Query 012207
Match_columns 468
No_of_seqs 374 out of 3588
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 00:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 5.6E-36 1.2E-40 254.4 13.2 382 12-463 72-459 (483)
2 KOG4341 F-box protein containi 99.9 1.1E-27 2.3E-32 204.3 7.6 292 151-467 139-437 (483)
3 PLN00113 leucine-rich repeat r 99.9 5.3E-26 1.1E-30 235.1 15.9 354 63-440 85-438 (968)
4 KOG2120 SCF ubiquitin ligase, 99.9 5.7E-26 1.2E-30 185.3 10.3 269 11-313 97-373 (419)
5 PLN00113 leucine-rich repeat r 99.9 5.6E-25 1.2E-29 227.5 16.5 381 63-467 156-582 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.6E-24 5.7E-29 191.2 2.9 154 98-262 77-231 (873)
7 KOG4194 Membrane glycoprotein 99.9 2.9E-24 6.2E-29 191.0 -1.7 364 71-463 78-446 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 9.9E-18 2.1E-22 151.7 23.2 285 155-468 3-319 (319)
9 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-16 5.2E-21 142.6 22.2 283 129-440 2-317 (319)
10 KOG0444 Cytoskeletal regulator 99.7 3.3E-20 7.1E-25 167.1 -4.3 369 70-468 6-374 (1255)
11 PLN03210 Resistant to P. syrin 99.7 1.2E-17 2.7E-22 173.3 12.4 290 149-468 610-905 (1153)
12 KOG2120 SCF ubiquitin ligase, 99.7 1.9E-17 4.2E-22 135.8 7.8 185 253-440 186-373 (419)
13 PLN03210 Resistant to P. syrin 99.7 1.9E-16 4E-21 164.6 13.1 346 64-445 551-908 (1153)
14 KOG0444 Cytoskeletal regulator 99.7 1.3E-18 2.7E-23 157.0 -6.3 344 97-467 5-350 (1255)
15 KOG1947 Leucine rich repeat pr 99.6 2E-15 4.4E-20 145.1 11.6 273 10-285 43-328 (482)
16 KOG1947 Leucine rich repeat pr 99.5 5.7E-14 1.2E-18 135.0 10.6 137 225-361 187-328 (482)
17 KOG1909 Ran GTPase-activating 99.5 9.6E-13 2.1E-17 111.1 13.1 201 251-456 91-325 (382)
18 KOG0618 Serine/threonine phosp 99.5 8.6E-15 1.9E-19 138.2 1.0 223 226-467 241-487 (1081)
19 KOG1909 Ran GTPase-activating 99.4 3E-12 6.6E-17 108.1 12.1 190 274-467 88-309 (382)
20 KOG0472 Leucine-rich repeat pr 99.4 4.4E-15 9.6E-20 127.2 -6.6 111 349-468 430-540 (565)
21 KOG3207 Beta-tubulin folding c 99.4 1.8E-13 3.8E-18 118.8 2.7 212 224-440 119-336 (505)
22 KOG0618 Serine/threonine phosp 99.3 3.8E-14 8.1E-19 134.0 -3.6 80 72-161 46-125 (1081)
23 KOG3207 Beta-tubulin folding c 99.3 6.4E-13 1.4E-17 115.4 1.9 215 200-421 119-341 (505)
24 KOG4237 Extracellular matrix p 99.2 1.7E-12 3.6E-17 111.4 -0.9 131 177-314 68-199 (498)
25 KOG4237 Extracellular matrix p 99.1 3.7E-12 7.9E-17 109.3 -2.0 90 350-443 270-359 (498)
26 PRK15387 E3 ubiquitin-protein 99.1 2.3E-10 5.1E-15 111.3 6.9 263 126-450 202-464 (788)
27 KOG0472 Leucine-rich repeat pr 99.0 7.1E-12 1.5E-16 107.9 -3.9 109 326-444 433-541 (565)
28 PF12937 F-box-like: F-box-lik 99.0 1.1E-10 2.5E-15 70.9 2.3 38 12-51 1-38 (47)
29 PRK15387 E3 ubiquitin-protein 99.0 1.7E-10 3.6E-15 112.3 4.6 235 176-467 222-456 (788)
30 KOG3665 ZYG-1-like serine/thre 98.9 1.8E-09 3.9E-14 104.8 7.7 152 304-462 123-281 (699)
31 KOG3665 ZYG-1-like serine/thre 98.9 9.6E-09 2.1E-13 99.8 9.9 156 252-412 122-281 (699)
32 KOG2982 Uncharacterized conser 98.8 4.6E-09 1E-13 87.3 5.6 106 328-436 173-285 (418)
33 KOG2982 Uncharacterized conser 98.8 5E-09 1.1E-13 87.1 5.0 231 227-462 46-285 (418)
34 COG5238 RNA1 Ran GTPase-activa 98.8 1.4E-07 3E-12 77.7 12.6 168 297-467 114-314 (388)
35 PF14580 LRR_9: Leucine-rich r 98.7 9E-09 2E-13 81.7 3.3 104 353-462 41-146 (175)
36 PRK15370 E3 ubiquitin-protein 98.7 6E-08 1.3E-12 95.3 8.8 232 176-449 199-433 (754)
37 PF00646 F-box: F-box domain; 98.6 1.1E-08 2.3E-13 62.8 1.6 40 11-52 2-41 (48)
38 PF14580 LRR_9: Leucine-rich r 98.6 6.9E-09 1.5E-13 82.3 0.7 107 353-467 18-124 (175)
39 KOG1259 Nischarin, modulator o 98.6 2.4E-08 5.2E-13 83.3 3.2 127 328-467 284-410 (490)
40 PRK15370 E3 ubiquitin-protein 98.5 3.2E-07 7E-12 90.3 8.9 104 303-421 325-430 (754)
41 KOG4658 Apoptotic ATPase [Sign 98.5 3.5E-08 7.7E-13 98.5 1.5 131 175-310 544-675 (889)
42 KOG1259 Nischarin, modulator o 98.5 3.6E-08 7.9E-13 82.2 0.8 127 302-441 283-410 (490)
43 smart00256 FBOX A Receptor for 98.5 2.1E-07 4.5E-12 54.9 3.7 35 15-51 1-35 (41)
44 COG5238 RNA1 Ran GTPase-activa 98.4 5.6E-06 1.2E-10 68.5 12.7 162 200-364 90-282 (388)
45 KOG4658 Apoptotic ATPase [Sign 98.4 1.4E-07 3E-12 94.4 3.3 16 379-394 769-784 (889)
46 KOG0617 Ras suppressor protein 98.4 1.5E-09 3.3E-14 82.5 -8.1 154 278-444 33-186 (264)
47 PF13855 LRR_8: Leucine rich r 98.3 1.1E-07 2.4E-12 61.7 -0.8 60 406-467 1-60 (61)
48 KOG1859 Leucine-rich repeat pr 98.3 1E-07 2.2E-12 89.1 -1.4 52 196-247 78-130 (1096)
49 KOG3864 Uncharacterized conser 98.2 1.2E-06 2.7E-11 69.0 4.3 89 304-394 102-190 (221)
50 KOG3864 Uncharacterized conser 98.1 3.1E-06 6.6E-11 66.9 3.9 84 329-415 102-185 (221)
51 PF13855 LRR_8: Leucine rich r 98.0 9.2E-07 2E-11 57.3 -0.2 59 380-440 1-59 (61)
52 KOG0617 Ras suppressor protein 98.0 5.9E-08 1.3E-12 74.0 -7.1 34 200-234 54-87 (264)
53 KOG1859 Leucine-rich repeat pr 97.9 4.7E-06 1E-10 78.4 2.0 108 349-467 182-290 (1096)
54 PLN03150 hypothetical protein; 97.6 9.1E-05 2E-09 72.7 6.4 107 356-467 420-526 (623)
55 PF12799 LRR_4: Leucine Rich r 97.6 9.4E-05 2E-09 43.7 3.7 38 406-445 1-38 (44)
56 PLN03150 hypothetical protein; 97.2 0.00079 1.7E-08 66.3 7.2 106 228-338 420-525 (623)
57 COG4886 Leucine-rich repeat (L 97.2 0.00026 5.6E-09 66.1 3.7 175 251-444 115-290 (394)
58 COG4886 Leucine-rich repeat (L 97.2 0.00038 8.1E-09 65.1 4.7 199 206-425 97-296 (394)
59 PF12799 LRR_4: Leucine Rich r 97.1 0.00045 9.9E-09 40.8 2.7 35 430-467 1-35 (44)
60 KOG2123 Uncharacterized conser 97.0 0.00024 5.2E-09 59.3 1.1 102 149-258 18-123 (388)
61 KOG4308 LRR-containing protein 97.0 0.00029 6.3E-09 66.1 1.2 178 270-452 107-311 (478)
62 PRK15386 type III secretion pr 96.9 0.0019 4.1E-08 58.5 5.4 139 274-440 48-187 (426)
63 KOG4308 LRR-containing protein 96.8 0.00033 7.2E-09 65.7 0.5 145 297-444 166-332 (478)
64 KOG1644 U2-associated snRNP A' 96.8 0.00087 1.9E-08 53.4 2.7 105 354-465 42-149 (233)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00048 1E-08 57.2 1.1 41 400-440 85-126 (260)
66 smart00367 LRR_CC Leucine-rich 96.8 0.0019 4.2E-08 33.0 3.0 24 429-452 1-24 (26)
67 PRK15386 type III secretion pr 96.8 0.0027 5.9E-08 57.6 5.8 12 380-391 156-167 (426)
68 KOG2123 Uncharacterized conser 96.7 0.00028 6.1E-09 58.9 -0.7 102 353-462 18-123 (388)
69 KOG1644 U2-associated snRNP A' 96.7 0.00078 1.7E-08 53.6 1.6 63 200-263 62-124 (233)
70 smart00367 LRR_CC Leucine-rich 96.7 0.0023 5E-08 32.8 2.9 23 380-402 2-24 (26)
71 KOG2739 Leucine-rich acidic nu 96.6 0.00094 2E-08 55.5 1.3 86 175-260 64-151 (260)
72 KOG4579 Leucine-rich repeat (L 96.6 0.0011 2.4E-08 49.3 1.5 87 354-444 27-113 (177)
73 PLN03215 ascorbic acid mannose 96.3 0.0037 8.1E-08 56.0 3.4 39 10-49 2-40 (373)
74 KOG4579 Leucine-rich repeat (L 96.2 0.0025 5.4E-08 47.5 1.4 126 329-461 28-153 (177)
75 KOG0531 Protein phosphatase 1, 96.0 0.00053 1.1E-08 64.2 -3.6 106 200-316 93-199 (414)
76 KOG2997 F-box protein FBX9 [Ge 95.7 0.0095 2.1E-07 50.9 3.2 41 11-51 106-149 (366)
77 PF13516 LRR_6: Leucine Rich r 95.5 0.007 1.5E-07 30.2 1.1 19 430-449 2-20 (24)
78 KOG0281 Beta-TrCP (transducin 95.4 0.012 2.6E-07 50.7 2.6 41 9-51 72-116 (499)
79 PF13516 LRR_6: Leucine Rich r 95.1 0.026 5.6E-07 28.1 2.4 23 405-427 1-23 (24)
80 KOG0531 Protein phosphatase 1, 94.9 0.01 2.2E-07 55.7 1.1 106 326-444 93-199 (414)
81 KOG0532 Leucine-rich repeat (L 93.7 0.0086 1.9E-07 55.7 -2.1 32 408-440 213-244 (722)
82 PF13013 F-box-like_2: F-box-l 93.6 0.11 2.4E-06 37.5 3.8 30 11-42 21-50 (109)
83 KOG0532 Leucine-rich repeat (L 92.5 0.0036 7.8E-08 58.1 -6.3 125 328-467 121-245 (722)
84 smart00368 LRR_RI Leucine rich 92.2 0.22 4.7E-06 25.9 2.8 20 407-426 3-22 (28)
85 smart00368 LRR_RI Leucine rich 92.1 0.16 3.4E-06 26.4 2.1 24 429-453 1-24 (28)
86 KOG3763 mRNA export factor TAP 91.7 0.41 8.9E-06 44.9 5.7 41 350-390 214-254 (585)
87 PF13504 LRR_7: Leucine rich r 90.1 0.24 5.2E-06 22.2 1.4 10 431-440 2-11 (17)
88 KOG3763 mRNA export factor TAP 86.7 1.5 3.3E-05 41.3 5.5 91 244-335 210-308 (585)
89 KOG0274 Cdc4 and related F-box 86.4 0.29 6.3E-06 47.1 0.9 46 8-55 104-149 (537)
90 PF00560 LRR_1: Leucine Rich R 85.7 0.24 5.1E-06 24.0 -0.0 12 408-419 2-13 (22)
91 PF13306 LRR_5: Leucine rich r 84.8 0.12 2.6E-06 39.3 -2.1 10 124-133 11-20 (129)
92 PF09372 PRANC: PRANC domain; 82.3 1.2 2.7E-05 31.7 2.5 26 9-36 69-94 (97)
93 smart00369 LRR_TYP Leucine-ric 81.6 1.7 3.6E-05 21.9 2.1 17 406-422 2-18 (26)
94 smart00370 LRR Leucine-rich re 81.6 1.7 3.6E-05 21.9 2.1 17 406-422 2-18 (26)
95 PF13306 LRR_5: Leucine rich r 80.5 0.99 2.1E-05 34.1 1.5 9 251-259 57-65 (129)
96 KOG3926 F-box proteins [Amino 77.4 4.3 9.3E-05 34.4 4.3 40 9-49 199-238 (332)
97 PF07723 LRR_2: Leucine Rich R 70.6 3.6 7.8E-05 20.9 1.5 8 330-337 2-9 (26)
98 smart00365 LRR_SD22 Leucine-ri 58.3 11 0.00023 19.2 1.8 13 406-418 2-14 (26)
99 KOG3735 Tropomodulin and leiom 46.6 47 0.001 29.7 5.0 96 345-440 189-293 (353)
100 smart00364 LRR_BAC Leucine-ric 38.9 21 0.00046 18.2 1.1 14 407-420 3-16 (26)
101 KOG3735 Tropomodulin and leiom 35.2 1.3E+02 0.0027 27.2 5.9 29 242-270 188-216 (353)
102 PF03382 DUF285: Mycoplasma pr 34.5 27 0.00059 26.0 1.7 10 404-414 59-68 (120)
103 KOG4242 Predicted myosin-I-bin 30.0 1.1E+02 0.0024 29.0 5.0 45 404-449 438-486 (553)
104 KOG2502 Tub family proteins [G 28.1 37 0.00081 30.4 1.6 41 10-51 43-90 (355)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=5.6e-36 Score=254.42 Aligned_cols=382 Identities=23% Similarity=0.406 Sum_probs=284.7
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccccchHHHHhccCCCCcEEecCCCCC-CChhHHH
Q 012207 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPR-ANDDALS 90 (468)
Q Consensus 12 ~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~ 90 (468)
--.||+|++..||+ +|. .+.+.+++.||+.|+..+.+. .+.+++++...+. +....+.
T Consensus 72 ~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 72 SRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred cccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchhcCCCccee
Confidence 34599999999999 995 999999999999999876543 2345555543322 2223333
Q ss_pred hhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHH
Q 012207 91 IVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIG 169 (468)
Q Consensus 91 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 169 (468)
.+ .......++.|.++++....+..+..+...||++++|.+.+|..+++.....+++ |++|++|++..|..+++..++
T Consensus 131 ~~-~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 131 NM-ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred hH-hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 33 4556678899999998888888888888889999999888888888877777765 788888888888778887777
Q ss_pred HHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHh
Q 012207 170 RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249 (468)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 249 (468)
.+..+|++|++|++++|+.+...++..+.+++..++.+... ||.......+.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k------------------------GC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK------------------------GCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc------------------------ccccccHHHHHHHhc
Confidence 77777888888888887776666665555555554444443 444555555555555
Q ss_pred cCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
+++-+.++++..|..+++.++..+...+..|+.++.+++.. +++..+..+.+++++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhcCCCc
Confidence 56666666666666666665555555555555555544432 445666777777888
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh---cCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQ 406 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~ 406 (468)
|+.|.+++|..+++.++..+..+++.|+.+++..|..+.+..+..++.+|+.|+.+.++.|..+++.++..+.. ...
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 88888888888888888888888888888888888888888788888888999999998888888887776652 456
Q ss_pred CCCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 407 YLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 407 ~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
.|+.+.+.++ .+++.....+..|++|+.+++.+|..++.+++..+...+|+++....
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 7888888887 67777888888899999999999999998899999989998886543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=1.1e-27 Score=204.29 Aligned_cols=292 Identities=26% Similarity=0.448 Sum_probs=228.5
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
.|++|.+.++..+.+..+..+...||+++.|.+.+|..+++.....+...| ++|++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C------------------------~~l~~ 194 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC------------------------RKLRH 194 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc------------------------chhhh
Confidence 455555555555555555555555555555555555555554444444444 45555
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh-cCCCCCeeE
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH-NFPMLQSIK 309 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ 309 (468)
+++..|..+++..+..+..+|++|++++++.|+.+...++..+..++..++.+...+|.....+.....+ .++.+..++
T Consensus 195 l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 195 LNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 5555566677777777777788888888888877777777777777777777777777776666555544 456677777
Q ss_pred ecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEcc
Q 012207 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (468)
Q Consensus 310 l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (468)
+..|. ++++....+...+..|+.|..++|..+++..+..+..++++|+.|.++.|..+++.++..+..+++.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 77765 88888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhccc----CCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 389 CCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISR----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
+|..+++..+..+..+||.|+++.++.| .++|++...+.. ...|+.+.+++|+.+++..++.+. .|++|+.+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l 433 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIEL 433 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeee
Confidence 9999999889999999999999999998 789998887763 568999999999999998777766 7999999999
Q ss_pred CCCC
Q 012207 464 YRFS 467 (468)
Q Consensus 464 ~~c~ 467 (468)
.+|+
T Consensus 434 ~~~q 437 (483)
T KOG4341|consen 434 IDCQ 437 (483)
T ss_pred echh
Confidence 9886
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=5.3e-26 Score=235.12 Aligned_cols=354 Identities=17% Similarity=0.118 Sum_probs=187.8
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
++..+..+++|+.|+++++. +.......+ ...+++|++|+++++....... ...+++|++|+++++. +....
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~~~~ 156 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQ-LSGPIPDDI--FTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LSGEI 156 (968)
T ss_pred CChHHhCCCCCCEEECCCCc-cCCcCChHH--hccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-ccccC
Confidence 34556677888888887663 221111111 2345778888887654211111 0246777888887763 33333
Q ss_pred HHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccc
Q 012207 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (468)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (468)
...+..+++|++|+++++... ......+. .+++|++|++++|..... . ......+++|+.|++++|.+.......+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~l~~~-~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLV-GKIPNSLT-NLTSLEFLTLASNQLVGQ-I-PRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ChHHhcCCCCCEEECccCccc-ccCChhhh-hCcCCCeeeccCCCCcCc-C-ChHHcCcCCccEEECcCCccCCcCChhH
Confidence 355777788888888775422 11112222 267788888777642211 1 1222366777777777777666666667
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcC
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF 302 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 302 (468)
.++++|++|++++|. +.......+.. +++|+.|+++++..... +...+..+++|+.|+++++ .+....+..+..+
T Consensus 233 ~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l 307 (968)
T PLN00113 233 GGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDN-SLSGEIPELVIQL 307 (968)
T ss_pred hcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCC-eeccCCChhHcCC
Confidence 777777777777743 33222333444 67777777776643211 1222345667777777765 3444555566667
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|++.+|.+....+..+. .+++|+.|+++++. +... ++..+..+++|+.|++++|.. ..... .....+++|
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n~l-~~~~p-~~~~~~~~L 382 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTNNL-TGEIP-EGLCSSGNL 382 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCCee-EeeCC-hhHhCcCCC
Confidence 7777777777766554444443 56677777776642 3221 333445566677777766542 11111 111133445
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+.|+++++. +.......+. .+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 383 ~~L~l~~n~-l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 383 FKLILFSNS-LEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CEEECcCCE-ecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 555554432 2211111222 4444555555544444433333444444444444444
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.7e-26 Score=185.27 Aligned_cols=269 Identities=24% Similarity=0.348 Sum_probs=135.7
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc-------cchHHHHhccCCCCcEEecCCCCC
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC-------AETLSRTSARYPFITQLDLSLCPR 83 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~ 83 (468)
.|+.|||||+..||+ .|+ .+++.+++.|||||+++..... .|...+ +..+..+.++ .+..+.+... .
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~-lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~-~ 170 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDES-LWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARS-F 170 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhcccccc-ceeeeccCCCccChhHHHHHHhC--CeEEEEcchh-h
Confidence 489999999999999 998 9999999999999999865431 222221 1222222221 1222222211 0
Q ss_pred CChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCccc
Q 012207 84 ANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI 163 (468)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 163 (468)
..+..+... ....-..|+++++++. .++...+..+...|.+|+.|.+.+. .++|.....+++-.+|+.|+++.|.++
T Consensus 171 ~~~prlae~-~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 171 MDQPRLAEH-FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hcCchhhhh-hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeecccccccc
Confidence 111111111 1222234555555542 2455555555555555555555554 344444444555555555555555444
Q ss_pred ChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCC-CCChH
Q 012207 164 TDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH-GIDDD 242 (468)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~ 242 (468)
+..++..+...|+.|.+|++++|...++.....+..- -++|+.|+++|+. ++...
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi------------------------se~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI------------------------SETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh------------------------chhhhhhhhhhhHhhhhhh
Confidence 4444444444444444444444433333211111112 2444444444432 12222
Q ss_pred HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCC
Q 012207 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313 (468)
Q Consensus 243 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 313 (468)
.+..+...||+|.+|+++++..+.+ +....+-+++.|++|.++.|..+..+..-.+...|+|.+|++.|+
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3444445566666666666655554 233334445566666666665555555545555555555555553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.6e-25 Score=227.50 Aligned_cols=381 Identities=17% Similarity=0.127 Sum_probs=174.5
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
++..+..+++|+.|+++++... ..... ....+++|++|+++++.. .......+ ..+++|+.|+++++. +....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~-~~~p~---~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLV-GKIPN---SLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNN-LSGEI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCccc-ccCCh---hhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCc-cCCcC
Confidence 4555677788888888776421 11111 123456777777766532 21111222 256666666666653 33222
Q ss_pred HHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccc
Q 012207 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (468)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (468)
...+..+++|++|++.++.. .......+ ..+++|+.|+++++.. .... ......+++|++|++++|.+.......+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNL-TGPIPSSL-GNLKNLQYLFLYQNKL-SGPI-PPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCcee-ccccChhH-hCCCCCCEEECcCCee-eccC-chhHhhccCcCEEECcCCeeccCCChhH
Confidence 34556666666666665432 11111111 2255666666655421 1111 1111244555555555554444444444
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCC-------------
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------------- 289 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 289 (468)
.++++|+.|+++++. +.......+.. +++|+.|++.++..... +...+..+++|+.|+++++.
T Consensus 305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 305 IQLQNLEILHLFSNN-FTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred cCCCCCcEEECCCCc-cCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 445555555554422 22111122222 44444444444432111 11122233334444433321
Q ss_pred ----------CCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCC-----
Q 012207 290 ----------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK----- 354 (468)
Q Consensus 290 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----- 354 (468)
.+....+..+..+++|+.|++.+|.++...+..+. .+++|+.|+++++ .++.. +......++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L 457 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN-NLQGR-INSRKWDMPSLQML 457 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC-cccCc-cChhhccCCCCcEE
Confidence 12222333444455555555555544433222222 3444444444442 12111 111122233
Q ss_pred ------------------CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 355 ------------------ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 355 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
+|+.|++++|. +.... ......+++|+.|++++|. +.......+. .+++|++|++++|
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N 533 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAV-PRKLGSLSELMQLKLSENK-LSGEIPDELS-SCKKLVSLDLSHN 533 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCc-cCCcc-ChhhhhhhccCEEECcCCc-ceeeCChHHc-CccCCCEEECCCC
Confidence 44444444443 21111 1112245566666666543 2222222232 5667777777777
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.++...+..+..+++|+.|++++| +++.. ++.....+++|+.|++++|+
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQN-QLSGE-IPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cccccCChhHhCcccCCEEECCCC-ccccc-CChhHhcCcccCEEeccCCc
Confidence 776666566666777777777777 55532 33333467777777777775
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-24 Score=191.25 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=66.9
Q ss_pred cCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+..+.|+++++. +....+..+ ..+|+|+++.+..+ .++.. +.++. ..+|+.|++..+. ++...-+.+.. .+
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~N-~Lt~I--P~f~~~sghl~~L~L~~N~-I~sv~se~L~~-l~ 149 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNKN-ELTRI--PRFGHESGHLEKLDLRHNL-ISSVTSEELSA-LP 149 (873)
T ss_pred ccceeeeeccccc-cccCcHHHH-hcCCcceeeeeccc-hhhhc--ccccccccceeEEeeeccc-cccccHHHHHh-Hh
Confidence 3444555555542 222222222 25555555555544 22221 12222 3345555555532 22222222222 45
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.|++|+++.+ .++......+ ..-+++++|++++|.++.-....+.++.+|..|.++. +.++......+.. +++|+.
T Consensus 150 alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~-L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR-LPKLES 225 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCC-CCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhh-cchhhh
Confidence 5555555543 2222211111 1224555555555555555555555555555555555 3444444333333 555555
Q ss_pred EEccCC
Q 012207 257 LNLSKC 262 (468)
Q Consensus 257 L~l~~~ 262 (468)
|++..+
T Consensus 226 LdLnrN 231 (873)
T KOG4194|consen 226 LDLNRN 231 (873)
T ss_pred hhcccc
Confidence 555544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-24 Score=190.99 Aligned_cols=364 Identities=21% Similarity=0.206 Sum_probs=254.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
+..+.|+++++. +.+..+.. +...++|+.+++.++. -..++.+.....+|+.|+|.++ .+.....+.++.++
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~---f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEF---FYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALP 149 (873)
T ss_pred cceeeeeccccc-cccCcHHH---HhcCCcceeeeeccch---hhhcccccccccceeEEeeecc-ccccccHHHHHhHh
Confidence 346678888763 44433332 3567999999997653 2345666656788999999988 56666678889999
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
.|+.|+++.+. ++......+.+ -.++++|++.++ .++......+. .+.+|..|.++.|.++.-....+.++++|+.
T Consensus 150 alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhch-hhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhh
Confidence 99999999853 44433333322 468999999986 56665544443 5568999999999998777778888999999
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc--cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCee
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (468)
|++.. +.+.......+.. +++|+.|.+..+.. +.|. .+-.+.++++|+++.+ .+......++-++++|+.|
T Consensus 226 LdLnr-N~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 226 LDLNR-NRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hhccc-cceeeehhhhhcC-chhhhhhhhhhcCcccccCc----ceeeecccceeecccc-hhhhhhcccccccchhhhh
Confidence 99988 4555443334444 89999998887652 2222 2445688999999886 4444555567788999999
Q ss_pred EecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEcc
Q 012207 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (468)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (468)
+++.|.+.......+. .+++|+.|+|+. +.++.-. +..+..+..|++|.+++|. ++...-. .+..+.+|++|+++
T Consensus 299 ~lS~NaI~rih~d~Ws-ftqkL~~LdLs~-N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr 373 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWS-FTQKLKELDLSS-NRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLR 373 (873)
T ss_pred ccchhhhheeecchhh-hcccceeEeccc-cccccCC-hhHHHHHHHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCc
Confidence 9999988776666665 678999999987 3444321 2224445789999999876 4433222 22357899999998
Q ss_pred CCCCCCH---HHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 389 CCKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 389 ~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
.. .++. .+...+. .+++|++|.+.+|++....-.++.++++|+.|++.+| .|.......+. .+ .|++|.+
T Consensus 374 ~N-~ls~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 374 SN-ELSWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-ELKELVM 446 (873)
T ss_pred CC-eEEEEEecchhhhc-cchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccc-cc-hhhhhhh
Confidence 73 3431 2333343 6899999999999988888888889999999999999 66543333333 23 5665544
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=9.9e-18 Score=151.67 Aligned_cols=285 Identities=20% Similarity=0.174 Sum_probs=174.1
Q ss_pred EeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHH---HHHHhhCCCccEeeecccCCCC--CCccccccCCCCC
Q 012207 155 LWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQEIRTLDLSYLPITE--KCLPPVVKLQYLE 229 (468)
Q Consensus 155 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~ 229 (468)
|+|..+ .++...+..+...+++|+++++.++ .+++.+. .......+.+++++++++.+.. ...
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~---------- 70 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL---------- 70 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH----------
Confidence 444442 3444444444444667888888776 3444332 2233355667777776654431 100
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccC--hhhHHHHHhcCCccceEeecCCCCCc---hhHHHHhhcC-C
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVS---ADLSKCLHNF-P 303 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~-~ 303 (468)
......+.. +++|+.|+++++.... ...+..+... ++|++|+++++.... ..+...+..+ +
T Consensus 71 -----------~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 71 -----------QSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred -----------HHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 111122333 5566666666654321 1122222333 457777776663221 1223345556 7
Q ss_pred CCCeeEecCCcCChhHHHHHH---HhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHH---
Q 012207 304 MLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINS--- 374 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~--- 374 (468)
+|+.|++.+|.++......+. ..+++|++|++++| .+++.++..+.. .+++|+.|++++|. +++.+...
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 888888888887754444333 24568999999884 566655554433 44689999999885 66555443
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCChhhHHhc----ccCCCCCEEeeCCCCccCHH
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (468)
....+++|++|++++|. +++.++..+...+ +.|++|++++|.+++.+...+ ..+++|+.+++++| .++++
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 33467889999999864 7776766666543 789999999999986655443 35688999999999 88877
Q ss_pred HHHHHH---hcC-cccCeeecCCCCC
Q 012207 447 GLKHVG---STC-SMLKELDLYRFSS 468 (468)
Q Consensus 447 ~~~~~~---~~~-~~L~~L~l~~c~~ 468 (468)
+...+. ... +.|++++|.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCCC
Confidence 655433 344 6899999998873
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.4e-16 Score=142.64 Aligned_cols=283 Identities=22% Similarity=0.235 Sum_probs=169.2
Q ss_pred EEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHH---HhcCCCCcEEeccCCCCCC--hHH---HHHHHhh
Q 012207 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRI---AACCRKLKLLCLKWCIRVT--DLG---VELVALK 200 (468)
Q Consensus 129 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~~~---~~~~~~~ 200 (468)
.|+|..+...+......+..+.+|++|.+.++. +++.+...+ ....++++.+++.++. +. ... +......
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 355554422223333455667889999999975 555444333 3456789999998863 33 222 2233345
Q ss_pred CCCccEeeecccCCCCCCccccccCC---CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcC
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQ---YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (468)
+++|+.|+++++.+.......+..+. +|++|++++|. +.+.....+.. .+..+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-----------------------~l~~~ 135 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-----------------------GLKDL 135 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-----------------------HHHhC
Confidence 77888999888766543333333222 36666666532 33222222111 11222
Q ss_pred -CccceEeecCCCCCc---hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHH---
Q 012207 278 -DYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELS--- 347 (468)
Q Consensus 278 -~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~--- 347 (468)
++|+.|++++|.... ......+..+++|++|++.+|.+.+.....+.. ..++|++|++++| .+++.+..
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 445555555443221 123344556677888888887777665555443 3358888888875 45554433
Q ss_pred HHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC----CcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCCh
Q 012207 348 FVVQSHKELRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVND 420 (468)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 420 (468)
..+..+++|+.|++++|. +++..+..+...+ +.|++|++++|. +++.+...+ ...+++|+.+++++|.+++
T Consensus 215 ~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 334456788999998876 6766666555443 789999998864 654444333 2355789999999999988
Q ss_pred hhHHhcc----cC-CCCCEEeeCCC
Q 012207 421 EGLKSIS----RC-SKLSSLKLGIC 440 (468)
Q Consensus 421 ~~~~~l~----~~-~~L~~L~l~~~ 440 (468)
.+...+. .. +.|+++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCC
Confidence 7655554 24 68888888876
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=3.3e-20 Score=167.11 Aligned_cols=369 Identities=18% Similarity=0.175 Sum_probs=238.6
Q ss_pred CCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC
Q 012207 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (468)
Q Consensus 70 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (468)
.|.++-++++++....+.....+ ..+.+++-|.+.... -..++.-...+.+|++|.+..+. +... ...+..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v---~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~-L~~v-hGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV---EQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQ-LISV-HGELSDL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH---HHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhh-hHhh-hhhhccc
Confidence 46677888887653333333322 445777888875532 22333333478889999988773 3332 3567788
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
|.|+.+.+..+. +...++..-.-.+..|+.|+++.+ .+.+.+- -....+++-.|++++|++....-.-+.++..|-
T Consensus 78 p~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~--~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHN-QLREVPT--NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhccc-cccCCCCchhcccccceeeecchh-hhhhcch--hhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 889988887753 333333322223788889999885 3443322 223567888999999887655445556788888
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeE
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (468)
.|++++ +.+..... .+.. +..|++|.+++++. ....+. -+..+++|+.|.+++.......++..+..+.+|..++
T Consensus 154 fLDLS~-NrLe~LPP-Q~RR-L~~LqtL~Ls~NPL-~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 154 FLDLSN-NRLEMLPP-QIRR-LSMLQTLKLSNNPL-NHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhcccc-chhhhcCH-HHHH-HhhhhhhhcCCChh-hHHHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 888888 44443332 3444 77899999998763 222211 1234456777777776555566777788888999999
Q ss_pred ecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccC
Q 012207 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (468)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (468)
++.|+++.. +..+. .+++|+.|++++ +.++.- ..-.+.-.+|++|+++.|. ++. ++...-.+++|+.|-+.+
T Consensus 229 lS~N~Lp~v-Pecly-~l~~LrrLNLS~-N~iteL--~~~~~~W~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 229 LSENNLPIV-PECLY-KLRNLRRLNLSG-NKITEL--NMTEGEWENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ccccCCCcc-hHHHh-hhhhhheeccCc-Cceeee--eccHHHHhhhhhhccccch-hcc--chHHHhhhHHHHHHHhcc
Confidence 998876532 22222 568999999998 456542 2222233688999998875 332 222233678888888776
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCCC
Q 012207 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFSS 468 (468)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (468)
+.++-++++.-...+.+|+.+...+|.+.- .++.+++|++|+.|.++.|.-|+ ++.-+.-+|-|+.|++..|++
T Consensus 301 -NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 301 -NKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -CcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcC
Confidence 556655554433366778888888776554 45778889999999999885555 555555688999999998875
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.2e-17 Score=173.28 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=171.6
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (468)
..+|++|++.++. +... ..-...+++|+.|+++++..+...+- ...+++|+.|++.+|......+..+.++++|
T Consensus 610 ~~~L~~L~L~~s~-l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKL--WDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccCCcEEECcCcc-cccc--ccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 4566666666543 2211 01112366777777766544333221 2256777777777764434445556667777
Q ss_pred CeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCee
Q 012207 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (468)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (468)
+.|++++|..+...... + .+++|+.|++++|..+.. +....++|+.|+++++. +. .++..+ .+++|++|
T Consensus 684 ~~L~L~~c~~L~~Lp~~-i--~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~-~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 684 EDLDMSRCENLEILPTG-I--NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IE-EFPSNL-RLENLDEL 752 (1153)
T ss_pred CEEeCCCCCCcCccCCc-C--CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-cc-cccccc-cccccccc
Confidence 77777776655433221 1 266777777777653321 12224567777776653 11 122211 45667777
Q ss_pred EecCCcCCh---h--H-HHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 309 KFEDCPVAR---S--G-IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 309 ~l~~~~~~~---~--~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
.+.++.... . . .......+++|+.|++++|..... ++..+.++++|+.|++++|..+...+ .. ..+++|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL 827 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TG-INLESL 827 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CC-CCcccc
Confidence 666533110 0 0 001111346888888888654432 45556778899999998887665322 11 157889
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeee
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 462 (468)
+.|++++|..+.. +....++|+.|++++|.++.. +..+..+++|+.|++++|.+++. +......+++|+.++
T Consensus 828 ~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 828 ESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVD 899 (1153)
T ss_pred CEEECCCCCcccc-----ccccccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeee
Confidence 9999998876542 122346888999988888764 35677888999999999878774 443445678888888
Q ss_pred cCCCCC
Q 012207 463 LYRFSS 468 (468)
Q Consensus 463 l~~c~~ 468 (468)
+.+|++
T Consensus 900 l~~C~~ 905 (1153)
T PLN03210 900 FSDCGA 905 (1153)
T ss_pred cCCCcc
Confidence 888864
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-17 Score=135.84 Aligned_cols=185 Identities=18% Similarity=0.298 Sum_probs=81.9
Q ss_pred CCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc-CChhHHHHHHHhCCCCC
Q 012207 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLK 331 (468)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~ 331 (468)
.|+.++++... ++...+..++..|..|+.|.+.+. .+.+.+...+++-.+|+.|+++.|. ++..+...+...|..|.
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34555554432 334444444444555555555443 3444444444444455555555443 44444444444444555
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
+|+++.|...++..-..+..--++|+.|++++|. ++.+..+..+...||+|.+|+++.|..+++..+..+. .++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhee
Confidence 5555544333333111111122444555554432 2233334444444555555555554444443333333 4445555
Q ss_pred EEccCC-CCChhhHHhcccCCCCCEEeeCCC
Q 012207 411 LDITEN-EVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 411 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|.++.| .+..+.+..+...|+|.+|++.+|
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 555444 333333333444445555555443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.9e-16 Score=164.61 Aligned_cols=346 Identities=16% Similarity=0.169 Sum_probs=194.6
Q ss_pred HHHhccCCCCcEEecCCCC--CCCh---hHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCcc
Q 012207 64 SRTSARYPFITQLDLSLCP--RAND---DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEM 138 (468)
Q Consensus 64 ~~~~~~~~~l~~l~l~~~~--~~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 138 (468)
...+..+++|+.|.+.... .... .....+ .....+|+.|.+.++.. ..++..+ ...+|++|++.++ .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s-~l 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGS-KL 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCc-cc
Confidence 3456677778777775321 0000 000011 12234577777765421 1122222 4578888888876 34
Q ss_pred CHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCC
Q 012207 139 GDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218 (468)
Q Consensus 139 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (468)
... +..+..+++|+.|+++++..+.... .+ ..+++|+.|++.+|..+...+ .....+++|+.|++++|......
T Consensus 624 ~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 624 EKL-WDGVHSLTGLRNIDLRGSKNLKEIP--DL-SMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccc-ccccccCCCCCEEECCCCCCcCcCC--cc-ccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCcc
Confidence 432 2345668889999988765443322 22 237889999998886655433 23347788999999887332222
Q ss_pred ccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCC------c
Q 012207 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV------S 292 (468)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~ 292 (468)
+.. .++++|+.|++++|..+... .....+|+.|++.++. +.. ++.. ..+++|++|.+..+... .
T Consensus 698 p~~-i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n~-i~~--lP~~-~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 698 PTG-INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDETA-IEE--FPSN-LRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCc-CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCCCc-ccc--cccc-ccccccccccccccchhhcccccc
Confidence 222 26788888888887654322 1224678888887765 211 1111 13466776766553210 0
Q ss_pred hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHH
Q 012207 293 ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI 372 (468)
Q Consensus 293 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (468)
..........++|+.|++++|......+..+. .+++|+.|++++|..+.. ++... .+++|+.|++++|..+...
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~-- 841 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF-- 841 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc--
Confidence 00111122346788888877764444444444 677888888877765442 22212 4677888888877655421
Q ss_pred HHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 373 NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
....++|+.|+++++ .++. ++.....+++|+.|++++| .+... ...+..+++|+.+++++|..++.
T Consensus 842 ---p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 842 ---PDISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ---cccccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCccccc
Confidence 122467778887763 3432 2222236778888888775 44442 23445677777778877766653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=1.3e-18 Score=157.03 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=231.9
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+-++-++++++. +....++.-.+.++.++.|.+... .+...+ ..++.+.+|++|.+..+..++-. ..+. .+|
T Consensus 5 VLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt-~L~~vP-eEL~~lqkLEHLs~~HN~L~~vh--GELs-~Lp 78 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT-KLEQVP-EELSRLQKLEHLSMAHNQLISVH--GELS-DLP 78 (1255)
T ss_pred ccceeecccccCCc-CCCCcCchhHHHhhheeEEEechh-hhhhCh-HHHHHHhhhhhhhhhhhhhHhhh--hhhc-cch
Confidence 35667778888765 333333444447889999999876 455444 67899999999999886533221 2222 378
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.|+++.+..+ .+...+++.-+-.+..|+.|+++.|.+. +.+..+....++-.|++++ +++....-..+.. +..|-.
T Consensus 79 ~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-LtDLLf 154 (1255)
T KOG0444|consen 79 RLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-LTDLLF 154 (1255)
T ss_pred hhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc-CccccCCchHHHh-hHhHhh
Confidence 8999888775 3333333333337889999999999776 5667777788899999998 5565554444444 788888
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH-HHHHHHhCCCCCeEec
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG-IKAIGNWHGSLKELSL 335 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l 335 (468)
|+++++.. ..++.-...+.+|++|.+++++ +...-...+..+++|+.|.++++.-+-.. +..+- .+.+|..+++
T Consensus 155 LDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDl 229 (1255)
T KOG0444|consen 155 LDLSNNRL---EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDL 229 (1255)
T ss_pred hccccchh---hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccc
Confidence 89988752 2233345566789999998874 33333344556667888888887533222 22222 4578999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+. ++++- ++..+-.+++|+.|++++|. ++...... ..+.+|+.|+++.. .++. ++...-.+++|+.|.+.+
T Consensus 230 S~-N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~~~--~~W~~lEtLNlSrN-QLt~--LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 230 SE-NNLPI--VPECLYKLRNLRRLNLSGNK-ITELNMTE--GEWENLETLNLSRN-QLTV--LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred cc-cCCCc--chHHHhhhhhhheeccCcCc-eeeeeccH--HHHhhhhhhccccc-hhcc--chHHHhhhHHHHHHHhcc
Confidence 87 45542 45555677899999999876 55443322 34688999999883 3432 222222678999999999
Q ss_pred CCCChhhH-HhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 416 NEVNDEGL-KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 416 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|.++-+++ ..++++.+|+.+...+| .+.- ++.-...|+.|+.|.+..|.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN-~LEl--VPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANN-KLEL--VPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhcc-cccc--CchhhhhhHHHHHhcccccc
Confidence 97776543 45788889999999988 7763 44444589999999998774
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.62 E-value=2e-15 Score=145.08 Aligned_cols=273 Identities=28% Similarity=0.362 Sum_probs=122.3
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc-----cchHHHHhccCCCCcEEecCCCCCC
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC-----AETLSRTSARYPFITQLDLSLCPRA 84 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~l~l~~~~~~ 84 (468)
......|++....++. ..+ ..+......++++|..........+.... ..........+..+..+........
T Consensus 43 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLL-KLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSKV 120 (482)
T ss_pred eeeeccccchhhhccc-ccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCccc
Confidence 3566677788888777 665 67777788888888876554322221111 1112223333333333332222111
Q ss_pred ChhHHHhhh-cccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCcc-CHHHHH-HHHcCCCCCeEeccCCc
Q 012207 85 NDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEM-GDAAAA-AIAEAKNLERLWLARCK 161 (468)
Q Consensus 85 ~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~-~l~~~~~L~~L~l~~~~ 161 (468)
.......+. ........ .................+...+..++.+.+..+... ...... ....++.|+.+.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 121 STLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred cccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 111111110 00011111 111111111111222222223334444444333211 111112 22235666666666665
Q ss_pred ccChHhHHHHHhcCCCCcEEeccC-CCCCChHH--HHHHHhhCCCccEeeecccC-CCCCCcccccc-CCCCCeeeecCC
Q 012207 162 LITDLGIGRIAACCRKLKLLCLKW-CIRVTDLG--VELVALKCQEIRTLDLSYLP-ITEKCLPPVVK-LQYLEDLVLEGC 236 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~ 236 (468)
.+.+.++..+...+++|+.|++++ +......+ ...+...|++|+.|+++.+. +++..+..+.. +++|++|.+.+|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 555555555555566666666654 22222111 22233455555566655553 45555554443 555555555555
Q ss_pred CCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 237 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
..+++.++..+...++.|++|++++|..+++.++..+...+++++.|.+
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 4455555555555555555555555555555545444444555544443
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=5.7e-14 Score=135.05 Aligned_cols=137 Identities=31% Similarity=0.480 Sum_probs=72.0
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChh--hHHHHHhcCCccceEeecCCCCCchhHHHHhhc
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHV--GLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (468)
++.|+.+.+.+|..+.+.....+...++.|+.|+++++ ...... ....+...+++|+.++++++..+++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555555555444444444566666665541 111111 122234444555555555554444444444443
Q ss_pred -CCCCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 302 -FPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 302 -~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+++|+.|.+.+|. +++.++..++..++.|++|++++|..+++.++..+..+|++|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5566666655555 56666666666666666666666666655555555555555555443
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=9.6e-13 Score=111.12 Aligned_cols=201 Identities=21% Similarity=0.310 Sum_probs=128.3
Q ss_pred CCCCCEEEccCCcccC--hhhHHHHHhcCCccceEeecCCCCCchhHH-------------HHhhcCCCCCeeEecCCcC
Q 012207 251 CKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSADLS-------------KCLHNFPMLQSIKFEDCPV 315 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~ 315 (468)
+|+|++++++++..-. ..++..++.++..|++|.+.+| .+....- ...+.-+.|+.+....|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 5666666666654211 1234455566666666666666 2322211 1233456888888888877
Q ss_pred ChhHHHHH---HHhCCCCCeEecccCCCCCHHHHH---HHHHhCCCCCeEecCCCCCCCHHHHHHH---HhcCCcCCeEE
Q 012207 316 ARSGIKAI---GNWHGSLKELSLSKCSGVTDEELS---FVVQSHKELRKLDITCCRKITYASINSI---TKTCTSLTSLR 386 (468)
Q Consensus 316 ~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~ 386 (468)
.+.+...+ .+..+.|+.+.+.. +.+...++. .-+..||+|+.|++.+|. ++..+-..+ ...++.|++|.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeec
Confidence 66554443 34567888888887 455544442 335577899999998876 444443333 33577888888
Q ss_pred ccCCCCCCHHHHH----HHHhcCCCCCEEEccCCCCChhhHHhcc----cCCCCCEEeeCCCCcc--CHHHHHHHHhcCc
Q 012207 387 MECCKLVSWEAFV----LIGQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI--TDEGLKHVGSTCS 456 (468)
Q Consensus 387 l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~ 456 (468)
++.|. +...+.. .+.+..|+|+.|.+.+|.++..+...+. ..|.|+.|+|++| .+ .++++..+...++
T Consensus 248 l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 248 LGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFD 325 (382)
T ss_pred ccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcc
Confidence 88886 4444433 3444678899999999888877655543 4678889999998 77 6667777766553
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=8.6e-15 Score=138.24 Aligned_cols=223 Identities=19% Similarity=0.213 Sum_probs=106.1
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.+|++++++. +.+.... +.+.. +++|+.+.+..+.. . .+..-....++|+.|...++. -..++..+..+..|
T Consensus 241 ~nl~~~dis~-n~l~~lp-~wi~~-~~nle~l~~n~N~l-~--~lp~ri~~~~~L~~l~~~~ne--l~yip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP-EWIGA-CANLEALNANHNRL-V--ALPLRISRITSLVSLSAAYNE--LEYIPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecch-hhhhcch-HHHHh-cccceEecccchhH-H--hhHHHHhhhhhHHHHHhhhhh--hhhCCCccccccee
Confidence 4666666666 3333333 44444 77777777766542 1 111112222344444433331 11223333445566
Q ss_pred CeeEecCCcCChhHH----------HHHH--------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 306 QSIKFEDCPVARSGI----------KAIG--------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~----------~~l~--------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
++|++..+.+.+... ..+. ...+.|+.|.+.+ +.+++..++. +.++++|+.|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~-l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPV-LVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhh-hccccceeeeee
Confidence 666666554332110 0000 0122344445544 3455544333 345667777777
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
++|. +...+.. ...+++.|++|.++| +.++.-. ..++ .|+.|++|...+|++...+ .+.+++.|+.++++.|
T Consensus 391 syNr-L~~fpas-~~~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N- 462 (1081)
T KOG0618|consen 391 SYNR-LNSFPAS-KLRKLEELEELNLSG-NKLTTLP-DTVA-NLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCN- 462 (1081)
T ss_pred cccc-cccCCHH-HHhchHHhHHHhccc-chhhhhh-HHHH-hhhhhHHHhhcCCceeech--hhhhcCcceEEecccc-
Confidence 7763 2211111 123566777777776 3343222 1222 5566666666666555432 4555666666666666
Q ss_pred ccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 442 NITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 442 ~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++...+.... -.|+|+.|+++||.
T Consensus 463 ~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhC-CCcccceeeccCCc
Confidence 66554444332 22566666666664
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=3e-12 Score=108.14 Aligned_cols=190 Identities=18% Similarity=0.251 Sum_probs=134.1
Q ss_pred HhcCCccceEeecCCCCCc---hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH------------hCCCCCeEecccC
Q 012207 274 IKGADYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN------------WHGSLKELSLSKC 338 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------------~~~~L~~L~l~~~ 338 (468)
+..+|.|+.++++.+..-. ..+-..+.++..|++|.+.+|.+...+-..++. .-++|+.+...++
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4567899999999873322 233445668889999999999877665444332 3468888888773
Q ss_pred CCCCHHH---HHHHHHhCCCCCeEecCCCCCCCHHHH---HHHHhcCCcCCeEEccCCCCCCHHHHHHHHh---cCCCCC
Q 012207 339 SGVTDEE---LSFVVQSHKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQYLE 409 (468)
Q Consensus 339 ~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~ 409 (468)
.+.+.+ +...++.+|.|+.+.+..+. +...++ ..-+.+|+.|+.|++.. +.++..+-..+++ .+++|+
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhe
Confidence 443333 44556677899999998876 443333 33345789999999987 4466655444443 567889
Q ss_pred EEEccCCCCChhhHHhcc-----cCCCCCEEeeCCCCccCHHHHHHHH---hcCcccCeeecCCCC
Q 012207 410 ELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYRFS 467 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~c~ 467 (468)
.|++++|.+...+...+. ..|+|+.|.+.+| .|+..+...+. ...|.|+.|+|.+|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999999888777654 3789999999999 88776554333 357899999999985
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=4.4e-15 Score=127.19 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=72.3
Q ss_pred HHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc
Q 012207 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (468)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (468)
.+..+++|..|++++|. +.+.+.. .+.+..|+.|+++... + ..++.+......|+.+-.++|++.......+..
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e--~~~lv~Lq~LnlS~Nr-F--r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEE--MGSLVRLQTLNLSFNR-F--RMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchh--hhhhhhhheecccccc-c--ccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 34456777777777654 3332222 2345667777777632 1 112222212233555555567777777777888
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCCC
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFSS 468 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (468)
+.+|.+|++.+| .+. .++...++|.+|++|++.||++
T Consensus 504 m~nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCCC-chh--hCChhhccccceeEEEecCCcc
Confidence 999999999999 655 4778888999999999999985
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.8e-13 Score=118.83 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=129.0
Q ss_pred cCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCC
Q 012207 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (468)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (468)
++.+|+++.+.++ .+...+.......|++++.|+++.+-......+..++..+|+|+.|.++.+..........-..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5788888888874 344444435566689999999998776666677788888888888888876433221111122556
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
.|+.|.+++|.++......+...+|+|+.|++..+..+..... -...+..|++|+|+++..++..... ....+|.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGY-KVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccccccccc-ccccccchh
Confidence 7777778887777777777766777888877776432221111 1122356777777777654433222 223677777
Q ss_pred eEEccCCCCCCHHH-----HHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCC
Q 012207 384 SLRMECCKLVSWEA-----FVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 384 ~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 440 (468)
.|+++.|. +++-. .......+++|+.|++..|.+.+ ..+..+..+++|+.|.+..+
T Consensus 275 ~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 275 QLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 77776643 33211 11122256777777777776644 12233444566666666555
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=3.8e-14 Score=134.03 Aligned_cols=80 Identities=30% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCC
Q 012207 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (468)
Q Consensus 72 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 151 (468)
.|+.|++++.. ..+... ......+|+.|.++.+. +. . ++.-...+.+|+.+.|..+. .... ...+..+.+
T Consensus 46 ~L~~l~lsnn~-~~~fp~----~it~l~~L~~ln~s~n~-i~-~-vp~s~~~~~~l~~lnL~~n~-l~~l-P~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ-ISSFPI----QITLLSHLRQLNLSRNY-IR-S-VPSSCSNMRNLQYLNLKNNR-LQSL-PASISELKN 115 (1081)
T ss_pred eeEEeeccccc-cccCCc----hhhhHHHHhhcccchhh-Hh-h-Cchhhhhhhcchhheeccch-hhcC-chhHHhhhc
Confidence 37788877653 222111 11234667777776542 11 1 11222267777888877652 2222 245667777
Q ss_pred CCeEeccCCc
Q 012207 152 LERLWLARCK 161 (468)
Q Consensus 152 L~~L~l~~~~ 161 (468)
|++|+++++.
T Consensus 116 l~~LdlS~N~ 125 (1081)
T KOG0618|consen 116 LQYLDLSFNH 125 (1081)
T ss_pred ccccccchhc
Confidence 8888887754
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.4e-13 Score=115.42 Aligned_cols=215 Identities=20% Similarity=0.193 Sum_probs=147.2
Q ss_pred hCCCccEeeecccCCCCCCcc-ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
+..+|+.+.+.++.+...... ....+++++.|+++.+-.-.-..+..++..+|+|+.|+++.+......+ ......++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhh
Confidence 667888889988866654442 3446999999999984333334555677779999999999876332211 11122568
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc-CChh-HHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARS-GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+|+.|.++.|..--.++...+..+|+|+.|.+.+|. +... .... .+..|++|+|++++.++...+ .....+|.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQG-YKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccc-cccccccch
Confidence 899999999965555666667799999999999984 2221 2222 346899999999766654433 335578999
Q ss_pred CeEecCCCCCCCHHHHH-----HHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh
Q 012207 357 RKLDITCCRKITYASIN-----SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (468)
+-|+++.|. +++.... .....+++|+.|++...+-.....+..+. .+++|+.|.+..|.++.+
T Consensus 274 ~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 274 NQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccccccc
Confidence 999998775 4443322 22346899999999985433344555555 778899998888766543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-12 Score=111.40 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=74.5
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.-..+.+..+ .++..+... +...++|+.|+++.|.|+......+..+++|..|.+.+++.|.+..-..+.. +..++.
T Consensus 68 ~tveirLdqN-~I~~iP~~a-F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGA-FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChhh-ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHHH
Confidence 4556666654 444444333 3467788888888887777777777777777777777766777665555554 666666
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHH-HhhcCCCCCeeEecCCc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK-CLHNFPMLQSIKFEDCP 314 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 314 (468)
|.+.-+.. .. ..+..+..++++..|.+..+. ...+.. .+..+..++.+.+..++
T Consensus 145 LllNan~i-~C-ir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNANHI-NC-IRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChhhh-cc-hhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcCc
Confidence 66554331 11 122334455666666554431 111111 34445566666665544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=3.7e-12 Score=109.34 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccC
Q 012207 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (468)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (468)
++.+|+|++|++++|. ++...-..+ .....+++|.+.. +.+....- .+++.+..|+.|++.+|+|+...+..+...
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~-N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTR-NKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCc-chHHHHHH-HhhhccccceeeeecCCeeEEEeccccccc
Confidence 5667777777777664 443332222 3556677777765 33332222 233367778888888888777776777777
Q ss_pred CCCCEEeeCCCCcc
Q 012207 430 SKLSSLKLGICSNI 443 (468)
Q Consensus 430 ~~L~~L~l~~~~~l 443 (468)
..|.+|++-.|+--
T Consensus 346 ~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFN 359 (498)
T ss_pred ceeeeeehccCccc
Confidence 77777777665433
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=2.3e-10 Score=111.34 Aligned_cols=263 Identities=17% Similarity=0.129 Sum_probs=124.4
Q ss_pred CCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCcc
Q 012207 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (468)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (468)
+-..|+++++ .++..+ ..+. ++|+.|.+..+. ++. +....++|++|+++++ .++..+. ..++|+
T Consensus 202 ~~~~LdLs~~-~LtsLP-~~l~--~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~ 265 (788)
T PRK15387 202 GNAVLNVGES-GLTTLP-DCLP--AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGN-QLTSLPV-----LPPGLL 265 (788)
T ss_pred CCcEEEcCCC-CCCcCC-cchh--cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCC-ccCcccC-----cccccc
Confidence 3455565555 333222 1121 356666665532 221 1112456666666654 3332211 234566
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
.|++.+|.+.. +.. ...+|+.|+++++ .+.... ...++|+.|+++++.... +. ....+|+.|.+
T Consensus 266 ~L~Ls~N~L~~--Lp~--lp~~L~~L~Ls~N-~Lt~LP-----~~p~~L~~LdLS~N~L~~---Lp---~lp~~L~~L~L 329 (788)
T PRK15387 266 ELSIFSNPLTH--LPA--LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDNQLAS---LP---ALPSELCKLWA 329 (788)
T ss_pred eeeccCCchhh--hhh--chhhcCEEECcCC-cccccc-----ccccccceeECCCCcccc---CC---CCccccccccc
Confidence 66666554431 111 1245556666553 333211 113556666666654211 00 11234555555
Q ss_pred cCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC
Q 012207 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (468)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 365 (468)
+++. +.. ++. -.++|+.|++++|.+.... . ..++|+.|+++++ .++. ++. ..++|+.|++++|.
T Consensus 330 s~N~-L~~-LP~---lp~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdLs~N~ 393 (788)
T PRK15387 330 YNNQ-LTS-LPT---LPSGLQELSVSDNQLASLP--T---LPSELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNR 393 (788)
T ss_pred ccCc-ccc-ccc---cccccceEecCCCccCCCC--C---CCcccceehhhcc-cccc--Ccc---cccccceEEecCCc
Confidence 5542 111 110 1135677777776655311 1 1245666666652 3331 222 12467777777664
Q ss_pred CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 366 KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
++.. . ...++|+.|+++++. ++. ++. ...+|+.|++++|.++.. +..+.++++|+.|++++| .++.
T Consensus 394 -Lt~L--P---~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 394 -LTSL--P---VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred -ccCC--C---CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCc
Confidence 3311 1 123567777777643 331 211 124566777777777643 344566777777777777 6665
Q ss_pred HHHHH
Q 012207 446 EGLKH 450 (468)
Q Consensus 446 ~~~~~ 450 (468)
..+..
T Consensus 460 ~~~~~ 464 (788)
T PRK15387 460 RTLQA 464 (788)
T ss_pred hHHHH
Confidence 44443
No 27
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.04 E-value=7.1e-12 Score=107.89 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++|..|++++ +.+.+ ++.-.+....|+.|++++|. +. .++........++.+-.+. ..+.......+. ++
T Consensus 433 ~l~kLt~L~L~N-N~Ln~--LP~e~~~lv~Lq~LnlS~Nr-Fr--~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~-nm 504 (565)
T KOG0472|consen 433 QLQKLTFLDLSN-NLLND--LPEEMGSLVRLQTLNLSFNR-FR--MLPECLYELQTLETLLASN-NQIGSVDPSGLK-NM 504 (565)
T ss_pred hhhcceeeeccc-chhhh--cchhhhhhhhhheecccccc-cc--cchHHHhhHHHHHHHHhcc-ccccccChHHhh-hh
Confidence 678999999987 34432 44445566779999999874 22 1222322334455554443 334332233333 77
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
.+|..||+.+|.+...+ ..++++.+|++|.++|| .+.
T Consensus 505 ~nL~tLDL~nNdlq~IP-p~LgnmtnL~hLeL~gN-pfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIP-PILGNMTNLRHLELDGN-PFR 541 (565)
T ss_pred hhcceeccCCCchhhCC-hhhccccceeEEEecCC-ccC
Confidence 89999999999887754 67889999999999999 554
No 28
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.04 E-value=1.1e-10 Score=70.93 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=33.3
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 12 ~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
|..||+||+.+||+ |++ ..|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 996 999999999999999998654
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.03 E-value=1.7e-10 Score=112.32 Aligned_cols=235 Identities=20% Similarity=0.082 Sum_probs=121.5
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|+.|.+.++ .++..+ ...++|++|++++|.++.. .. ..++|++|++.++ .+.. +.....+|+
T Consensus 222 ~~L~~L~L~~N-~Lt~LP-----~lp~~Lk~LdLs~N~LtsL--P~--lp~sL~~L~Ls~N-~L~~-----Lp~lp~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLP-----ALPPELRTLEVSGNQLTSL--PV--LPPGLLELSIFSN-PLTH-----LPALPSGLC 285 (788)
T ss_pred cCCCEEEccCC-cCCCCC-----CCCCCCcEEEecCCccCcc--cC--cccccceeeccCC-chhh-----hhhchhhcC
Confidence 36677777664 343322 1346777777777755521 11 1356777777663 2322 112235677
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|++.++.. .. +....++|+.|+++++. +.. ++. ...+|+.|++.+|.++... . ...+|+.|++
T Consensus 286 ~L~Ls~N~L-t~-----LP~~p~~L~~LdLS~N~-L~~-Lp~---lp~~L~~L~Ls~N~L~~LP--~---lp~~Lq~LdL 349 (788)
T PRK15387 286 KLWIFGNQL-TS-----LPVLPPGLQELSVSDNQ-LAS-LPA---LPSELCKLWAYNNQLTSLP--T---LPSGLQELSV 349 (788)
T ss_pred EEECcCCcc-cc-----ccccccccceeECCCCc-ccc-CCC---CcccccccccccCcccccc--c---cccccceEec
Confidence 777766542 21 11223567777776652 221 111 1235666777776654311 1 1246777777
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+++ .++. ++. ..++|+.|++++|. +.. +.. ...+|+.|+++++. ++. ++. ..++|+.|++++
T Consensus 350 S~N-~Ls~--LP~---lp~~L~~L~Ls~N~-L~~--LP~---l~~~L~~LdLs~N~-Lt~--LP~---l~s~L~~LdLS~ 411 (788)
T PRK15387 350 SDN-QLAS--LPT---LPSELYKLWAYNNR-LTS--LPA---LPSGLKELIVSGNR-LTS--LPV---LPSELKELMVSG 411 (788)
T ss_pred CCC-ccCC--CCC---CCcccceehhhccc-ccc--Ccc---cccccceEEecCCc-ccC--CCC---cccCCCEEEccC
Confidence 763 4432 221 12466667766654 331 111 23467777776643 331 111 235677777777
Q ss_pred CCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 416 NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|.++... . ...+|+.|++++| +++. ++.-...+++|+.|++++|+
T Consensus 412 N~LssIP-~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NRLTSLP-M---LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CcCCCCC-c---chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC
Confidence 7665432 1 1235667777777 6663 44334467777777777775
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.94 E-value=1.8e-09 Score=104.75 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=72.3
Q ss_pred CCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 304 MLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 304 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
+|++|+++|.. +....+..++..+|.|++|.+++. .+..+.+..+..++|+|..|+|+++. +++. ...+++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccH
Confidence 44444444432 333444555555555555555552 33333355555555566666655543 3322 222345555
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh---hHHhc---ccCCCCCEEeeCCCCccCHHHHHHHHhcCc
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE---GLKSI---SRCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (468)
+.|.+.+-+--+...+..++ ++++|+.||++.....+. ....+ ..+|+|+.|+.++. .++...++.+...-|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 55555543322223444444 555666666655311111 11111 13556666666655 555555555555555
Q ss_pred ccCeee
Q 012207 457 MLKELD 462 (468)
Q Consensus 457 ~L~~L~ 462 (468)
+|+.+.
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 555544
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.87 E-value=9.6e-09 Score=99.80 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCC
Q 012207 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (468)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (468)
.+|++|++++...+.......+...+|+|++|.+.+.....+++.....++|+|.+|+++++++++- ..+. ++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 4555555555443333333344444555555555554333444444444555555555555544432 2222 344555
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHH-HHHHH---hcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYAS-INSIT---KTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
.|.+.+-...+...+..++ .+.+|+.||+|.-....+.. +.... ..+|+|+.|+.++ ..+....+..+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 5544443222223333333 34555555555433222221 11000 1245555555554 33444444444433444
Q ss_pred CCEEE
Q 012207 408 LEELD 412 (468)
Q Consensus 408 L~~L~ 412 (468)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44433
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=4.6e-09 Score=87.26 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=61.5
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCC-HHHHHHHHhcCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS-WEAFVLIGQQCQ 406 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~ 406 (468)
+.+++|+.-+|...-+.....+.+.+|++..+.+..|+ +.+.........+|.+..|.++. .++. ..++.++. .+|
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln-~f~ 249 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALN-GFP 249 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHc-CCc
Confidence 45555655555443344444555566777777777666 44444444444567777777766 3343 34555555 777
Q ss_pred CCCEEEccCCCCChhhHHh------cccCCCCCEEe
Q 012207 407 YLEELDITENEVNDEGLKS------ISRCSKLSSLK 436 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~------l~~~~~L~~L~ 436 (468)
.|..|.+.++.+.+..-.. ++++++++.|+
T Consensus 250 ~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7888877777666532111 34567777665
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5e-09 Score=87.06 Aligned_cols=231 Identities=15% Similarity=0.122 Sum_probs=146.5
Q ss_pred CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCC
Q 012207 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (468)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (468)
.++-+.+.++..-.......+...+..++.+++.++.......+..+...+|.|+.|.++.+.. ...+-..-....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC-CCccccCcccccceE
Confidence 3344445554332333344556667788888888776555556677778888888888877632 222211112445888
Q ss_pred eeEecCCcCChhHHHHHHHhCCCCCeEecccCC----CCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS----GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
.|-+.|+.+.-.........+|.+++|+++.++ +++++.... ..|.+++|++..|..........+.+.+|++
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 888888887766666666677888888887631 122222211 2356778888777655555566667778999
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCCCccCHH----HHHHHHhcCcc
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGICSNITDE----GLKHVGSTCSM 457 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~~~ 457 (468)
..+.+..|+--+ .....-.+.+|.+..|+++.+++.+ ..+.++.+++.|..|.+.++|-.... ....+...+++
T Consensus 202 ~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 202 NSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred hheeeecCcccc-hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 999998877333 3333333477888888998888876 45566888999999999988443321 11123356667
Q ss_pred cCeee
Q 012207 458 LKELD 462 (468)
Q Consensus 458 L~~L~ 462 (468)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 76664
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=1.4e-07 Score=77.70 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHH------------HhCCCCCeEecccCCCC--CHHHHHHHHHhCCCCCeEecC
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIG------------NWHGSLKELSLSKCSGV--TDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~ 362 (468)
..+.+...|.+|.+++|.+...+-..++ ..-|.|+.+....+... +..-+...++.-.+|+.+.+.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~ 193 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ 193 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence 3444555666666666644322211111 13466777766553211 112223333334567777777
Q ss_pred CCCCCCHHHHHHHH----hcCCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChhhHHhcc------cC
Q 012207 363 CCRKITYASINSIT----KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEGLKSIS------RC 429 (468)
Q Consensus 363 ~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~------~~ 429 (468)
+|. |...++..++ ..+.+|+.|++.. +.++..+-..++ ..++.|+.|.+.+|-++..+...+. ..
T Consensus 194 qNg-Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~ 271 (388)
T COG5238 194 QNG-IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFV 271 (388)
T ss_pred ecC-cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcC
Confidence 665 5544433322 2467777777765 334444333322 2445667777777766655544432 25
Q ss_pred CCCCEEeeCCCCccCH-----HHHHHHH-hcCcccCeeecCCCC
Q 012207 430 SKLSSLKLGICSNITD-----EGLKHVG-STCSMLKELDLYRFS 467 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~-----~~~~~~~-~~~~~L~~L~l~~c~ 467 (468)
|+|..|...+| .... ..+..+. ...|-|..|.+.||.
T Consensus 272 p~l~~L~~~Yn-e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 272 PNLMPLPGDYN-ERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred CCccccccchh-hhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 67777777666 3221 1222222 356666666666654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=9e-09 Score=81.67 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (468)
+.+|+.|++++|. ++.. ..+ ..+++|+.|++++ +.++..+- .+...+|+|++|++++|.|.+. .+..++.+|+
T Consensus 41 l~~L~~L~Ls~N~-I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL--EGL-PGLPRLKTLDLSN-NRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCC-Cccc--cCc-cChhhhhhcccCC-CCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 3455555555554 2211 111 2355666666655 33433211 1222456666666666655442 2234555666
Q ss_pred CCEEeeCCCCccCHHHHH-HHHhcCcccCeee
Q 012207 432 LSSLKLGICSNITDEGLK-HVGSTCSMLKELD 462 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~ 462 (468)
|+.|++.+||--...... .+...+|+|+.|+
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666666332222222 2334566666665
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.68 E-value=6e-08 Score=95.35 Aligned_cols=232 Identities=15% Similarity=0.122 Sum_probs=114.7
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|+.|+++++ .++..+.. .+++|+.|++++|.+.. ....+ .++|+.|++++|. +.... ..+ ..+|+
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~-L~~LP-~~l---~s~L~ 265 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQLTS-IPATL--PDTIQEMELSINR-ITELP-ERL---PSALQ 265 (754)
T ss_pred cCCcEEEecCC-CCCcCChh----hccCCCEEECCCCcccc-CChhh--hccccEEECcCCc-cCcCC-hhH---hCCCC
Confidence 46777777765 34433221 22567777777775542 11112 2467777777743 33221 112 24677
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|+++++. +.. +.. .-.++|+.|+++++. +.. ++..+ .++|+.|++.+|.+.... .. ..++|+.|++
T Consensus 266 ~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt~-LP~~l--p~sL~~L~Ls~N~Lt~LP-~~---l~~sL~~L~L 332 (754)
T PRK15370 266 SLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IRT-LPAHL--PSGITHLNVQSNSLTALP-ET---LPPGLKTLEA 332 (754)
T ss_pred EEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-ccc-Ccccc--hhhHHHHHhcCCccccCC-cc---ccccceeccc
Confidence 77777654 221 111 012467777776652 221 11111 135666777766655321 11 1256777777
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
++| .++. ++..+ .++|+.|++++|. ++.. ... -.++|+.|++++|. ++.. ...+. +.|+.|++++
T Consensus 333 s~N-~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~L--P~~--lp~~L~~LdLs~N~-Lt~L-P~~l~---~sL~~LdLs~ 397 (754)
T PRK15370 333 GEN-ALTS--LPASL--PPELQVLDVSKNQ-ITVL--PET--LPPTITTLDVSRNA-LTNL-PENLP---AALQIMQASR 397 (754)
T ss_pred cCC-cccc--CChhh--cCcccEEECCCCC-CCcC--Chh--hcCCcCEEECCCCc-CCCC-CHhHH---HHHHHHhhcc
Confidence 764 3332 22211 2577777777764 3321 111 12567777777754 3311 11121 2466777777
Q ss_pred CCCChhh---HHhcccCCCCCEEeeCCCCccCHHHHH
Q 012207 416 NEVNDEG---LKSISRCSKLSSLKLGICSNITDEGLK 449 (468)
Q Consensus 416 ~~~~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~ 449 (468)
|.++... ......++++..|++.+| .++...+.
T Consensus 398 N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~ 433 (754)
T PRK15370 398 NNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQ 433 (754)
T ss_pred CCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHH
Confidence 7665421 112234567777777777 56544444
No 37
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.65 E-value=1.1e-08 Score=62.79 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=33.8
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHR 52 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~ 52 (468)
+|.+||+|++.+||+ +++ ..|+.+++.|||+|++++....
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCCC
Confidence 578999999999999 997 9999999999999999987654
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=6.9e-09 Score=82.32 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (468)
+..+++|++.++. ++. +..+...+.+|+.|++++|. ++. +..+. .+++|+.|++++|.+++.+......+|+|
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQ-ITK--LEGLP-GLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCcc-ChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3467888888875 442 23333357899999999965 442 22233 67999999999999988643222368999
Q ss_pred CEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 433 SSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+.|.+++| +|.+..--.....+|+|+.|++.+||
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 99999999 88763222233479999999999997
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=2.4e-08 Score=83.27 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=66.4
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
..|+++++++ +.++. +.....-.|.++.|++++|....-.. .+.+++|+.|+++++. ++ .+..+...+-+
T Consensus 284 q~LtelDLS~-N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQ--IDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL-LA--ECVGWHLKLGN 353 (490)
T ss_pred hhhhhccccc-cchhh--hhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccch-hH--hhhhhHhhhcC
Confidence 3566666666 33332 23333345666777776665322222 1245667777776622 22 22223334566
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.+.|.+++|.+.+ +..+.++-+|..|++.+| +|..-.-..-.+++|-|+.+.+.+||
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 6666666665543 244455566666666666 55542222223356666666666665
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.53 E-value=3.2e-07 Score=90.32 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|.+.+|.++.. +..+ +++|+.|+++++ .++. ++..+ .++|+.|++++|. ++.... .+ .+.|
T Consensus 325 ~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N~-Lt~LP~-~l---~~sL 390 (754)
T PRK15370 325 PGLKTLEAGENALTSL-PASL---PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRNA-LTNLPE-NL---PAAL 390 (754)
T ss_pred ccceeccccCCccccC-Chhh---cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCCc-CCCCCH-hH---HHHH
Confidence 4566666666554421 1111 245666666653 2321 11111 2456666666554 221110 11 1245
Q ss_pred CeEEccCCCCCCH--HHHHHHHhcCCCCCEEEccCCCCChh
Q 012207 383 TSLRMECCKLVSW--EAFVLIGQQCQYLEELDITENEVNDE 421 (468)
Q Consensus 383 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (468)
+.|+++++. ++. ..+..+...++++..|++.+|.++..
T Consensus 391 ~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 391 QIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred HHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHH
Confidence 555555533 221 12233333445566666666655543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=3.5e-08 Score=98.54 Aligned_cols=131 Identities=23% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
+++|++|-+.++...-......++..+|.|+.|++++|.-....+..++.+-+|++|++++ ..+.. .+..+.. +..|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~-LP~~l~~-Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH-LPSGLGN-LKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc-cchHHHH-HHhh
Confidence 4556666555532101111122233566666666666544444555566666666666666 33331 1223333 5566
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCC-CCchhHHHHhhcCCCCCeeEe
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF-WVSADLSKCLHNFPMLQSIKF 310 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l 310 (468)
.+|++........ +..+...+++|++|.+.... ..+......+.++.+|+.+.+
T Consensus 621 ~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 621 IYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred heecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 6666654432211 12333445666666665432 222223333444444444444
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=3.6e-08 Score=82.21 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCc
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (468)
...|+.+++++|.++.. ..-.+-.|.++.|+++. +.+...+ -+..+++|+.|++++|....-.+ +-..+.+
T Consensus 283 Wq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~-N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~G---wh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI--DESVKLAPKLRRLILSQ-NRIRTVQ---NLAELPQLQLLDLSGNLLAECVG---WHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhhh--hhhhhhccceeEEeccc-cceeeeh---hhhhcccceEeecccchhHhhhh---hHhhhcC
Confidence 34677777777766521 11112347888888887 3444322 14567888888888876322222 2235678
Q ss_pred CCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCCC
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 441 (468)
++.|.+.+ +.+. .+..+. .+-+|..||+++|+|.. +.+..++++|.|+.+.+.+||
T Consensus 354 IKtL~La~-N~iE--~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQ-NKIE--TLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhh-hhHh--hhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 88888877 3232 222222 34468888888887765 344567788888888888884
No 43
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.47 E-value=2.1e-07 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.4
Q ss_pred CcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 15 LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
||+|++..||+ +++ ..|+.+++.|||+|+.++...
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999 997 999999999999999987654
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=5.6e-06 Score=68.47 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred hCCCccEeeecccCCCCCCcccc----ccCCCCCeeeecCCCCCChHHHHHHH------------hcCCCCCEEEccCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPV----VKLQYLEDLVLEGCHGIDDDGLASVE------------YSCKSLKALNLSKCQ 263 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~ 263 (468)
.||+|+..++++|.+....+..+ ++-..|++|.+++| .+....-..++ ..-|.|+......+.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 66666666666665554444332 34556666666653 22222111111 123666666665544
Q ss_pred ccCh--hhHHHHHhcCCccceEeecCCCCCchh-----HHHHhhcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeE
Q 012207 264 NISH--VGLSSLIKGADYLQQLILAYSFWVSAD-----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKEL 333 (468)
Q Consensus 264 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L 333 (468)
.... .-....+..-.+|+.+.+.++ .+... ....+..+.+|+.|++.+|.++-.+...++. ..+.|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 2221 112222333345555555554 22222 1222334556666666666655444444332 12345666
Q ss_pred ecccCCCCCHHHHHHHHHh-----CCCCCeEecCCC
Q 012207 334 SLSKCSGVTDEELSFVVQS-----HKELRKLDITCC 364 (468)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~~-----~~~L~~L~l~~~ 364 (468)
.+..| -++..+...++.. .|+|..|...++
T Consensus 248 ~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 248 RLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 66555 2333333332222 255555555544
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.41 E-value=1.4e-07 Score=94.36 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=8.8
Q ss_pred CCcCCeEEccCCCCCC
Q 012207 379 CTSLTSLRMECCKLVS 394 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~ 394 (468)
.|+|+.|.+..|..+.
T Consensus 769 ~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLE 784 (889)
T ss_pred cCcccEEEEecccccc
Confidence 3566666666555443
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.41 E-value=1.5e-09 Score=82.49 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=65.9
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
.+++.|.++++.. ..++..++.+.+|+.|++.++.+.+- +..++ .+++|+.|+++-+ .+. .++.-++++|.|+
T Consensus 33 s~ITrLtLSHNKl--~~vppnia~l~nlevln~~nnqie~l-p~~is-sl~klr~lnvgmn-rl~--~lprgfgs~p~le 105 (264)
T KOG0617|consen 33 SNITRLTLSHNKL--TVVPPNIAELKNLEVLNLSNNQIEEL-PTSIS-SLPKLRILNVGMN-RLN--ILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhcccCce--eecCCcHHHhhhhhhhhcccchhhhc-Chhhh-hchhhhheecchh-hhh--cCccccCCCchhh
Confidence 3455555555421 12333445555666666666554322 22222 4455565555431 111 1222344455566
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
.|++.++. +....+..-+..+..|+.|.++..+ .. -....+. .+++|+.|.+..|.+-.. +..++.+..|++|++
T Consensus 106 vldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe-~lp~dvg-~lt~lqil~lrdndll~l-pkeig~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FE-ILPPDVG-KLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHI 180 (264)
T ss_pred hhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cc-cCChhhh-hhcceeEEeeccCchhhC-cHHHHHHHHHHHHhc
Confidence 66655543 2222222111123334444443311 10 0011122 455566665555544332 234444555566666
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
.+| +++
T Consensus 181 qgn-rl~ 186 (264)
T KOG0617|consen 181 QGN-RLT 186 (264)
T ss_pred ccc-eee
Confidence 665 444
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=1.1e-07 Score=61.68 Aligned_cols=60 Identities=28% Similarity=0.280 Sum_probs=39.5
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|+|++|++++|.++......+..+++|++|++++| .++..... .+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 46777777777777666566667777777777777 66642222 33467777777777765
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1e-07 Score=89.14 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHhhCCCccEeeecccCCCCC-CccccccCCCCCeeeecCCCCCChHHHHHH
Q 012207 196 LVALKCQEIRTLDLSYLPITEK-CLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247 (468)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 247 (468)
.+....++++.|.+-...-.+. .+-.+..+..|++|.+.+|+--...++..+
T Consensus 78 ~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 78 RILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred HHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence 3344556666666655422211 134455677777777777654443444333
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.2e-06 Score=69.02 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=60.7
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
.++.++-+++.+..+++..+. .++.++.|.+.+|..+.+.++..+..-.|+|+.|+|++|+.|++.++..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 355555566666667777665 667777777777777777777766666677777777777777777776654 567777
Q ss_pred eEEccCCCCCC
Q 012207 384 SLRMECCKLVS 394 (468)
Q Consensus 384 ~L~l~~~~~~~ 394 (468)
.|.+.+-+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 77776644443
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=3.1e-06 Score=66.85 Aligned_cols=84 Identities=14% Similarity=0.299 Sum_probs=55.2
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCC
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (468)
.++.++-++ ..+..+|+..+ ..++.++.|.+.+|..+.+..+..+.+-.++|+.|+|++|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCC-chHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 345555555 35555565543 3567777777777777777777766666677777777777777777776666 66667
Q ss_pred CEEEccC
Q 012207 409 EELDITE 415 (468)
Q Consensus 409 ~~L~l~~ 415 (468)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7766655
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=9.2e-07 Score=57.34 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=46.2
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|+|++|++++| .++.-....+. .+++|++|++++|.++......+..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56788888875 35433222233 7899999999999998888788889999999999998
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.00 E-value=5.9e-08 Score=74.04 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=16.0
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeec
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLE 234 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 234 (468)
...+|+.|++.++.+. +.+..++++++|+.|++.
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVG 87 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecc
Confidence 3344555555554443 233444445555555444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=4.7e-06 Score=78.42 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=75.1
Q ss_pred HHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh-cCCCCCEEEccCCCCChhhHHhcc
Q 012207 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-QCQYLEELDITENEVNDEGLKSIS 427 (468)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~ 427 (468)
.++-+|.|+.|+++.|. +++.. ....|+.|++|+|+++. +.. +..+.. .|. |+.|.+++|.++. +..+.
T Consensus 182 SLqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHh--hhhHH
Confidence 34456889999999886 44332 33578999999998733 321 222211 333 9999999998876 35667
Q ss_pred cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 428 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.+|+.|++++| -+.+.+--.....+..|+.|.+.|||
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8899999999999 66653333334468899999999997
No 54
>PLN03150 hypothetical protein; Provisional
Probab=97.64 E-value=9.1e-05 Score=72.75 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEE
Q 012207 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (468)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (468)
++.|+++++. +... +......+++|+.|+++++. +.......+. .+++|+.|++++|.++...+..++++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNS-IRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCc-ccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5556666554 2211 11122356667777776643 3322112232 56667777777776666555666666677777
Q ss_pred eeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++++| .++......+.....++..+++.+|+
T Consensus 496 ~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 77766 55432222222223345555555543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=9.4e-05 Score=43.69 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=28.2
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
++|++|++++|.+++.. ..++++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence 57888888888888754 24788888999999888 7763
No 56
>PLN03150 hypothetical protein; Provisional
Probab=97.24 E-value=0.00079 Score=66.29 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCe
Q 012207 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 307 (468)
++.|+++++ .+.......+.. +++|+.|+++++.... .+...+..+++|+.|+++++ .+...++..+.++++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISK-LRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHhC-CCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 566777663 333333334554 7888888888765321 12334566777888888776 455566777788888888
Q ss_pred eEecCCcCChhHHHHHHHhCCCCCeEecccC
Q 012207 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (468)
|++++|.+....+..+.....++..+++.++
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCC
Confidence 8888887776655555433345666666654
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.23 E-value=0.00026 Score=66.14 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=113.8
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcC-CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGA-DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
.+.++.|.+.++.... +....... ++|+.|+++.+.. ...+..+..+++|+.|.+..|++.+...... ..++
T Consensus 115 ~~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSN 187 (394)
T ss_pred ccceeEEecCCccccc---Cccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhhhhhhhhh--hhhh
Confidence 5788899888765322 22233334 3899999887622 2333567889999999999998876544431 3578
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (468)
|+.|++++ +.+.+ ++........|++|.++++..+.... ....+.++..+.+.+ ..+.. +......+++++
T Consensus 188 L~~L~ls~-N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~-n~~~~--~~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSG-NKISD--LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSN-NKLED--LPESIGNLSNLE 258 (394)
T ss_pred hhheeccC-Ccccc--CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCC-ceeee--ccchhccccccc
Confidence 99999998 45543 34433344569999998875333221 223566666666554 22222 112222677899
Q ss_pred EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 410 ELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
.|++++|.+++... ++...+++.|+++++ .+.
T Consensus 259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~ 290 (394)
T COG4886 259 TLDLSNNQISSISS--LGSLTNLRELDLSGN-SLS 290 (394)
T ss_pred eecccccccccccc--ccccCccCEEeccCc-ccc
Confidence 99999998888654 777889999999988 444
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.23 E-value=0.00038 Score=65.05 Aligned_cols=199 Identities=22% Similarity=0.265 Sum_probs=123.3
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcC-CCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC-KSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
.+....+.+. .....+...+.++.|.+.+ +.+.+... ..... ++|+.|+++++... . +..-...+++|+.|+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~-n~i~~i~~--~~~~~~~nL~~L~l~~N~i~-~--l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDN-NNITDIPP--LIGLLKSNLKELDLSDNKIE-S--LPSPLRNLPNLKNLD 169 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCC-cccccCcc--ccccchhhcccccccccchh-h--hhhhhhccccccccc
Confidence 4555555432 2233444557888888887 34443322 12214 38999999987632 1 113367789999999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. .+++......+.|+.|.++++.+.+-.... .....|++|.+++...+. .......+.++..+.+.++
T Consensus 170 l~~N~l--~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 170 LSFNDL--SDLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cCCchh--hhhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCccee---cchhhhhcccccccccCCc
Confidence 998732 233333447889999999999876543331 123569999998843232 2333556677777777665
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHh
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (468)
. +.+ +......+++++.|+++++. +++... +. ...+++.|+++++.+.......
T Consensus 243 ~-~~~--~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~-~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 243 K-LED--LPESIGNLSNLETLDLSNNQ-ISSISS--LG-SLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred e-eee--ccchhccccccceecccccc-cccccc--cc-ccCccCEEeccCccccccchhh
Confidence 4 222 12333567889999999844 443332 33 7789999999998776654333
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.14 E-value=0.00045 Score=40.77 Aligned_cols=35 Identities=31% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|++|++++| +|++ ++.....+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC
Confidence 58999999999 9996 55545689999999999996
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00024 Score=59.34 Aligned_cols=102 Identities=23% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCC-CccccccCCC
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK-CLPPVVKLQY 227 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 227 (468)
+.+.++|+..+|. ++|.. +...++.|++|.++-+ .++.... +..|.+|++|.|..|.+.+. .+..+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3456667776654 45533 2333677777777664 2332211 12677777777776655421 2233446677
Q ss_pred CCeeeecCCCCCChHH---HHHHHhcCCCCCEEE
Q 012207 228 LEDLVLEGCHGIDDDG---LASVEYSCKSLKALN 258 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~ 258 (468)
|+.|.+..++.....+ -......+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666544332211 112222366666664
No 61
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.96 E-value=0.00029 Score=66.11 Aligned_cols=178 Identities=21% Similarity=0.296 Sum_probs=108.2
Q ss_pred HHHHHhcCCccceEeecCCCCCchhHHHHhh----cC-CCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCC
Q 012207 270 LSSLIKGADYLQQLILAYSFWVSADLSKCLH----NF-PMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGV 341 (468)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~ 341 (468)
+...+...+.|+.|+++++..- +.....+. .. ..++.|.+..|.++..+...+.. ....++.++++.+. +
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l 184 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG-L 184 (478)
T ss_pred HHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc-c
Confidence 3344556778888888887433 33333322 22 46777888888877766655543 25677777777643 3
Q ss_pred CHHHHHHH---HHh----CCCCCeEecCCCCCCCHHHHHHHH---hcCCc-CCeEEccCCCCCCHHHHHHHHhcC----C
Q 012207 342 TDEELSFV---VQS----HKELRKLDITCCRKITYASINSIT---KTCTS-LTSLRMECCKLVSWEAFVLIGQQC----Q 406 (468)
Q Consensus 342 ~~~~l~~~---~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~----~ 406 (468)
...+...+ ++. ..++++|.+.+|. ++......+. ...+. +.++++.. +.+.+.+...+.+.+ +
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~ 262 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSE 262 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccch
Confidence 33333222 222 3468888888876 4444443332 23444 56677765 556766666555443 3
Q ss_pred CCCEEEccCCCCChhhHHhcc----cCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 407 YLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
.+++++++.|.+++.+...+. .++.++.+.+++| .+.+.+.....
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~ 311 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLL 311 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHH
Confidence 458888888888877666654 4678888888888 66665555443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.86 E-value=0.0019 Score=58.54 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred HhcCCccceEeecCCCCCchhHHHHhhcCC-CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHh
Q 012207 274 IKGADYLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 352 (468)
+..+.++++|++++| .+.. ++ .+| +|++|.+.+|.-....+..+ .++|++|.+++|..+.. -
T Consensus 48 ~~~~~~l~~L~Is~c-~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s--------L 110 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIES-LP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG--------L 110 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcc-cC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc--------c
Confidence 344577778887776 2221 11 233 57777777764322222222 24677777777644431 1
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (468)
.++|+.|.+.++. ... +.. -.++|+.|.+.++........... --++|+.|++++|...... ..+ -.+|
T Consensus 111 P~sLe~L~L~~n~-~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP-~~L--P~SL 179 (426)
T PRK15386 111 PESVRSLEIKGSA-TDS--IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP-EKL--PESL 179 (426)
T ss_pred ccccceEEeCCCC-Ccc--ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCc-ccc--cccC
Confidence 2467777765432 111 111 124666776643221111111100 1156888888776543211 112 1477
Q ss_pred CEEeeCCC
Q 012207 433 SSLKLGIC 440 (468)
Q Consensus 433 ~~L~l~~~ 440 (468)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88887665
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.84 E-value=0.00033 Score=65.70 Aligned_cols=145 Identities=23% Similarity=0.336 Sum_probs=89.2
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHHH-------hCCCCCeEecccCCCCCHHHHHH---HHHhCCC-CCeEecCCCC
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGN-------WHGSLKELSLSKCSGVTDEELSF---VVQSHKE-LRKLDITCCR 365 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~-L~~L~l~~~~ 365 (468)
..+.....++.+++..|.+...+...+.+ ...++++|.+.+| .++...... .+...+. +..|++..|.
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 33444455555555555544333322221 3457888999886 444443333 3344455 6678888765
Q ss_pred CCCHHHHHHHHhcC----CcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCChhhHHhcc----cCCCCCE
Q 012207 366 KITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVNDEGLKSIS----RCSKLSS 434 (468)
Q Consensus 366 ~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~ 434 (468)
+.+.++..+...+ +.++++++..|. +++.+...+ ...++.++.+.++.|.+++.+...+. ....+..
T Consensus 245 -l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 245 -LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred -cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchh
Confidence 7777666555443 566999999965 665554433 33778999999999999987766643 4556677
Q ss_pred EeeCCCCccC
Q 012207 435 LKLGICSNIT 444 (468)
Q Consensus 435 L~l~~~~~l~ 444 (468)
+.+.++...+
T Consensus 323 ~~l~~~~~~~ 332 (478)
T KOG4308|consen 323 LVLGGTGKGT 332 (478)
T ss_pred hhccccCccc
Confidence 7777663444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.83 E-value=0.00087 Score=53.36 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKL 432 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 432 (468)
-+...+++++|.......+ ..+++|..|.+++ +.++.-.- .+...+|+|+.|.+.+|.+.+.+ +..+..||+|
T Consensus 42 d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcccC----CCccccceEEecC-Ccceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 4677788887764333222 3678999999988 55664221 22224589999999998776532 3557789999
Q ss_pred CEEeeCCCCccCHH-HHHH-HHhcCcccCeeecCC
Q 012207 433 SSLKLGICSNITDE-GLKH-VGSTCSMLKELDLYR 465 (468)
Q Consensus 433 ~~L~l~~~~~l~~~-~~~~-~~~~~~~L~~L~l~~ 465 (468)
+.|.+-+| .+++. .... +...+|+|+.|+..+
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 99999999 55542 2222 334789999998754
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00048 Score=57.20 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=17.4
Q ss_pred HHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCC
Q 012207 400 LIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 440 (468)
.+.+.+|+|+++++++|.+.+ ..+..+..+.+|..|++.+|
T Consensus 85 vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 85 VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred ehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 333344555555555554443 11122223444455555555
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.79 E-value=0.0019 Score=33.04 Aligned_cols=24 Identities=50% Similarity=0.920 Sum_probs=18.9
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHH
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
|++|+.|++++|++|+|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888877665
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.79 E-value=0.0027 Score=57.56 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=6.4
Q ss_pred CcCCeEEccCCC
Q 012207 380 TSLTSLRMECCK 391 (468)
Q Consensus 380 ~~L~~L~l~~~~ 391 (468)
++|++|.+++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 355555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00028 Score=58.94 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=76.2
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (468)
+.+.++|+..+|. ++|..+ ...+|.|+.|.|+- ++|+ .+..+. .|++|++|.|..|.|.+. -+..+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi---c~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI---CEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH---HHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3578889998887 776654 35789999999986 4454 233444 889999999999988763 3455778999
Q ss_pred CCEEeeCCCCccCHHHH---HHHHhcCcccCeee
Q 012207 432 LSSLKLGICSNITDEGL---KHVGSTCSMLKELD 462 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~ 462 (468)
|+.|.|..|+.....+- ......+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999877765332 24455799999886
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.71 E-value=0.00078 Score=53.62 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=32.8
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
.+++|..|.+.+|.++.....--.-+|+|+.|.+.+++-..-..+..+.. ||+|++|.+-+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCc
Confidence 45666666666665554332222235666666666633222223334444 6666666666554
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.71 E-value=0.0023 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=12.2
Q ss_pred CcCCeEEccCCCCCCHHHHHHHH
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIG 402 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~ 402 (468)
++|++|++++|..+++.++..+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45555555555555555555443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00094 Score=55.51 Aligned_cols=86 Identities=33% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCC-CCccccccCCCCCeeeecCCCCCC-hHHHHHHHhcCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGID-DDGLASVEYSCK 252 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~ 252 (468)
+|+|+.|.++.+..-...++..++..+|+|+++++++|.+.+ ..+..+..+++|..|++..|.... +..-..++..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 566777777665333334455555567888888888776652 333444456666677666654221 111222333356
Q ss_pred CCCEEEcc
Q 012207 253 SLKALNLS 260 (468)
Q Consensus 253 ~L~~L~l~ 260 (468)
+|+.|+-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 66666544
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.57 E-value=0.0011 Score=49.25 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
..+..++++.|....-............|+..++++ +.+.+.. +.+...+|.++.|++.+|.+.+...+ ++.+|.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANNEISDVPEE-LAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchhhhhhchHH-HhhhHHhh
Confidence 457778888887443333444444566777778876 3233222 23333567889999999999987755 88899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++..| .+.
T Consensus 104 ~lNl~~N-~l~ 113 (177)
T KOG4579|consen 104 SLNLRFN-PLN 113 (177)
T ss_pred hcccccC-ccc
Confidence 9999999 444
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.27 E-value=0.0037 Score=55.97 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHH
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES 49 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~ 49 (468)
.+|+.||+|++..|.. .|+...|+++.+.|||.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhcc
Confidence 4699999999999999 99778999999999999999754
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.17 E-value=0.0025 Score=47.48 Aligned_cols=126 Identities=19% Similarity=0.154 Sum_probs=83.6
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCC
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (468)
.+..++++.|.-..-......+.....|+..++++|. +.+. ...+...+|.++.|++.+ +.+.+-... ++ .+|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHh
Confidence 5667788887543222234444556789999999875 3322 245556788999999988 556654444 55 88999
Q ss_pred CEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCee
Q 012207 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKEL 461 (468)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 461 (468)
+.|+++.|.+.... ..+..+.++-.|+..++ .+.......+....|.|..+
T Consensus 103 r~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN-ARAEIDVDLFYSSLPALIKL 153 (177)
T ss_pred hhcccccCccccch-HHHHHHHhHHHhcCCCC-ccccCcHHHhccccHHHHHh
Confidence 99999999888764 45555788888888888 55544444444445544443
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.98 E-value=0.00053 Score=64.24 Aligned_cols=106 Identities=23% Similarity=0.207 Sum_probs=61.7
Q ss_pred hCCCccEeeecccCCCCCCccc-cccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
.+.+|+.|++.++.+. .+.. +..+++|++|++++ +.++... .+.. ++.|+.|++.++......+ +..++
T Consensus 93 ~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~-N~I~~i~--~l~~-l~~L~~L~l~~N~i~~~~~----~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSF-NKITKLE--GLST-LTLLKELNLSGNLISDISG----LESLK 162 (414)
T ss_pred cccceeeeeccccchh--hcccchhhhhcchheeccc-ccccccc--chhh-ccchhhheeccCcchhccC----Cccch
Confidence 5678888888887664 2333 56688888888888 4454322 2333 5568888888776322222 12256
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.|+.++++++....-.... +..+.+++.+.+.++.+.
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666777665322111101 456666777777766544
No 76
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.73 E-value=0.0095 Score=50.88 Aligned_cols=41 Identities=24% Similarity=0.508 Sum_probs=33.2
Q ss_pred CcccCcHHHHHHHHhhhcC---ChhhhhHHhhhhhhHHHHHHhh
Q 012207 11 PFDFLSEEIIFNILDHLNN---DPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~---~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.|..|||||+..||..-.+ |.+++-++++|||.|+..++..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 4688999999999984222 4689999999999999876543
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.51 E-value=0.007 Score=30.24 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=7.3
Q ss_pred CCCCEEeeCCCCccCHHHHH
Q 012207 430 SKLSSLKLGICSNITDEGLK 449 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~ 449 (468)
++|+.|+|++| .|++.++.
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHH
Confidence 34444444444 34444433
No 78
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.37 E-value=0.012 Score=50.66 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCcccCc----HHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 9 SNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 9 ~~~~~~LP----~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.+.+..|| ++|-..||+ |+. ..++..|.+|||+|+++....
T Consensus 72 rDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhccc
Confidence 35788999 999999999 995 999999999999999987654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.10 E-value=0.026 Score=28.13 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=17.8
Q ss_pred CCCCCEEEccCCCCChhhHHhcc
Q 012207 405 CQYLEELDITENEVNDEGLKSIS 427 (468)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~ 427 (468)
+++|++|+|++|.+++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999888765
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.91 E-value=0.01 Score=55.67 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=70.0
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+.+|+.|++.+ +.+.. +...+..+++|+.|++++|.-.+..++. .++.|+.|++.++. ++. +..+. .+
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~~--~~~~~-~l 161 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-ISD--ISGLE-SL 161 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheeccccccccccchh----hccchhhheeccCc-chh--ccCCc-cc
Confidence 467888888887 34432 2332556789999999987633333332 45668889888844 332 22222 36
Q ss_pred CCCCEEEccCCCCChhhH-HhcccCCCCCEEeeCCCCccC
Q 012207 406 QYLEELDITENEVNDEGL-KSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~ 444 (468)
++|+.+++++|.+.+... . +..+.+++.+.+.+| .+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n-~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN-SIR 199 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC-chh
Confidence 888899999888877644 2 456888888999888 554
No 81
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.68 E-value=0.0086 Score=55.68 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=17.3
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|..||++.|.++... ..+.++..|++|-|.+|
T Consensus 213 Li~lDfScNkis~iP-v~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLP-VDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecc-hhhhhhhhheeeeeccC
Confidence 555555555555543 33445555555555555
No 82
>PF13013 F-box-like_2: F-box-like domain
Probab=93.59 E-value=0.11 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=26.0
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCR 42 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~ 42 (468)
.+.+||+||+..||. +.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHH
Confidence 478899999999999 886 778878888877
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.50 E-value=0.0036 Score=58.06 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
..|..++++.+ .++. ++.-+-.+| |+.|-+++|. ++... .-.+..+.|..|+.+.|...+. ...+. .+.+
T Consensus 121 ~~lt~l~ls~N-qlS~--lp~~lC~lp-Lkvli~sNNk-l~~lp--~~ig~~~tl~~ld~s~nei~sl--psql~-~l~s 190 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSH--LPDGLCDLP-LKVLIVSNNK-LTSLP--EEIGLLPTLAHLDVSKNEIQSL--PSQLG-YLTS 190 (722)
T ss_pred hHHHHhhhccc-hhhc--CChhhhcCc-ceeEEEecCc-cccCC--cccccchhHHHhhhhhhhhhhc--hHHhh-hHHH
Confidence 45555666542 2221 222222344 7777777665 33221 1112467788888887653221 12222 6678
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|+.|.+..|.+.+.. ..+. .-.|..|+++.| +|+. ++.-+..+..|++|.+.+||
T Consensus 191 lr~l~vrRn~l~~lp-~El~-~LpLi~lDfScN-kis~--iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCN-KISY--LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHhhhhhhhCC-HHHh-CCceeeeecccC-ceee--cchhhhhhhhheeeeeccCC
Confidence 899999888877754 4444 457899999999 8884 66555589999999999886
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.24 E-value=0.22 Score=25.89 Aligned_cols=20 Identities=40% Similarity=0.792 Sum_probs=9.4
Q ss_pred CCCEEEccCCCCChhhHHhc
Q 012207 407 YLEELDITENEVNDEGLKSI 426 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l 426 (468)
+|++|+|++|.+++.+...+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 34455555555544444433
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.08 E-value=0.16 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
.++|++|+|++| .+++.+...+.+
T Consensus 1 n~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 1 NPSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CCccCEEECCCC-CCCHHHHHHHHH
Confidence 036778888888 788777776654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=91.69 E-value=0.41 Score=44.91 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCC
Q 012207 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (468)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (468)
-.+.|.+.++++++|....-..+..++...|+|+.|+|++.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34456666666666654444445555555666666666653
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.06 E-value=0.24 Score=22.20 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.1
Q ss_pred CCCEEeeCCC
Q 012207 431 KLSSLKLGIC 440 (468)
Q Consensus 431 ~L~~L~l~~~ 440 (468)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.69 E-value=1.5 Score=41.33 Aligned_cols=91 Identities=23% Similarity=0.147 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh--cCCCCCeeEecCCcCCh----
Q 012207 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH--NFPMLQSIKFEDCPVAR---- 317 (468)
Q Consensus 244 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~---- 317 (468)
+..+....|.+..++++++....-.++..+....|+|+.|+|+++....... ..+. +...|++|.+.||++.+
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhh
Confidence 3555566788888888888776667777888888999999998862222111 1222 33468899999987543
Q ss_pred --hHHHHHHHhCCCCCeEec
Q 012207 318 --SGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 318 --~~~~~l~~~~~~L~~L~l 335 (468)
+....+.+.+|+|..|+=
T Consensus 289 ~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hHHHHHHHHHhcchheeecC
Confidence 334555567888877754
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.42 E-value=0.29 Score=47.13 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhc
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKIL 55 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~ 55 (468)
..+.+..||.|+...||. ||+ .+++..++.||+.|+.++....-.+
T Consensus 104 ~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 456889999999999999 997 8999999999999999877654433
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.75 E-value=0.24 Score=23.98 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=5.8
Q ss_pred CCEEEccCCCCC
Q 012207 408 LEELDITENEVN 419 (468)
Q Consensus 408 L~~L~l~~~~~~ 419 (468)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555554444
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.84 E-value=0.12 Score=39.25 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=3.1
Q ss_pred CCCCcEEEcc
Q 012207 124 CRFLTEIDLS 133 (468)
Q Consensus 124 ~~~L~~L~l~ 133 (468)
|++|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 4444444443
No 92
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=82.34 E-value=1.2 Score=31.69 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhH
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKS 36 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~ 36 (468)
.+.|..||.||...|++ +|+ ..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~-~L~-~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILE-YLS-NKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHH-cCC-HHHHHH
Confidence 36899999999999999 997 777754
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.63 E-value=1.7 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCChhh
Q 012207 406 QYLEELDITENEVNDEG 422 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~ 422 (468)
++|+.|++++|.++...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555543
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.63 E-value=1.7 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCChhh
Q 012207 406 QYLEELDITENEVNDEG 422 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~ 422 (468)
++|+.|++++|.++...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555543
No 95
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.46 E-value=0.99 Score=34.14 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=3.1
Q ss_pred CCCCCEEEc
Q 012207 251 CKSLKALNL 259 (468)
Q Consensus 251 ~~~L~~L~l 259 (468)
+++++.+.+
T Consensus 57 ~~~l~~i~~ 65 (129)
T PF13306_consen 57 CKSLESITF 65 (129)
T ss_dssp -TT-EEEEE
T ss_pred ccccccccc
Confidence 334444444
No 96
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=77.37 E-value=4.3 Score=34.42 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=33.6
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHH
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES 49 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~ 49 (468)
...+.+||.|++.+|+. .++|.+|+..++.|-...+.+..
T Consensus 199 ~ltl~dLP~e~vl~Il~-rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILL-RLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHH-HccCcchHHHHHHhhHHHHHHHH
Confidence 44689999999999999 99999999999988766555544
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=70.56 E-value=3.6 Score=20.87 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=3.4
Q ss_pred CCeEeccc
Q 012207 330 LKELSLSK 337 (468)
Q Consensus 330 L~~L~l~~ 337 (468)
|++|.|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.28 E-value=11 Score=19.22 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=6.5
Q ss_pred CCCCEEEccCCCC
Q 012207 406 QYLEELDITENEV 418 (468)
Q Consensus 406 ~~L~~L~l~~~~~ 418 (468)
++|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555544
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=46.57 E-value=47 Score=29.71 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC---CcCCeEEccCC--CCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTC---TSLTSLRMECC--KLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 345 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
.+..+-..-|.++..+|.+...++...+..+...+ ...+...+.+- +..-..++..+.+.++.|++|++.+|.|+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 34444444589999999988888887776665543 33344444331 11122344455567889999999999999
Q ss_pred hhhHHhccc----CCCCCEEeeCCC
Q 012207 420 DEGLKSISR----CSKLSSLKLGIC 440 (468)
Q Consensus 420 ~~~~~~l~~----~~~L~~L~l~~~ 440 (468)
..++.++.. -.+|..+.+.+-
T Consensus 269 g~gi~a~~~al~~n~tl~el~~dnq 293 (353)
T KOG3735|consen 269 GLGIMALLRALQSNKSLTELKNDNQ 293 (353)
T ss_pred cHHHHHHHHHHhccchhhHhhhhhH
Confidence 988777542 346666666543
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=38.88 E-value=21 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=7.3
Q ss_pred CCCEEEccCCCCCh
Q 012207 407 YLEELDITENEVND 420 (468)
Q Consensus 407 ~L~~L~l~~~~~~~ 420 (468)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555443
No 101
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=35.24 E-value=1.3e+02 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCEEEccCCcccChhhH
Q 012207 242 DGLASVEYSCKSLKALNLSKCQNISHVGL 270 (468)
Q Consensus 242 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 270 (468)
..+..+...-+.++..++.+...+....+
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~l 216 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETL 216 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHH
Confidence 34444555556677777766555554433
No 102
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=34.47 E-value=27 Score=26.00 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=4.5
Q ss_pred cCCCCCEEEcc
Q 012207 404 QCQYLEELDIT 414 (468)
Q Consensus 404 ~~~~L~~L~l~ 414 (468)
.++.|.. +++
T Consensus 59 ~~~~l~~-dls 68 (120)
T PF03382_consen 59 GCSSLNQ-DLS 68 (120)
T ss_pred hhhhcCC-Ccc
Confidence 4444444 443
No 103
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=30.02 E-value=1.1e+02 Score=29.00 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=23.4
Q ss_pred cCCCCCEEEccCCCCChhhHHhccc----CCCCCEEeeCCCCccCHHHHH
Q 012207 404 QCQYLEELDITENEVNDEGLKSISR----CSKLSSLKLGICSNITDEGLK 449 (468)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~ 449 (468)
.-+.+.+|++++|...+.+...+.+ ...++.+..+.| .+++.++.
T Consensus 438 stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n-~p~~~gl~ 486 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN-LPEDPGLG 486 (553)
T ss_pred cCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC-Cccccccc
Confidence 3456777777776665544333331 224555555555 55544443
No 104
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=28.07 E-value=37 Score=30.36 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCcccCcHHHHHHHHhhhcCC-------hhhhhHHhhhhhhHHHHHHhh
Q 012207 10 NPFDFLSEEIIFNILDHLNND-------PFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~-------~~~~~~~~~v~~~w~~~~~~~ 51 (468)
..|.+||.|.+..|.. .... .+..+.++-||+.|+++..+.
T Consensus 43 ~~~~~l~~~~L~d~~~-r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLK-RDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhh-hccccccccccccccccccchhhhhhhhcccc
Confidence 4788999999999998 6642 245788999999999976543
Done!