BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012207
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 44/273 (16%)
Query: 202 QEIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLS 260
+EIR L + +T+ CL + K + + LVL C G DGLA++ +C++LK L+L
Sbjct: 108 EEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 261 KCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI 320
+ ++ V +L Y+ VS ++S CL + V+ S +
Sbjct: 165 E-SDVDDV-------SGHWLSHFPDTYTSLVSLNIS-CLAS------------EVSFSAL 203
Query: 321 KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC----CRKITYASINSIT 376
+ + +LK L L++ V E+L+ ++Q +L +L R Y+ ++
Sbjct: 204 ERLVTRCPNLKSLKLNR--AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 377 KTCTSLTSLRMECCKLVSWEA----FVLIGQQCQYLEELDITENEVNDEGL-KSISRCSK 431
C L C W+A + C L L+++ V L K + +C K
Sbjct: 262 SGCKELR------CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315
Query: 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLY 464
L +L + I D GL+ + STC L+EL ++
Sbjct: 316 LQ--RLWVLDYIEDAGLEVLASTCKDLRELRVF 346
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 43/248 (17%)
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
+ D G+E++A C+++R L + P E V+E + + GL SV
Sbjct: 325 IEDAGLEVLASTCKDLREL---------RVFPS-------EPFVMEPNVALTEQGLVSVS 368
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLI----------------KGADYLQQLILAYSFWVS 292
C L+++ L C+ +++ L ++ K DYL L F
Sbjct: 369 MGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--G 425
Query: 293 ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352
A + C + S D + IG + ++ LS++ +G +D + V+
Sbjct: 426 AIVEHCKDLRRLSLSGLLTD-----KVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSG 479
Query: 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412
LRKL+I C A + + +K T + SL M C VS+ A L+GQ+ L
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLET-MRSLWMSSCS-VSFGACKLLGQKMPKLNVEV 537
Query: 413 ITENEVND 420
I E D
Sbjct: 538 IDERGAPD 545
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 108/522 (20%), Positives = 198/522 (37%), Gaps = 115/522 (22%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR-HRKILKPLC-AETLSRTSARYPF 72
EE++ ++ + D R S SL C+++Y IE RK+ C A + + R+P
Sbjct: 9 FPEEVLEHVFSFIQLDK-DRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPK 67
Query: 73 ITQLDLSLCPRANDDAL--------------SIVSSSSWKLTLR---------------- 102
+ ++L P D L ++ SS +W +R
Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK 127
Query: 103 ------SINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDXXXXXXXXXKNLERLW 156
+ LS F+ GL+++ CR L E+DL ++ W
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD------------VDDVSGHW 175
Query: 157 LARCK----LITDLGIGRIAAXXXXXXXXXXXXXIRVTDLGVELVALKCQEIRTLDLSYL 212
L+ + L I +A+ V+ +E + +C +++L L+
Sbjct: 176 LSHFPDTYTSLVSLNISCLAS--------------EVSFSALERLVTRCPNLKSLKLNRA 221
Query: 213 PITEKCLPPVVKLQYLEDLVLEGCHG-IDDD---GLASVEYSCKSLKALNLSKCQNISHV 268
EK + + LE+L G + D GL+ CK L+ L S +
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPA 279
Query: 269 GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG 328
L ++ L L L+Y+ S DL K L P LQ + D + +G++ + +
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338
Query: 329 SLKELS--------LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380
L+EL + +T++ L V +L + + CR++T A++ +I +
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRP 397
Query: 381 SLTSLRMECCKLVSWEAFVLIGQQCQYL--EELDITENEV----------------NDEG 422
++T R+ C ++ + YL E LDI + D+
Sbjct: 398 NMTRFRL--C--------IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447
Query: 423 LKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+ I + K+ L + + +D G+ HV S C L++L++
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEI 488
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
Length = 592
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 17 EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK-ILKPLC-AETLSRTSARYPFIT 74
+++I ++ ++ DP R S SL CR ++ I+S R+ + LC T R S R+P +
Sbjct: 18 DDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLR 76
Query: 75 QLDLSLCPRA 84
L L PRA
Sbjct: 77 SLKLKGKPRA 86
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 109/260 (41%), Gaps = 36/260 (13%)
Query: 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVG--LSSLIKGADYLQQL-- 283
LE L L+ C G DGL S+ C+ +K L + + G L L + L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199
Query: 284 -ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS--LKEL---SLSK 337
+ ++ DL N L S+K D + ++ +G + + L+E SL++
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEI----LELVGFFKAAANLEEFCGGSLNE 255
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM--ECCKLVSW 395
G+ ++ ++ V RKL C ++Y N + +R L+
Sbjct: 256 DIGMPEKYMNLVFP-----RKL---CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSN----------IT 444
E + Q+C LE L+ T N + D GL+ +++ C +L L++ ++ ++
Sbjct: 308 EDHCTLIQKCPNLEVLE-TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 445 DEGLKHVGSTCSMLKELDLY 464
GL + C L+ + +Y
Sbjct: 367 QRGLIALAQGCQELEYMAVY 386
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 203 EIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSK 261
+IR LDL Y L TE + K LE VLE + I D GL + CK LK L + +
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLE--VLETRNVIGDRGLEVLAQYCKQLKRLRIER 351
Query: 262 CQN----------ISHVGLSSLIKGADYLQQLILAYSFWVSADLS------KCLHNFPML 305
+ +S GL +L +G L+ + + S + L K L +F ++
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411
Query: 306 ---QSIKFEDCPVARSGIKAIGNWHGSLKELSLS-KCSGVTDEELSFVVQSHKELRKLDI 361
+ + D P+ +G++++ L+ + + G+TD LS++ Q +R + +
Sbjct: 412 LLDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECC 390
+ + + ++ C +L L M C
Sbjct: 471 GYVGE-SDEGLMEFSRGCPNLQKLEMRGC 498
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
+C +++ L L L +++ + + K L L L GC G + L ++ SC L LNL
Sbjct: 78 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 137
Query: 260 SKCQNIS--HVGLSSLIKGADYLQQLILA--YSFWVSADLSKCLHNFPMLQSIKFEDCPV 315
S C + + HV + ++ ++ + QL L+ +DLS + P L + D +
Sbjct: 138 SWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 196
Query: 316 ARSGIKAIGNWHGSLKELSLSKCSGVTDEEL 346
++ L+ LSLS+C + E L
Sbjct: 197 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 227
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELD 412
EL K+ C R AS S+ +T M+ V E L G QC L+ L
Sbjct: 28 ELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVI-EVSTLHGILSQCSKLQNLS 86
Query: 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+ ++D + ++++ S L L L CS ++ L+ + S+CS L EL+L
Sbjct: 87 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 137
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
+C +++ L L L +++ + + K L L L GC G + L ++ SC L LNL
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175
Query: 260 SKCQNIS--HVGLSSLIKGADYLQQLILA--YSFWVSADLSKCLHNFPMLQSIKFEDCPV 315
S C + + HV + ++ ++ + QL L+ +DLS + P L + D +
Sbjct: 176 SWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 316 ARSGIKAIGNWHGSLKELSLSKCSGVTDEEL 346
++ L+ LSLS+C + E L
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 401 IGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460
I QC L+ L + ++D + ++++ S L L L CS ++ L+ + S+CS L E
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172
Query: 461 LDL 463
L+L
Sbjct: 173 LNL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,020,912
Number of Sequences: 62578
Number of extensions: 429018
Number of successful extensions: 871
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 26
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)