Query: 208 GYILGNAATEPTVEENSKIPFAHGMGLISNELYES-LKMGCGGEYVNVDPK 257
G ++ + T + GLIS+E +S LK+ G +++ P+
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPE 233
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 51 ESGDAQLFYY-FVKSEKNPRED-PLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLP 108
+S D + F++ F ++ N D PL++WL GGPGCS+ G E GP N S
Sbjct: 45 DSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVN------SDG 98
Query: 109 TLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVD-------QFLRKW 161
L+LN SW + +LF+D P GTG+S + + K + ++ FL +
Sbjct: 99 KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENY 158
Query: 162 LLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENE--EDIKPLINLQGYILGNAATEPT 219
PE L+ + + G+SY+G +P I N N+ + +L+ ++GN +P
Sbjct: 159 FKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPN 218
Query: 220 VEENSKIPFAHGMGLI 235
+ S +PFA LI
Sbjct: 219 TQSLSYLPFAMEKKLI 234
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 11/145 (7%)
Query: 331 SYYWNNDYNVRKALRIRLGSKGEWQRCNF--GLPYAREIHSSFSYHVSL-STKGYRSLIY 387
S Y NN Y VRKAL I +W CNF L Y R S S ++ L S++ Y+ L+Y
Sbjct: 12 STYLNNPY-VRKALNIP-EQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLY 69
Query: 388 SGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNRMTYATVKG 442
+GD DM F+G E ++ SLN + RPW++ Q+AG+ + +S+ + + T+KG
Sbjct: 70 NGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKG 128
Query: 443 GGHTAPEYRPAECYAMFQRWINHDP 467
GH P +P + MF R++N P
Sbjct: 129 AGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 377 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWIL---HSQVAGYTRTYSN 433
L G R +YSGD D +VP T + +L + W PW + +V G++ Y
Sbjct: 62 LIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG 121
Query: 434 RMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 468
+TY TV+G GH P +RPA+ + +F++++ +P+
Sbjct: 122 -LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPM 155
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 377 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 436
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 468
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 377 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 436
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 62 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 120
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 468
+V+G GH P +RP + +FQ ++ P+
Sbjct: 121 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 377 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 436
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 468
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 377 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 436
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 437 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 468
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 357 CNFGLPYAR-EIHSSFSYHVSLSTKGYRSLIYSGDHDMMV 395
C++GLP R E HS+F V+LS G ++ S DH + +
Sbjct: 54 CSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRL 93
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSD|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 113 NPYSWTKEASILFVDSPV---GTGYSYAKTPLASQAGDFKQVQQVDQFLRKWLLDH-PEL 168
N W+K ++ PV GTGYS TP +Q Q+V + LR WL H +
Sbjct: 152 NVKDWSK---VVLAYEPVWAIGTGYSL--TP--------QQAQEVHEKLRGWLKSHVSDA 198
Query: 169 LSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEP 218
++ I Y G V ++++++++ D G+++G A+ +P
Sbjct: 199 VAQSTRI---IYGGSVTGGNCKELASQHDVD--------GFLVGGASLKP 237
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 215 ATEPTVEENSKIPFAHGMG-LISNELYESLKMGCGGEYVNVDPKNEVCLNDIQAFSKLTS 273
AT + EN + PF +G +I +E E K G+ V+ DPK +N+I +T
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 274 EIEGAHI 280
++ I
Sbjct: 64 PLDREAI 70
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 215 ATEPTVEENSKIPFAHGMG-LISNELYESLKMGCGGEYVNVDPKNEVCLNDIQAFSKLTS 273
AT + EN + PF +G +I +E E K G+ V+ DPK +N+I +T
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 274 EIE 276
++
Sbjct: 64 PLD 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,927,227
Number of Sequences: 62578
Number of extensions: 659140
Number of successful extensions: 1501
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 28
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)