Query 012207
Match_columns 468
No_of_seqs 374 out of 3588
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 04:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 6E-44 2E-48 350.2 35.0 446 9-467 3-517 (594)
2 3ogk_B Coronatine-insensitive 100.0 7.5E-43 2.6E-47 342.1 34.2 456 1-467 1-524 (592)
3 2p1m_B Transport inhibitor res 100.0 3.7E-33 1.3E-37 273.6 35.3 391 63-466 97-541 (594)
4 3ogk_B Coronatine-insensitive 100.0 6.6E-32 2.3E-36 264.5 34.0 392 63-465 104-547 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-29 5.9E-34 239.6 31.7 383 71-467 3-438 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 9.6E-29 3.3E-33 234.5 34.3 386 63-461 20-460 (461)
7 2ast_B S-phase kinase-associat 100.0 5.4E-29 1.8E-33 225.9 19.8 297 8-342 5-306 (336)
8 3t6q_A CD180 antigen; protein- 99.9 3.5E-28 1.2E-32 238.6 0.2 256 200-467 276-558 (606)
9 3t6q_A CD180 antigen; protein- 99.9 1.1E-27 3.9E-32 235.0 1.0 251 203-467 255-534 (606)
10 3rgz_A Protein brassinosteroid 99.9 3.6E-28 1.2E-32 243.7 -3.1 326 123-467 221-549 (768)
11 3rgz_A Protein brassinosteroid 99.9 4.2E-28 1.4E-32 243.2 -2.7 255 201-467 393-715 (768)
12 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.8E-29 197.7 20.1 237 200-467 108-344 (347)
13 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-26 1E-30 222.3 7.6 182 71-263 26-207 (549)
14 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.3E-28 191.4 21.5 217 200-444 130-346 (347)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-27 5.7E-32 233.8 -5.4 207 251-467 349-556 (606)
16 1o6v_A Internalin A; bacterial 99.9 1.5E-23 5E-28 198.4 21.7 341 71-467 46-386 (466)
17 3v47_A TOLL-like receptor 5B a 99.9 3.6E-26 1.2E-30 216.3 0.3 352 71-440 30-405 (455)
18 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-25 2E-29 211.6 7.8 367 71-467 21-479 (520)
19 1o6v_A Internalin A; bacterial 99.9 8E-23 2.7E-27 193.4 21.2 320 98-467 45-364 (466)
20 2ast_B S-phase kinase-associat 99.9 8.6E-23 2.9E-27 185.0 19.4 242 176-452 47-292 (336)
21 2z63_A TOLL-like receptor 4, v 99.9 1.8E-26 6.3E-31 224.9 -6.4 183 276-467 345-529 (570)
22 4eco_A Uncharacterized protein 99.9 5.4E-26 1.8E-30 222.7 -3.8 346 96-467 203-598 (636)
23 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-25 1.5E-29 219.4 2.0 330 125-467 248-620 (680)
24 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-24 7.6E-29 214.4 6.0 308 66-390 44-363 (680)
25 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-26 1.4E-30 223.9 -6.6 158 301-467 348-508 (606)
26 3v47_A TOLL-like receptor 5B a 99.9 9.8E-25 3.4E-29 206.5 2.8 356 97-467 28-406 (455)
27 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-23 7.4E-28 202.1 10.9 183 97-289 24-207 (549)
28 4ecn_A Leucine-rich repeat pro 99.9 1.8E-24 6E-29 215.5 1.9 345 96-467 445-838 (876)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-24 8.3E-29 208.9 2.8 367 71-467 52-508 (562)
30 4eco_A Uncharacterized protein 99.9 8.3E-25 2.8E-29 214.3 -3.4 327 119-467 200-577 (636)
31 3j0a_A TOLL-like receptor 5; m 99.9 1E-24 3.6E-29 220.9 -6.1 182 278-467 266-462 (844)
32 2ca6_A RAN GTPase-activating p 99.9 1.6E-20 5.3E-25 173.3 22.3 265 174-464 30-338 (386)
33 3o6n_A APL1; leucine-rich repe 99.9 3.2E-23 1.1E-27 191.6 3.6 325 97-459 43-367 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 1E-23 3.5E-28 200.5 0.1 301 124-441 31-331 (477)
35 2ca6_A RAN GTPase-activating p 99.9 4.7E-20 1.6E-24 170.1 24.4 239 223-467 29-314 (386)
36 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-22 9.4E-27 192.9 9.2 367 74-467 3-455 (520)
37 4ecn_A Leucine-rich repeat pro 99.9 6.1E-23 2.1E-27 204.5 3.9 359 63-445 440-841 (876)
38 2z63_A TOLL-like receptor 4, v 99.9 7.2E-25 2.5E-29 213.6 -9.8 156 71-236 28-187 (570)
39 3j0a_A TOLL-like receptor 5; m 99.9 7.1E-24 2.4E-28 214.8 -3.8 249 202-467 266-537 (844)
40 2id5_A Lingo-1, leucine rich r 99.9 3.2E-23 1.1E-27 197.1 0.1 305 96-419 29-333 (477)
41 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-21 5.8E-26 182.6 9.7 309 67-445 38-353 (457)
42 3oja_B Anopheles plasmodium-re 99.8 2.1E-22 7.3E-27 196.2 3.7 322 97-456 49-370 (597)
43 3o6n_A APL1; leucine-rich repe 99.8 1.5E-21 5.3E-26 180.4 8.5 307 124-467 44-350 (390)
44 3bz5_A Internalin-J, INLJ; leu 99.8 7.1E-21 2.4E-25 178.4 9.7 303 97-467 40-350 (457)
45 3oja_B Anopheles plasmodium-re 99.8 3.7E-21 1.3E-25 187.5 5.2 307 124-467 50-356 (597)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.6E-21 1.2E-25 186.6 4.9 372 70-467 30-484 (562)
47 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-21 4.5E-26 193.4 -3.7 135 326-467 443-578 (635)
48 3goz_A Leucine-rich repeat-con 99.8 1.2E-17 4.1E-22 152.3 20.0 257 181-446 3-299 (362)
49 2z80_A TOLL-like receptor 2, v 99.7 3.5E-19 1.2E-23 162.1 4.6 236 200-443 74-314 (353)
50 1ogq_A PGIP-2, polygalacturona 99.7 4.6E-21 1.6E-25 171.1 -7.8 179 276-467 123-302 (313)
51 3goz_A Leucine-rich repeat-con 99.7 4.1E-17 1.4E-21 148.8 16.3 251 168-424 14-302 (362)
52 1xku_A Decorin; proteoglycan, 99.7 9.1E-19 3.1E-23 157.9 3.0 249 200-467 74-330 (330)
53 3o53_A Protein LRIM1, AGAP0063 99.7 4E-19 1.4E-23 158.9 -0.9 243 171-465 29-271 (317)
54 1xku_A Decorin; proteoglycan, 99.7 3.1E-18 1.1E-22 154.4 4.2 266 177-467 32-304 (330)
55 4g8a_A TOLL-like receptor 4; l 99.7 2.4E-19 8.2E-24 177.2 -3.4 140 298-443 440-580 (635)
56 2z66_A Variable lymphocyte rec 99.7 2.9E-19 1E-23 159.3 -3.5 231 202-444 28-261 (306)
57 3zyj_A Leucine-rich repeat-con 99.7 2.3E-18 7.8E-23 161.6 1.0 226 202-440 64-289 (440)
58 3zyi_A Leucine-rich repeat-con 99.7 2.5E-18 8.5E-23 161.9 1.1 226 202-440 75-300 (452)
59 2ft3_A Biglycan; proteoglycan, 99.7 4.6E-19 1.6E-23 159.9 -3.7 268 125-440 54-330 (332)
60 1ogq_A PGIP-2, polygalacturona 99.7 9.9E-20 3.4E-24 162.4 -8.1 230 200-444 74-305 (313)
61 1wwl_A Monocyte differentiatio 99.7 2.7E-19 9.2E-24 159.7 -5.6 155 303-467 149-307 (312)
62 2z80_A TOLL-like receptor 2, v 99.7 8.3E-18 2.8E-22 153.0 4.0 252 201-467 51-312 (353)
63 2z66_A Variable lymphocyte rec 99.7 3.9E-19 1.3E-23 158.5 -5.1 249 205-467 10-259 (306)
64 1jl5_A Outer protein YOPM; leu 99.7 7.6E-17 2.6E-21 151.0 8.6 54 355-420 318-371 (454)
65 1jl5_A Outer protein YOPM; leu 99.7 2E-16 6.7E-21 148.2 11.0 321 71-467 71-407 (454)
66 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-18 9.9E-23 154.7 -2.4 271 175-467 53-331 (332)
67 3oja_A Leucine-rich immune mol 99.7 1E-17 3.4E-22 158.5 0.9 236 203-464 35-270 (487)
68 4fcg_A Uncharacterized protein 99.7 9.6E-18 3.3E-22 150.4 0.3 232 175-440 80-311 (328)
69 3o53_A Protein LRIM1, AGAP0063 99.7 7.1E-18 2.4E-22 150.9 -0.6 129 118-263 27-155 (317)
70 3zyi_A Leucine-rich repeat-con 99.6 2.9E-17 9.9E-22 154.6 0.5 227 125-365 75-301 (452)
71 3zyj_A Leucine-rich repeat-con 99.6 2.7E-17 9.2E-22 154.3 -0.1 157 200-365 134-290 (440)
72 4fcg_A Uncharacterized protein 99.6 6.5E-18 2.2E-22 151.5 -4.8 225 200-466 79-311 (328)
73 1wwl_A Monocyte differentiatio 99.6 4.2E-17 1.4E-21 145.5 -0.5 253 148-445 41-310 (312)
74 1ozn_A Reticulon 4 receptor; N 99.6 8.8E-17 3E-21 141.7 1.5 204 202-440 32-235 (285)
75 1ozn_A Reticulon 4 receptor; N 99.6 8.3E-17 2.8E-21 141.8 1.2 206 225-467 31-236 (285)
76 3g06_A SSPH2 (leucine-rich rep 99.6 4.3E-15 1.5E-19 143.5 12.3 152 99-288 40-191 (622)
77 4glp_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 139.6 4.3 232 225-467 63-305 (310)
78 3g06_A SSPH2 (leucine-rich rep 99.6 1.7E-15 5.8E-20 146.3 8.6 265 125-451 40-304 (622)
79 3un9_A NLR family member X1; l 99.6 4.1E-14 1.4E-18 128.4 15.1 172 277-453 71-261 (372)
80 3oja_A Leucine-rich immune mol 99.6 1.7E-16 5.8E-21 150.1 -0.7 149 97-263 32-180 (487)
81 4glp_A Monocyte differentiatio 99.5 6E-15 2.1E-19 131.4 7.8 229 176-445 64-308 (310)
82 3un9_A NLR family member X1; l 99.5 1.3E-13 4.5E-18 125.1 16.2 190 251-446 71-285 (372)
83 1h6u_A Internalin H; cell adhe 99.5 2.2E-14 7.6E-19 127.4 9.8 195 221-444 36-230 (308)
84 1h6u_A Internalin H; cell adhe 99.5 6E-14 2E-18 124.6 11.6 195 200-422 39-233 (308)
85 2z62_A TOLL-like receptor 4, v 99.5 1.2E-15 4.2E-20 133.6 -1.4 35 406-440 200-234 (276)
86 3e4g_A ATP synthase subunit S, 99.5 2.4E-14 8.3E-19 112.4 5.9 104 355-460 62-171 (176)
87 2z62_A TOLL-like receptor 4, v 99.4 2.9E-15 1E-19 131.2 -2.9 160 299-467 72-235 (276)
88 1p9a_G Platelet glycoprotein I 99.4 1.2E-14 4E-19 127.8 0.8 201 222-441 6-206 (290)
89 2o6q_A Variable lymphocyte rec 99.4 5.5E-15 1.9E-19 128.9 -1.3 181 251-441 36-216 (270)
90 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.7E-18 108.2 6.5 105 304-410 62-171 (176)
91 3rfs_A Internalin B, repeat mo 99.4 1.7E-14 5.9E-19 125.8 0.6 181 220-440 35-215 (272)
92 4ezg_A Putative uncharacterize 99.4 1.3E-13 4.4E-18 113.9 4.1 149 277-440 43-191 (197)
93 1h6t_A Internalin B; cell adhe 99.4 4.1E-13 1.4E-17 118.1 6.8 169 251-444 45-213 (291)
94 3rfs_A Internalin B, repeat mo 99.4 1.3E-13 4.5E-18 120.2 3.6 36 200-235 83-118 (272)
95 2xwt_C Thyrotropin receptor; s 99.3 3.3E-14 1.1E-18 121.6 -3.8 135 175-316 79-218 (239)
96 4ezg_A Putative uncharacterize 99.3 5.1E-12 1.7E-16 104.3 9.2 129 175-315 65-193 (197)
97 1m9s_A Internalin B; cell inva 99.3 1.6E-12 5.5E-17 125.4 6.8 170 251-445 42-211 (605)
98 1h6t_A Internalin B; cell adhe 99.3 5.2E-12 1.8E-16 111.0 9.1 179 220-424 40-218 (291)
99 2xwt_C Thyrotropin receptor; s 99.3 2.7E-14 9.4E-19 122.1 -5.6 201 226-467 31-237 (239)
100 2o6q_A Variable lymphocyte rec 99.3 6.4E-13 2.2E-17 115.7 2.7 61 200-262 107-167 (270)
101 3m19_A Variable lymphocyte rec 99.2 4.2E-13 1.4E-17 115.5 -1.3 158 278-444 35-192 (251)
102 3m19_A Variable lymphocyte rec 99.2 1.1E-12 3.6E-17 113.0 0.6 161 251-421 34-194 (251)
103 1m9s_A Internalin B; cell inva 99.2 1.6E-11 5.6E-16 118.4 8.6 181 220-426 37-217 (605)
104 1p9a_G Platelet glycoprotein I 99.2 5.1E-13 1.8E-17 117.3 -2.0 198 251-467 9-206 (290)
105 2ra8_A Uncharacterized protein 99.2 3.4E-11 1.2E-15 108.2 9.6 182 251-440 138-340 (362)
106 2ra8_A Uncharacterized protein 99.2 9E-11 3.1E-15 105.4 11.7 160 247-417 167-341 (362)
107 3sb4_A Hypothetical leucine ri 99.2 1.9E-12 6.4E-17 116.3 0.6 290 149-463 24-328 (329)
108 1io0_A Tropomodulin; LRR prote 99.2 9.3E-10 3.2E-14 89.2 15.7 127 318-447 26-167 (185)
109 2je0_A Acidic leucine-rich nuc 99.2 9E-12 3.1E-16 97.7 3.3 130 328-465 17-149 (149)
110 1xeu_A Internalin C; cellular 99.1 9.3E-12 3.2E-16 107.6 2.5 148 275-444 38-185 (263)
111 2ell_A Acidic leucine-rich nuc 99.1 4.1E-12 1.4E-16 101.9 0.0 109 352-467 47-158 (168)
112 3sb4_A Hypothetical leucine ri 99.1 1.8E-12 6.3E-17 116.3 -2.4 292 124-437 24-328 (329)
113 1dce_A Protein (RAB geranylger 99.1 1.8E-12 6.1E-17 124.3 -4.6 156 294-463 400-567 (567)
114 1io0_A Tropomodulin; LRR prote 99.1 2.9E-09 1E-13 86.3 15.0 128 292-422 25-167 (185)
115 4ay9_X Follicle-stimulating ho 99.1 3.2E-13 1.1E-17 122.4 -9.8 36 202-237 30-65 (350)
116 2je0_A Acidic leucine-rich nuc 99.1 3.5E-10 1.2E-14 88.5 8.3 129 202-336 17-148 (149)
117 1xeu_A Internalin C; cellular 99.0 1.1E-10 3.6E-15 100.9 4.9 170 226-422 19-188 (263)
118 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.7E-10 9.4E-15 70.6 4.2 41 8-50 5-45 (53)
119 2v70_A SLIT-2, SLIT homolog 2 99.0 1.4E-11 4.8E-16 103.4 -2.6 151 281-441 14-164 (220)
120 4ay9_X Follicle-stimulating ho 99.0 4.5E-12 1.5E-16 114.8 -6.8 225 126-363 31-255 (350)
121 2o6s_A Variable lymphocyte rec 99.0 1.6E-11 5.4E-16 102.4 -3.3 58 278-337 28-85 (208)
122 2ell_A Acidic leucine-rich nuc 99.0 5.3E-10 1.8E-14 89.5 5.7 131 202-338 24-157 (168)
123 2xot_A Amphoterin-induced prot 99.0 3.7E-11 1.3E-15 109.2 -1.6 158 278-442 39-201 (361)
124 1ds9_A Outer arm dynein; leuci 98.9 2.8E-11 9.7E-16 99.8 -2.9 58 379-440 92-150 (198)
125 3cvr_A Invasion plasmid antige 98.9 2.8E-09 9.5E-14 101.8 10.3 53 302-365 139-191 (571)
126 1a9n_A U2A', U2A'; complex (nu 98.9 2E-10 6.9E-15 92.7 1.5 134 300-444 16-153 (176)
127 2v9t_B SLIT homolog 2 protein 98.9 7.6E-11 2.6E-15 98.9 -1.8 132 303-441 32-163 (220)
128 3cvr_A Invasion plasmid antige 98.9 3E-10 1E-14 108.4 1.8 189 226-452 59-251 (571)
129 2o6s_A Variable lymphocyte rec 98.9 3E-10 1E-14 94.5 1.1 34 202-235 28-61 (208)
130 1dce_A Protein (RAB geranylger 98.9 2E-10 6.7E-15 110.2 -0.2 179 123-316 347-546 (567)
131 2xot_A Amphoterin-induced prot 98.9 1.6E-10 5.4E-15 105.0 -1.3 161 251-420 38-203 (361)
132 1a9n_A U2A', U2A'; complex (nu 98.8 5.9E-10 2E-14 89.9 1.3 81 304-390 43-123 (176)
133 2v70_A SLIT-2, SLIT homolog 2 98.8 3.1E-10 1E-14 95.2 -1.2 134 278-419 32-166 (220)
134 2v9t_B SLIT homolog 2 protein 98.8 1.9E-09 6.5E-14 90.3 3.3 33 203-235 33-65 (220)
135 1ds9_A Outer arm dynein; leuci 98.8 4.1E-10 1.4E-14 92.9 -1.4 128 297-436 42-180 (198)
136 3e6j_A Variable lymphocyte rec 98.7 5.5E-09 1.9E-13 88.1 4.6 59 202-262 40-98 (229)
137 3e6j_A Variable lymphocyte rec 98.7 4.6E-09 1.6E-13 88.6 3.6 111 200-316 62-172 (229)
138 4fs7_A Uncharacterized protein 98.6 2.9E-10 9.8E-15 104.7 -7.0 233 199-461 159-393 (394)
139 2wfh_A SLIT homolog 2 protein 98.6 5.4E-09 1.9E-13 85.4 1.2 108 328-442 31-138 (193)
140 1w8a_A SLIT protein; signaling 98.6 2.4E-09 8E-14 87.7 -1.8 129 306-444 11-139 (192)
141 1pgv_A TMD-1, tropomodulin TMD 98.5 2.8E-06 9.5E-11 68.1 14.6 124 318-444 31-170 (197)
142 1w8a_A SLIT protein; signaling 98.5 6.1E-09 2.1E-13 85.2 -2.1 130 281-420 11-140 (192)
143 2o6r_A Variable lymphocyte rec 98.5 1.5E-08 5.2E-13 81.7 0.0 129 305-444 9-137 (177)
144 1pgv_A TMD-1, tropomodulin TMD 98.5 2.5E-06 8.5E-11 68.4 12.7 126 293-420 31-171 (197)
145 4b8c_D Glucose-repressible alc 98.4 2.5E-08 8.5E-13 98.9 -0.3 110 326-446 222-331 (727)
146 2wfh_A SLIT homolog 2 protein 98.4 4.3E-08 1.5E-12 80.0 1.0 109 303-419 31-139 (193)
147 4b8c_D Glucose-repressible alc 98.3 3.1E-08 1E-12 98.2 -1.9 138 295-444 216-354 (727)
148 4fdw_A Leucine rich hypothetic 98.3 6.8E-08 2.3E-12 88.5 0.5 268 123-440 111-380 (401)
149 4fdw_A Leucine rich hypothetic 98.3 1E-08 3.6E-13 93.8 -5.7 167 278-465 203-379 (401)
150 4fs7_A Uncharacterized protein 98.3 2.5E-08 8.5E-13 91.8 -3.9 233 174-435 160-393 (394)
151 2o6r_A Variable lymphocyte rec 98.3 7.7E-07 2.6E-11 71.6 5.2 110 202-316 28-137 (177)
152 3g39_A Variable lymphocyte rec 98.2 4.2E-07 1.4E-11 72.5 1.4 86 354-444 30-115 (170)
153 2r9u_A Variable lymphocyte rec 98.1 5.1E-07 1.7E-11 72.2 1.4 86 354-444 33-118 (174)
154 2e31_A FBS1, F-box only protei 98.1 1.9E-06 6.6E-11 73.5 4.1 40 10-51 49-89 (297)
155 3l2o_B F-box only protein 4; s 98.0 2.6E-06 8.8E-11 71.6 2.6 39 11-51 4-42 (312)
156 3rw6_A Nuclear RNA export fact 97.9 2.8E-05 9.7E-10 66.0 8.3 83 377-462 167-257 (267)
157 4gt6_A Cell surface protein; l 97.9 3.8E-07 1.3E-11 83.9 -3.7 310 123-466 61-388 (394)
158 3g39_A Variable lymphocyte rec 97.9 3E-06 1E-10 67.5 1.3 106 305-420 11-116 (170)
159 2r9u_A Variable lymphocyte rec 97.9 3.4E-06 1.1E-10 67.4 1.3 105 306-420 15-119 (174)
160 4gt6_A Cell surface protein; l 97.8 4.1E-06 1.4E-10 76.9 1.7 309 99-440 64-388 (394)
161 3v7d_B Cell division control p 97.7 1.3E-05 4.5E-10 75.4 2.5 43 6-50 9-51 (464)
162 2ifg_A High affinity nerve gro 97.7 1.3E-05 4.4E-10 72.2 1.9 104 332-444 12-116 (347)
163 3rw6_A Nuclear RNA export fact 97.5 0.00035 1.2E-08 59.3 8.8 67 249-316 167-233 (267)
164 2ifg_A High affinity nerve gro 97.4 2.7E-05 9.3E-10 70.1 0.4 104 307-419 12-116 (347)
165 1p22_A F-BOX/WD-repeat protein 97.4 5.9E-05 2E-09 70.3 2.6 43 7-51 6-52 (435)
166 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.00011 3.8E-09 68.6 4.2 42 7-50 14-55 (445)
167 4h09_A Hypothetical leucine ri 96.7 2.2E-05 7.7E-10 71.6 -7.2 128 299-439 213-342 (379)
168 4h09_A Hypothetical leucine ri 93.2 0.0082 2.8E-07 54.5 -1.9 150 123-287 192-342 (379)
169 3rfe_A Platelet glycoprotein I 91.3 0.13 4.4E-06 38.1 2.9 37 407-443 32-68 (130)
170 3rfe_A Platelet glycoprotein I 82.2 2 6.9E-05 31.6 4.8 37 202-238 31-67 (130)
171 2lz0_A Uncharacterized protein 27.8 25 0.00085 24.2 1.5 12 404-415 41-52 (100)
172 2kwv_A RAD30 homolog B, DNA po 25.9 34 0.0012 19.3 1.5 15 11-25 20-34 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6e-44 Score=350.16 Aligned_cols=446 Identities=20% Similarity=0.265 Sum_probs=237.4
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc--cchHHHHhccCCCCcEEecCCCCCCCh
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLDLSLCPRAND 86 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~ 86 (468)
.+.|+.||+||+.+||+ |+++.+|+.++++|||+|+++....+..+.... .......+.++++++.++++++..+.+
T Consensus 3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 36799999999999999 997789999999999999999555444433322 223456778889999999988764432
Q ss_pred h-------------HHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHH-cCCCC
Q 012207 87 D-------------ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA-EAKNL 152 (468)
Q Consensus 87 ~-------------~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L 152 (468)
. ++..+ ...+++|++|+++++. ++...+..+...+++|++|++.+|..+++..+..+. .+++|
T Consensus 82 ~~l~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAM--SSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred cccccccccchhhHHHHHH--HHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 2 12222 3456788888888864 677777777767888888888888666665555554 68888
Q ss_pred CeEeccCCcccChH---hHHHHHhcCCCCcEEeccCCC-CCChHHHHHHHhhCCCccEeeeccc-CCCCCCccccccCCC
Q 012207 153 ERLWLARCKLITDL---GIGRIAACCRKLKLLCLKWCI-RVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVKLQY 227 (468)
Q Consensus 153 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 227 (468)
++|++.+|. +++. .+..+...+++|++|+++++. .++...+..+...+++|++|++++| .+.+ ....+..+++
T Consensus 159 ~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~ 236 (594)
T 2p1m_B 159 KELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQ 236 (594)
T ss_dssp CEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTT
T ss_pred CEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCc
Confidence 888888765 3322 233333346677777777664 3555556666666777777777765 1111 1111223344
Q ss_pred CCeeeecCCC----------------------------CCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 228 LEDLVLEGCH----------------------------GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 228 L~~L~l~~~~----------------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
|++|.+..+. ......+..+...+++|++|+++++. +.+..+..+...+++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 4444332211 01111111111124445555555444 444444444444555
Q ss_pred cceEeecCCCCCchhHHHH-hhcCCCCCeeEec---------CCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHH
Q 012207 280 LQQLILAYSFWVSADLSKC-LHNFPMLQSIKFE---------DCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFV 349 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~---------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 349 (468)
|++|++.++ ..+..... ...+++|++|++. .+.+++.++..+...+++|++|.+. |+.+++.++..+
T Consensus 316 L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l 392 (594)
T 2p1m_B 316 LQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITI 392 (594)
T ss_dssp CCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHH
T ss_pred cCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHH
Confidence 555555444 22221221 2234455555442 1234444444444344555555332 234444444444
Q ss_pred HHhCCCCCeEecC-----CCCCCC----HHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 350 VQSHKELRKLDIT-----CCRKIT----YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 350 ~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
...+++|+.|+++ +|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|.+++
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 4444555555554 333444 444444444455555555533 34444444444334555555555555544
Q ss_pred hhHHhc-ccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 421 EGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 421 ~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.++..+ ..+++|+.|++++| .+++.++..+...+++|+.|++++|+
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 444444 23455555555555 34444444444444555555555543
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7.5e-43 Score=342.08 Aligned_cols=456 Identities=18% Similarity=0.240 Sum_probs=304.2
Q ss_pred Ccccccc-CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc--cchHHHHhccCCCCcEEe
Q 012207 1 MEAKRKK-NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLD 77 (468)
Q Consensus 1 m~~~~~~-~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~ 77 (468)
||....+ .......||+||+.+||+ |+++.+|+.++++|||+|+.+....++.+.... ...+...+.+++++++|+
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp -----------CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEE
Confidence 5554322 223445799999999999 994499999999999999999766555444332 234567788899999999
Q ss_pred cCCCCCCCh-------------hHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCC-CcEEEccCCCccCHHHH
Q 012207 78 LSLCPRAND-------------DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF-LTEIDLSNGTEMGDAAA 143 (468)
Q Consensus 78 l~~~~~~~~-------------~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 143 (468)
+++++.+.+ .++..+ ...+++|++|+++++ .++...+..+...+++ |++|++++|..+.+..+
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEI--SNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHH--HhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 987654332 123322 336788999999887 4677666666655666 99999988865666555
Q ss_pred HHHH-cCCCCCeEeccCCcccChHh---HHHHHhcCCCCcEEeccCCCC--CChHHHHHHHhhCCCccEeeecccCCCCC
Q 012207 144 AAIA-EAKNLERLWLARCKLITDLG---IGRIAACCRKLKLLCLKWCIR--VTDLGVELVALKCQEIRTLDLSYLPITEK 217 (468)
Q Consensus 144 ~~l~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (468)
..+. .+++|++|++.+|. +.+.+ +..+...+++|++|+++++.. +....+..+...+++|++|+++++.+..
T Consensus 157 ~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 5444 68899999998874 33222 555666688888888876532 2455666677788888888888775432
Q ss_pred CccccccCCCCCeeeecCCCC------------------------CChHHHHHHHhcCCCCCEEEccCCcccChhhHHHH
Q 012207 218 CLPPVVKLQYLEDLVLEGCHG------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273 (468)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (468)
....+..+++|++|.++.... .....+..+...+++|++|+++++. +.+..+..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH
Confidence 222233444555554432110 1111222233346778888888776 666666666
Q ss_pred HhcCCccceEeecCCCCCchh-HHHHhhcCCCCCeeEecC-----------CcCChhHHHHHHHhCCCCCeEecccCCCC
Q 012207 274 IKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFED-----------CPVARSGIKAIGNWHGSLKELSLSKCSGV 341 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 341 (468)
+..+++|++|++..+ +.+. .......+++|++|++.+ +.+++.++..+...+++|++|+++ |+.+
T Consensus 314 ~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l 390 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDI 390 (592)
T ss_dssp HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCC
T ss_pred HHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCc
Confidence 777788888887732 3333 333345677888888883 457777777776677888888884 4677
Q ss_pred CHHHHHHHHHhCCCCCeEecC---CCCCCCH----HHHHHHHhcCCcCCeEEccCCC-CCCHHHHHHHHhcCCCCCEEEc
Q 012207 342 TDEELSFVVQSHKELRKLDIT---CCRKITY----ASINSITKTCTSLTSLRMECCK-LVSWEAFVLIGQQCQYLEELDI 413 (468)
Q Consensus 342 ~~~~l~~~~~~~~~L~~L~l~---~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l 413 (468)
++.++..+...+++|++|+++ .|..+++ .++..+...+++|++|+++.|. .+++.++..+...+++|+.|++
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 777777776667888888886 2444554 3566666678888888887655 3677777777767888888888
Q ss_pred cCCCCChhhHHhc-ccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.+++.++..+ ..+++|+.|++++| .+++.++..+...+++|+.|++++|+
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCc
Confidence 8888877665554 46788888888888 57777777777778888888888775
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3.7e-33 Score=273.59 Aligned_cols=391 Identities=18% Similarity=0.257 Sum_probs=311.5
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
+..+...+++|++|+++++. +.+..+..+ ...+++|++|++.+|..++...+..+...+++|++|++++|. +++..
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 34556788999999999875 677766665 234789999999998778888888888889999999999884 44332
Q ss_pred HHHHH----cCCCCCeEeccCCc-ccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccC----
Q 012207 143 AAAIA----EAKNLERLWLARCK-LITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP---- 213 (468)
Q Consensus 143 ~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 213 (468)
...+. .+++|++|++.++. .++...+..+...+++|++|++.+|..++. +......+++|++|.+..+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEcccccccCccc
Confidence 23333 46799999999875 466677777777799999999998744333 56666688888888765431
Q ss_pred ----------------------C---CCCCcccc-ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccCh
Q 012207 214 ----------------------I---TEKCLPPV-VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH 267 (468)
Q Consensus 214 ----------------------~---~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 267 (468)
+ ....+..+ ..+++|++|++++|. +.+..+..+...+++|++|++.++ +.+
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 1 11112222 257999999999976 887777776667999999999987 556
Q ss_pred hhHHHHHhcCCccceEeec--------CCCCCchhHHHHhh-cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc--
Q 012207 268 VGLSSLIKGADYLQQLILA--------YSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (468)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~--------~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (468)
.++..+...+++|++|++. .+..+++.....+. .+++|++|.+..+.+++..+..+...+++|++|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 7777788889999999993 34456665555554 599999999988899999999998789999999999
Q ss_pred ---cCCCCC----HHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC
Q 012207 337 ---KCSGVT----DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (468)
Q Consensus 337 ---~~~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (468)
+|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..+...+++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 677888 788888899999999999976 68999988888779999999999976 88999988877899999
Q ss_pred EEEccCCCCChhhHHhcc-cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 410 ELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
+|++++|.+++.++..+. .+++|+.|++++| .++..++..+...+|+|+...+..+
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999999999888877655 5899999999999 7799899998888999976665543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=6.6e-32 Score=264.48 Aligned_cols=392 Identities=14% Similarity=0.157 Sum_probs=310.6
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHH-
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA- 141 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 141 (468)
+......+++|++|+++++ .+.+..+..+ ......+|++|+++++..+....+..+...+++|++|++++|. +.+.
T Consensus 104 l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~ 180 (592)
T 3ogk_B 104 VTEISNNLRQLKSVHFRRM-IVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKD 180 (592)
T ss_dssp HHHHHHHCTTCCEEEEESC-BCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCC
T ss_pred HHHHHhhCCCCCeEEeecc-EecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcc
Confidence 4556668999999999988 4777766665 2222234999999998878888888888899999999999984 3322
Q ss_pred ---HHHHHHcCCCCCeEeccCCcc--cChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCC-
Q 012207 142 ---AAAAIAEAKNLERLWLARCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT- 215 (468)
Q Consensus 142 ---~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 215 (468)
.......+++|++|++.++.. +....+..+...+++|++|++.+|. +.. +......+++|++|+++.....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE--LVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG--GHHHHHHCTTCCEEEECBCCCCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH--HHHHHhhhhHHHhhccccccccc
Confidence 223456799999999987653 2456777777789999999999974 333 3345568899999998743111
Q ss_pred ------------------------CCCcc-ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhH
Q 012207 216 ------------------------EKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGL 270 (468)
Q Consensus 216 ------------------------~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 270 (468)
...+. .+..+++|++|++++|. +.+..+..+...+++|++|++. ..+.+.++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l 334 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGL 334 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHH
T ss_pred chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHH
Confidence 11122 23468899999999976 7777776666669999999999 34667778
Q ss_pred HHHHhcCCccceEeecC----------CCCCchhHHHH-hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc--
Q 012207 271 SSLIKGADYLQQLILAY----------SFWVSADLSKC-LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK-- 337 (468)
Q Consensus 271 ~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~-- 337 (468)
..+...+++|++|+++. |..+.+..... ...+++|++|.+..+.+++..+..+...+++|++|++++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 88888999999999994 66666654444 557999999999888999999999987799999999973
Q ss_pred -CCCCCH----HHHHHHHHhCCCCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEE
Q 012207 338 -CSGVTD----EELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (468)
Q Consensus 338 -~~~~~~----~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (468)
|+.+++ .++..++.++++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+...+++|++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCee
Confidence 556765 5788888899999999998765 47888888888889999999999865 8988888888899999999
Q ss_pred EccCCCCChhhHHhcc-cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCC
Q 012207 412 DITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (468)
Q Consensus 412 ~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (468)
++++|.+++.++..+. .+++|+.|++++| ++++.++..+...+|.+....+..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999888776654 7999999999999 799988888888899887766554
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.7e-29 Score=239.58 Aligned_cols=383 Identities=21% Similarity=0.273 Sum_probs=285.6
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHH---HHHHhhhcCCCCcEEEccCCCccCHHHHHHHH
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV---GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 147 (468)
+.+++|+++++. +.+..+..+ ...+++|++|+++++. +... .+......+++|++|+++++ .+++.....+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred ccceehhhhhcc-cCchhHHHH--HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHH
Confidence 568899998764 666555543 4667899999999876 5544 34455557899999999998 47776666665
Q ss_pred c-CC----CCCeEeccCCcccChHhHHH---HHhcCCCCcEEeccCCCCCChHHHHHHHhh----CCCccEeeecccCCC
Q 012207 148 E-AK----NLERLWLARCKLITDLGIGR---IAACCRKLKLLCLKWCIRVTDLGVELVALK----CQEIRTLDLSYLPIT 215 (468)
Q Consensus 148 ~-~~----~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~ 215 (468)
. ++ +|++|+++++. +++.++.. ....+++|++|+++++. +++.+...+... .++|++|++++|.++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 4 55 69999999975 66654333 34458999999999974 766666555443 468999999999888
Q ss_pred CCCccc----cccCCCCCeeeecCCCCCChHHHHHHHh----cCCCCCEEEccCCcccChhh---HHHHHhcCCccceEe
Q 012207 216 EKCLPP----VVKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVG---LSSLIKGADYLQQLI 284 (468)
Q Consensus 216 ~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 284 (468)
+..... +..+++|++|+++++ .+.+.....+.. ..++|++|+++++. +...+ +...+..+++|++|+
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEe
Confidence 765443 446799999999995 477666655544 35699999999986 44433 455566789999999
Q ss_pred ecCCCCCchhHHHHh-----hcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHHHHHh----
Q 012207 285 LAYSFWVSADLSKCL-----HNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFVVQS---- 352 (468)
Q Consensus 285 l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~~~~---- 352 (468)
++++ .+.+.....+ ..+++|++|++++|.+++.+...+.. .+++|++|+++++ .+++.+...+...
T Consensus 234 Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 234 LGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEP 311 (461)
T ss_dssp CCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTST
T ss_pred ccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccC
Confidence 9998 4444433222 25899999999999999887554443 5899999999985 6777766555543
Q ss_pred CCCCCeEecCCCCCCCHHH---HHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhc----CCCCCEEEccCCCCChhhHH-
Q 012207 353 HKELRKLDITCCRKITYAS---INSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ----CQYLEELDITENEVNDEGLK- 424 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~- 424 (468)
.++|++|++++|. +++.+ +......+++|++|++++| .+++.+...+... .++|++|++++|.+++.+..
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 2699999999987 65543 3444457899999999996 5888777766542 67999999999999985444
Q ss_pred ---hcccCCCCCEEeeCCCCccCHHHHHHHHhcCc----ccCeeecCCCC
Q 012207 425 ---SISRCSKLSSLKLGICSNITDEGLKHVGSTCS----MLKELDLYRFS 467 (468)
Q Consensus 425 ---~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~l~~c~ 467 (468)
.+..+++|+.|++++| .+++.++..+.+.+| +|+.|.+.++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 4557899999999999 999988887776554 59999888764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.6e-29 Score=234.47 Aligned_cols=386 Identities=20% Similarity=0.272 Sum_probs=290.0
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhh-cccccCCccEEecCCCCcccHHHHHHhhhcCC----CCcEEEccCCCc
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCR----FLTEIDLSNGTE 137 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~ 137 (468)
+...+..+++++.|+++++. +.+.....++ ....+++|++|+++++. +....+..+...++ +|++|+++++ .
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 96 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-C 96 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS-C
T ss_pred HHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC-C
Confidence 55567888999999999885 6665544442 23557899999999865 67777777776666 7999999998 4
Q ss_pred cCHH----HHHHHHcCCCCCeEeccCCcccChHhHHHHHhc----CCCCcEEeccCCCCCChHH---HHHHHhhCCCccE
Q 012207 138 MGDA----AAAAIAEAKNLERLWLARCKLITDLGIGRIAAC----CRKLKLLCLKWCIRVTDLG---VELVALKCQEIRT 206 (468)
Q Consensus 138 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~ 206 (468)
+++. ....+..+++|++|+++++. +++.+...+... .++|++|++++| .+++.+ +......+++|++
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 174 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKE 174 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCE
Confidence 6643 34566789999999999975 777666666553 457999999997 455533 3444557899999
Q ss_pred eeecccCCCCCCcccccc-----CCCCCeeeecCCCCCChHHH----HHHHhcCCCCCEEEccCCcccChhhHHHHH---
Q 012207 207 LDLSYLPITEKCLPPVVK-----LQYLEDLVLEGCHGIDDDGL----ASVEYSCKSLKALNLSKCQNISHVGLSSLI--- 274 (468)
Q Consensus 207 L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--- 274 (468)
|+++++.+.+.....+.. .++|++|++++| .+.+.+. ..+. .+++|++|+++++. +.+.++..+.
T Consensus 175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~-l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-SKASLRELALGSNK-LGDVGMAELCPGL 251 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-hCCCccEEeccCCc-CChHHHHHHHHHH
Confidence 999999887665555542 669999999996 5555432 2333 48999999999985 5555544433
Q ss_pred -hcCCccceEeecCCCCCchh----HHHHhhcCCCCCeeEecCCcCChhHHHHHHHh----CCCCCeEecccCCCCCHHH
Q 012207 275 -KGADYLQQLILAYSFWVSAD----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW----HGSLKELSLSKCSGVTDEE 345 (468)
Q Consensus 275 -~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~ 345 (468)
..+++|++|++++| .+... ++..+..+++|++|++++|.+.+.+...+... .++|++|++++| .+++.+
T Consensus 252 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 329 (461)
T 1z7x_W 252 LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAAC 329 (461)
T ss_dssp TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG
T ss_pred hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHH
Confidence 35789999999998 55544 56667789999999999999988887777643 269999999996 466543
Q ss_pred ---HHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc----CCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccC
Q 012207 346 ---LSFVVQSHKELRKLDITCCRKITYASINSITKT----CTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITE 415 (468)
Q Consensus 346 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~ 415 (468)
+...+..+++|++|++++|. +++.+...+... .++|++|++++|. +++.+...+. ..+++|++|++++
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC
Confidence 55566778999999999985 887776655542 6799999999974 8875544433 3689999999999
Q ss_pred CCCChhhHHhccc-----CCCCCEEeeCCCCccCH---HHHHHHHhcCcccCee
Q 012207 416 NEVNDEGLKSISR-----CSKLSSLKLGICSNITD---EGLKHVGSTCSMLKEL 461 (468)
Q Consensus 416 ~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L 461 (468)
|.+++.+...+.. .++|+.|.+.++ .... ..+..+.+..|+|+.+
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEee
Confidence 9999988777652 347999988887 5543 3455677788998865
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=5.4e-29 Score=225.91 Aligned_cols=297 Identities=19% Similarity=0.265 Sum_probs=194.0
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccccchHHHHhccCCCCcEEecCCCCCCChh
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDD 87 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 87 (468)
....|+.||+||+.+||+ |++ .+|+.++++|||+|++++... ..++.++++++. +.+.
T Consensus 5 ~~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~~-~~~~ 62 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGKN-LHPD 62 (336)
T ss_dssp --CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTCB-CCHH
T ss_pred ccCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeecccccc-CCHH
Confidence 356799999999999999 997 999999999999999987432 124556666543 2232
Q ss_pred HHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHH-HHHHHHcCCCCCeEeccCCcccChH
Q 012207 88 ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA-AAAAIAEAKNLERLWLARCKLITDL 166 (468)
Q Consensus 88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~ 166 (468)
.+..+ ..++++.+++.++. +.... ..+. .+++|++|+++++. +.+. ....+..+++|++|+++++. +++.
T Consensus 63 ~~~~~----~~~~l~~L~l~~n~-l~~~~-~~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~ 133 (336)
T 2ast_B 63 VTGRL----LSQGVIAFRCPRSF-MDQPL-AEHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDP 133 (336)
T ss_dssp HHHHH----HHTTCSEEECTTCE-ECSCC-CSCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHH
T ss_pred HHHhh----hhccceEEEcCCcc-ccccc-hhhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHH
Confidence 22211 22566666666542 11111 1122 46777777777763 5544 33445567777777777753 5555
Q ss_pred hHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeeccc-CCCCCCc-cccccCC-CCCeeeecCCC-CCChH
Q 012207 167 GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCL-PPVVKLQ-YLEDLVLEGCH-GIDDD 242 (468)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~-~L~~L~l~~~~-~~~~~ 242 (468)
....+.. +++|++|++++|..+++..+......+++|++|++++| .+++..+ ..+..++ +|++|++++|. .+.+.
T Consensus 134 ~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 134 IVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 5555544 77777777777656666666666667777777777777 6654332 2344577 77777777764 45555
Q ss_pred HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHH
Q 012207 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA 322 (468)
Q Consensus 243 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 322 (468)
.+......+++|++|+++++..+++..... +..+++|++|++++|....+.....+..+++|++|++.+| +++..+..
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~ 290 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQL 290 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHH
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHH
Confidence 555555458888888888887555444433 4567889999998887666666667788999999999998 88878887
Q ss_pred HHHhCCCCCeEecccCCCCC
Q 012207 323 IGNWHGSLKELSLSKCSGVT 342 (468)
Q Consensus 323 l~~~~~~L~~L~l~~~~~~~ 342 (468)
+...++. |++++ +.++
T Consensus 291 l~~~l~~---L~l~~-n~l~ 306 (336)
T 2ast_B 291 LKEALPH---LQINC-SHFT 306 (336)
T ss_dssp HHHHSTT---SEESC-CCSC
T ss_pred HHhhCcc---eEEec-ccCc
Confidence 7644444 45655 3444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.5e-28 Score=238.62 Aligned_cols=256 Identities=16% Similarity=0.147 Sum_probs=132.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCccc--------------
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-------------- 265 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-------------- 265 (468)
.+++|++|+++++.+. .....+..+++|++|+++++ .+.......+.. +++|++|+++++...
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN-KFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccC-CcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4556666666666554 23334455566666666653 233222222222 455555555544321
Q ss_pred -----------ChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEe
Q 012207 266 -----------SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 266 -----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (468)
........+..+++|++|+++++ .+....+..+..+++|++|++++|.+...........+++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 11000111233455555555544 222233344455556666666665544322222122456666666
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHH--HHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI--NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
++++ .++.. .+..+..+++|++|++++|. ++...+ ......+++|+.|++++|. ++......+. .+++|++|+
T Consensus 432 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~ 506 (606)
T 3t6q_A 432 LSHS-LLDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVD 506 (606)
T ss_dssp CTTC-CCBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEE
T ss_pred CCCC-ccCCc-CHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-cccCCCEEE
Confidence 6664 22221 12224456677777777665 222110 0122356777777777754 4332222233 677777788
Q ss_pred ccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++|.+++..+..+..+++| .|++++| .++... ......+++|+.|++++|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHHHHTSSEEECTTCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCC-cccccC-HhhcccCCCCCEEeCCCCC
Confidence 87777777776777777777 7777777 666422 2223357788888888886
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.1e-27 Score=234.96 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=132.9
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
+|+.|+++++.+.......+..+++|++|+++++ .+.... ..+. .+++|++|+++++...... ...+..+++|+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp-~~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELP-SGLV-GLSTLKKLVLSANKFENLC--QISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCC-SSCC-SCTTCCEEECTTCCCSBGG--GGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCC-hhhc-ccccCCEEECccCCcCcCc--hhhhhccCcCCE
Confidence 4566666666665555555778899999999995 444221 1233 3899999999988633221 123456778888
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEecccCCCCCHHHHHHH-----------
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFV----------- 349 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~----------- 349 (468)
|+++++..........+..+++|++|++++|.+.... ...+. .+++|++|+++++. +... .+..
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEE
Confidence 8887764322222233556666666666666654432 11222 44556666665532 2110 0111
Q ss_pred --------------HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHH--HHHhcCCCCCEEEc
Q 012207 350 --------------VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFV--LIGQQCQYLEELDI 413 (468)
Q Consensus 350 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l 413 (468)
+..+++|+.|++++|. ++... ......+++|++|++++|. ++...+. .....+++|+.|++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEEC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEEC
Confidence 2234455555555443 11111 1112245556666665543 2221110 11225566666666
Q ss_pred cCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.+++.....+..+++|+.|++++| +++......+ ..+++| .|++++|+
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEAL-SHLKGI-YLNLASNH 534 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGG-TTCCSC-EEECCSSC
T ss_pred CCCccCccChhhhccccCCCEEECCCC-ccCcCChhHh-Cccccc-EEECcCCc
Confidence 666666555555556666666666666 5554332222 356666 66666664
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=3.6e-28 Score=243.68 Aligned_cols=326 Identities=19% Similarity=0.163 Sum_probs=191.5
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+++|++|+++++. +.......+..+++|++|+++++......... .+++|++|+++++. ++......+...++
T Consensus 221 ~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~-l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENK-FTGEIPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSE-EEESCCCCSCTTCT
T ss_pred cCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCc-cCCccCHHHHhhcC
Confidence 45555555555552 33233344555555555555554321111000 25556666665542 11111111112346
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC-ccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD-YLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 281 (468)
+|++|++++|.+.......+.++++|++|+++++..........+.. +++|++|+++++...... ...+..++ +|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~ 371 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK-MRGLKVLDLSFNEFSGEL--PESLTNLSASLL 371 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT-CTTCCEEECCSSEEEECC--CTTHHHHTTTCS
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc-CCCCCEEeCcCCccCccc--cHHHHhhhcCCc
Confidence 67777777766655555666667777777777643221222233444 777777777766422110 01112223 677
Q ss_pred eEeecCCCCCchhHHHHhhc--CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 282 QLILAYSFWVSADLSKCLHN--FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
.|+++++. +.+..+..+.. +++|+.|++.+|.+.+..+..+. .+++|++|+++++. ++.. ++..+..+++|+.|
T Consensus 372 ~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 372 TLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNY-LSGT-IPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSE-EESC-CCGGGGGCTTCCEE
T ss_pred EEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCc-ccCc-ccHHHhcCCCCCEE
Confidence 77777662 33333333443 67888888888876654444444 67889999998853 3211 23335678899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|.... . +......+++|++|++++|. ++......+. .+++|++|++++|.+++..+..++.+++|+.|++++
T Consensus 448 ~L~~n~l~~-~-~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 448 KLWLNMLEG-E-IPQELMYVKTLETLILDFND-LTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp ECCSSCCCS-C-CCGGGGGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ECCCCcccC-c-CCHHHcCCCCceEEEecCCc-ccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 998876322 1 11223468899999998865 4322222233 789999999999998877777888899999999999
Q ss_pred CCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 440 CSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
| .++.. ++.....+++|+.|++++|+
T Consensus 524 N-~l~~~-~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 524 N-SFSGN-IPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp S-CCEEE-CCGGGGGCTTCCEEECCSSE
T ss_pred C-cccCc-CCHHHcCCCCCCEEECCCCc
Confidence 9 77632 33344578999999999885
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.2e-28 Score=243.21 Aligned_cols=255 Identities=20% Similarity=0.150 Sum_probs=151.1
Q ss_pred CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
+++|++|++++|.+.+.....+.++++|++|+++++. +.......+.. +++|+.|+++++..... +...+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGS-LSKLRDLKLWLNMLEGE--IPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhc-CCCCCEEECCCCcccCc--CCHHHcCCCCc
Confidence 3455555555555444444455566666666666642 22222222333 66777777766653211 11224456677
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.|+++++ .+....+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++| .+... ++..+..+++|+.|+
T Consensus 469 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN-SFSGN-IPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS-CCEEE-CCGGGGGCTTCCEEE
T ss_pred eEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC-cccCc-CCHHHcCCCCCCEEE
Confidence 77777776 34445555667777777777777776654444443 5677777777774 33211 233355677777777
Q ss_pred cCCCCCC---CHHHHH----------------------------------------------------------------
Q 012207 361 ITCCRKI---TYASIN---------------------------------------------------------------- 373 (468)
Q Consensus 361 l~~~~~~---~~~~~~---------------------------------------------------------------- 373 (468)
+++|... ......
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 7766421 000000
Q ss_pred -HHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 374 -SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 374 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
.....+++|+.|+++++. ++......+. .+++|+.|++++|.++...+..++.+++|+.|++++| +++.. ++...
T Consensus 625 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g~-ip~~l 700 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNM-LSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGR-IPQAM 700 (768)
T ss_dssp CCSCSSSBCCCEEECCSSC-CBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEEC-CCGGG
T ss_pred chhhhccccccEEECcCCc-ccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccCc-CChHH
Confidence 001124667788887744 4322222333 7788888888888888777778888888888888888 77642 33444
Q ss_pred hcCcccCeeecCCCC
Q 012207 453 STCSMLKELDLYRFS 467 (468)
Q Consensus 453 ~~~~~L~~L~l~~c~ 467 (468)
..+++|+.|++++|+
T Consensus 701 ~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 701 SALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCCCCSEEECCSSE
T ss_pred hCCCCCCEEECcCCc
Confidence 578888888888874
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=197.66 Aligned_cols=237 Identities=19% Similarity=0.179 Sum_probs=138.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.+. ..+..+++|++|++++|........ +.. +++|++|++.++....... +..+++
T Consensus 108 ~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~~~--~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~ 178 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSP--LSN-MTGLNYLTVTESKVKDVTP----IANLTD 178 (347)
T ss_dssp TCTTCSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCCGG--GTT-CTTCCEEECCSSCCCCCGG----GGGCTT
T ss_pred CCCcCCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccccc--hhh-CCCCcEEEecCCCcCCchh----hccCCC
Confidence 445555555555544321 2244455555555555433322111 222 5555555555554222111 344556
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. .... .+..+++|+.|++.++.+.+... ...+++|++|++++| .+++. .. +..+++|++|
T Consensus 179 L~~L~l~~n~l-~~~~--~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L 248 (347)
T 4fmz_A 179 LYSLSLNYNQI-EDIS--PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDL--SP-LANLSQLTWL 248 (347)
T ss_dssp CSEEECTTSCC-CCCG--GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEE
T ss_pred CCEEEccCCcc-cccc--cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCC--cc-hhcCCCCCEE
Confidence 66666655532 1111 15566777777777776654433 225677777777774 33321 11 4567788888
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|. ++.. .....+++|++|++++|. ++.. ..+ ..+++|+.|++++|.+++.....+..+++|+.|++++
T Consensus 249 ~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCC--GGG-GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred ECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCC--hhh-cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 887775 3322 123467888888888764 4432 222 3778888888888888888777788888888888888
Q ss_pred CCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 440 CSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
| .++.. .. ...+++|+.|++++|+
T Consensus 321 n-~l~~~--~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 N-HITDI--RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp S-SCCCC--GG-GGGCTTCSEESSSCC-
T ss_pred C-ccccc--cC-hhhhhccceeehhhhc
Confidence 8 67642 22 4578888888888886
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.9e-26 Score=222.29 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +.......+ ..+++|++|+++++ .+.......++.++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHG---DLRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSS---TTSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChh---hhhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCC-ccCccCHHHhccCC
Confidence 689999999874 3322111 23567899999998864 332222223 37899999999988 45655556788999
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+|++|+++++. +...+.......+++|++|+++++..++..+.. ....+++|++|+++++.+.......+..+++|++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999999875 332111112334889999999887534432211 2346889999999998877666666767777777
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
|+++++. ..... ..+...+++|+.|+++++.
T Consensus 177 L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLSE-SAFLL-EIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECSB-STTHH-HHHHHSTTTBSEEEEESCB
T ss_pred EecccCc-ccccc-hhhHhhcccccEEEccCCc
Confidence 7777643 33222 2222336666666666553
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.3e-23 Score=191.36 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=135.5
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|+.|+++++.... .+..+..+++|++|+++++. +..... +. .+++|++|+++++....... +..+++
T Consensus 130 ~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~-~l~~L~~L~l~~n~l~~~~~----~~~l~~ 200 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK-VKDVTP--IA-NLTDLYSLSLNYNQIEDISP----LASLTS 200 (347)
T ss_dssp TCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSC-CCCCGG--GG-GCTTCSEEECTTSCCCCCGG----GGGCTT
T ss_pred cCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCC-cCCchh--hc-cCCCCCEEEccCCccccccc----ccCCCc
Confidence 45555555555552221 22334555566666665533 221111 22 25666666666554222111 445566
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. ..... +..+++|++|++++|.+.+... ...+++|++|+++++ .+++. ..+..+++|+.|
T Consensus 201 L~~L~l~~n~l-~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 270 (347)
T 4fmz_A 201 LHYFTAYVNQI-TDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKML 270 (347)
T ss_dssp CCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEE
T ss_pred cceeecccCCC-CCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEE
Confidence 66666666532 22211 5677788888888887665443 236788888888875 44431 235577899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|. +++. .....+++|+.|++++|. ++......+. .+++|+.|++++|.+++... +..+++|+.|++++
T Consensus 271 ~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 271 NVGSNQ-ISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred EccCCc-cCCC---hhhcCCCCCCEEECcCCc-CCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 999886 4432 123578999999999965 6666666665 89999999999999988654 77899999999999
Q ss_pred CCccC
Q 012207 440 CSNIT 444 (468)
Q Consensus 440 ~~~l~ 444 (468)
| .++
T Consensus 343 N-~i~ 346 (347)
T 4fmz_A 343 Q-VIK 346 (347)
T ss_dssp C----
T ss_pred h-ccc
Confidence 9 554
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.7e-27 Score=233.77 Aligned_cols=207 Identities=17% Similarity=0.124 Sum_probs=124.1
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|++|+++++...........+..+++|+.|+++++. +. ..+..+..+++|+.|++++|.+...........+++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 455555555554422111112334556667777776653 22 1224455667777777777765544331122256778
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++. +... .+..+..+++|++|++++|. ++...+......+++|++|++++|. ++......+. .+++|++
T Consensus 427 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~ 501 (606)
T 3vq2_A 427 LYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQL 501 (606)
T ss_dssp CEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred CEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-ccccCCE
Confidence 888887753 3221 12234567788888888775 3321112223467888888888864 4433222233 7788888
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCc-ccCeeecCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYRFS 467 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~ 467 (468)
|++++|.+++..+..+..+++|+.|++++| +++. ++.....+| +|+.|++.+|+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~--~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIET--SKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCC--EESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcc--cCHhHhhhcccCcEEEccCCC
Confidence 888888888876677778888888888888 6763 333244566 58888888876
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.5e-23 Score=198.41 Aligned_cols=341 Identities=19% Similarity=0.190 Sum_probs=193.9
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.+++.++.- .. ++....+++|++|+++++. +.... . ...+++|++|+++++. +.... .+..++
T Consensus 46 ~~l~~L~l~~~~i-~~-----l~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KS-----IDGVEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQ-IADIT--PLANLT 112 (466)
T ss_dssp HTCCEEECCSSCC-CC-----CTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCG--GGTTCT
T ss_pred ccccEEecCCCCC-cc-----CcchhhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCc-cccCh--hhcCCC
Confidence 4566666665431 11 1122445677777777654 22111 1 3367777777777663 33322 166677
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+|++|+++++. +..... ...+++|++|+++++. +...+ ....+++|+.|++.+. +. ....+.++++|++
T Consensus 113 ~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~~-~~--~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDIS---ALSGLTSLQQLSFGNQ-VT--DLKPLANLTTLER 181 (466)
T ss_dssp TCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCG---GGTTCTTCSEEEEEES-CC--CCGGGTTCTTCCE
T ss_pred CCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCCh---hhccCCcccEeecCCc-cc--CchhhccCCCCCE
Confidence 77777777654 222211 2336777777777653 33221 1346677777777532 22 2233666777777
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEe
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 310 (468)
|+++++. +.... .+.. +++|++|+++++....... ...+++|+.|+++++.... . ..+..+++|++|++
T Consensus 182 L~l~~n~-l~~~~--~l~~-l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 182 LDISSNK-VSDIS--VLAK-LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDL 250 (466)
T ss_dssp EECCSSC-CCCCG--GGGG-CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEEC
T ss_pred EECcCCc-CCCCh--hhcc-CCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEEC
Confidence 7777643 33221 2333 6777777777665332221 3456777777777663222 1 34566777777777
Q ss_pred cCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCC
Q 012207 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (468)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (468)
++|.+..... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|
T Consensus 251 ~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLAP--L-SGLTKLTELKLGAN-QISNI--SP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCGG--G-TTCTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS
T ss_pred CCCccccchh--h-hcCCCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC
Confidence 7777654432 2 25677777777774 33321 11 4466777777777765 322111 346777777777775
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
. +++... + ..+++|+.|++++|.+++. ..+..+++|+.|++++| .+++.. . ...+++|+.|++++|+
T Consensus 320 ~-l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 N-ISDISP--V-SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLT--P-LANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CSCCGG--G-GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCG--G-GTTCTTCCEEECCCEE
T ss_pred c-CCCchh--h-ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccc--h-hhcCCCCCEEeccCCc
Confidence 4 332211 2 2677777777777777664 35667777777777777 665422 2 4467777777777763
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.6e-26 Score=216.28 Aligned_cols=352 Identities=14% Similarity=0.132 Sum_probs=151.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
+++++|+++++. +...... ....+++|++|+++++....... ...+..+++|++|+++++. +.......+..++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCT-TCEECTTTTTTCT
T ss_pred CccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCc-cCccChhhccCcc
Confidence 456666666553 2221111 12345666666666553211111 1122356666666666653 3333334455566
Q ss_pred CCCeEeccCCcccChHhHHH-HHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccC--CC
Q 012207 151 NLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--QY 227 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~ 227 (468)
+|++|+++++. ++...... ....+++|++|+++++. ++......+...+++|++|+++++.+.......+..+ ++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 66666666653 22211111 12235666666666642 2222111223355666666666665554444444432 45
Q ss_pred CCeeeecCCCCCChHHH--------HHHHhcCCCCCEEEccCCcccChhhHHHHHh--cCCccceEeecCCCCCchhH--
Q 012207 228 LEDLVLEGCHGIDDDGL--------ASVEYSCKSLKALNLSKCQNISHVGLSSLIK--GADYLQQLILAYSFWVSADL-- 295 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~~--------~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-- 295 (468)
|+.|+++++. +..... ..+. .+++|++|+++++. +.......+.. ..++|+.|+++++.......
T Consensus 182 L~~L~l~~n~-l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 182 FTLLRLSSIT-LQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp EEEEECTTCB-CTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccCc-ccccchhhcccccccccc-ccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccch
Confidence 6666665532 211100 0011 13556666666654 22221122211 12556666665542211000
Q ss_pred -------HHHhh--cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCC
Q 012207 296 -------SKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366 (468)
Q Consensus 296 -------~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 366 (468)
...+. ..++|+.|++++|.+.......+. .+++|++|+++++ .++.. .+..+..+++|++|++++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQN-EINKI-DDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCC-ccccc-ChhHhcCcccCCEEECCCCc-
Confidence 00000 123555555555554433222222 3455555555553 22211 01122344555555555543
Q ss_pred CCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++.... .....+++|++|++++|. ++......+. .+++|++|++++|.++......+..+++|+.|++++|
T Consensus 335 l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 335 LGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEECG-GGGTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCh-hHhcCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 221111 111234555555555532 3222112222 4455555555555555443333444555555555555
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.8e-25 Score=211.55 Aligned_cols=367 Identities=15% Similarity=0.099 Sum_probs=217.2
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +....... ...+++|++|+++++. +..... ..+..+++|++|+++++ .+...+.. .++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSD---ILSLSKLRILIISHNR-IQYLDI-SVFKFNQELEYLDLSHN-KLVKISCH---PTV 90 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHH---HTTCTTCCEEECCSSC-CCEEEG-GGGTTCTTCCEEECCSS-CCCEEECC---CCC
T ss_pred ccccEEECCCCc-ccccChhh---ccccccccEEecCCCc-cCCcCh-HHhhcccCCCEEecCCC-ceeecCcc---ccC
Confidence 689999999875 33221111 2456899999998875 332222 23347899999999988 45543322 789
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc--cEeeecccCC--CCCCccccc---
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (468)
+|++|+++++. +....+......+++|++|+++++ .++... ...+++| +.|+++++.+ .......+.
T Consensus 91 ~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 91 NLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CccEEeccCCc-cccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence 99999999875 332112122234899999999986 455422 3466777 9999998866 333222222
Q ss_pred -----------------------cCCCCCeeeecCCCC---CC--hHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHh
Q 012207 224 -----------------------KLQYLEDLVLEGCHG---ID--DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (468)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~---~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (468)
++++|+.++++++.. .. ...+..+.. +++|+.|++.++. +....+..+..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT-NPKLSNLTLNNIE-TTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG-CTTCCEEEEEEEE-EEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc-ccchhhccccccc-cCHHHHHHHHH
Confidence 356666666666320 00 001112222 4555555554432 11111111110
Q ss_pred --cCCccceEeecCCC-----------------------------C-CchhHHHH----------------------hhc
Q 012207 276 --GADYLQQLILAYSF-----------------------------W-VSADLSKC----------------------LHN 301 (468)
Q Consensus 276 --~~~~L~~L~l~~~~-----------------------------~-~~~~~~~~----------------------l~~ 301 (468)
..++|++|+++++. . +....... ...
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 11233333333221 1 00000111 156
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCH-HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
+++|++|++++|.+.+..+..+. .+++|++|+++++ .++. ..++..+..+++|++|++++|........ .....++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~ 399 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTK 399 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCT
T ss_pred CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCc
Confidence 77888888888887764444443 6788888888885 4543 23455667788888888888763221211 1123568
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHH-HHhcCccc
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSML 458 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L 458 (468)
+|++|++++|. ++..... .+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++. ....+++|
T Consensus 400 ~L~~L~Ls~N~-l~~~~~~----~l~~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L 470 (520)
T 2z7x_B 400 SLLSLNMSSNI-LTDTIFR----CLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASN-QLKS--VPDGIFDRLTSL 470 (520)
T ss_dssp TCCEEECCSSC-CCGGGGG----SCCTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSS-CCCC--CCTTTTTTCTTC
T ss_pred cCCEEECcCCC-CCcchhh----hhcccCCEEECCCCcccccc-hhhhcCCCCCEEECCCC-cCCc--cCHHHhccCCcc
Confidence 88888888854 5433222 23 68999999999888433 44558899999999999 7774 332 24578899
Q ss_pred CeeecCCCC
Q 012207 459 KELDLYRFS 467 (468)
Q Consensus 459 ~~L~l~~c~ 467 (468)
+.|++++|+
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999999886
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=8e-23 Score=193.36 Aligned_cols=320 Identities=17% Similarity=0.169 Sum_probs=237.0
Q ss_pred cCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCC
Q 012207 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (468)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (468)
.++++.|++.++.... ++.+ ..+++|++|+++++. +.+.. .+..+++|++|++.++....... ...+++
T Consensus 45 l~~l~~L~l~~~~i~~---l~~~-~~l~~L~~L~Ls~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---IDGV-EYLNNLTQINFSNNQ-LTDIT--PLKNLTKLVDILMNNNQIADITP----LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCCC---CTTG-GGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSCCCCCGG----GTTCTT
T ss_pred hccccEEecCCCCCcc---Ccch-hhhcCCCEEECCCCc-cCCch--hhhccccCCEEECCCCccccChh----hcCCCC
Confidence 4789999998764222 2233 379999999999984 55443 27889999999999875333222 345999
Q ss_pred CcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEE
Q 012207 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (468)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (468)
|++|+++++. ++..+. ...+++|++|+++++.+.+ +..+..+++|++|.+.+ .+.... .+.. +++|+.|
T Consensus 114 L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~--~~~~~~--~~~~-l~~L~~L 182 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN--QVTDLK--PLAN-LTTLERL 182 (466)
T ss_dssp CCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEEE--SCCCCG--GGTT-CTTCCEE
T ss_pred CCEEECCCCC-CCCChH---HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecCC--cccCch--hhcc-CCCCCEE
Confidence 9999999974 444322 4689999999999997764 44678899999999975 222221 2444 8999999
Q ss_pred EccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc
Q 012207 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (468)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (468)
+++++...... .+..+++|++|+++++.. ....+ +..+++|+.|++++|.+.+.. .+ ..+++|++|++++
T Consensus 183 ~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 183 DISSNKVSDIS----VLAKLTNLESLIATNNQI-SDITP--LGILTNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLAN 252 (466)
T ss_dssp ECCSSCCCCCG----GGGGCTTCSEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCG--GG-GGCTTCSEEECCS
T ss_pred ECcCCcCCCCh----hhccCCCCCEEEecCCcc-ccccc--ccccCCCCEEECCCCCcccch--hh-hcCCCCCEEECCC
Confidence 99998743321 256789999999998843 33222 678999999999999887642 23 2689999999998
Q ss_pred CCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 012207 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE 417 (468)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (468)
+. ++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|. ++... .+ ..+++|+.|++++|.
T Consensus 253 n~-l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~-~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 253 NQ-ISNL--AP-LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS--PI-SNLKNLTYLTLYFNN 320 (466)
T ss_dssp SC-CCCC--GG-GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG--GG-GGCTTCSEEECCSSC
T ss_pred Cc-cccc--hh-hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch--hh-cCCCCCCEEECcCCc
Confidence 64 4432 22 5678999999999986 332221 4578999999999965 43322 23 389999999999999
Q ss_pred CChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 418 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++... +..+++|+.|++++| .+++. . ....+++|+.|++++|+
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred CCCchh--hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc
Confidence 988654 678999999999999 88753 3 34589999999999986
No 20
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=8.6e-23 Score=185.03 Aligned_cols=242 Identities=16% Similarity=0.231 Sum_probs=123.6
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
..++.++++++ .+.+..+..+ ..++++.|++.++.+.... ..+..+++|++|+++++. +.+..+......+++|+
T Consensus 47 ~~~~~l~l~~~-~~~~~~~~~~--~~~~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGK-NLHPDVTGRL--LSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTC-BCCHHHHHHH--HHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccc-cCCHHHHHhh--hhccceEEEcCCccccccc-hhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 45888999875 4454333322 1278999999888665433 234466777777777743 45443443344466666
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHHhCCCCCeEe
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~ 334 (468)
+|+++++. +.+ ..+..+..+++|++|++++| .+++..+..+...+++|++|+
T Consensus 122 ~L~L~~~~-l~~--------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 122 NLSLEGLR-LSD--------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp EEECTTCB-CCH--------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred EEeCcCcc-cCH--------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 66666654 332 33333344444444444444 344433333333445555555
Q ss_pred cccCCCCCHHHHHHHHHhCC-CCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 335 LSKCSGVTDEELSFVVQSHK-ELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
+++|..+++.++...+..++ +|++|++++|. .+++..+......+++|++|++++|..+++.....+. .+++|++|+
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~ 253 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS 253 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEE
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEee
Confidence 55543444444444444455 55555555543 3444444444444555555555554444444444333 445555555
Q ss_pred ccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 413 ITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 413 l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
+++| .+++.++..+.++++|+.|++++| +++.++..+.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHH
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHH
Confidence 5554 344444444444555555555554 4444444443
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-26 Score=224.89 Aligned_cols=183 Identities=17% Similarity=0.091 Sum_probs=114.9
Q ss_pred cCCccceEeecCCCCCchh--HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhC
Q 012207 276 GADYLQQLILAYSFWVSAD--LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH 353 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 353 (468)
.+++|+.|+++++. +... .+..+..+++|++|++++|.+...... + ..+++|++|+++++. +........+..+
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 420 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-LGLEQLEHLDFQHSN-LKQMSEFSVFLSL 420 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-ETCTTCCEEECTTSE-EESCTTSCTTTTC
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccccccc-c-cccCCCCEEEccCCc-cccccchhhhhcC
Confidence 34555556655542 2211 134455666777777776654432221 1 246677777777642 2211111124567
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|++|++++|.. ... .......+++|++|++++|. +++..+......+++|+.|++++|.+++..+..+..+++|+
T Consensus 421 ~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 421 RNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCCEEECTTSCC-EEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEeCcCCcc-ccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 8888888888752 211 11223468899999998865 33222223333789999999999999988777788899999
Q ss_pred EEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 434 SLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.|++++| +++... ......+++|+.|++++|+
T Consensus 498 ~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASN-QLKSVP-DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCC-cCCCCC-HHHhhcccCCcEEEecCCc
Confidence 9999999 777532 2234578999999999986
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.4e-26 Score=222.71 Aligned_cols=346 Identities=15% Similarity=0.145 Sum_probs=217.8
Q ss_pred cccCCccEEecCCCCcccHH----------------HHHHhhh--cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEec
Q 012207 96 SWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWL 157 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 157 (468)
..+++|++|+++++. +... .++.... .+++|++|+++++...+..+ ..+.++++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEEC
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEEC
Confidence 456778888887765 3331 1333333 67888888888774333332 56777888888888
Q ss_pred cCCcccCh-HhHHHHHh-----cCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCee
Q 012207 158 ARCKLITD-LGIGRIAA-----CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDL 231 (468)
Q Consensus 158 ~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 231 (468)
+++..++. .....+.. .+++|++|+++++. ++..+.......+++|++|++++|.+.+... .+..+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 88653443 22222222 24788888888763 4322211144577888888888887763333 66777888888
Q ss_pred eecCCCCCChHHHHHHHhcCCC-CCEEEccCCcccChhhHHHHHhc--CCccceEeecCCCCCchhHHHHhh-------c
Q 012207 232 VLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKG--ADYLQQLILAYSFWVSADLSKCLH-------N 301 (468)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~-------~ 301 (468)
+++++ .+... ...+.. +++ |+.|+++++... . +...+.. +++|+.|+++++ .+....+..+. .
T Consensus 359 ~L~~N-~l~~l-p~~l~~-l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 359 NLAYN-QITEI-PANFCG-FTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp ECCSS-EEEEC-CTTSEE-ECTTCCEEECCSSCCS-S--CCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCC
T ss_pred ECCCC-ccccc-cHhhhh-hcccCcEEEccCCcCc-c--cchhhhhcccCccCEEECcCC-cCCCcchhhhccccccccc
Confidence 88874 33311 122333 677 888988887632 1 1111222 347888888887 44444444455 6
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHH-HHHh-------CCCCCeEecCCCCCCCHHHHH
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF-VVQS-------HKELRKLDITCCRKITYASIN 373 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~-~~~~-------~~~L~~L~l~~~~~~~~~~~~ 373 (468)
+++|++|++++|.+.. ....+...+++|++|+++++ .++. ++. .+.. +++|+.|++++|. ++ .+.
T Consensus 432 ~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp 504 (636)
T 4eco_A 432 GINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGN-MLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LT--KLS 504 (636)
T ss_dssp CCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSS-CCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CC--BCC
T ss_pred CCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCC-CCCC--cCHHHhccccccccccCCccEEECcCCc-CC--ccC
Confidence 6789999999988773 33344446789999999884 4441 211 1111 1289999998876 44 222
Q ss_pred HHHh--cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc------CCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 374 SITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT------ENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 374 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
.... .+++|+.|+++++. ++. ++.....+++|+.|+++ +|.+....+..+..+++|+.|++++| .++.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ 580 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRK 580 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCc
Confidence 3333 68899999998854 443 22222378899999994 46666666667778899999999999 7753
Q ss_pred HHHHHHHhcCcccCeeecCCCC
Q 012207 446 EGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 446 ~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.. -.++|+.|++++|+
T Consensus 581 --ip~~--~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 581 --VNEK--ITPNISVLDIKDNP 598 (636)
T ss_dssp --CCSC--CCTTCCEEECCSCT
T ss_pred --cCHh--HhCcCCEEECcCCC
Confidence 3322 23789999999886
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=4.5e-25 Score=219.44 Aligned_cols=330 Identities=18% Similarity=0.131 Sum_probs=177.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHH-------HH
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVE-------LV 197 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~ 197 (468)
++|++|+++++. +.......+..+++|++|+++++. +.......+ ..+++|+.|++.++......... ..
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 248 TNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEeccchhhhcccccccccccChhh
Confidence 347777776662 333333445566777777776653 222111111 22666666666543211111000 01
Q ss_pred HhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCC---------------------------CCChHHHHHHHhc
Q 012207 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH---------------------------GIDDDGLASVEYS 250 (468)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~~ 250 (468)
...+++|++|+++++.+.......+..+++|++|+++++. .+.......+..
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~- 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW- 403 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-
Confidence 2356677777777666655444455566666666666532 111111112222
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCCh--hHHHHHHHhCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHG 328 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~ 328 (468)
+++|+.|+++++...... ....+..+++|+.|+++++. +.......+..+++|+.|++.++.+.. ..+..+ ..++
T Consensus 404 l~~L~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~-~~l~ 480 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQEL-TGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF-QPLR 480 (680)
T ss_dssp CTTCCEEECCSSCCEEEC-CSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT-TTCT
T ss_pred CCCCCEEeCCCCcCcccc-CcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCccc-ccCC
Confidence 455555555554321100 00113345555566555542 222223344455666666666655431 111112 2567
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHH-------HHHhcCCcCCeEEccCCCCCCHHHHHHH
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN-------SITKTCTSLTSLRMECCKLVSWEAFVLI 401 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 401 (468)
+|+.|+++++ .++.. ....+..+++|+.|++++|. ++..... .....+++|+.|+++++. ++......+
T Consensus 481 ~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 481 NLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 7888888774 34321 12234567788888888775 3321100 012467888888888753 442211122
Q ss_pred HhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
..+++|+.|++++|.++......+..+++|+.|++++| +++......+...+++|+.|++.+|+
T Consensus 557 -~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 557 -KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred -ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 37888999999988888766666778899999999999 88764433333367899999999887
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2.2e-24 Score=214.41 Aligned_cols=308 Identities=18% Similarity=0.156 Sum_probs=167.8
Q ss_pred HhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHH
Q 012207 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAA 145 (468)
Q Consensus 66 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 145 (468)
.+..+++|+.|+++++. +...... ....+++|++|+++++. +.... ...+..+++|++|+++++. +.......
T Consensus 44 ~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNT-ISKLEPE---LCQKLPMLKVLNLQHNE-LSQLS-DKTFAFCTNLTELHLMSNS-IQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSC-CCCCCTT---HHHHCTTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSC-CCCCCSCT
T ss_pred HHhCCCcCcEEECCCCc-cCccCHH---HHhcccCcCEEECCCCc-cCccC-hhhhccCCCCCEEECCCCc-cCccChhH
Confidence 45666777777777653 2211111 12345777777777653 22111 1122367778888887763 44333345
Q ss_pred HHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHH-HhhCCCccEeeecccCCCCCCcccccc
Q 012207 146 IAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV-ALKCQEIRTLDLSYLPITEKCLPPVVK 224 (468)
Q Consensus 146 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (468)
+..+++|++|+++++. +.......+ ..+++|++|+++++. ++......+ ...+++|++|+++++.+.......+..
T Consensus 117 ~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNG-LSSTKLGTQ-VQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCCCSS-SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred ccccCCCCEEECCCCc-ccccCchhh-cccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 6677788888887754 222111111 237788888887753 332222222 124578888888888776655566667
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHh--cCCCCCEEEccCCcccChhhHHHHHhcC--CccceEeecCCCCCchhHHHHhh
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLSKCLH 300 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~ 300 (468)
+++|+.+.+.++ .+.......+.. ..++|+.|+++++...... ...+..+ ++|+.|+++++ .+....+..+.
T Consensus 194 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFA 269 (680)
T ss_dssp SSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGGSCCCEEECTTS-CCCEECTTTTT
T ss_pred hhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCcCCCCEEECCCC-CcCccCccccc
Confidence 777777777763 333333222221 2477888888876522111 0112222 34888888877 34444445567
Q ss_pred cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHH---HHHH----HHHhCCCCCeEecCCCCCCCHHHHH
Q 012207 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSF----VVQSHKELRKLDITCCRKITYASIN 373 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (468)
.+++|++|++++|.+.......+. .+++|+.|+++++...... .++. .+..+++|++|++++|. ++... .
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~ 346 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-S 346 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-T
T ss_pred CcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-h
Confidence 788888888888876654433333 5677777777653211100 0110 23356677777777664 22211 1
Q ss_pred HHHhcCCcCCeEEccCC
Q 012207 374 SITKTCTSLTSLRMECC 390 (468)
Q Consensus 374 ~~~~~~~~L~~L~l~~~ 390 (468)
.....+++|++|++++|
T Consensus 347 ~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTTTTCTTCCEEECTTC
T ss_pred hHhccccCCcEEECCCC
Confidence 11235667777777654
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.1e-26 Score=223.93 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=80.1
Q ss_pred cCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 301 NFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
.+++|++|++++|.+.... ...+. .+++|++|+++++. +.. ++..+..+++|+.|++++|.... .........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSEEES-TTTTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCccCC-ccChhhhhc
Confidence 4444555555544433221 12222 44555555555532 211 11123344566666665554211 111012235
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcc
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (468)
+++|++|++++|. ++......+. .+++|++|++++|.+++. ....+..+++|+.|++++| .++... ......+++
T Consensus 423 l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~ 498 (606)
T 3vq2_A 423 LEKLLYLDISYTN-TKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDTLHR 498 (606)
T ss_dssp CTTCCEEECTTSC-CEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCTT
T ss_pred cccCCEEECcCCC-CCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhccccc
Confidence 6667777776644 2221111222 567777777777766653 3344566777788888777 666422 222346778
Q ss_pred cCeeecCCCC
Q 012207 458 LKELDLYRFS 467 (468)
Q Consensus 458 L~~L~l~~c~ 467 (468)
|++|++++|+
T Consensus 499 L~~L~Ls~N~ 508 (606)
T 3vq2_A 499 LQLLNMSHNN 508 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888887775
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=9.8e-25 Score=206.46 Aligned_cols=356 Identities=15% Similarity=0.056 Sum_probs=244.2
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+++++|+++++. +....... +..+++|++|+++++..........+..+++|++|+++++. +.......+ ..++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF-NGLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT-TTCT
T ss_pred CCCccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc-cCcc
Confidence 34889999999864 33322223 34899999999999854334334567889999999999875 333222222 3389
Q ss_pred CCcEEeccCCCCCChHHH-HHHHhhCCCccEeeecccCCCCCCccc-cccCCCCCeeeecCCCCCChHHHHHHHh-cCCC
Q 012207 177 KLKLLCLKWCIRVTDLGV-ELVALKCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEY-SCKS 253 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~ 253 (468)
+|++|+++++. ++...+ ......+++|++|++++|.+....... +.++++|++|+++++. +.......+.. ..++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 99999999974 443322 223457899999999999887665555 7789999999999853 43322222222 1378
Q ss_pred CCEEEccCCcccChhh--H--H--HHHhcCCccceEeecCCCCCchhHHHHhhc---CCCCCeeEecCCcCChhHH----
Q 012207 254 LKALNLSKCQNISHVG--L--S--SLIKGADYLQQLILAYSFWVSADLSKCLHN---FPMLQSIKFEDCPVARSGI---- 320 (468)
Q Consensus 254 L~~L~l~~~~~~~~~~--~--~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~---- 320 (468)
|+.|+++++....... + . ......++|+.|+++++ .+....+..+.. .++|+.|.+.++......+
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 9999999876322110 0 0 01224578999999998 455555555543 4899999999874332110
Q ss_pred ------HHHH-HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCC
Q 012207 321 ------KAIG-NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLV 393 (468)
Q Consensus 321 ------~~l~-~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 393 (468)
..+. ...++|++|+++++ .++.. .+..+..+++|+.|++++|. ++.... .....+++|++|++++|. +
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-C
T ss_pred hccCcccccccccccCceEEEecCc-ccccc-chhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-c
Confidence 0000 02478999999985 44432 23345678999999999986 443221 123468999999999964 5
Q ss_pred CHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 394 SWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 394 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+......+. .+++|++|++++|.+++.....+..+++|+.|++++| +++.... .....+++|+.|++++|+
T Consensus 336 ~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 336 GSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 443333333 7899999999999999887788889999999999999 8875222 234589999999999986
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.2e-23 Score=202.13 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=127.3
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+++++|+++++. +.......+ ..+++|++|+++++ .+......++..+++|++|+++++. +.......+. .++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCc-cCccChhhh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhc-cCC
Confidence 34789999999875 333222233 48999999999998 4555554678889999999999975 4443333343 499
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccC-CCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
+|++|+++++. ++..+.......+++|++|+++++. +.......+.++++|++|+++++ .+.......+.. +++|+
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKS-IRDIH 175 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTT-CSEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhc-cccCc
Confidence 99999999874 4322222234578999999999986 43333346778999999999985 454433344554 88999
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCC
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF 289 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 289 (468)
+|++..+..... ...+...+++|+.|+++++.
T Consensus 176 ~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 176 HLTLHLSESAFL--LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEECSBSTTH--HHHHHHSTTTBSEEEEESCB
T ss_pred eEecccCccccc--chhhHhhcccccEEEccCCc
Confidence 999998763221 12334567888888887763
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.8e-24 Score=215.53 Aligned_cols=345 Identities=15% Similarity=0.135 Sum_probs=219.7
Q ss_pred cccCCccEEecCCCCcccHH----------------HHHHhhh--cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEec
Q 012207 96 SWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWL 157 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 157 (468)
..+++|++|+++++. +... .++.-.. .+++|+.|++++|...+..+ ..+..+++|++|++
T Consensus 445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 456788888888765 3331 1333322 68888899888875444333 56778888999998
Q ss_pred cCCcccCh-H---hHHHHH---hcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 158 ARCKLITD-L---GIGRIA---ACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 158 ~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+++..++. . .+..+. ..+++|+.|+++++. ++..+....+..+++|+.|++++|.+. .++.+..+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceE
Confidence 88753443 1 122222 235688899888863 443221114457888999999888776 3337778888999
Q ss_pred eeecCCCCCChHHHHHHHhcCCC-CCEEEccCCcccChhhHHHHHhcC--CccceEeecCCCCCchhHH---HHhh--cC
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLS---KCLH--NF 302 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~l~--~~ 302 (468)
|+++++. +.. ....+.. +++ |+.|+++++... . +...+... ++|+.|+++++.. ....+ ..+. .+
T Consensus 600 L~Ls~N~-l~~-lp~~l~~-l~~~L~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l-~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 600 LKLDYNQ-IEE-IPEDFCA-FTDQVEGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKG 672 (876)
T ss_dssp EECCSSC-CSC-CCTTSCE-ECTTCCEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCT-TTTSSSCSSCTTTCCC
T ss_pred EECcCCc-ccc-chHHHhh-ccccCCEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcC-CCccccchhhhccccC
Confidence 9988843 442 1122333 677 999999887632 1 11222222 3488888888743 22211 1122 33
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHH--------HhCCCCCeEecCCCCCCCHHHHHH
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--------QSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
++|+.|++++|.+.. .+..+...+++|+.|+++++ .++. ++... .++++|+.|++++|. ++ .+..
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~ 745 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSD 745 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCG
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCCCC-Cc--cchH
Confidence 489999999998873 33444446789999999885 4441 22211 122389999999885 44 2223
Q ss_pred HHh--cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC------CCCChhhHHhcccCCCCCEEeeCCCCccCHH
Q 012207 375 ITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE------NEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 375 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (468)
... .+++|+.|++++|. ++. ++.....+++|+.|++++ |.+....+..+..+++|+.|++++| .++.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~- 820 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK- 820 (876)
T ss_dssp GGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB-
T ss_pred HhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc-
Confidence 333 68899999998854 443 222223789999999976 6666666667788999999999999 7653
Q ss_pred HHHHHHhcCcccCeeecCCCC
Q 012207 447 GLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 447 ~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.. -.++|+.|+|++|+
T Consensus 821 -Ip~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 821 -VDEK--LTPQLYILDIADNP 838 (876)
T ss_dssp -CCSC--CCSSSCEEECCSCT
T ss_pred -cCHh--hcCCCCEEECCCCC
Confidence 3322 24789999999986
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.4e-24 Score=208.87 Aligned_cols=367 Identities=14% Similarity=0.126 Sum_probs=202.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +...+.. .++
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMP---DISFLSELRVLRLSHNR-IRSLDF-HVFLFNQDLEYLDVSHNR-LQNISCC---PMA 121 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGG---GTTTCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECSC---CCT
T ss_pred CCcCEEECCCCC-ccccChh---hhccCCCccEEECCCCC-CCcCCH-HHhCCCCCCCEEECCCCc-CCccCcc---ccc
Confidence 567777777653 2211111 23455777777777653 222211 222367777777777763 4433211 577
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc--cEeeecccCC--CCCCccccc---
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (468)
+|++|+++++. +...........+++|++|+++++ .++...+ ..+++| +.|+++++.+ .......+.
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccCch----hhhhhceeeEEEeecccccccccCcccccccC
Confidence 77777777754 332111112223777888877775 3333221 234455 7777777655 332222222
Q ss_pred -----------------------cCCCCCeeeecCCCCCC---hHHHHHHHhcCCCCCEEEccCCcccChhhHHHHH--h
Q 012207 224 -----------------------KLQYLEDLVLEGCHGID---DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI--K 275 (468)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~ 275 (468)
.+++|+.++++++.... ......+.. .++|+.+++.++. +....+..+. .
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~-l~~~~~~~~~~~~ 273 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR-GPTLLNVTLQHIE-TTWKCSVKLFQFF 273 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEE-ECHHHHHHHHHHH
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-cCcceEEEecCCc-CcHHHHHHHHHhh
Confidence 24456666666532100 011112222 4555555444332 2221111111 0
Q ss_pred cCCccceEeecCCCCC---ch---------------------------hHHHHh----------------------hcCC
Q 012207 276 GADYLQQLILAYSFWV---SA---------------------------DLSKCL----------------------HNFP 303 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~---~~---------------------------~~~~~l----------------------~~~~ 303 (468)
..++|++|+++++... .. .....+ ..++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 1124444444333100 00 001111 5678
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCH-HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
+|++|++++|.+.+..+..+. .+++|++|+++++ .++. ..++..+..+++|+.|++++|. ++..........+++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTC
T ss_pred CceEEECCCCccccchhhhhc-ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccC
Confidence 888888888887765444443 6788899999884 4543 1234445677889999998876 3221011122357889
Q ss_pred CeEEccCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHH-HHhcCcccCe
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSMLKE 460 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~ 460 (468)
++|++++|. ++.... ..+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++. ....+++|+.
T Consensus 431 ~~L~l~~n~-l~~~~~----~~l~~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 431 LVLNLSSNM-LTGSVF----RCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASN-QLKS--VPDGVFDRLTSLQY 501 (562)
T ss_dssp CEEECCSSC-CCGGGG----SSCCTTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSS-CCCC--CCTTSTTTCTTCCC
T ss_pred CEEECCCCC-CCcchh----hhhcCcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCC-CCCC--CCHHHHhcCCCCCE
Confidence 999998854 553322 234 68999999999888543 33447889999999999 8874 333 2457899999
Q ss_pred eecCCCC
Q 012207 461 LDLYRFS 467 (468)
Q Consensus 461 L~l~~c~ 467 (468)
|++++|+
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999986
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=8.3e-25 Score=214.31 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=225.4
Q ss_pred HhhhcCCCCcEEEccCCCccCHH-----------------HHHHHH--cCCCCCeEeccCCcccChHhHHHHHhcCCCCc
Q 012207 119 SLTVNCRFLTEIDLSNGTEMGDA-----------------AAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLK 179 (468)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 179 (468)
.....+++|++|+++++. +... ....+. ++++|++|+++++....... .. ...+++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~-l~~l~~L~ 276 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TF-LKALPEMQ 276 (636)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TT-TTTCSSCC
T ss_pred HHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HH-HhcCCCCC
Confidence 334479999999999985 5552 234566 89999999999875333211 22 23489999
Q ss_pred EEeccCCCCCChHHHHHHHh------hCCCccEeeecccCCCCCCcc--ccccCCCCCeeeecCCCCCC-hHHHHHHHhc
Q 012207 180 LLCLKWCIRVTDLGVELVAL------KCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGID-DDGLASVEYS 250 (468)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~ 250 (468)
+|+++++..++...++.... .+++|++|++++|.+. .... .+.++++|++|+++++. +. ... .+..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~~~- 351 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AFGS- 351 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC--CCEE-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh--hhCC-
Confidence 99999985466522222222 3499999999999888 5555 68899999999999854 44 332 3443
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCc-cceEeecCCCCCchhHHHHhhcC--CCCCeeEecCCcCChhHHHHHHH--
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNF--PMLQSIKFEDCPVARSGIKAIGN-- 325 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~-- 325 (468)
+++|+.|+++++... .+...+..+++ |+.|+++++. +. .++..+... ++|+.|++++|.+....+..+..
T Consensus 352 l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 352 EIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 789999999988633 22223556778 9999999984 33 445455544 48999999999987654433320
Q ss_pred ----hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc-------CCcCCeEEccCCCCCC
Q 012207 326 ----WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT-------CTSLTSLRMECCKLVS 394 (468)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~ 394 (468)
.+++|++|+++++ .++.. -..++..+++|+.|++++|. ++.... ..... +++|+.|++++|. ++
T Consensus 427 ~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 501 (636)
T 4eco_A 427 PTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTSIDLRFNK-LT 501 (636)
T ss_dssp SSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCEEECCSSC-CC
T ss_pred cccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCccEEECcCCc-CC
Confidence 3468999999985 45421 12345568999999999986 442111 11111 2299999999965 55
Q ss_pred HHHHHHHH--hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC-----ccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 395 WEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 395 ~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.+.... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. ++.. .++.....+++|++|++++|+
T Consensus 502 --~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 502 --KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp --BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSC
T ss_pred --ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCCCCCEEECCCCc
Confidence 222222 278999999999999987 44667789999999996542 3332 133334579999999999996
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1e-24 Score=220.86 Aligned_cols=182 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
++|+.|+++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN-LLGEL-YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC-CCSCC-CSCSCSSCTTCC
T ss_pred CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC-CCCcc-CHHHhcCCCCCC
Confidence 44555555554 22222333344555555555555554433222222 4455555555553 22211 011123445555
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHH--------------HHHHhcCCCCCEEEccCCCCChhh-
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF--------------VLIGQQCQYLEELDITENEVNDEG- 422 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~- 422 (468)
.|++++|. +...... ....+++|+.|+++++. ++.... ..+.....+++.|++++|.+++..
T Consensus 342 ~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 342 YIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp EEECCSCC-CCCCCSS-CSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred EEECCCCC-CCccChh-hhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 55555543 2211100 11234555555555432 221000 001112334555555555554422
Q ss_pred HHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 423 LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 423 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
...+.++++|+.|++++| +++..........+++|+.|++++|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp HHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred hhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc
Confidence 223446777777777777 66532112223346777777777764
No 32
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.6e-20 Score=173.32 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=145.5
Q ss_pred cCCCCcEEeccCCCCCChHHHHHH---HhhCCCccEeeecccCCCC---CCccccccCCCCCeeeecCCCCCChHHHHHH
Q 012207 174 CCRKLKLLCLKWCIRVTDLGVELV---ALKCQEIRTLDLSYLPITE---KCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247 (468)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 247 (468)
.+++|++|+++++ .++..+...+ ...+++|++|+++++.+.. ..+..+. .....+
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~------------------~l~~~l 90 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------LLLQAL 90 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------HHHHHH
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH------------------HHHHHH
Confidence 3677777777775 4555544333 2356677777776653321 1111110 000011
Q ss_pred HhcCCCCCEEEccCCcccChh---hHHHHHhcCCccceEeecCCCCCchhH----HHHhhcC---------CCCCeeEec
Q 012207 248 EYSCKSLKALNLSKCQNISHV---GLSSLIKGADYLQQLILAYSFWVSADL----SKCLHNF---------PMLQSIKFE 311 (468)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~---------~~L~~L~l~ 311 (468)
. .+++|++|+++++. +... .+...+..+++|++|++++|. +.... ...+..+ ++|++|+++
T Consensus 91 ~-~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 91 L-KCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp T-TCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred h-hCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 1 24455555555443 2221 122233444555555555542 22221 1222233 777777777
Q ss_pred CCcCChhHHHHHH---HhCCCCCeEecccCCCCCHHHHHHHH----HhCCCCCeEecCCCCCCCHHHHH---HHHhcCCc
Q 012207 312 DCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASIN---SITKTCTS 381 (468)
Q Consensus 312 ~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~ 381 (468)
+|.+++..+..++ ..+++|++|++++| .+++.++..++ ..+++|+.|++++|. +++.+.. .....+++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPN 245 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTT
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCC
Confidence 7777655555332 25677888888774 66666544433 366778888887776 5543332 33346778
Q ss_pred CCeEEccCCCCCCHHHHHHHHh-----cCCCCCEEEccCCCCChhhH----Hhc-ccCCCCCEEeeCCCCccCHHH--HH
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVNDEGL----KSI-SRCSKLSSLKLGICSNITDEG--LK 449 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~----~~l-~~~~~L~~L~l~~~~~l~~~~--~~ 449 (468)
|++|++++|. +++.+...+.. .+++|+.|++++|.+++.+. ..+ .++++|+.|++++| .++... +.
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~ 323 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVD 323 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHH
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHH
Confidence 8888887754 66665444332 26778888888888877432 333 34788888888888 776554 45
Q ss_pred HHHhcCcccCeeecC
Q 012207 450 HVGSTCSMLKELDLY 464 (468)
Q Consensus 450 ~~~~~~~~L~~L~l~ 464 (468)
.+...+++++.+++.
T Consensus 324 ~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 324 EIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHTCCEEC
T ss_pred HHHHHhhhcCcchhh
Confidence 555566666555443
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.2e-23 Score=191.64 Aligned_cols=325 Identities=15% Similarity=0.077 Sum_probs=228.7
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..++++.++++++. +.... ..++..+++|++|+++++ .+.......+..+++|++|+++++. +.......+ ..++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred ccCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHh-cCCC
Confidence 46889999998764 22211 233447899999999988 4665554578889999999999865 333222222 3489
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+. .+...+++|++|+++++.+.......+..+++|++|+++++ .+.... +. .+++|+.
T Consensus 118 ~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~-~l~~L~~ 190 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LS-LIPSLFH 190 (390)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GG-GCTTCSE
T ss_pred CCCEEECCCC-ccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cc-cccccce
Confidence 9999999987 3443221 12347899999999999887766667888999999999985 444432 23 3899999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .. +...++|+.|+++++.... . + ....++|+.|++++|.+.+.. .+ ..+++|++|+++
T Consensus 191 L~l~~n~l-~~------~~~~~~L~~L~l~~n~l~~-~-~--~~~~~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~Ls 256 (390)
T 3o6n_A 191 ANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-R--GPVNVELTILKLQHNNLTDTA--WL-LNYPGLVEVDLS 256 (390)
T ss_dssp EECCSSCC-SE------EECCSSCSEEECCSSCCCE-E-E--CCCCSSCCEEECCSSCCCCCG--GG-GGCTTCSEEECC
T ss_pred eecccccc-cc------cCCCCcceEEECCCCeeee-c-c--ccccccccEEECCCCCCcccH--HH-cCCCCccEEECC
Confidence 99998753 22 2345689999999874322 1 1 123579999999999987652 23 378999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++.. .+..+..+++|++|++++|. ++.. ......+++|++|++++|. ++... ..+. .+++|+.|++++|
T Consensus 257 ~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-~l~~L~~L~L~~N 328 (390)
T 3o6n_A 257 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQP-QFDRLENLYLDHN 328 (390)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGHH-HHTTCSEEECCSS
T ss_pred CC-cCCCc-ChhHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCc-ceecC-cccc-ccCcCCEEECCCC
Confidence 85 45432 13335678999999999886 4322 1122468999999999965 44211 1122 6789999999999
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccC
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 459 (468)
.++... +..+++|+.|++++| .++......+...++...
T Consensus 329 ~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 329 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTTT
T ss_pred ccceeC---chhhccCCEEEcCCC-CccchhHHHHHHHHHhhc
Confidence 988763 667899999999999 888777777665555443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1e-23 Score=200.49 Aligned_cols=301 Identities=17% Similarity=0.123 Sum_probs=185.2
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
.++++.|+++++ .+.......+..+++|++|+++++. +.......+. .+++|++|+++++. ++..+.. .+..+++
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFN-NLFNLRTLGLRSNR-LKLIPLG-VFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCSCCTT-SSTTCTT
T ss_pred CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhh-CCccCCEEECCCCc-CCccCcc-cccCCCC
Confidence 368999999988 4655544567889999999998864 4432222222 37889999988763 4332211 2236788
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|+.|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~~~-~~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG-LNSLEQLTLEKCNLT-SIP-TEALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT-CTTCCEEEEESCCCS-SCC-HHHHTTCTTCCEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC-CCCCCEEECCCCcCc-ccC-hhHhcccCCCcEE
Confidence 889999888776655566777888888888874 444333333443 788888888877532 211 2345667788888
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++. +.......+..+++|++|+++++........... ...+|++|+++++ .++... ...+..+++|+.|++++
T Consensus 182 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCS
T ss_pred eCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC-cccccC-HHHhcCccccCeeECCC
Confidence 887763 3333344566777888888877654433222222 2347777777774 343211 22355667777777777
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|. ++.... .....+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 258 n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 258 NP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred Cc-CCccCh-hhccccccCCEEECCCCc-cceECHHHhc-CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 65 332211 112356777777777643 4332222222 56777777777777766655556667777777777773
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.7e-20 Score=170.12 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=174.3
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHh---cCCCCCEEEccCCcc--cC---hhh---HHHHHhcCCccceEeecCCCCC
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEY---SCKSLKALNLSKCQN--IS---HVG---LSSLIKGADYLQQLILAYSFWV 291 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~--~~---~~~---~~~~~~~~~~L~~L~l~~~~~~ 291 (468)
..+++|++|++++| .+.......+.. .+++|++|+++++.. +. ..+ +...+..+++|++|+++++. +
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 34566666666663 455544444332 367777777776521 11 112 22335678999999999984 4
Q ss_pred ch----hHHHHhhcCCCCCeeEecCCcCChhHHHHHHHh---C---------CCCCeEecccCCCCCHHHHH---HHHHh
Q 012207 292 SA----DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW---H---------GSLKELSLSKCSGVTDEELS---FVVQS 352 (468)
Q Consensus 292 ~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~---------~~L~~L~l~~~~~~~~~~l~---~~~~~ 352 (468)
.. .++..+..+++|++|++++|.+++.....+... + ++|++|++++| .+++.+++ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHh
Confidence 44 467788999999999999999987766665532 3 89999999995 67655555 45668
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHH----hcCCcCCeEEccCCCCCCHHHHHH---HHhcCCCCCEEEccCCCCChhhHHh
Q 012207 353 HKELRKLDITCCRKITYASINSIT----KTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKS 425 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (468)
+++|++|++++|. +++.++..+. ..+++|+.|++++|. +++.+... ....+++|++|++++|.+++.+...
T Consensus 186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 8999999999986 8877655544 378999999999965 77554433 3347899999999999999986554
Q ss_pred cc------cCCCCCEEeeCCCCccCHHHHHHHH----hcCcccCeeecCCCC
Q 012207 426 IS------RCSKLSSLKLGICSNITDEGLKHVG----STCSMLKELDLYRFS 467 (468)
Q Consensus 426 l~------~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~c~ 467 (468)
+. .+++|+.|++++| .++..++..+. .++|+|+.|++++|+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 33 3899999999999 99986444332 568999999999986
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.8e-22 Score=192.90 Aligned_cols=367 Identities=16% Similarity=0.110 Sum_probs=204.1
Q ss_pred cEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCC
Q 012207 74 TQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLE 153 (468)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 153 (468)
+.++++++. +.. + +....+++++|+++++. +.......+. .+++|++|+++++ .+.......+..+++|+
T Consensus 3 ~~l~ls~n~-l~~-----i-p~~~~~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNG-LIH-----V-PKDLSQKTTILNISQNY-ISELWTSDIL-SLSKLRILIISHN-RIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSC-CSS-----C-CCSCCTTCSEEECCSSC-CCCCCHHHHT-TCTTCCEEECCSS-CCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCC-ccc-----c-cccccccccEEECCCCc-ccccChhhcc-ccccccEEecCCC-ccCCcChHHhhcccCCC
Confidence 467777653 321 2 22233899999999875 3333323343 8999999999998 46655446788899999
Q ss_pred eEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC--Cee
Q 012207 154 RLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL--EDL 231 (468)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L 231 (468)
+|+++++. ++..... .+++|++|+++++. ++...++..+..+++|++|+++++.+.. ..+..+++| ++|
T Consensus 73 ~L~Ls~N~-l~~lp~~----~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 73 YLDLSHNK-LVKISCH----PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp EEECCSSC-CCEEECC----CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred EEecCCCc-eeecCcc----ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 99999874 4332211 48999999999874 4332222334588999999999998875 345556677 999
Q ss_pred eecCCCCC-ChHHHHHHHh-------------------------cCCCCCEEEccCCcc---cC-hhhHHHHHhcCCccc
Q 012207 232 VLEGCHGI-DDDGLASVEY-------------------------SCKSLKALNLSKCQN---IS-HVGLSSLIKGADYLQ 281 (468)
Q Consensus 232 ~l~~~~~~-~~~~~~~l~~-------------------------~~~~L~~L~l~~~~~---~~-~~~~~~~~~~~~~L~ 281 (468)
+++++... .......+.. .+++|+.++++++.. .. ..+....+..+++|+
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 99885430 1111111111 145566666655420 00 011112345667788
Q ss_pred eEeecCCCCCchhHHHHh--hcCCCCCeeEecCCcCCh-------------------------------hHHHHHH----
Q 012207 282 QLILAYSFWVSADLSKCL--HNFPMLQSIKFEDCPVAR-------------------------------SGIKAIG---- 324 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-------------------------------~~~~~l~---- 324 (468)
.|+++++........... ...++|++|++++|.+.+ ..+..+.
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCC
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCc
Confidence 888876532221111111 123466666666554331 1122220
Q ss_pred -----------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEc
Q 012207 325 -----------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM 387 (468)
Q Consensus 325 -----------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 387 (468)
..+++|++|+++++ .+++. .+..+..+++|++|++++|....-..+......+++|++|++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECC-ccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 13456666666653 33321 122234456666666666652222223333445666666666
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 388 ECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|. ++..........+++|+.|++++|.+++..+..+. ++|+.|++++| +++ .++.....+++|+.|++++|+
T Consensus 382 s~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 382 SQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred CCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCCc
Confidence 6643 32211111112456666666666666554333322 57777777777 666 244333367788888888775
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=6.1e-23 Score=204.50 Aligned_cols=359 Identities=13% Similarity=0.084 Sum_probs=237.2
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhH------------H-Hhhh-c--ccccCCccEEecCCCCcccHHHHHHhhhcCCC
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDA------------L-SIVS-S--SSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF 126 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~------------~-~~l~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 126 (468)
++..+..+++|+.|+++++. +.... . ..++ . ...+++|++|+++++..... ++..+..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCC
Confidence 56678899999999999875 33310 0 0122 1 22679999999998753221 1233448999
Q ss_pred CcEEEccCCCccCH-HHHHHHHcC-------CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHH
Q 012207 127 LTEIDLSNGTEMGD-AAAAAIAEA-------KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVA 198 (468)
Q Consensus 127 L~~L~l~~~~~~~~-~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 198 (468)
|+.|+++++..+.. .....+..+ ++|++|+++++. +...........+++|+.|+++++. ++..+ .+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~ 591 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE---AF 591 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---CC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch---hh
Confidence 99999999853554 333445554 499999999975 3321110123348999999999874 44332 34
Q ss_pred hhCCCccEeeecccCCCCCCccccccCCC-CCeeeecCCCCCChHHHHHHHh-cCCCCCEEEccCCcccChh-hHHHHH-
Q 012207 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQY-LEDLVLEGCHGIDDDGLASVEY-SCKSLKALNLSKCQNISHV-GLSSLI- 274 (468)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~-~~~~~~- 274 (468)
..+++|+.|++++|.+. .....+..+++ |++|+++++. +.... ..+.. ..++|+.|+++++...... .+..-.
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 57899999999999887 55667888888 9999999954 44221 11111 1245999999988643211 000001
Q ss_pred -hcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH-------hCCCCCeEecccCCCCCHHHH
Q 012207 275 -KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN-------WHGSLKELSLSKCSGVTDEEL 346 (468)
Q Consensus 275 -~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l 346 (468)
...++|+.|+++++. +.......+..+++|+.|++++|.+... ...+.. .+++|+.|++++| .++ .+
T Consensus 669 ~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~l 743 (876)
T 4ecn_A 669 DYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSI-PENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SL 743 (876)
T ss_dssp TCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCC-CTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CC
T ss_pred cccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCcc-ChHHhccccccccccCCccEEECCCC-CCc--cc
Confidence 123589999999984 4433334455899999999999987622 111111 2238999999985 555 24
Q ss_pred HHHHH--hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCC-----CCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 347 SFVVQ--SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCK-----LVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 347 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+..+. .+++|+.|++++|. ++. +......+++|+.|+++++. .+.......+. .+++|+.|++++|.++
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCC
T ss_pred hHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCCCC
Confidence 44444 78999999999986 443 33334579999999998743 22222222333 7999999999999985
Q ss_pred hhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 420 DEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 420 ~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
... ..+ .++|+.|++++| .+..
T Consensus 820 ~Ip-~~l--~~~L~~LdLs~N-~l~~ 841 (876)
T 4ecn_A 820 KVD-EKL--TPQLYILDIADN-PNIS 841 (876)
T ss_dssp BCC-SCC--CSSSCEEECCSC-TTCE
T ss_pred ccC-Hhh--cCCCCEEECCCC-CCCc
Confidence 433 333 379999999999 5543
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=7.2e-25 Score=213.64 Aligned_cols=156 Identities=18% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +.......+..++
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSY---SFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC-CCEECTT---TTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCT
T ss_pred ccccEEEccCCc-cCccChh---HhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcc
Confidence 468999998764 2221111 23567899999998874 332222 233478999999999884 5554445678899
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC--
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL-- 228 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-- 228 (468)
+|++|++.++. +....... ...+++|++|+++++. +....++..+..+++|++|+++++.+.......+..+++|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCS-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccc-cccCCCcc-ccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999864 33211111 2348999999999863 3332222234578999999999998776555556555565
Q ss_pred --CeeeecCC
Q 012207 229 --EDLVLEGC 236 (468)
Q Consensus 229 --~~L~l~~~ 236 (468)
+.++++++
T Consensus 178 ~~~~L~l~~n 187 (570)
T 2z63_A 178 LNLSLDLSLN 187 (570)
T ss_dssp CCCEEECTTC
T ss_pred hhhhcccCCC
Confidence 56666653
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=7.1e-24 Score=214.78 Aligned_cols=249 Identities=18% Similarity=0.091 Sum_probs=110.4
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|+.|+++++.+.......+..+++|+.|+++++ .+.......+.. +++|++|+++++..... ....+..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYG-LDNLQVLNLSYNLLGEL--YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTT-CSSCCEEEEESCCCSCC--CSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcC-CCCCCEEECCCCCCCcc--CHHHhcCCCCCC
Confidence 44555555555444333334445556666666553 333222222322 55666666665542110 011133455666
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCC-------------------CCC
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS-------------------GVT 342 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-------------------~~~ 342 (468)
.|+++++ .+.......+..+++|+.|++++|.+.... .+++|+.|+++++. .++
T Consensus 342 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp EEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCS------SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred EEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCccc------CCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 6666655 222222333455566666666666544211 13444554444421 111
Q ss_pred HHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHH----HHHHHHhcCCCCCEEEccCCCC
Q 012207 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE----AFVLIGQQCQYLEELDITENEV 418 (468)
Q Consensus 343 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 418 (468)
.......+..+++|+.|++++|. ++..........+++|+.|+++++. ++.. ........+++|+.|++++|.+
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCcc
Confidence 11111222344455555554443 1110000011123455555554432 1100 0001112456666666666666
Q ss_pred ChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 419 NDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 419 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+......+..+++|+.|++++| +++...... ..++|+.|++++|+
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~---~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSN-RLTVLSHND---LPANLEILDISRNQ 537 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC---CCSCCCEEEEEEEC
T ss_pred cccChhHccchhhhheeECCCC-CCCccChhh---hhccccEEECCCCc
Confidence 6555455556677777777777 665311111 11567777776654
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.2e-23 Score=197.06 Aligned_cols=305 Identities=15% Similarity=0.120 Sum_probs=211.1
Q ss_pred cccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcC
Q 012207 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (468)
...++++.|+++++. +....... +..+++|++|+++++ .+.......+..+++|++|+++++. +....... ...+
T Consensus 29 ~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV-FTGL 103 (477)
T ss_dssp CCCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS-STTC
T ss_pred CCCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCccc-ccCC
Confidence 345789999999864 33322222 347999999999988 4665544678889999999999864 33322111 2338
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|++|+++++. +..... ..+..+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+
T Consensus 104 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~-l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH-LHGLI 179 (477)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT-CTTCC
T ss_pred CCCCEEECCCCc-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc-cCCCc
Confidence 999999999874 332211 12347899999999999887666667888999999999995 555555555555 99999
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|++.++...... ...+..+++|+.|+++++.... ..+.......+|++|++++|.+.......+. .+++|++|++
T Consensus 180 ~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 255 (477)
T 2id5_A 180 VLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNL 255 (477)
T ss_dssp EEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHT-TCTTCCEEEC
T ss_pred EEeCCCCcCcEeC--hhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhc-CccccCeeEC
Confidence 9999987532211 1224567899999999875443 2333333455999999999998865545554 7899999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+++ .++... ...+..+++|+.|++++|. ++..... .+..+++|+.|+++++. ++......+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYN-PISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CSS-CCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTT-TBTTCTTCCEEECCSSC-CSCCCGGGB-SCGGGCCEEECCS
T ss_pred CCC-cCCccC-hhhccccccCCEEECCCCc-cceECHH-HhcCcccCCEEECCCCc-CceeCHhHc-CCCcccCEEEccC
Confidence 985 444321 2234567999999999886 4332111 22468999999999864 543222222 3678999999999
Q ss_pred CCCC
Q 012207 416 NEVN 419 (468)
Q Consensus 416 ~~~~ 419 (468)
|.+.
T Consensus 330 N~l~ 333 (477)
T 2id5_A 330 NPLA 333 (477)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8765
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.7e-21 Score=182.62 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=184.3
Q ss_pred hccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHH
Q 012207 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (468)
Q Consensus 67 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (468)
+..+++++.|+++++. +.+. +....+++|++|+++++. +.... ...+++|++|+++++. +... .+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~---~~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM-----TGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL---DV 102 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC-----TTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC---CC
T ss_pred hhHcCCCCEEEccCCC-cccC-----hhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee---ec
Confidence 3456788888888763 3321 123456888888888764 33221 3367888888888874 4443 26
Q ss_pred HcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCC
Q 012207 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (468)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (468)
..+++|++|+++++. ++... ...+++|++|+++++. ++..+ ...+++|++|++++|...... .+..++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccc--ccccCC
Confidence 678888888888764 33322 2347888888888763 33321 346788888888887332222 456678
Q ss_pred CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCC
Q 012207 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (468)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (468)
+|++|+++++ .+.... +.. +++|+.|+++++.... .. +..+++|+.|+++++. +.. ++ +..+++|+
T Consensus 171 ~L~~L~ls~n-~l~~l~---l~~-l~~L~~L~l~~N~l~~-~~----l~~l~~L~~L~Ls~N~-l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD---VSQ-NKLLNRLNCDTNNITK-LD----LNQNIQLTFLDCSSNK-LTE-ID--VTPLTQLT 236 (457)
T ss_dssp TCCEEECCSS-CCCCCC---CTT-CTTCCEEECCSSCCSC-CC----CTTCTTCSEEECCSSC-CSC-CC--CTTCTTCS
T ss_pred cCCEEECCCC-ccceec---ccc-CCCCCEEECcCCcCCe-ec----cccCCCCCEEECcCCc-ccc-cC--ccccCCCC
Confidence 8888888874 444332 333 7788888888775322 21 4556788888888774 332 22 66778888
Q ss_pred eeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEE
Q 012207 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (468)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (468)
.|++++|.+....+. .+++|+.|+++++ +|+.|++++|....... ...+++|+.|+
T Consensus 237 ~L~l~~N~l~~~~~~----~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ 292 (457)
T 3bz5_A 237 YFDCSVNPLTELDVS----TLSKLTTLHCIQT----------------DLLEIDLTHNTQLIYFQ----AEGCRKIKELD 292 (457)
T ss_dssp EEECCSSCCSCCCCT----TCTTCCEEECTTC----------------CCSCCCCTTCTTCCEEE----CTTCTTCCCCC
T ss_pred EEEeeCCcCCCcCHH----HCCCCCEEeccCC----------------CCCEEECCCCccCCccc----ccccccCCEEE
Confidence 888888877654321 4455555554431 23333333333222111 11334444444
Q ss_pred ccCCCCCCHHH-----HH--HHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 387 MECCKLVSWEA-----FV--LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 387 l~~~~~~~~~~-----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
+++|..+.... +. .+ ..+++|+.|++++|.++.. .++.+++|+.|++++| ++++
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l-~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDL-SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCC-TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB
T ss_pred CCCCcccceeccCCCcceEech-hhcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC
Confidence 44443211100 00 01 1447888888888888774 3777888888888888 7764
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-22 Score=196.18 Aligned_cols=322 Identities=16% Similarity=0.085 Sum_probs=222.3
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
...+++.++++++. +... ...++..+++|+.|+++++ .+.......+..+++|++|+++++. +.......+ ..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred cCCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCC
Confidence 45788999998753 2221 1233447899999999988 4665554578889999999999875 333222222 3489
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+. .++..+++|++|++++|.+.......+..+++|++|+++++ .+.... +. .+++|+.
T Consensus 124 ~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~-~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LS-LIPSLFH 196 (597)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GG-GCTTCSE
T ss_pred CCCEEEeeCC-CCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hh-hhhhhhh
Confidence 9999999987 3443222 22347899999999999888766677888999999999985 444332 23 3889999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .. +...++|+.|+++++.. ..... ...++|+.|++++|.+++. ..+ ..+++|+.|+++
T Consensus 197 L~l~~n~l-~~------l~~~~~L~~L~ls~n~l-~~~~~---~~~~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls 262 (597)
T 3oja_B 197 ANVSYNLL-ST------LAIPIAVEELDASHNSI-NVVRG---PVNVELTILKLQHNNLTDT--AWL-LNYPGLVEVDLS 262 (597)
T ss_dssp EECCSSCC-SE------EECCTTCSEEECCSSCC-CEEEC---SCCSCCCEEECCSSCCCCC--GGG-GGCTTCSEEECC
T ss_pred hhcccCcc-cc------ccCCchhheeeccCCcc-ccccc---ccCCCCCEEECCCCCCCCC--hhh-ccCCCCCEEECC
Confidence 99998753 22 23456899999988743 21111 1236899999999988764 223 268999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++.. .+..+..+++|+.|++++|. ++.. ......+++|+.|++++|. ++.. ...+ ..+++|+.|++++|
T Consensus 263 ~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i-~~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 263 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHV-ERNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECTTSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCC-GGGH-HHHTTCSEEECCSS
T ss_pred CC-ccCCC-CHHHhcCccCCCEEECCCCC-CCCC--CcccccCCCCcEEECCCCC-CCcc-Cccc-ccCCCCCEEECCCC
Confidence 85 45432 23345678999999999886 4321 2222358999999999865 4321 1122 26789999999999
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCc
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (468)
.++... +..+++|+.|++++| .++......+...++
T Consensus 335 ~l~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 335 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVA 370 (597)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCC
T ss_pred CCCCcC---hhhcCCCCEEEeeCC-CCCChhHHHHHHHHh
Confidence 887753 667889999999999 777666665554443
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.5e-21 Score=180.36 Aligned_cols=307 Identities=17% Similarity=0.123 Sum_probs=133.4
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
+++++.|++.++ .++..+...+..+++|++|++.++. +.......+ ..+++|++|+++++. ++..+. .....+++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCC-CCcCCH-HHhcCCCC
Confidence 355555555554 2343333344555555555555542 222111111 125555555555542 222111 11124555
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+++|+.|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l-~~~~----~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA-TTSLQNLQLSSNRL-THVD----LSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSS-CTTCCEEECCSSCC-SBCC----GGGCTTCSEE
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccC-CCCCCEEECCCCcC-Cccc----ccccccccee
Confidence 555555555554322222345555555555553 222222222222 55555555555442 1111 2334555555
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++.. . .+...++|++|+++++.+..... ...++|+.|+++++ .+++. ..+..+++|++|++++
T Consensus 192 ~l~~n~l-~-----~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 192 NVSYNLL-S-----TLAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp ECCSSCC-S-----EEECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred ecccccc-c-----ccCCCCcceEEECCCCeeeeccc----cccccccEEECCCC-CCccc---HHHcCCCCccEEECCC
Confidence 5555421 1 11233455555555555443211 02345555555553 23321 1234455555555555
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
|. ++.... .....+++|++|+++++. ++.. ......+++|++|++++|.++... ..+..+++|+.|++++| .+
T Consensus 258 n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N-~i 330 (390)
T 3o6n_A 258 NE-LEKIMY-HPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SI 330 (390)
T ss_dssp SC-CCEEES-GGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSS-CC
T ss_pred Cc-CCCcCh-hHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCcceecC-ccccccCcCCEEECCCC-cc
Confidence 53 221111 111245555555555532 2221 111124455555555555554322 22334555555555555 44
Q ss_pred CHHHHHHHHhcCcccCeeecCCCC
Q 012207 444 TDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+... ...+++|+.|++++|+
T Consensus 331 ~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCC----CCTTCCCSEEECCSSC
T ss_pred ceeC----chhhccCCEEEcCCCC
Confidence 4321 2345555555555554
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=7.1e-21 Score=178.41 Aligned_cols=303 Identities=19% Similarity=0.138 Sum_probs=205.7
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+++|++|+++++. +... +.+ ..+++|++|+++++. ++..+ +..+++|++|+++++. ++... ...++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~-l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNK-LTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred HcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCC-Cceee----cCCCC
Confidence 45889999998864 3321 233 378899999998884 55432 6778889999998865 33332 23478
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+ ...+++|++|+++++.+... .+..+++|++|+++++..+.... +.. +++|+.
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~-l~~L~~ 174 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTP-QTQLTT 174 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTT-CTTCCE
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---ccc-CCcCCE
Confidence 8888888886 344332 35778888888888877653 36678888888888865554432 333 788888
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .... +..+++|+.|+++++.. ... .+..+++|+.|++++|.+.... + ..+++|+.|+++
T Consensus 175 L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~ip---~-~~l~~L~~L~l~ 241 (457)
T 3bz5_A 175 LDCSFNKI-TELD----VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTEID---V-TPLTQLTYFDCS 241 (457)
T ss_dssp EECCSSCC-CCCC----CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECC
T ss_pred EECCCCcc-ceec----cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCcccccC---c-cccCCCCEEEee
Confidence 88887753 2221 45667888888877643 222 3667788888888888776532 2 256788888887
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++... ...+++|+.|++++ .+|+.|++++|....... ...|++|+.|++++|
T Consensus 242 ~N-~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 242 VN-PLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHN 296 (457)
T ss_dssp SS-CCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTC
T ss_pred CC-cCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCC
Confidence 74 444321 34567777777654 357788888876544322 137899999999998
Q ss_pred CCChhhHH--------hcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 417 EVNDEGLK--------SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 417 ~~~~~~~~--------~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
........ .++.+++|+.|++++| +++. +. ...+++|+.|++++|+
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~--l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE--LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCC-cccc--cc--cccCCcCcEEECCCCC
Confidence 53322111 2456789999999999 8886 32 4589999999999986
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.7e-21 Score=187.45 Aligned_cols=307 Identities=17% Similarity=0.126 Sum_probs=132.7
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
+++++.++++++ .++..+...+..+++|++|++.++. +.......+. .+++|++|+++++. ++..+. ..+..+++
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFA-YAHTIQKLYMGFNA-IRYLPP-HVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhc-CCCCCCEEECCCCc-CCCCCH-HHHcCCCC
Confidence 345555555554 2333333444555555555555542 2221111111 25555555555542 222111 11124555
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++... ... ...+++|+.|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~~~----~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA-TTSLQNLQLSSNRLT-HVD----LSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT-CTTCCEEECTTSCCS-BCC----GGGCTTCSEE
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhc-CCcCcEEECcCCCCC-CcC----hhhhhhhhhh
Confidence 555555555554333233345555555555553 232222222222 555555555554321 111 2334555555
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++.. . .+...++|+.|++++|.+...... ..++|+.|+++++ .+++. ..+..+++|+.|++++
T Consensus 198 ~l~~n~l-~-----~l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 198 NVSYNLL-S-----TLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ECCSSCC-S-----EEECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred hcccCcc-c-----cccCCchhheeeccCCcccccccc----cCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCC
Confidence 5555421 1 122334555555555554322110 1245555555553 23221 2233455555555555
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
|. ++.... ..+..+++|+.|++++|. ++. +......+++|+.|++++|.++... ..+..+++|+.|++++| .+
T Consensus 264 N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 264 NE-LEKIMY-HPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp SC-CCEEES-GGGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSS-CC
T ss_pred Cc-cCCCCH-HHhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCccC-cccccCCCCCEEECCCC-CC
Confidence 44 221111 111245555555555532 222 1111123455555555555554322 22344555555555555 44
Q ss_pred CHHHHHHHHhcCcccCeeecCCCC
Q 012207 444 TDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+... ...+++|+.|++++|+
T Consensus 337 ~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCC----CCTTCCCSEEECCSSC
T ss_pred CCcC----hhhcCCCCEEEeeCCC
Confidence 4321 2345555555555554
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.6e-21 Score=186.63 Aligned_cols=372 Identities=15% Similarity=0.094 Sum_probs=211.9
Q ss_pred CCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC
Q 012207 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (468)
Q Consensus 70 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (468)
+...+.++++++. +.. + +....+++++|+++++. +....... +..+++|++|+++++ .+......++..+
T Consensus 30 ~~~~~~l~ls~~~-L~~-----i-p~~~~~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 99 (562)
T 3a79_B 30 NELESMVDYSNRN-LTH-----V-PKDLPPRTKALSLSQNS-ISELRMPD-ISFLSELRVLRLSHN-RIRSLDFHVFLFN 99 (562)
T ss_dssp ---CCEEECTTSC-CCS-----C-CTTSCTTCCEEECCSSC-CCCCCGGG-TTTCTTCCEEECCSC-CCCEECTTTTTTC
T ss_pred cCCCcEEEcCCCC-Ccc-----C-CCCCCCCcCEEECCCCC-ccccChhh-hccCCCccEEECCCC-CCCcCCHHHhCCC
Confidence 3445788888763 332 2 22234899999999875 33222223 348999999999998 4665555678889
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
++|++|+++++. ++..... .+++|++|+++++. ++..+....+..+++|++|+++++.+....+..+.++ +|+
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~ 172 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLS 172 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEE
T ss_pred CCCCEEECCCCc-CCccCcc----ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eee
Confidence 999999999875 3332211 48999999999974 4443322334588999999999998876555544444 459
Q ss_pred eeeecCCCCC-ChHHHHHHH-------------------------hcCCCCCEEEccCCccc--ChhhHHHHHhcCCccc
Q 012207 230 DLVLEGCHGI-DDDGLASVE-------------------------YSCKSLKALNLSKCQNI--SHVGLSSLIKGADYLQ 281 (468)
Q Consensus 230 ~L~l~~~~~~-~~~~~~~l~-------------------------~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~ 281 (468)
+|+++++... .......+. ..+++|+.++++++... ...+....+...++|+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 9999885320 111000111 12456677777665310 0112223456678888
Q ss_pred eEeecCCCCCchhHHHH--hhcCCCCCeeEecCCcCCh-------------------------------hHHHHHH----
Q 012207 282 QLILAYSFWVSADLSKC--LHNFPMLQSIKFEDCPVAR-------------------------------SGIKAIG---- 324 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~-------------------------------~~~~~l~---- 324 (468)
.+++.++.......... ....++|++|++++|.+.+ ..+..+.
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 88887663322222111 1133478888887776442 1222221
Q ss_pred -----------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCH-HHHHHHHhcCCcCCeEE
Q 012207 325 -----------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY-ASINSITKTCTSLTSLR 386 (468)
Q Consensus 325 -----------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~ 386 (468)
..+++|++|+++++ .+++. .+..+..+++|+.|++++|. ++. ..+......+++|+.|+
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 23456666666653 33321 12223455666666666654 332 12222234566677777
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
++++. ++..........+++|+.|++++|.+++..+..+. ++|+.|++++| +++. ++.....+++|+.|++++|
T Consensus 410 l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 410 VSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS--IPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC--CCTTTTSSCCCSEEECCSS
T ss_pred CCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc--cChhhcCCCCCCEEECCCC
Confidence 76643 32211111122456677777777766654332221 57888888887 7763 3332236788888888877
Q ss_pred C
Q 012207 467 S 467 (468)
Q Consensus 467 ~ 467 (468)
+
T Consensus 484 ~ 484 (562)
T 3a79_B 484 Q 484 (562)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.3e-21 Score=193.36 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++++.++++.+ .+... ....+..++.|+.|++++|...... .......+++|++|++++|. ++......+. .+
T Consensus 443 ~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-~l 517 (635)
T 4g8a_A 443 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SL 517 (635)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TC
T ss_pred ccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcChHHHc-CC
Confidence 4556666666653 22211 1223445678888888877532211 11223467899999999864 5433222333 78
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcC-cccCeeecCCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC-SMLKELDLYRFS 467 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 467 (468)
++|++|++++|.++......+..+++|+.|++++| +++......+ ..+ ++|+.|++++|+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence 89999999999888877677888899999999999 7775322223 345 589999999887
No 48
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=1.2e-17 Score=152.31 Aligned_cols=257 Identities=15% Similarity=0.115 Sum_probs=162.3
Q ss_pred EeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCc----cccccCC-CCCeeeecCCCCCChHHHHHHHh---c-C
Q 012207 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL----PPVVKLQ-YLEDLVLEGCHGIDDDGLASVEY---S-C 251 (468)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~ 251 (468)
++++.+ .++. .++.+....++|++|++++|.+++... ..+..++ +|++|++++| .+.+.....+.. . +
T Consensus 3 ~~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLH-PGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCC-TTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred cccccc-cchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 345553 3433 234444455669999999998887776 5566777 8999999985 565544444443 1 2
Q ss_pred CCCCEEEccCCcccCh---hhHHHHHhcC-CccceEeecCCCCCchhHH----HHhhc-CCCCCeeEecCCcCChhHHHH
Q 012207 252 KSLKALNLSKCQNISH---VGLSSLIKGA-DYLQQLILAYSFWVSADLS----KCLHN-FPMLQSIKFEDCPVARSGIKA 322 (468)
Q Consensus 252 ~~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~~~~ 322 (468)
++|++|+++++. +++ ..+...+... ++|++|+++++. +..... ..+.. .++|++|++++|.+++.+...
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 889999999886 332 2333444555 788888888874 443333 33444 358888888888887655554
Q ss_pred HHH---hCC-CCCeEecccCCCCCHH---HHHHHHHhCC-CCCeEecCCCCCCCHHHHH---HHHhc-CCcCCeEEccCC
Q 012207 323 IGN---WHG-SLKELSLSKCSGVTDE---ELSFVVQSHK-ELRKLDITCCRKITYASIN---SITKT-CTSLTSLRMECC 390 (468)
Q Consensus 323 l~~---~~~-~L~~L~l~~~~~~~~~---~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~ 390 (468)
+.. ..+ +|++|++++| .+++. .+...+..++ +|++|++++|. +++.+.. ..... .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 432 333 8888888885 44432 3344455564 88888888876 5543322 22223 458888888885
Q ss_pred CCCCHHHH---HHHHhcCCCCCEEEccCCC---CChhhHHhc----ccCCCCCEEeeCCCCccCHH
Q 012207 391 KLVSWEAF---VLIGQQCQYLEELDITENE---VNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 391 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~---~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (468)
. +++.+. ..+...+++|+.|++++|. +++.....+ ..+++|+.|++++| .+.+.
T Consensus 236 ~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 236 C-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp C-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred C-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 3 655433 3333467788888888876 555444443 34667778888888 77654
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=3.5e-19 Score=162.11 Aligned_cols=236 Identities=16% Similarity=0.094 Sum_probs=132.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++... .......+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCC
Confidence 4555555555555554433344555566666666552 333333222333 566666666655321 1100012344566
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|++|+++++..+.......+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. .......+++|+.|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L 227 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMK-QHILL-LEIFVDVTSSVECL 227 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS-CSTTH-HHHHHHHTTTEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCC-ccccc-hhhhhhhcccccEE
Confidence 666666665434333344556667777777777666544333333 4567777777764 33322 12334456777777
Q ss_pred ecCCCCCCCHHHHHH--HHhcCCcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 360 DITCCRKITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
++++|. ++...... .....+.++.+++.++ .+++..+..+ ...+++|++|++++|.++......+..+++|+.
T Consensus 228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 777664 32211111 1124677888888874 4666544332 347889999999999888665444578899999
Q ss_pred EeeCCCCcc
Q 012207 435 LKLGICSNI 443 (468)
Q Consensus 435 L~l~~~~~l 443 (468)
|++++|+-.
T Consensus 306 L~L~~N~~~ 314 (353)
T 2z80_A 306 IWLHTNPWD 314 (353)
T ss_dssp EECCSSCBC
T ss_pred EEeeCCCcc
Confidence 999999433
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=4.6e-21 Score=171.05 Aligned_cols=179 Identities=13% Similarity=0.183 Sum_probs=96.4
Q ss_pred cCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCC-CCCeEecccCCCCCHHHHHHHHHhCC
Q 012207 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSHK 354 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~ 354 (468)
.+++|++|+++++ .+....+..+..+++|++|++++|.+....+..+. .++ +|++|+++++ .++.. ++..+..++
T Consensus 123 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~ 198 (313)
T 1ogq_A 123 QIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN 198 (313)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC
T ss_pred CCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc
Confidence 3444555555444 22223333445555566666655555433333333 233 5666666553 22110 111223333
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
|+.|++++|. ++.. .......+++|+.|+++++. ++.. ...+ ..+++|++|++++|.+++..+..+..+++|+.
T Consensus 199 -L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 199 -LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-LAFD-LGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp -CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-ECCB-GGGC-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred -ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-eeee-cCcc-cccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 6666666654 2211 11122356777777777644 3211 1112 26678888888888887666667778888888
Q ss_pred EeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 435 LKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|++++| .++.. ++.. ..+++|+.+++.+|+
T Consensus 273 L~Ls~N-~l~~~-ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 LNVSFN-NLCGE-IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSS-EEEEE-CCCS-TTGGGSCGGGTCSSS
T ss_pred EECcCC-ccccc-CCCC-ccccccChHHhcCCC
Confidence 888888 66632 2222 467888888888876
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=4.1e-17 Score=148.83 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=177.7
Q ss_pred HHHHHhcCCCCcEEeccCCCCCChHHH---HHHHhhCC-CccEeeecccCCCCCCccccccC-----CCCCeeeecCCCC
Q 012207 168 IGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQ-EIRTLDLSYLPITEKCLPPVVKL-----QYLEDLVLEGCHG 238 (468)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~ 238 (468)
+..+....++|++|+++++. +++.+. ......++ +|++|++++|.+++.....+..+ ++|++|++++| .
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-F 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-C
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-c
Confidence 34445545679999999974 554433 23445677 89999999999988877777654 99999999995 4
Q ss_pred CChHHHHHHHh---cC-CCCCEEEccCCcccChhhHHH---HHhc-CCccceEeecCCCCCch----hHHHHhhcCC-CC
Q 012207 239 IDDDGLASVEY---SC-KSLKALNLSKCQNISHVGLSS---LIKG-ADYLQQLILAYSFWVSA----DLSKCLHNFP-ML 305 (468)
Q Consensus 239 ~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~----~~~~~l~~~~-~L 305 (468)
+.+.....+.. .+ ++|++|+++++. +++.+... .+.. .++|++|+++++ .+.+ .+...+...+ +|
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccc
Confidence 55444333332 24 899999999987 44443333 3444 469999999998 4442 4555667776 99
Q ss_pred CeeEecCCcCChhHHHHHHH---hC-CCCCeEecccCCCCCHHH---HHHHHHh-CCCCCeEecCCCCCCCHH---HHHH
Q 012207 306 QSIKFEDCPVARSGIKAIGN---WH-GSLKELSLSKCSGVTDEE---LSFVVQS-HKELRKLDITCCRKITYA---SINS 374 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---l~~~~~~-~~~L~~L~l~~~~~~~~~---~~~~ 374 (468)
++|++++|.+++.....++. .+ ++|++|+++++ .+++.+ +...+.. .++|++|++++|. +++. .+..
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 247 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL 247 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH
Confidence 99999999988766655442 45 59999999985 565533 3344444 4699999999986 5553 3344
Q ss_pred HHhcCCcCCeEEccCCC--CCCHHHHHHHHh---cCCCCCEEEccCCCCChhhHH
Q 012207 375 ITKTCTSLTSLRMECCK--LVSWEAFVLIGQ---QCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~ 424 (468)
....+++|+.|++++|. .++..++..+.. .+++|+.|++++|.+.+....
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 44578999999999865 467776766654 456788899999999876333
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=9.1e-19 Score=157.89 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=139.0
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+..... ...++|++|+++++... .. ....+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~ 146 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE----KMPKTLQELRVHENEIT-KV-RKSVFNGLNQ 146 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSSCCC-BB-CHHHHTTCTT
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh----hhcccccEEECCCCccc-cc-CHhHhcCCcc
Confidence 4455555555555544433444455555555555553 2221110 01245666666554321 11 1223445566
Q ss_pred cceEeecCCCCCc-hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCe
Q 012207 280 LQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (468)
Q Consensus 280 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 358 (468)
|+.|+++++.... ......+..+++|++|+++++.+..... . ..++|++|+++++ .++... ...+..+++|++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~---~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 220 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-G---LPPSLTELHLDGN-KITKVD-AASLKGLNNLAK 220 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-S---CCTTCSEEECTTS-CCCEEC-TGGGTTCTTCCE
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-c---ccccCCEEECCCC-cCCccC-HHHhcCCCCCCE
Confidence 6666666553221 1233445667777777777776553211 0 2367888888774 344321 223456788888
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc------CCCC
Q 012207 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR------CSKL 432 (468)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L 432 (468)
|++++|. ++..... ....+++|++|++++|. ++ .+......+++|++|++++|.++..+...+.. .++|
T Consensus 221 L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 221 LGLSFNS-ISAVDNG-SLANTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp EECCSSC-CCEECTT-TGGGSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred EECCCCc-CceeChh-hccCCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 8888775 3322111 22467889999998864 44 12111237889999999999888876555542 4788
Q ss_pred CEEeeCCCCccCHHHH-HHHHhcCcccCeeecCCCC
Q 012207 433 SSLKLGICSNITDEGL-KHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 433 ~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~c~ 467 (468)
+.|++++| .+....+ ......+++++.+++++|+
T Consensus 296 ~~l~l~~N-~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSS-SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecC-cccccccCccccccccceeEEEecccC
Confidence 99999999 5543222 2334468899999999885
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=4e-19 Score=158.93 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=130.6
Q ss_pred HHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhc
Q 012207 171 IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS 250 (468)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 250 (468)
+...+++|++|+++++ .++..... .+..+++|++|++++|.+... ..+..+++|++|+++++ .+.... .
T Consensus 29 ~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n-~l~~l~-----~- 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNN-YVQELL-----V- 97 (317)
T ss_dssp HHTTGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSCCEEE--EEETTCTTCCEEECCSS-EEEEEE-----E-
T ss_pred HhccCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCcCCcc--hhhhhcCCCCEEECcCC-cccccc-----C-
Confidence 3334556666666665 33332222 223566666666666655421 12555666666666653 222211 1
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++|++|+++++.. .. .. ...+++|+.|++++|.+.......+. .+++|
T Consensus 98 ~~~L~~L~l~~n~l-~~--------------------------~~---~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L 146 (317)
T 3o53_A 98 GPSIETLHAANNNI-SR--------------------------VS---CSRGQGKKNIYLANNKITMLRDLDEG-CRSRV 146 (317)
T ss_dssp CTTCCEEECCSSCC-SE--------------------------EE---ECCCSSCEEEECCSSCCCSGGGBCTG-GGSSE
T ss_pred CCCcCEEECCCCcc-CC--------------------------cC---ccccCCCCEEECCCCCCCCccchhhh-ccCCC
Confidence 35555555555431 11 10 01234555555555554433222222 34556
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++......+...+++|++|++++|. ++.. ... ..+++|++|++++|. ++.... .+ ..+++|+.
T Consensus 147 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~-~~-~~l~~L~~ 218 (317)
T 3o53_A 147 QYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EF-QSAAGVTW 218 (317)
T ss_dssp EEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GG-GGGTTCSE
T ss_pred CEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccccCCEEECCCCc-CCcchh-hh-cccCcccE
Confidence 66666553 33322222223345666666666654 2211 000 136778888887743 442211 12 36788999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (468)
|++++|.++... ..+..+++|+.|++++| .++...+..+...+++|+.+++.+
T Consensus 219 L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 219 ISLRNNKLVLIE-KALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECTTSCCCEEC-TTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EECcCCcccchh-hHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCC
Confidence 999988888643 45667889999999998 777446666677788888777663
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=3.1e-18 Score=154.41 Aligned_cols=266 Identities=17% Similarity=0.124 Sum_probs=185.7
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+++.++++++ .++..+. ...++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAP-LVKLER 104 (330)
T ss_dssp ETTEEECTTS-CCCSCCC----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTT-CTTCCE
T ss_pred CCeEEEecCC-CccccCc----cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcC-CCCCCE
Confidence 5667766654 2322111 12368999999999887666667889999999999985 455443344554 899999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEe
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELS 334 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~ 334 (468)
|+++++.. .... ....++|++|+++++ .+.......+..+++|+.|+++++.+...+ ...+ ..+++|++|+
T Consensus 105 L~Ls~n~l-~~l~----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~ 177 (330)
T 1xku_A 105 LYLSKNQL-KELP----EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIR 177 (330)
T ss_dssp EECCSSCC-SBCC----SSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEE
T ss_pred EECCCCcC-CccC----hhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEE
Confidence 99998763 2211 112378999999987 455566677889999999999999886422 2223 3689999999
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (468)
++++ .++. ++. ...++|++|++++|. ++..... ....+++|++|+++++. ++......+. .+++|++|+++
T Consensus 178 l~~n-~l~~--l~~--~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~ 248 (330)
T 1xku_A 178 IADT-NITT--IPQ--GLPPSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLN 248 (330)
T ss_dssp CCSS-CCCS--CCS--SCCTTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECC
T ss_pred CCCC-cccc--CCc--cccccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CceeChhhcc-CCCCCCEEECC
Confidence 9985 4442 111 123799999999986 4433222 23478999999999854 5543322333 78999999999
Q ss_pred CCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH-----hcCcccCeeecCCCC
Q 012207 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG-----STCSMLKELDLYRFS 467 (468)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~L~~L~l~~c~ 467 (468)
+|.++.. +..+..+++|+.|++++| .++......+. ...++|+.|++.+|+
T Consensus 249 ~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 249 NNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 9988854 345778999999999999 88754333221 135789999999986
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=2.4e-19 Score=177.16 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=97.1
Q ss_pred HhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHh
Q 012207 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (468)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (468)
.+..+++++.++++.+.+.......+. .++.++.|+++++.... ...+..+..+++|+.|++++|. ++.... ..+.
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f~ 515 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFN 515 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECT-TTTT
T ss_pred ccccccccccccccccccccccccccc-cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcCh-HHHc
Confidence 355667888888887765433322222 67899999999853222 1122335577999999999986 443221 2235
Q ss_pred cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccC-CCCCEEeeCCCCcc
Q 012207 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICSNI 443 (468)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l 443 (468)
++++|++|+++++. ++......+. .+++|++|++++|.++......+..+ ++|+.|++++|+-.
T Consensus 516 ~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 516 SLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCc-CCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 78999999999854 5432222233 78999999999999998877777777 58999999988444
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.9e-19 Score=159.35 Aligned_cols=231 Identities=19% Similarity=0.119 Sum_probs=138.3
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHH--HHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDG--LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
++|++|+++++.+.......+.++++|++|+++++ .+.... ...+.. +++|++|+++++..... ...+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l---~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFG-TTSLKYLDLSFNGVITM---SSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHS-CSCCCEEECCSCSEEEE---EEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccccc-ccccCEEECCCCccccC---hhhcCCCCC
Confidence 46666777666655433334556677777777663 333211 122233 67777777776642211 111344667
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|++|+++++..........+..+++|++|++++|.+.......+. .+++|++|+++++ .+++..++..+..+++|++|
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 777777765322211123466777888888887776543333332 5678888888774 33321123334567888888
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLG 438 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~ 438 (468)
++++|. ++.... .....+++|++|+++++. ++......+ ..+++|+.|++++|.+++.....+..++ +|+.|+++
T Consensus 181 ~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 181 DLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred ECCCCC-cCCcCH-HHhcCCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 888875 332211 122467889999998854 433222222 3788999999999998887767777775 89999999
Q ss_pred CCCccC
Q 012207 439 ICSNIT 444 (468)
Q Consensus 439 ~~~~l~ 444 (468)
+| .++
T Consensus 257 ~N-~~~ 261 (306)
T 2z66_A 257 QN-DFA 261 (306)
T ss_dssp TC-CEE
T ss_pred CC-Cee
Confidence 99 553
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.3e-18 Score=161.57 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=111.6
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-LANLNTLELFDNRL-TTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT-CSSCCEEECCSSCC-SSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC-CccCCEEECCCCcC-CeeC-HhHhhccccCc
Confidence 45666666666555444455556666666666663 333332223333 56666666665532 1110 01133455666
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
.|+++++. +.......+..+++|++|++.++.............+++|++|+++++ .++. ++. +..+++|+.|++
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDL 214 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEEC
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEEC
Confidence 66666552 332333345566777777777643221111111124566777777664 3331 111 234456666666
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 215 s~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGNH-LSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCc-cCccCh-hhhccCccCCEEECCCCc-eeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 6654 322111 112345666666665532 3322222222 4566666666666665554444555566666666655
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.5e-18 Score=161.91 Aligned_cols=226 Identities=18% Similarity=0.105 Sum_probs=108.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-LASLNTLELFDNWL-TVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCC-SBCC-TTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC-cccCCEEECCCCcC-CccC-hhhhcccCCCC
Confidence 35555555555554444444555566666666553 333322222332 55566666655431 1100 11123445566
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+|+++++. +.......+..+++|+.|++.++.............+++|++|+++++ .++. ++ .+..+++|+.|++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD--MP-NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc--cc-cccccccccEEEC
Confidence 66665552 222223345567777777777643221111111124567777777664 3332 11 1334556666666
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 226 s~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SGNH-FPEIRP-GSFHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSC-CSEECG-GGGTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCCc-CcccCc-ccccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 6654 222111 112345666666666533 3322222222 5566666666666665544444555666666666665
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=4.6e-19 Score=159.87 Aligned_cols=268 Identities=13% Similarity=0.103 Sum_probs=130.3
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
++|+.|+++++ .+.......+..+++|++|+++++. ++......+ ..+++|++|+++++. ++..+. ...++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~----~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF-SPLRKLQKLYISKNH-LVEIPP----NLPSSL 125 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS-TTCTTCCEEECCSSC-CCSCCS----SCCTTC
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh-hCcCCCCEEECCCCc-CCccCc----cccccC
Confidence 45666666655 2333332345556666666666543 222211112 225666666666542 222111 022677
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChH--HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDD--GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
++|+++++.+.......+..+++|++|+++++ .+... ....+.. + +|+.|+++++.... .. ....++|++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~----~~~~~~L~~ 197 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDG-L-KLNYLRISEAKLTG-IP----KDLPETLNE 197 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CC----SSSCSSCSC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccC-C-ccCEEECcCCCCCc-cC----ccccCCCCE
Confidence 77777777766554455667777777777774 33221 1111111 2 56666666554211 00 001134555
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecC
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 362 (468)
|+++++ .+....+..+..+++|++|++++|.+...... .+..+++|+.|+++
T Consensus 198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~---------------------------~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG---------------------------SLSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT---------------------------GGGGCTTCCEEECC
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChh---------------------------HhhCCCCCCEEECC
Confidence 555544 22222223334444455555544443322211 12344555555555
Q ss_pred CCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh-----cCCCCCEEEccCCCCC--hhhHHhcccCCCCCEE
Q 012207 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVN--DEGLKSISRCSKLSSL 435 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L 435 (468)
+|. ++. +......+++|+.|+++++. ++......+.. ..+.|+.|++.+|.+. +.....+..+++|+.+
T Consensus 250 ~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 250 NNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCc-Cee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 543 221 11112345666666666532 43322222211 2467889999998776 4444556678899999
Q ss_pred eeCCC
Q 012207 436 KLGIC 440 (468)
Q Consensus 436 ~l~~~ 440 (468)
++++|
T Consensus 326 ~l~~n 330 (332)
T 2ft3_A 326 QFGNY 330 (332)
T ss_dssp EC---
T ss_pred hcccc
Confidence 99887
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=9.9e-20 Score=162.39 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred hCCCccEeeecc-cCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
.+++|++|++++ +.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++..... +...+..++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~--~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhC-CCCCCEEeCCCCccCCc--CChHHhcCC
Confidence 556666666663 4555445555556666666666653 232222222333 66666666666542211 112234566
Q ss_pred ccceEeecCCCCCchhHHHHhhcCC-CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
+|++|+++++ .+....+..+..++ +|+.|++++|.+....+..+. .++ |++|+++++ .++.. .+..+..+++|+
T Consensus 150 ~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 150 NLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSS-EEEEC-CGGGCCTTSCCS
T ss_pred CCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCC-cccCc-CCHHHhcCCCCC
Confidence 7777777766 34444555666776 788888888876644444443 333 888888874 33221 233345678888
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
.|++++|....... . ...+++|++|+++++. ++......+. .+++|+.|++++|.+++..+.. ..+++|+.+++
T Consensus 225 ~L~L~~N~l~~~~~--~-~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 225 KIHLAKNSLAFDLG--K-VGLSKNLNGLDLRNNR-IYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSEECCBGG--G-CCCCTTCCEEECCSSC-CEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred EEECCCCceeeecC--c-ccccCCCCEEECcCCc-ccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 99888876321111 1 3467899999999855 4422222233 7899999999999888654333 67889999999
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
++|+.+.
T Consensus 299 ~~N~~lc 305 (313)
T 1ogq_A 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred cCCCCcc
Confidence 9996565
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=2.7e-19 Score=159.69 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHH--HhCCCCCeEecCCCCCCCH-HH-HHHHHhc
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--QSHKELRKLDITCCRKITY-AS-INSITKT 378 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~ 378 (468)
++|++|++++|.+.......+. .+++|++|+++++......++.... ..+++|++|++++|. ++. .. ...+...
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhc
Confidence 5555555555554433323332 4556666666653222112222222 445666666666664 331 11 2233345
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCccc
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 458 (468)
+++|++|+++++. ++..........+++|++|++++|.++... ..+. ++|+.|++++| +++.. +. ...+++|
T Consensus 227 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L 298 (312)
T 1wwl_A 227 RVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KGLP--AKLSVLDLSYN-RLDRN--PS-PDELPQV 298 (312)
T ss_dssp TCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SSCC--SEEEEEECCSS-CCCSC--CC-TTTSCEE
T ss_pred CCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhh-hhcc--CCceEEECCCC-CCCCC--hh-HhhCCCC
Confidence 5666666666643 332210011114567777777777766322 2222 67777777777 66643 22 4467777
Q ss_pred CeeecCCCC
Q 012207 459 KELDLYRFS 467 (468)
Q Consensus 459 ~~L~l~~c~ 467 (468)
+.|++++|+
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 777777775
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=8.3e-18 Score=153.05 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=180.2
Q ss_pred CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
.++|++|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS-LGSLEHLDLSYNYLS-NLS-SSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCCS-SCC-HHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC-CCCCCEEECCCCcCC-cCC-HhHhCCCccC
Confidence 368999999999887655556888999999999985 555543334544 899999999988633 221 2346788999
Q ss_pred ceEeecCCCCCchhHH-HHhhcCCCCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCe
Q 012207 281 QQLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 358 (468)
++|+++++. +..... ..+..+++|++|++++|. +.......+. .+++|++|+++++ .++.. .+..+..+++|++
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~ 202 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSH 202 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEE
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC-CcCcc-CHHHHhccccCCe
Confidence 999999874 332222 357789999999999984 5443333333 6789999999985 44432 1333557889999
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHH---HHHHHHhcCCCCCEEEccCCCCChhhHHh----cccCCC
Q 012207 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE---AFVLIGQQCQYLEELDITENEVNDEGLKS----ISRCSK 431 (468)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~ 431 (468)
|++++|. ++... ......+++|+.|+++++. ++.. .+... ..++.++.++++++.+++..... +..+++
T Consensus 203 L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 203 LILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccC
Confidence 9999987 44333 2334468999999999864 4432 22222 25788999999999998865443 567999
Q ss_pred CCEEeeCCCCccCHHHHHH-HHhcCcccCeeecCCCC
Q 012207 432 LSSLKLGICSNITDEGLKH-VGSTCSMLKELDLYRFS 467 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c~ 467 (468)
|+.|++++| +++. ++. +...+++|+.|++++|+
T Consensus 279 L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 279 LLELEFSRN-QLKS--VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCc--cCHHHHhcCCCCCEEEeeCCC
Confidence 999999999 8884 333 33579999999999996
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=3.9e-19 Score=158.50 Aligned_cols=249 Identities=14% Similarity=0.067 Sum_probs=169.6
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
+.++.++..++... .. -.++|++|+++++ .+.......+.. +++|++|+++++..............+++|+.|+
T Consensus 10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n-~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TG--IPSSATRLELESN-KLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCCEEECCSS-CCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCC-CC--CCCCCCEEECCCC-ccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45666655443221 11 2368999999985 455433333444 8999999999886322111112244689999999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. . .++..+..+++|++|+++++.+...........+++|++|+++++ .+... ....+..+++|++|++++|
T Consensus 85 Ls~n~i-~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 85 LSFNGV-I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CCSCSE-E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC
T ss_pred CCCCcc-c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC
Confidence 998742 2 334447789999999999998765433122236799999999985 33321 2233557899999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
. ++..........+++|++|++++|. ++......+. .+++|++|++++|.+++.....+..+++|+.|++++| .++
T Consensus 161 ~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 236 (306)
T 2z66_A 161 S-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIM 236 (306)
T ss_dssp E-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCC
T ss_pred c-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCc
Confidence 6 3321122233468999999999964 5543333333 7899999999999998876667788999999999999 777
Q ss_pred HHHHHHHHhcC-cccCeeecCCCC
Q 012207 445 DEGLKHVGSTC-SMLKELDLYRFS 467 (468)
Q Consensus 445 ~~~~~~~~~~~-~~L~~L~l~~c~ 467 (468)
......+. .+ ++|+.|++++|+
T Consensus 237 ~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCC-CCCTTCCEEECTTCC
T ss_pred ccCHHHHH-hhhccCCEEEccCCC
Confidence 53333333 55 499999999986
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=7.6e-17 Score=150.96 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=24.9
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+|+.|++++|. ++. +...+++|+.|++++|. ++. ++. .+++|++|++++|.++.
T Consensus 318 ~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNK-LIE-----LPALPPRLERLIASFNH-LAE--VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCc-ccc-----ccccCCcCCEEECCCCc-ccc--ccc---hhhhccEEECCCCCCCc
Confidence 55555555543 221 11124556666665543 221 111 24556666666655544
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=2e-16 Score=148.18 Aligned_cols=321 Identities=16% Similarity=0.124 Sum_probs=198.8
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC-
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (468)
..+++++++++. +.. + ....++|++|+++++. +.. + ....++|++|+++++. +.. +...
T Consensus 71 ~~l~~L~l~~~~-l~~-----l--p~~~~~L~~L~l~~n~-l~~--l---p~~~~~L~~L~l~~n~-l~~-----l~~~~ 130 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS-----L--PELPPHLESLVASCNS-LTE--L---PELPQSLKSLLVDNNN-LKA-----LSDLP 130 (454)
T ss_dssp HTCSEEECTTSC-CSC-----C--CSCCTTCSEEECCSSC-CSS--C---CCCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEecCCc-ccc-----C--CCCcCCCCEEEccCCc-CCc--c---ccccCCCcEEECCCCc-cCc-----ccCCC
Confidence 467889998774 222 2 1234789999998764 221 1 1235789999998873 433 1122
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
++|++|+++++. ++.. .. ...+++|++|+++++. ++..+ ...++|++|+++++.+.. +..+.++++|+
T Consensus 131 ~~L~~L~L~~n~-l~~l--p~-~~~l~~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n~l~~--l~~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKL--PE-LQNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC-CSSC--CC-CTTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSS--CCCCTTCTTCC
T ss_pred CCCCEEECcCCC-CCCC--cc-cCCCCCCCEEECCCCc-CcccC-----CCcccccEEECcCCcCCc--CccccCCCCCC
Confidence 689999998864 3332 22 3348899999998873 43311 134689999999997765 34678899999
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeE
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (468)
+|+++++. +... ....++|++|+++++... .. .. +..+++|+.|+++++.. .. ++ ...++|+.|+
T Consensus 199 ~L~l~~N~-l~~l-----~~~~~~L~~L~l~~n~l~-~l--p~-~~~l~~L~~L~l~~N~l-~~-l~---~~~~~L~~L~ 263 (454)
T 1jl5_A 199 AIYADNNS-LKKL-----PDLPLSLESIVAGNNILE-EL--PE-LQNLPFLTTIYADNNLL-KT-LP---DLPPSLEALN 263 (454)
T ss_dssp EEECCSSC-CSSC-----CCCCTTCCEEECCSSCCS-SC--CC-CTTCTTCCEEECCSSCC-SS-CC---SCCTTCCEEE
T ss_pred EEECCCCc-CCcC-----CCCcCcccEEECcCCcCC-cc--cc-cCCCCCCCEEECCCCcC-Cc-cc---ccccccCEEE
Confidence 99999853 3321 122468999999988633 21 12 45788999999988743 21 11 1347899999
Q ss_pred ecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC-CcCCeEEcc
Q 012207 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC-TSLTSLRME 388 (468)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 388 (468)
+++|.+... ....++|++|+++++ .++. +. ...++|+.|++++|. ++. + ..+ ++|+.|+++
T Consensus 264 l~~N~l~~l-----~~~~~~L~~L~ls~N-~l~~--l~---~~~~~L~~L~l~~N~-l~~-----i-~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 264 VRDNYLTDL-----PELPQSLTFLDVSEN-IFSG--LS---ELPPNLYYLNASSNE-IRS-----L-CDLPPSLEELNVS 325 (454)
T ss_dssp CCSSCCSCC-----CCCCTTCCEEECCSS-CCSE--ES---CCCTTCCEEECCSSC-CSE-----E-CCCCTTCCEEECC
T ss_pred CCCCccccc-----CcccCcCCEEECcCC-ccCc--cc---CcCCcCCEEECcCCc-CCc-----c-cCCcCcCCEEECC
Confidence 999987641 113478999999985 4443 11 112689999999886 332 1 123 589999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHH-HH-------------HHHHhc
Q 012207 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GL-------------KHVGST 454 (468)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~-------------~~~~~~ 454 (468)
++. ++. +...+++|+.|++++|.++.... .+++|+.|++++| .++.. .+ ..+...
T Consensus 326 ~N~-l~~-----lp~~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 326 NNK-LIE-----LPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp SSC-CSC-----CCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------
T ss_pred CCc-ccc-----ccccCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccc
Confidence 854 442 22246899999999998875432 3688999999999 66641 01 111112
Q ss_pred CcccCeeecCCCC
Q 012207 455 CSMLKELDLYRFS 467 (468)
Q Consensus 455 ~~~L~~L~l~~c~ 467 (468)
+++|+.|++++|+
T Consensus 395 ~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 395 PQNLKQLHVETNP 407 (454)
T ss_dssp -------------
T ss_pred cCcCCEEECCCCc
Confidence 3788888888875
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=2.9e-18 Score=154.67 Aligned_cols=271 Identities=12% Similarity=0.041 Sum_probs=185.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
.++|++|+++++. ++..... .+..+++|++|+++++.+.......+.++++|++|+++++ .+..... ...++|
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 4789999999873 4433221 2347899999999999888766778889999999999985 4442221 113799
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCc-hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeE
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (468)
++|+++++...... ...+..+++|+.|+++++.... ...+..+..+ +|+.|+++++.+..... . ..++|++|
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~---~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-D---LPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-S---SCSSCSCC
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-c---ccCCCCEE
Confidence 99999987632211 1235678999999999874321 1233445555 89999999998765211 1 23699999
Q ss_pred ecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEc
Q 012207 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (468)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (468)
+++++ .++... ...+..+++|+.|++++|. ++..... ....+++|++|++++|. ++. +......+++|+.|++
T Consensus 199 ~l~~n-~i~~~~-~~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 199 HLDHN-KIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYL 271 (332)
T ss_dssp BCCSS-CCCCCC-TTSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEEC
T ss_pred ECCCC-cCCccC-HHHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEEC
Confidence 99985 444321 1234567999999999886 4332211 23478999999999864 542 2222337899999999
Q ss_pred cCCCCChhhHHhccc------CCCCCEEeeCCCCccCHH-HHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDE-GLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.++..+...+.. .++|+.|++++| .+... ........+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhccccc
Confidence 999999877666653 468999999999 45422 222344579999999999986
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1e-17 Score=158.53 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=130.6
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
+|+.|+++++.+.......+..+++|++|+++++. +..... +.. +++|+.|+++++.. .. +...++|+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~-l~~L~~L~Ls~N~l-~~------l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES-LSTLRTLDLNNNYV-QE------LLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTT-CTTCCEEECCSSEE-EE------EEECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--ccc-CCCCCEEEecCCcC-CC------CCCCCCcCE
Confidence 45555555555444434444455555555555532 221111 222 55555555555431 11 112255555
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecC
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 362 (468)
|+++++.. ....+ ..+++|+.|++++|.++......+. .+++|+.|+++++ .++......+...+++|+.|+++
T Consensus 104 L~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcC-CCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecC
Confidence 55555422 21111 2345666666666666544333332 4566777777663 44432222233356777777777
Q ss_pred CCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCc
Q 012207 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (468)
+|. ++.. .. ...+++|+.|+++++. ++.... .+. .+++|+.|++++|.++... ..+..+++|+.|++++| .
T Consensus 178 ~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~-~~~-~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N-~ 248 (487)
T 3oja_A 178 YNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGP-EFQ-SAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGN-G 248 (487)
T ss_dssp TSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECG-GGG-GGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTC-C
T ss_pred CCc-cccc--cc-cccCCCCCEEECCCCC-CCCCCH-hHc-CCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCC-C
Confidence 765 3322 11 1146788888888754 443211 233 7789999999999888643 44667889999999999 7
Q ss_pred cCHHHHHHHHhcCcccCeeecC
Q 012207 443 ITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 443 l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
+....+..+...+++|+.+.+.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 7755666677778888777663
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=9.6e-18 Score=150.39 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=129.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
.++++.|+++++ .++..+ .....+++|++|+++++.+. .....+.++++|++|+++++ .+... ...+.. +++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~l-p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFP--DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRAL-PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSCC--SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCC-CGGGGG-CTTC
T ss_pred ccceeEEEccCC-CchhcC--hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccC-cHHHhc-CcCC
Confidence 466777777664 233211 11224667777777776665 44445666677777777663 33311 112333 5666
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEe
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (468)
++|++++|....... ..+....+ ...+..+++|++|++++|.+.. .+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~~p--------~~~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~-lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTELP--------EPLASTDA----------SGEHQGLVNLQSLRLEWTGIRS-LPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCCC--------SCSEEEC-----------CCCEEESTTCCEEEEEEECCCC-CCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCccccC--------hhHhhccc----------hhhhccCCCCCEEECcCCCcCc-chHhhc-CCCCCCEEE
Confidence 666666543222100 00111100 0112346677777777766552 222222 566777777
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (468)
++++ .++. ++..+..+++|+.|++++|...... ......+++|++|++++|...... ...+ ..+++|+.|+++
T Consensus 213 L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~-p~~~-~~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTL-PLDI-HRLTQLEKLDLR 285 (328)
T ss_dssp EESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBC-CTTG-GGCTTCCEEECT
T ss_pred ccCC-CCCc--CchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhc-chhh-hcCCCCCEEeCC
Confidence 7764 3332 2233556677777777776543321 112245778888888876644321 1122 378888888888
Q ss_pred CCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 415 ENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+|.+....+..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 88777777777888888888888766
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=7.1e-18 Score=150.85 Aligned_cols=129 Identities=23% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHH
Q 012207 118 SSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV 197 (468)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 197 (468)
..+...+++|++|+++++ .+.......+..+++|++|+++++....... ...+++|++|+++++. ++..
T Consensus 27 ~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~l----- 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL----- 95 (317)
T ss_dssp HHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEEE-----
T ss_pred HHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-cccc-----
Confidence 344445566666666665 3444444456666666666666653211111 2235666666666542 2221
Q ss_pred HhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
...++|++|+++++.+..... ..+++|++|+++++ .+.......+.. +++|+.|+++++.
T Consensus 96 -~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N-~l~~~~~~~~~~-l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 96 -LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANN-KITMLRDLDEGC-RSRVQYLDLKLNE 155 (317)
T ss_dssp -EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSS-CCCSGGGBCTGG-GSSEEEEECTTSC
T ss_pred -cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCC-CCCCccchhhhc-cCCCCEEECCCCC
Confidence 133566666666655443221 12455666666553 233222112222 4555555555543
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=2.9e-17 Score=154.63 Aligned_cols=227 Identities=18% Similarity=0.096 Sum_probs=125.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
++++.|+++++ .+.......+..+++|++|+++++. +.......+. .+++|++|+++++. ++..+. ..+..+++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFN-GLASLNTLELFDNW-LTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSC-CSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCc-cCCcChhhcc-CcccCCEEECCCCc-CCccCh-hhhcccCCC
Confidence 45555555555 2333333345555666666665542 2222111121 25666666666542 322211 112356777
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
++|++++|.+.......+.++++|++|++++++.+.......+.. +++|+.|+++++...... .+..+++|+.|+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~ 224 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP----NLTPLVGLEELE 224 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSCC----CCTTCTTCCEEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccccc----cccccccccEEE
Confidence 777777776654444456667777777777765555443333333 677777777776532211 134556777777
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|+.|+++++ .++.. ....+..+++|+.|++++|
T Consensus 225 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHN-NLSSL-PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEEECCSS
T ss_pred CcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCC-cCCcc-ChHHhccccCCCEEEccCC
Confidence 7776 34444455667777777777777776654433333 5677777777764 33321 1122345677777777766
Q ss_pred C
Q 012207 365 R 365 (468)
Q Consensus 365 ~ 365 (468)
+
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=2.7e-17 Score=154.30 Aligned_cols=157 Identities=17% Similarity=0.094 Sum_probs=80.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|++++|.+.......+..+++|++|++++++.+.......+.. +++|++|+++++...... -+..+++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 208 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLREIP----NLTPLIK 208 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCSSCC----CCTTCSS
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCcccc----ccCCCcc
Confidence 45556666666655543333344556666666666544444332222333 566666666655422111 1334556
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|++|+++++ .++... ...+..+++|+.|
T Consensus 209 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 284 (440)
T 3zyj_A 209 LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERI 284 (440)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEE
T ss_pred cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCC-CCCccC-hhHhccccCCCEE
Confidence 666666665 33434444556666666666666665544333332 4566666666663 333211 1223345666666
Q ss_pred ecCCCC
Q 012207 360 DITCCR 365 (468)
Q Consensus 360 ~l~~~~ 365 (468)
++++|+
T Consensus 285 ~L~~Np 290 (440)
T 3zyj_A 285 HLHHNP 290 (440)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 666554
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=6.5e-18 Score=151.50 Aligned_cols=225 Identities=15% Similarity=0.195 Sum_probs=151.7
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
..++++.|+++++.+. .....+.++++|++|+++++ .+... ...+.. +++|++|+++++...
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~~l-p~~~~~-l~~L~~L~Ls~n~l~-------------- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLMEL-PDTMQQ-FAGLETLTLARNPLR-------------- 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCCCC-CSCGGG-GTTCSEEEEESCCCC--------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Cccch-hHHHhc-cCCCCEEECCCCccc--------------
Confidence 4589999999999877 45556777899999999884 33321 122333 666666666665421
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHH--------HhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG--------NWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.++..+..+++|++|++++|......+..+. ..+++|++|+++++ .++ .++..+.
T Consensus 141 --------------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~ 203 (328)
T 4fcg_A 141 --------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIA 203 (328)
T ss_dssp --------------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGG
T ss_pred --------------cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhc
Confidence 2223344555555555555443322222111 14789999999985 454 2444567
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (468)
.+++|++|++++|. ++. +......+++|++|++++|..... ....+ ..+++|+.|++++|.+....+..+..+++
T Consensus 204 ~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN-YPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB-CCCCT-TCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhh-hHHHh-cCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 88999999999987 432 222345789999999999775432 11122 37899999999999877776677889999
Q ss_pred CCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
|+.|++++|..++ .++.....+++|+.+.+..+
T Consensus 279 L~~L~L~~n~~~~--~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCC--CCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchh--hccHHHhhccCceEEeCCHH
Confidence 9999999994444 34555568999999987654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=4.2e-17 Score=145.46 Aligned_cols=253 Identities=19% Similarity=0.159 Sum_probs=139.6
Q ss_pred cCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCC----CChHHH-H-HHHhhCCCccEeeecccCCCCCCccc
Q 012207 148 EAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR----VTDLGV-E-LVALKCQEIRTLDLSYLPITEKCLPP 221 (468)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 221 (468)
..++|++|++.++....... +.. .|+.|+++++.. +..... . .-...+++|++|+++++.+.+.....
T Consensus 41 ~~~~L~~l~l~~n~l~~p~~---~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTEADLGQ---FTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTTCCCHH---HHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeecccccccHHH---HHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34678888777765411111 222 155556655321 222111 1 11125789999999999887666665
Q ss_pred c--ccCCCCCeeeecCCCCCChHHHHHHHh----cCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhH
Q 012207 222 V--VKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295 (468)
Q Consensus 222 l--~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 295 (468)
+ ..+++|++|+++++ .+... ...+.. ..++|++|+++++.. ....
T Consensus 115 ~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l---------------------------~~~~ 165 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHS---------------------------LNFS 165 (312)
T ss_dssp SSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSC---------------------------CCCC
T ss_pred HHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCC---------------------------ccch
Confidence 5 67888999998884 34332 122222 016666666666542 1122
Q ss_pred HHHhhcCCCCCeeEecCCcCChhH--HHHH-HHhCCCCCeEecccCCCCCH--HHHHHHHHhCCCCCeEecCCCCCCCHH
Q 012207 296 SKCLHNFPMLQSIKFEDCPVARSG--IKAI-GNWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYA 370 (468)
Q Consensus 296 ~~~l~~~~~L~~L~l~~~~~~~~~--~~~l-~~~~~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~ 370 (468)
+..+..+++|++|++++|.+.... +..+ ...+++|++|+++++ .++. .....++..+++|+.|++++|. ++..
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 223445556666666666544321 1121 024566666666664 3432 1122334456677777777665 3321
Q ss_pred HHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
........+++|++|+++++. ++ .+... -.++|++|++++|.+++.. .+..+++|+.|++++| .+++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~--~ip~~--~~~~L~~L~Ls~N~l~~~p--~~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LK--QVPKG--LPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CS--SCCSS--CCSEEEEEECCSSCCCSCC--CTTTSCEEEEEECTTC-TTTC
T ss_pred cchhhhhhcCCCCEEECCCCc-cC--hhhhh--ccCCceEEECCCCCCCCCh--hHhhCCCCCEEeccCC-CCCC
Confidence 100111235778888887754 44 11111 1168999999999888763 2778899999999998 6653
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=8.8e-17 Score=141.65 Aligned_cols=204 Identities=16% Similarity=0.070 Sum_probs=90.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++..+.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTG-LALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCC-ccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 45666666665555433344555566666666553 333222222322 5555555555543111110 01123344555
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+|+++++. +....+..+..+++|++|++++|.+.......+. .+++|++|+++++ .++... ...+..
T Consensus 109 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~--------- 175 (285)
T 1ozn_A 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGN-RISSVP-ERAFRG--------- 175 (285)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCEEC-TTTTTT---------
T ss_pred EEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCC-cccccC-HHHhcC---------
Confidence 55555442 2222233345556666666666655432222121 3455555555542 222110 011223
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+++|++|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 176 -----------------l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 176 -----------------LHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp -----------------CTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred -----------------ccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 4445555554432 2222111222 4455555555555555554444555555555555555
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=8.3e-17 Score=141.79 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=119.9
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCC
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPM 304 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (468)
.++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|++|+++++..+....+..+..+++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~-~~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRA-CRNLTILWLHSNVL-ARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCC-cCCccCHHHccc-CCCCCEEECCCCcc-ceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 457777777773 444333223333 66677777766532 1110 1112334455555555443222222333344444
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
|++|++.+|.+.... ...+..+++|++|++++|. ++.... .....+++|++
T Consensus 107 L~~L~l~~n~l~~~~---------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 157 (285)
T 1ozn_A 107 LHTLHLDRCGLQELG---------------------------PGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTH 157 (285)
T ss_dssp CCEEECTTSCCCCCC---------------------------TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCcCCEEC---------------------------HhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccE
Confidence 444444444333211 1123345666666666654 221111 11235778888
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecC
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++.... .....+++|+.|+++
T Consensus 158 L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 158 LFLHGNR-ISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLN 233 (285)
T ss_dssp EECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECC
T ss_pred EECCCCc-ccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEecc
Confidence 8887743 4432222233 7899999999999999887788889999999999999 8886333 345589999999999
Q ss_pred CCC
Q 012207 465 RFS 467 (468)
Q Consensus 465 ~c~ 467 (468)
+|+
T Consensus 234 ~N~ 236 (285)
T 1ozn_A 234 DNP 236 (285)
T ss_dssp SSC
T ss_pred CCC
Confidence 986
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=4.3e-15 Score=143.46 Aligned_cols=152 Identities=17% Similarity=0.034 Sum_probs=77.9
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (468)
.+++.|+++++. ++ .++.. ..++|+.|+++++ .+...+. .+++|++|+++++. ++.. ...+++|
T Consensus 40 ~~l~~L~ls~n~-L~--~lp~~--l~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~l-----p~~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LT--TLPDC--LPAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSL-----PVLPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CS--CCCSC--CCTTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCC-----CCCCTTC
T ss_pred CCCcEEEecCCC-cC--ccChh--hCCCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcC-----CCCCCCC
Confidence 457888887654 22 11111 1267888888877 3443221 46777777777754 3221 1136677
Q ss_pred cEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEE
Q 012207 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALN 258 (468)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 258 (468)
++|+++++. ++..+. .+++|+.|++++|.+... .. .+++|++|++++| .+.... ...++|+.|+
T Consensus 104 ~~L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~l~~l--p~--~l~~L~~L~Ls~N-~l~~l~-----~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSNP-LTHLPA-----LPSGLCKLWIFGNQLTSL--PV--LPPGLQELSVSDN-QLASLP-----ALPSELCKLW 167 (622)
T ss_dssp CEEEECSCC-CCCCCC-----CCTTCCEEECCSSCCSCC--CC--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEE
T ss_pred CEEECcCCc-CCCCCC-----CCCCcCEEECCCCCCCcC--CC--CCCCCCEEECcCC-cCCCcC-----CccCCCCEEE
Confidence 777776652 322111 456677777766655431 11 2366666666664 232211 1245666666
Q ss_pred ccCCcccChhhHHHHHhcCCccceEeecCC
Q 012207 259 LSKCQNISHVGLSSLIKGADYLQQLILAYS 288 (468)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 288 (468)
+.++.... . ...+++|+.|+++++
T Consensus 168 L~~N~l~~-l-----~~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 168 AYNNQLTS-L-----PMLPSGLQELSVSDN 191 (622)
T ss_dssp CCSSCCSC-C-----CCCCTTCCEEECCSS
T ss_pred CCCCCCCC-C-----cccCCCCcEEECCCC
Confidence 66554211 1 123445555555554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=139.65 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=139.5
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHh--cCCCCCEEEccCCcccChhhHHHHH-hcCCccceEeecCCCCCch---hHHHH
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLI-KGADYLQQLILAYSFWVSA---DLSKC 298 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~ 298 (468)
...++.+.+.++ .+.+..+..+.. ..++|++|+++++....... ..++ ..+++|++|+++++..... .....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 345666666663 344433332221 14668888887765322110 1111 5567888888887743221 11133
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHH--HHHhCCCCCeEecCCCCCCCHHH-HHHH
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF--VVQSHKELRKLDITCCRKITYAS-INSI 375 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 375 (468)
+..+++|++|++++|.+.......+. .+++|++|+++++......++.. ....+++|++|++++|..-.... ...+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 45788888888888887654443333 56788888888853333222222 12467888899998886322222 2223
Q ss_pred HhcCCcCCeEEccCCCCCCHHHHHHHHh--cCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 376 TKTCTSLTSLRMECCKLVSWEAFVLIGQ--QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
...+++|++|+++++. ++......+.. .+++|++|++++|.++... ..+ .++|+.|++++| +++. ++. ..
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~--~~~L~~L~Ls~N-~l~~--~~~-~~ 291 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-KGL--PAKLRVLDLSSN-RLNR--APQ-PD 291 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-SCC--CSCCSCEECCSC-CCCS--CCC-TT
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchh-hhh--cCCCCEEECCCC-cCCC--Cch-hh
Confidence 4577889999998854 44322111220 2378999999999888432 233 378999999999 8874 222 35
Q ss_pred cCcccCeeecCCCC
Q 012207 454 TCSMLKELDLYRFS 467 (468)
Q Consensus 454 ~~~~L~~L~l~~c~ 467 (468)
.+++|+.|++++|+
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 78999999999886
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=1.7e-15 Score=146.26 Aligned_cols=265 Identities=16% Similarity=0.088 Sum_probs=185.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
.+++.|+++++. ++..+ ..+ .++|++|++.++. ++. +...+++|++|+++++. ++..+. .+++|
T Consensus 40 ~~l~~L~ls~n~-L~~lp-~~l--~~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~lp~-----~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLP-DCL--PAHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQ-LTSLPV-----LPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CSCCC-SCC--CTTCSEEEECSCC-CSC-----CCCCCTTCCEEEECSCC-CSCCCC-----CCTTC
T ss_pred CCCcEEEecCCC-cCccC-hhh--CCCCcEEEecCCC-CCC-----CCCcCCCCCEEEcCCCc-CCcCCC-----CCCCC
Confidence 468999999873 44332 111 2799999999875 432 11247899999999874 443221 67899
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
++|++++|.+.... . .+++|+.|+++++ .+.... ..+++|++|+++++....- ....++|+.|+
T Consensus 104 ~~L~Ls~N~l~~l~--~--~l~~L~~L~L~~N-~l~~lp-----~~l~~L~~L~Ls~N~l~~l------~~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSNPLTHLP--A--LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDNQLASL------PALPSELCKLW 167 (622)
T ss_dssp CEEEECSCCCCCCC--C--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCC------CCCCTTCCEEE
T ss_pred CEEECcCCcCCCCC--C--CCCCcCEEECCCC-CCCcCC-----CCCCCCCEEECcCCcCCCc------CCccCCCCEEE
Confidence 99999999776422 2 5789999999985 444322 2368999999998863221 12457899999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. .. ++ ..+++|+.|++++|.+.... ...++|+.|+++++ .++. ++ ..+++|+.|++++|
T Consensus 168 L~~N~l-~~-l~---~~~~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N-~l~~--l~---~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 168 AYNNQL-TS-LP---MLPSGLQELSVSDNQLASLP-----TLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGN 231 (622)
T ss_dssp CCSSCC-SC-CC---CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSS
T ss_pred CCCCCC-CC-Cc---ccCCCCcEEECCCCCCCCCC-----CccchhhEEECcCC-cccc--cC---CCCCCCCEEEccCC
Confidence 988743 22 22 45689999999999876421 13579999999985 4442 11 23578999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
. ++... ..+++|+.|++++|. ++. + ...+++|+.|++++|.++.. +..+..+++|+.|++++| .++
T Consensus 232 ~-L~~lp-----~~l~~L~~L~Ls~N~-L~~--l---p~~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~ 297 (622)
T 3g06_A 232 R-LTSLP-----VLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLS 297 (622)
T ss_dssp C-CSCCC-----CCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCC
T ss_pred c-cCcCC-----CCCCcCcEEECCCCC-CCc--C---CcccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCC
Confidence 6 44321 467899999999864 542 1 11568999999999998854 356788999999999999 787
Q ss_pred HHHHHHH
Q 012207 445 DEGLKHV 451 (468)
Q Consensus 445 ~~~~~~~ 451 (468)
......+
T Consensus 298 ~~~~~~l 304 (622)
T 3g06_A 298 ERTLQAL 304 (622)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 6544433
No 79
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=4.1e-14 Score=128.36 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=137.8
Q ss_pred CCccceEeecCCCCCchhHHHHh----hc-CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 277 ADYLQQLILAYSFWVSADLSKCL----HN-FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.+.|+.|+++++. +.......+ .. .++|++|++++|.+++.+...+...+++|++|++++| .+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 4689999999984 555444333 32 3699999999999999998888877889999999995 788877666543
Q ss_pred ----hCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChh
Q 012207 352 ----SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDE 421 (468)
Q Consensus 352 ----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 421 (468)
..++|++|++++|. +++.+...++ ..+++|++|++++|. +++.+...+. ..+++|++|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 35889999999986 7777665553 468999999999965 8887765554 3678999999999999998
Q ss_pred hHHhcc----cCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 422 GLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 422 ~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
+...+. .+++|+.|++++| .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 776654 5799999999999 899998887764
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.7e-16 Score=150.11 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=76.0
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+++|++|+++++. +....... +..+++|+.|+++++. +.... .+..+++|++|+++++. ++... ..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~l~~l~~L~~L~Ls~N~-l~~l~------~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNV-LYETL--DLESLSTLRTLDLNNNY-VQELL------VGP 99 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-GTTCTTCCEEECTTSC-CEEEE--ECTTCTTCCEEECCSSE-EEEEE------ECT
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-HhCCCCCCEEEeeCCC-CCCCc--ccccCCCCCEEEecCCc-CCCCC------CCC
Confidence 34467777776653 22211122 2356677777776663 32211 15556666777666653 22211 135
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++. ++..+. ..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+...+++|+.
T Consensus 100 ~L~~L~L~~N~-l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TCCEEECCSSC-CCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCE
T ss_pred CcCEEECcCCc-CCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccE
Confidence 66666666653 222111 13456666666666655544445555666666666663 3333333333323566666
Q ss_pred EEccCCc
Q 012207 257 LNLSKCQ 263 (468)
Q Consensus 257 L~l~~~~ 263 (468)
|+++++.
T Consensus 174 L~Ls~N~ 180 (487)
T 3oja_A 174 LNLQYNF 180 (487)
T ss_dssp EECTTSC
T ss_pred EecCCCc
Confidence 6666554
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=6e-15 Score=131.41 Aligned_cols=229 Identities=16% Similarity=0.121 Sum_probs=130.7
Q ss_pred CCCcEEeccCCCCCChHHHHHHHh--hCCCccEeeecccCCCCCCcccc--ccCCCCCeeeecCCCCCChH----HHHHH
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDDD----GLASV 247 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~~l 247 (468)
..++.+.+..+ .+++..+..+.. .+++|++|+++++.+.......+ ..+++|++|+++++. +... ....+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 34666666664 344443332221 45779999999998877666666 778999999999854 3321 11222
Q ss_pred HhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHH---HHH
Q 012207 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK---AIG 324 (468)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~l~ 324 (468)
. .+++|++|+++++.. ....+..+..+++|++|++++|.+...... ...
T Consensus 142 ~-~~~~L~~L~Ls~n~l---------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHS---------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp T-BCSCCCEEEEECCSS---------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred h-hccCCCEEEeeCCCc---------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 2 366777777766542 111122334455666666666654432111 111
Q ss_pred HhCCCCCeEecccCCCCCH--HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc---CCcCCeEEccCCCCCCHHHHH
Q 012207 325 NWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYASINSITKT---CTSLTSLRMECCKLVSWEAFV 399 (468)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~ 399 (468)
..+++|++|++++| .++. .....++..+++|++|++++|. ++......+ .. +++|++|+++++. ++. +.
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~--lp 267 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ--VP 267 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS--CC
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCCC-CCc--hh
Confidence 24566777777664 3432 1112234566777777777665 322110001 12 2688888887744 441 11
Q ss_pred HHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
.. -.++|++|++++|.++... .+..+++|+.|++++| .+++
T Consensus 268 ~~--~~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 268 KG--LPAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp SC--CCSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSST-TTSC
T ss_pred hh--hcCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCC-CCCC
Confidence 11 2378999999999888642 2567889999999999 7664
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=1.3e-13 Score=125.05 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=140.9
Q ss_pred CCCCCEEEccCCcccChhhHHHH---Hhc-CCccceEeecCCCCCchhHHHHh-hcCCCCCeeEecCCcCChhHHHHHHH
Q 012207 251 CKSLKALNLSKCQNISHVGLSSL---IKG-ADYLQQLILAYSFWVSADLSKCL-HNFPMLQSIKFEDCPVARSGIKAIGN 325 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~ 325 (468)
.+.|+.|+++++. ++..+...+ +.. .++|++|+++++. +.+.....+ ..+++|++|++++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5789999999987 555444333 332 3699999999984 554444333 35678999999999999988887764
Q ss_pred ----hCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCCCCCH
Q 012207 326 ----WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSW 395 (468)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 395 (468)
..++|++|++++| .+++.+...+ +..+++|++|++++|. +++.++..+. ...++|++|++++|. +++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence 3578999999996 6877665544 4567999999999987 8877765544 457899999999964 888
Q ss_pred HHHHHHHh---cCCCCCEEEccCCCCChhhHHhcccCC--C---CCEEe--eCCCCccCHH
Q 012207 396 EAFVLIGQ---QCQYLEELDITENEVNDEGLKSISRCS--K---LSSLK--LGICSNITDE 446 (468)
Q Consensus 396 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~l~~~ 446 (468)
.+...+.. .+++|++|++++|.+++.+...+.... . |+.+. +.++ .+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 77666543 579999999999999999988876432 2 77777 6666 66654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=2.2e-14 Score=127.35 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=133.4
Q ss_pred ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh
Q 012207 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (468)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (468)
....+++|++|+++++ .+.... .+.. +++|+.|+++++....... +..+++|+.|+++++. +... ..+.
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~--~~~~-l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~--~~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE--GVQY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV--SAIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT--TGGG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC--GGGT
T ss_pred cHHHcCCcCEEEeeCC-CccCch--hhhc-cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc--hhhc
Confidence 3456889999999985 344322 3444 8999999999886332222 6678889999998874 3322 3577
Q ss_pred cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
.+++|++|++++|.+.+... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. +++... ...++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~--l-~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP--L-AGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTP---LANLS 173 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG--G-TTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSSC-CCCCGG---GTTCT
T ss_pred CCCCCCEEECCCCCCCCchh--h-cCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCCc-CCCChh---hcCCC
Confidence 88889999998888765432 3 36788888888885 44432 22 5577888888888875 433221 35678
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
+|+.|++++|. ++... .+ ..+++|+.|++++|.+++.. .+..+++|+.|++++| .++
T Consensus 174 ~L~~L~l~~n~-l~~~~--~l-~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 174 KLTTLKADDNK-ISDIS--PL-ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp TCCEEECCSSC-CCCCG--GG-GGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEE
T ss_pred CCCEEECCCCc-cCcCh--hh-cCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eee
Confidence 88888888754 43322 13 37788888888888887765 3677888888888888 565
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=6e-14 Score=124.57 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=146.1
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.. +..+..+++|++|+++++ .+..... +. .+++|++|+++++...... .+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n-~i~~~~~--~~-~l~~L~~L~L~~n~l~~~~----~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN-QITDLAP--LK-NLTKITELELSGNPLKNVS----AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GT-TCCSCCEEECCSCCCSCCG----GGTTCTT
T ss_pred HcCCcCEEEeeCCCccC--chhhhccCCCCEEEccCC-cCCCChh--Hc-cCCCCCEEEccCCcCCCch----hhcCCCC
Confidence 56799999999997764 446788999999999995 4544332 44 4899999999998733221 2567899
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. ... ..+..+++|++|++++|.+.+... + ..+++|++|+++++ .+++ +.. +..+++|+.|
T Consensus 109 L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l-~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTSTQI-TDV--TPLAGLSNLQVLYLDLNQITNISP--L-AGLTNLQYLSIGNA-QVSD--LTP-LANLSKLTTL 178 (308)
T ss_dssp CCEEECTTSCC-CCC--GGGTTCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEE
T ss_pred CCEEECCCCCC-CCc--hhhcCCCCCCEEECCCCccCcCcc--c-cCCCCccEEEccCC-cCCC--Chh-hcCCCCCCEE
Confidence 99999999853 332 237899999999999998876543 3 37899999999986 4553 222 6678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (468)
++++|. +++... ...+++|++|++++|. ++... .+ ..+++|+.|++++|.++...
T Consensus 179 ~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 179 KADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-ANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-TTCTTCCEEEEEEEEEECCC
T ss_pred ECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCccc--cc-cCCCCCCEEEccCCeeecCC
Confidence 999986 443221 4579999999999965 54332 23 38999999999999876643
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.2e-15 Score=133.63 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
.+|+.|++++|.++......+..+++|+.|++++|
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 46777777777777655455566777777777766
No 86
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.49 E-value=2.4e-14 Score=112.44 Aligned_cols=104 Identities=14% Similarity=0.240 Sum_probs=81.4
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhc---CCCCCEEEccCC-CCChhhHHhcccCC
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ---CQYLEELDITEN-EVNDEGLKSISRCS 430 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~l~~~~ 430 (468)
+|++|++++|. +++.++..+ ..|++|++|++++|..+++.++..+... +++|++|++++| .|||.++..+++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 57778887776 777777666 4688888888888888888888888732 457888888887 68888888888889
Q ss_pred CCCEEeeCCCCccCHHH--HHHHHhcCcccCe
Q 012207 431 KLSSLKLGICSNITDEG--LKHVGSTCSMLKE 460 (468)
Q Consensus 431 ~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~ 460 (468)
+|+.|++++|+++++.+ ...+.+.+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 99999999998898865 4456677888764
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=2.9e-15 Score=131.19 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=95.4
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
+..+++|++|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++|++|++++|. ++...+......
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~ 147 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVET-NLASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN 147 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTS-CCCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG
T ss_pred ccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCC-CccccC-chhcccCCCCCEEECcCCc-cceecCchhhcc
Confidence 44455566666665555433322222 4556666666653 222110 0013456777777777765 332212223346
Q ss_pred CCcCCeEEccCCCCCCH---HHHHHHHhcCCCCC-EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhc
Q 012207 379 CTSLTSLRMECCKLVSW---EAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGST 454 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 454 (468)
+++|++|++++|. ++. ..+..+. .++.|. .|++++|.++......+ ...+|+.|++++| .++... ......
T Consensus 148 l~~L~~L~Ls~N~-l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~-~~~~~~ 222 (276)
T 2z62_A 148 LTNLEHLDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVP-DGIFDR 222 (276)
T ss_dssp CTTCCEEECCSSC-CCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSS-CCSCCC-TTTTTT
T ss_pred CCCCCEEECCCCC-CCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc-CCCcccEEECCCC-ceeecC-HhHhcc
Confidence 7888888888754 433 3344333 445555 89999999987654333 3558999999999 787532 233457
Q ss_pred CcccCeeecCCCC
Q 012207 455 CSMLKELDLYRFS 467 (468)
Q Consensus 455 ~~~L~~L~l~~c~ 467 (468)
+++|+.|++++|+
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 9999999999886
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.44 E-value=1.2e-14 Score=127.80 Aligned_cols=201 Identities=14% Similarity=0.029 Sum_probs=109.6
Q ss_pred cccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhc
Q 012207 222 VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (468)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (468)
+.+++++++++++++ .+..... ...++++.|+++++.. .... ...+..+++|+.|+++++. +.... ....
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTKLQ--VDGT 75 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCEEE--CCSC
T ss_pred ccccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCCcC-CccC-HHHhhcCCCCCEEECCCCc-cCccc--CCCC
Confidence 456788888888873 4443221 1135788888887753 2111 1224556778888877763 22211 1156
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCc
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (468)
+++|+.|++++|.+.... . ....+++|++|+++++ .++.. ....+..+++|+.|++++|. ++... ...+..+++
T Consensus 76 l~~L~~L~Ls~N~l~~l~-~-~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~ 149 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLP-L-LGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPK 149 (290)
T ss_dssp CTTCCEEECCSSCCSSCC-C-CTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTT
T ss_pred CCcCCEEECCCCcCCcCc-h-hhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccC
Confidence 677777777777665221 1 1125567777777763 33321 01224456677777777664 33211 111234667
Q ss_pred CCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|+.|+++++. ++.... .....+++|+.|++++|.++... ..+...++|+.|++++|+
T Consensus 150 L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNN-LTELPA-GLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCc-CCccCH-HHhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCC
Confidence 7777776643 332111 11225667777777777666432 334455667777777663
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.5e-15 Score=128.86 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=120.6
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++++.|+++++.. .... ...+..+++|++|+++++. +.......+..+++|++|+++++.+.......+. .+++|
T Consensus 36 ~~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKL-SSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-QLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCC-SCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT-TCSSC
T ss_pred CCCCCEEECcCCCC-CeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc-cccCC
Confidence 35799999998763 2211 1124567899999998873 4333334457789999999999887654333332 67899
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++... ...+..+++|++|++++|. ++.... .....+++|++|+++++. ++......+. .+++|+.
T Consensus 112 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 185 (270)
T 2o6q_A 112 AELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPK-GVFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKT 185 (270)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCE
T ss_pred CEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCH-hHccCCcccceeEecCCc-CcEeChhHhc-cCCCcCE
Confidence 99999884 343211 2224567899999998875 332211 112467889999998854 4332222232 6788999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|++++|.++......+..+++|+.|++++|+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999988887665567778889999998884
No 90
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.4e-13 Score=108.19 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHh---CCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
.|++|++++|.+++.++..+. .+++|++|+|++|..+++.++..+... +++|++|++++|..+++.++..+. .++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 577777777777777777774 677888888888877888777776642 457888888888778888877764 578
Q ss_pred cCCeEEccCCCCCCHHH--HHHHHhcCCCCCE
Q 012207 381 SLTSLRMECCKLVSWEA--FVLIGQQCQYLEE 410 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~ 410 (468)
+|++|++++|+.+++.+ ...+...+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 88888888888777765 3444456666553
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.7e-14 Score=125.78 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=85.9
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
.....+++|+.|.+.++. +... ..+.. +++|++|+++++..... ..+..+++|++|+++++ .+.......+
T Consensus 35 ~~~~~l~~L~~L~l~~~~-i~~~--~~l~~-l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n-~l~~~~~~~~ 105 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGN-QLQSLPNGVF 105 (272)
T ss_dssp ECHHHHTTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred cccccccceeeeeeCCCC-cccc--ccccc-CCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCC-ccCccChhHh
Confidence 344456777777777743 3321 12333 67777777776652221 12334555555555554 2222222334
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|++|++++|.+....... +..+++|++|++++|. ++... ......+
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l 156 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGV---------------------------FDKLTNLTYLNLAHNQ-LQSLP-KGVFDKL 156 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT---------------------------TTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred cCCcCCCEEECCCCcCCccCHHH---------------------------hccCCCCCEEECCCCc-cCccC-HHHhccC
Confidence 44555555555555443222111 2234455555555443 22111 0111245
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 157 ~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 157 TNLTELDLSYNQ-LQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCC-cCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 555555555542 332111111 24566666666666666554444555666666666666
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.3e-13 Score=113.90 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+++|+.|+++++. +. .++ .+..+++|++|++++|.+.+.. .+. .+++|++|+++++ .+++.. ...+..+++|
T Consensus 43 l~~L~~L~l~~n~-i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN-VT-DLT-GIEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMGK-DVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC-CS-CCT-TGGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEECT-TCBGGG-SCCCTTCTTC
T ss_pred cCCccEEeccCCC-cc-ChH-HHhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeECC-ccCccc-ChhhcCCCCC
Confidence 3566777776652 22 112 3556666666666666544321 222 4556666666653 333211 1112344555
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEe
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (468)
+.|++++|. +++.....+ ..+++|++|++++|..+++.. .+ ..+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 115 ~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 555555544 332222222 345555555555544233221 12 24555555555555555432 344555555555
Q ss_pred eCCC
Q 012207 437 LGIC 440 (468)
Q Consensus 437 l~~~ 440 (468)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 5555
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=4.1e-13 Score=118.05 Aligned_cols=169 Identities=20% Similarity=0.174 Sum_probs=100.2
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|+.|+++++......+ +..+++|+.|+++++. +..... +..+++|+.|++++|.+.+.. .+ ..+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLS--SL-KDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGG--GG-TTCTTC
T ss_pred cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCCh--hh-ccCCCC
Confidence 5678888887765322211 4556777788777763 322222 667777777777777766522 22 256777
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .+++. ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. +++... + ..+++|+.
T Consensus 115 ~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~--l-~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--L-AGLTKLQN 182 (291)
T ss_dssp CEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG--G-TTCTTCCE
T ss_pred CEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh--h-cCCCccCE
Confidence 77777764 34331 124456777777777665 3322 123456777777777653 333221 2 26677777
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|++++|.+++. ..+..+++|+.|++++| .++
T Consensus 183 L~L~~N~i~~l--~~l~~l~~L~~L~l~~n-~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECL 213 (291)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEEEEEE-EEE
T ss_pred EECCCCcCCCC--hhhccCCCCCEEECcCC-ccc
Confidence 77777766664 23566777777777776 544
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=1.3e-13 Score=120.17 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=16.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
.+++|++|++++|.+.......+..+++|++|++++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 444455555554444433333334444455555444
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.32 E-value=3.3e-14 Score=121.57 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=62.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC---eeeecCCCCCChHHHHHHHhcC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE---DLVLEGCHGIDDDGLASVEYSC 251 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~ 251 (468)
+++|++|+++++..++..+. ..+..+++|++|+++++.+.. +..+..+++|+ +|+++++..+.......+.. +
T Consensus 79 l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l 154 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-L 154 (239)
T ss_dssp CTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCS--CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-T
T ss_pred CcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCcc--ccccccccccccccEEECCCCcchhhcCcccccc-h
Confidence 45555555554222322111 112256677777777766543 22355556665 77777642444333222333 6
Q ss_pred CCCC-EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcC-CCCCeeEecCCcCC
Q 012207 252 KSLK-ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVA 316 (468)
Q Consensus 252 ~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 316 (468)
++|+ .|+++++.. ..... ..+.. ++|+.|+++++..+.......+..+ ++|+.|+++++.++
T Consensus 155 ~~L~~~L~l~~n~l-~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 155 CNETLTLKLYNNGF-TSVQG-YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp BSSEEEEECCSCCC-CEECT-TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hcceeEEEcCCCCC-cccCH-hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 6666 666665542 11100 01111 4555555555432332222333444 45555555554443
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=5.1e-12 Score=104.25 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
+++|++|+++++ .++... ....+++|++|+++++.+....+..+..+++|++|+++++ .+.+.....+.. +++|
T Consensus 65 l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~-l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINT-LPKV 138 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTT-CSSC
T ss_pred CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhh-CCCC
Confidence 555666666555 222221 1235677777777777766555666667777777777773 455444455554 6777
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcC
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV 315 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 315 (468)
++|+++++..+.+.. .+..+++|+.|+++++. +.+. . .+..+++|++|++.++.+
T Consensus 139 ~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcCh-H-HhccCCCCCEEEeeCccc
Confidence 777777665333221 23444555555555542 1111 1 344445555555555443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=1.6e-12 Score=125.41 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|+.|+++++...... -+..+++|+.|+++++. +..... +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS--SLK-DLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT--TST-TCTTC
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh--hhc-cCCCC
Confidence 677888888876532211 14567788888887763 332222 677788888888887766422 222 56778
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
+.|+++++ .+.+ +. .+..+++|+.|++++|. ++.. .....+++|+.|++++|. ++.... + ..+++|+.
T Consensus 112 ~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~--l-~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHN-GISD--IN-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--L-AGLTKLQN 179 (605)
T ss_dssp CEEECTTS-CCCC--CG-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG--G-TTCTTCCE
T ss_pred CEEEecCC-CCCC--Cc-cccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh--h-ccCCCCCE
Confidence 88888774 3432 11 24567778888887765 3322 223467777777777754 332211 2 36777777
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
|+|++|.+++. ..+..+++|+.|++++| .++.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 77777777664 34667777777777777 5543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=5.2e-12 Score=111.00 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=126.3
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
.....+++|+.|+++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++. +.. ...+
T Consensus 40 ~~~~~l~~L~~L~l~~~~-i~~~--~~~~~-l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~~l 108 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKD--LSSL 108 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCC--GGGG
T ss_pred cchhhcCcccEEEccCCC-cccC--hhHhc-CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCC--Chhh
Confidence 344568899999998853 4332 22444 8999999999886433222 6678899999999874 332 2347
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|++|++++|.+.+. ..+. .+++|+.|+++++ .+++. ..+..+++|+.|++++|. +++... ...+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l 177 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 177 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---hcCC
Confidence 8889999999999987764 2233 6789999999985 45432 345678999999999886 443322 4578
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHH
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (468)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+++.+..
T Consensus 178 ~~L~~L~L~~N~-i~~l--~~l~-~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 178 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEEEEEEEEECCCEE
T ss_pred CccCEEECCCCc-CCCC--hhhc-cCCCCCEEECcCCcccCCccc
Confidence 999999999864 5542 2333 789999999999887765433
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=2.7e-14 Score=122.05 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=102.3
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
++|++|+++++ .+.......+.. +++|++|+++++..+.... ...+..+++|++|+++++..+.......+..+++|
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSN-LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTT-CTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCC-cceEECHHHccC-CCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 36777777763 344332222333 5666666666553121110 00123344555555544212322222233344444
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC---eEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR---KLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|++++|.+.. ++. +..+++|+ .|++++|..++..... ....+++|
T Consensus 108 ~~L~l~~n~l~~----------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L 157 (239)
T 2xwt_C 108 KFLGIFNTGLKM----------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNE 157 (239)
T ss_dssp CEEEEEEECCCS----------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSS
T ss_pred CEEeCCCCCCcc----------------------------ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcc
Confidence 444444443332 111 23344555 6666665223321111 12356777
Q ss_pred C-eEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhcccC-CCCCEEeeCCCCccCHHHHHHHHhcCcccC
Q 012207 383 T-SLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (468)
Q Consensus 383 ~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 459 (468)
+ +|+++++. ++......+ ..++|+.|++++| .++......+..+ ++|+.|++++| .++. ++.. .+++|+
T Consensus 158 ~~~L~l~~n~-l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~--l~~~--~~~~L~ 229 (239)
T 2xwt_C 158 TLTLKLYNNG-FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTA--LPSK--GLEHLK 229 (239)
T ss_dssp EEEEECCSCC-CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCC--CCCT--TCTTCS
T ss_pred eeEEEcCCCC-CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-cccc--CChh--HhccCc
Confidence 7 77777643 432111111 2267888888888 4777665667777 88888888888 6663 2221 577888
Q ss_pred eeecCCCC
Q 012207 460 ELDLYRFS 467 (468)
Q Consensus 460 ~L~l~~c~ 467 (468)
.|++.+|.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 88888774
No 100
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.29 E-value=6.4e-13 Score=115.73 Aligned_cols=61 Identities=18% Similarity=0.044 Sum_probs=29.1
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n 167 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNN 167 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC-CcccceeEecCC
Confidence 4555666666655554444444455556666666553 232222111222 455555555544
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=4.2e-13 Score=115.53 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=111.7
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
++++.|+++++ .+.......+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLANN-QLASL-PLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECCCC-ccccc-ChhHhcccCCCC
Confidence 57999999987 44445555678899999999999987764443333 6789999999984 44421 122345678999
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
+|++++|. ++.... .....+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++
T Consensus 111 ~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 111 KLYLGGNQ-LKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp EEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCc-CCCcCh-hHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 99999875 442211 122467899999998853 5432222233 6789999999999888776666778899999999
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
++| .++
T Consensus 187 ~~N-~~~ 192 (251)
T 3m19_A 187 FGN-QFD 192 (251)
T ss_dssp CSC-CBC
T ss_pred eCC-cee
Confidence 998 554
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=1.1e-12 Score=112.99 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=108.9
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++++.|+++++...... ...+..+++|++|+++++ .+.......+..+++|++|++++|.+.......+. .+++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-HLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred CCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhc-ccCCC
Confidence 357999999987632211 122456789999999987 45555555678889999999999987754433333 67899
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++.. ....+..+++|+.|++++|. ++.... .....+++|++|+++++. ++......+ ..+++|+.
T Consensus 110 ~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 183 (251)
T 3m19_A 110 DKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAF-DRLGKLQT 183 (251)
T ss_dssp CEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCE
T ss_pred CEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHH-hCCCCCCE
Confidence 99999984 44421 12224567899999999875 442221 123467899999999854 443222223 37889999
Q ss_pred EEccCCCCChh
Q 012207 411 LDITENEVNDE 421 (468)
Q Consensus 411 L~l~~~~~~~~ 421 (468)
|++++|.++..
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999887654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=1.6e-11 Score=118.43 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=132.0
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
..+..+++|+.|+++++. +.... .+.. +++|+.|+++++....... +..+++|+.|+++++.. .. +..+
T Consensus 37 ~~~~~L~~L~~L~l~~n~-i~~l~--~l~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-~~--l~~l 105 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSD-IKSVQ--GIQY-LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKI-KD--LSSL 105 (605)
T ss_dssp ECHHHHTTCCCCBCTTCC-CCCCT--TGGG-CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CTTS
T ss_pred cchhcCCCCCEEECcCCC-CCCCh--HHcc-CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCC-CC--Chhh
Confidence 345578999999999854 44322 3444 9999999999986433222 67889999999999843 32 2367
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|+.|++++|.+.+. ..+. .+++|+.|+|++| .++.. ..+..+++|+.|++++|. +..... ...+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l 174 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 174 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEEecCCCCCCC--cccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccC
Confidence 8899999999999998763 2233 7899999999985 45542 346678999999999986 443222 4579
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhc
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 426 (468)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+...+...+
T Consensus 175 ~~L~~L~Ls~N~-i~~l--~~l~-~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEECCSEEEECCCCCCC
T ss_pred CCCCEEECcCCC-CCCC--hHHc-cCCCCCEEEccCCcCcCCccccc
Confidence 999999999965 5542 3343 78999999999998877554433
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.22 E-value=5.1e-13 Score=117.31 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=145.2
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++++++++.++.. .... ....++++.|+++++ .+....+..+..+++|++|+++++.++..... ..+++|
T Consensus 9 l~~l~~l~~~~~~l-~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNL-TALP----PDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCC-SSCC----SCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred cCCccEEECCCCCC-CcCC----CCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 68899999987652 2211 112368999999998 45555566788999999999999987754332 368999
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++. ++..+..+++|+.|++++|. ++.... ..+..+++|++|+++++. ++......+ ..+++|+.
T Consensus 80 ~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 152 (290)
T 1p9a_G 80 GTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLL-TPTPKLEK 152 (290)
T ss_dssp CEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCE
T ss_pred CEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEECCCCC-CCccChhhc-ccccCCCE
Confidence 99999985 4542 33445678999999999886 432211 223468999999999854 543222222 37899999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|++++|.++......+..+++|+.|++++| .++. ++......++|+.|++.+|+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCC
Confidence 999999998876666778999999999999 8873 44434467899999999987
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.21 E-value=3.4e-11 Score=108.19 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCCCCEEEccCCcc-------cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHH
Q 012207 251 CKSLKALNLSKCQN-------ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (468)
Q Consensus 251 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (468)
+++|+.|.+.+... .....+..++..+|+|++|.+.++.... .. .+ .+++|++|.+..+.+++..+..+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~-~~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IG-KK-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CC-SC-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ec-cc-cCCCCcEEEEecCCCChHHHHHH
Confidence 78999999865421 1112355677788899999997763221 11 12 36788888888888888877777
Q ss_pred HH-hCCCCCeEecccCCC--CCH---HHHHHHH--HhCCCCCeEecCCCCCCCHHHHHHHHh--cCCcCCeEEccCCCCC
Q 012207 324 GN-WHGSLKELSLSKCSG--VTD---EELSFVV--QSHKELRKLDITCCRKITYASINSITK--TCTSLTSLRMECCKLV 393 (468)
Q Consensus 324 ~~-~~~~L~~L~l~~~~~--~~~---~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 393 (468)
.. .+|+|++|+|+.+.. ..+ ..+...+ ..+|+|+.|.+.+|. +.+.....++. .+++|++|+++. +.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCC
Confidence 64 578888888753110 011 1111112 246788888887765 55444444432 467788888865 457
Q ss_pred CHHHHHHHH---hcCCCCCEEEccCCCCChhhHHhccc-CCCCCEEeeCCC
Q 012207 394 SWEAFVLIG---QQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGIC 440 (468)
Q Consensus 394 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 440 (468)
++.+...+. ..+++|+.|++++|.+++.+...+.. + ...++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 776665554 24677788888777777777776664 3 345677666
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.20 E-value=9e-11 Score=105.45 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=81.5
Q ss_pred HHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh--cCCCCCeeEecCC--c-CChh---
Q 012207 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH--NFPMLQSIKFEDC--P-VARS--- 318 (468)
Q Consensus 247 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~-~~~~--- 318 (468)
+...+|+|+.|.+.++...... . ...++|++|++..+ .+.......+. .+|+|++|+|..+ . ..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~---~--~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIG---K--KPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCC---S--CBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCceec---c--ccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3333667777777654211111 1 12566777777655 34444444444 5667777766421 1 1111
Q ss_pred HHHHHH--HhCCCCCeEecccCCCCCHHHHHHHHH--hCCCCCeEecCCCCCCCHHHHHHHHh---cCCcCCeEEccCCC
Q 012207 319 GIKAIG--NWHGSLKELSLSKCSGVTDEELSFVVQ--SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (468)
Q Consensus 319 ~~~~l~--~~~~~L~~L~l~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (468)
.+..+. ..+|+|+.|++.+| .+.+.+...+.. .+|+|++|++++|. +++.+...+.. .+++|+.|+++.|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-
Confidence 111111 13567777777664 344433333332 34667777776554 66655544442 3566777777664
Q ss_pred CCCHHHHHHHHhcCCCCCEEEccCCC
Q 012207 392 LVSWEAFVLIGQQCQYLEELDITENE 417 (468)
Q Consensus 392 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (468)
.+++.+...+...+ ...++++.+.
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 36666666665333 3456666554
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1.9e-12 Score=116.26 Aligned_cols=290 Identities=14% Similarity=0.049 Sum_probs=157.0
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccccc----
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK---- 224 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---- 224 (468)
++++++|.+.+ .+....+..+...+++|+.|+++++. +...... ....+.++.+.+..+.+.+ ..+..
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~~I~~---~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMANFVPA---YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTTEECT---TTTEEEETT
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcce-eEEecCc--cccccccccccccccccCH---HHhcccccc
Confidence 34677777776 34555555555557778888887653 2200000 0011222333333332222 22334
Q ss_pred ----CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc--cChhhHHHHHhcCCccceEeecCCCC---CchhH
Q 012207 225 ----LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFW---VSADL 295 (468)
Q Consensus 225 ----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~ 295 (468)
+++|+++.+.. .+......++.. |++|+.+++.++.. +.+.. +..+.++..+....... .....
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccCCCcEEECCc--cccchhHHHhhc-CcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccc
Confidence 77788877776 344333333444 78888888876541 22211 22344444444332100 00000
Q ss_pred HHHhhcCCCCC-eeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHH
Q 012207 296 SKCLHNFPMLQ-SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 296 ~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
...+..+..|+ .+.+.....-............++..+.+.+ .+....+..+...|++|+++++++|. ++..+-.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~- 244 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDF- 244 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTT-
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHh-
Confidence 01122344555 3444332211111111111245777787776 35666666666678999999998754 3322211
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
.+.+|++|+.+++... ++.-+-..+. .|++|+ .+++.+ .++..+...+..|++|+.|++.++ .++..+-.. +.
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a-F~ 318 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDEL-FG 318 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTT-TC
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhh-hc
Confidence 2246889999999762 4433333333 889999 999987 677766677888999999999887 776533333 34
Q ss_pred cCcccCeeec
Q 012207 454 TCSMLKELDL 463 (468)
Q Consensus 454 ~~~~L~~L~l 463 (468)
+|++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 7899998864
No 108
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.18 E-value=9.3e-10 Score=89.23 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=95.4
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHHHHh---cCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (468)
+.+..+....++|++|++++|..+++.+...+.. ..++|++|++++|. +++.+...++. ..++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 3444455567899999999854788877665544 45789999999886 88877655543 4688999999885
Q ss_pred CCCHHHHHHHHh---cCCCCCEEEc--cCCCCChhhHHhcc----cCCCCCEEeeCCCCccCHHH
Q 012207 392 LVSWEAFVLIGQ---QCQYLEELDI--TENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEG 447 (468)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~ 447 (468)
.+++.+...++. ..++|++|++ ++|.+++.+...+. ..++|++|++++| .+++.+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 488888776654 4568999999 77899988766654 4688999999998 787665
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=9e-12 Score=97.71 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=83.4
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
++|++|+++++ .+++..++..+..+++|+.|++++|. ++.. .....+++|++|++++|. ++.. +......+++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCC
Confidence 45555555553 23211122333456677777777664 3322 223467888888888754 4432 3334436889
Q ss_pred CCEEEccCCCCChhh-HHhcccCCCCCEEeeCCCCccCHHHH--HHHHhcCcccCeeecCC
Q 012207 408 LEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYR 465 (468)
Q Consensus 408 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~ 465 (468)
|++|++++|.+++.. +..+..+++|+.|++++| .++.... ......+|+|+.|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999888753 366778999999999999 7775332 23556799999998864
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=9.3e-12 Score=107.57 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=94.7
Q ss_pred hcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCC
Q 012207 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (468)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 354 (468)
..+++|+.|+++++. +.. +. .+..+++|++|++++|.+.+... + ..+++|++|+++++ .+++ ++.+. . +
T Consensus 38 ~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l-~~l~~L~~L~L~~N-~l~~--l~~~~-~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQISDLSP--L-KDLTKLEELSVNRN-RLKN--LNGIP-S-A 106 (263)
T ss_dssp HHHTTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G-TTCSSCCEEECCSS-CCSC--CTTCC-C-S
T ss_pred hhcCcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccCCChh--h-ccCCCCCEEECCCC-ccCC--cCccc-c-C
Confidence 345788888888773 322 11 56778888888888887765443 3 36778888888874 3432 11111 1 6
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
+|+.|++++|. ++.. . ....+++|+.|+++++. +++. ..+. .+++|+.|++++|.+++. ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~-l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--D-SLIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSC-CSBS--G-GGTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCc-cCCC--h-hhcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 78888888775 4332 1 13467778888887744 4432 2233 677788888888777765 55667777888
Q ss_pred EeeCCCCccC
Q 012207 435 LKLGICSNIT 444 (468)
Q Consensus 435 L~l~~~~~l~ 444 (468)
|++++| .++
T Consensus 177 L~l~~N-~~~ 185 (263)
T 1xeu_A 177 IDLTGQ-KCV 185 (263)
T ss_dssp EEEEEE-EEE
T ss_pred EeCCCC-ccc
Confidence 888777 554
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=4.1e-12 Score=101.93 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=62.1
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCS 430 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 430 (468)
.+++|+.|++++|. ++.. .....+++|++|++++|. ++.. +......+++|+.|++++|.+++.. +..+..++
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 44555555555544 2221 122345666666666644 3321 2233335677777777777776642 24566677
Q ss_pred CCCEEeeCCCCccCHHHH--HHHHhcCcccCeeecCCCC
Q 012207 431 KLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 467 (468)
+|+.|++++| .++.... ......+|+|+.|++.+|+
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777777 6654221 1245567777777777764
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.8e-12 Score=116.33 Aligned_cols=292 Identities=13% Similarity=0.061 Sum_probs=171.6
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhh--
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALK-- 200 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 200 (468)
.+++++|.+++. +....+..+.. +++|+.|+++++. +...... ...++.++.+.+... .+.+. .+..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~-~I~~~----aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMAN-FVPAY----AFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTT-EECTT----TTEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCc--ccccccccccccccc-ccCHH----Hhcccc
Confidence 457899999874 55566677777 8999999999865 3200000 001222222322221 22221 1235
Q ss_pred ------CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCccc-ChhhH-HH
Q 012207 201 ------CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-SHVGL-SS 272 (468)
Q Consensus 201 ------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~-~~ 272 (468)
|++|+.+++.. .+.......+..+++|+.+.+..+ .+......++.. +.++..+........ ....+ ..
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcC-CCceEEecCcchhhhhcccccccc
Confidence 88888888887 555444456677888888888873 333322233333 555665554431100 00000 00
Q ss_pred HHhcCCccc-eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 273 LIKGADYLQ-QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 273 ~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.+..+..|+ .+.+.....+.......-....+++.+.+.+. +....+..+...+++|++++++++ .++..+ ...+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-Hhhhh
Confidence 022344555 44554433333333322224557778877764 555666666667899999999873 343221 22356
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC-eEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (468)
+|++|+++++.++ ++..+-. .+.+|++|+ .+.+.. .++.-+-..+. .|++|+.+++.++.++..+...+..++
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred CCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCCCccCccchhhhcCCc
Confidence 7899999999865 3322221 224789999 999975 34433333343 899999999999999988888899999
Q ss_pred CCCEEee
Q 012207 431 KLSSLKL 437 (468)
Q Consensus 431 ~L~~L~l 437 (468)
+|+.|..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9999863
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.8e-12 Score=124.33 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=109.5
Q ss_pred hHHHHhhcCCCCCeeE-ecCCcCC--------hhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 294 DLSKCLHNFPMLQSIK-FEDCPVA--------RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 294 ~~~~~l~~~~~L~~L~-l~~~~~~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
..+..+..+++|+.|+ +..+.+. ...+..+ ....|+.|+++++ .++. ++. +..+++|+.|++++|
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc
Confidence 4455566667777776 4443221 1122222 2347999999985 5553 344 667899999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCCCCCEEeeCCCCcc
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l 443 (468)
. ++ .++.....+++|+.|+++++. ++. ++.+. .+++|+.|++++|.++... +..+..+++|+.|++++| .+
T Consensus 474 ~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l 545 (567)
T 1dce_A 474 R-LR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SL 545 (567)
T ss_dssp C-CC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GG
T ss_pred c-cc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cC
Confidence 6 44 233344579999999999854 553 33444 8999999999999998875 678889999999999999 77
Q ss_pred CHH--HHHHHHhcCcccCeeec
Q 012207 444 TDE--GLKHVGSTCSMLKELDL 463 (468)
Q Consensus 444 ~~~--~~~~~~~~~~~L~~L~l 463 (468)
+.. ....+...+|+|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 642 23345567999999864
No 114
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.10 E-value=2.9e-09 Score=86.30 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=94.1
Q ss_pred chhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCC
Q 012207 292 SADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCC 364 (468)
Q Consensus 292 ~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~ 364 (468)
...+...+...++|++|++++| .+.+.+...++. ..++|++|+|+++ .+++.+...+ +...++|++|++++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445666778888999999988 888887777664 3568899999884 6887775544 344578999999887
Q ss_pred CCCCHHHHHHHHh---cCCcCCeEEc--cCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChhh
Q 012207 365 RKITYASINSITK---TCTSLTSLRM--ECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 365 ~~~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~ 422 (468)
. +++.+...++. ..++|++|++ ++ +.+++.+...+. ...++|++|++++|.+++.+
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 6 88887666654 4578999999 55 558887755544 35678999999888887765
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=3.2e-13 Score=122.35 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=23.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 237 (468)
+++++|+++++.++......+.++++|++|+++++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 567777777777664333456667777777777743
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=3.5e-10 Score=88.52 Aligned_cols=129 Identities=19% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCccEeeecccCCC-CCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 202 QEIRTLDLSYLPIT-EKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 202 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
++|+.|+++++.+. ......+..+++|++|+++++ .+... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPK-LNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCC-CTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhc-CCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 45666666666554 222233345666666666653 33322 22222 55666666655542221 22333445555
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHH--HHHHHhCCCCCeEecc
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLS 336 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~ 336 (468)
+.|+++++....-..+..+..+++|++|++++|.+++... ......+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555532211233455566666666666666544322 1222245666666554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=1.1e-10 Score=100.90 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.++..+++++ ..+.+.. .+.. +++|+.|+++++.. .... .+..+++|+.|+++++. +..... +..+++|
T Consensus 19 ~~l~~l~l~~-~~i~~~~--~~~~-l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 19 ANAVKQNLGK-QSVTDLV--SQKE-LSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHTC-SCTTSEE--CHHH-HTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSC
T ss_pred HHHHHHHhcC-CCccccc--chhh-cCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCCc-cCCChh--hccCCCC
Confidence 3444455554 2333222 2333 78899999998753 3221 25667899999998874 333322 7888999
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.|++++|.+.+.. .+. . ++|++|+++++ .+++. . .+..+++|+.|++++|. +++.. ....+++|+.|
T Consensus 88 ~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L 155 (263)
T 1xeu_A 88 EELSVNRNRLKNLN--GIP-S-ACLSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVL 155 (263)
T ss_dssp CEEECCSSCCSCCT--TCC-C-SSCCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEE
T ss_pred CEEECCCCccCCcC--ccc-c-CcccEEEccCC-ccCCC--h-hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEE
Confidence 99999999876522 121 2 78999999985 55542 2 25578899999999886 44332 23578999999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (468)
+++++. +++. ..+ ..+++|+.|++++|.++...
T Consensus 156 ~L~~N~-i~~~--~~l-~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 156 DLHGNE-ITNT--GGL-TRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ECTTSC-CCBC--TTS-TTCCCCCEEEEEEEEEECCC
T ss_pred ECCCCc-Ccch--HHh-ccCCCCCEEeCCCCcccCCc
Confidence 998854 5443 233 37889999999998776653
No 118
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=2.7e-10 Score=70.56 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
....+..||+||+.+||+ |++ .+|+.+++.|||+|+.++..
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 345799999999999999 997 99999999999999998864
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.00 E-value=1.4e-11 Score=103.35 Aligned_cols=151 Identities=12% Similarity=0.108 Sum_probs=95.2
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.++++++. +. .++..+ .+.++.|+++++.+...........+++|++|+++++ .++... ...+..+++|++|+
T Consensus 14 ~~l~~s~n~-l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQK-LN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSC-CS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEE
T ss_pred CEeEeCCCC-cc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEE
Confidence 467776652 22 122111 2467899999988765432222236788999999874 454321 12345678888888
Q ss_pred cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+++|. ++.... ..+..+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 88 Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 88 LTSNR-LENVQH-KMFKGLESLKTLMLRSNR-ITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCSSC-CCCCCG-GGGTTCSSCCEEECTTSC-CCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCc-cCccCH-hHhcCCcCCCEEECCCCc-CCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 88876 332211 123467888888888744 4432222233 6788888888888888776667777888888888888
Q ss_pred C
Q 012207 441 S 441 (468)
Q Consensus 441 ~ 441 (468)
+
T Consensus 164 ~ 164 (220)
T 2v70_A 164 P 164 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.98 E-value=4.5e-12 Score=114.81 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=115.6
Q ss_pred CCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCcc
Q 012207 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (468)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (468)
++++|+++++ .++..+..++..+++|++|+++++...+...... ...++++.++.+.++..++.... ..+..+++|+
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~ 107 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQ 107 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCC
T ss_pred CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcccCCcccccCc-hhhhhccccc
Confidence 4455555544 2333332334445555555555543211111111 11244444433332223322211 1123677888
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
+|+++++.+.......+....++..+++.++..+.......+......++.|+++++.. ... ..-....++|+++.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i--~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEI--HNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEE--CTTSSTTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCC--ChhhccccchhHHhh
Confidence 88888887665444444455667777776655555433333333234677888887652 211 111123456788888
Q ss_pred cCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
.++..+.......+..+++|+.|++++|.++.-... .+.+|++|.+.++..+.. ++. +..+++|+.+++.+
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNLKK--LPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEEECSC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCCcCccChh----hhccchHhhhccCCCcCc--CCC-chhCcChhhCcCCC
Confidence 765455444444567778888888888876643221 345677777666544332 121 34567777777754
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=1.6e-11 Score=102.36 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=28.2
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (468)
++|++|+++++ .+.......+..+++|++|+++++.+.......+. .+++|++|++++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLST 85 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcC-CCCCcCEEECCC
Confidence 45666666665 23323333345556666666666555432211111 345555555554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.97 E-value=5.3e-10 Score=89.51 Aligned_cols=131 Identities=19% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCccEeeecccCCCC-CCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 202 QEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
++|++|+++++.+.+ .....+..+++|++|+++++. +... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~-l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPK-LPKLKKLELSENRIFGG--LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCC-CSSCCEEEEESCCCCSC--CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhcc-CCCCCEEECcCCcCchH--HHHHHhhCCCC
Confidence 455566665555542 122223455566666665532 3322 12222 45555555555442211 12233345555
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHH--HHHHHhCCCCCeEecccC
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~ 338 (468)
+.|+++++....-.....+..+++|++|++++|.+..... ......+++|++|+++++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 5555555422111122445566666666666666543322 112224556666666553
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.96 E-value=3.7e-11 Score=109.20 Aligned_cols=158 Identities=17% Similarity=0.100 Sum_probs=97.7
Q ss_pred CccceEeecCCCCCchhHHHHhh-cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+.++.|+++++ .+.......+. .+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSN-HLHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCC-cCCcC-CHHHhCCCcCC
Confidence 45888999887 44444444455 788899999988887654433333 6788888888874 44431 11234567788
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHH--hcCCCCCEEEccCCCCChhhHHhcccCCC--C
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSK--L 432 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L 432 (468)
+.|++++|. ++.... ..+..+++|+.|+++++. ++......+. ..+++|+.|++++|.++......+..+++ +
T Consensus 115 ~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CEEECCCCc-ccEECH-HHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 888888775 332211 112357788888887743 4321111110 25677888888888777766666666665 3
Q ss_pred CEEeeCCCCc
Q 012207 433 SSLKLGICSN 442 (468)
Q Consensus 433 ~~L~l~~~~~ 442 (468)
+.|++++|+-
T Consensus 192 ~~l~l~~N~~ 201 (361)
T 2xot_A 192 NGLYLHNNPL 201 (361)
T ss_dssp TTEECCSSCE
T ss_pred ceEEecCCCc
Confidence 7778877743
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=2.8e-11 Score=99.84 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhH-HhcccCCCCCEEeeCCC
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL-KSISRCSKLSSLKLGIC 440 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 440 (468)
+++|+.|++++|. ++. +..+. .+++|+.|++++|.+++... ..+..+++|+.|++++|
T Consensus 92 ~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEE-CCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCEEECcCCc-CCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 3455555555432 222 11222 44555555555555554322 34445555555555555
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=2.8e-09 Score=101.76 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 365 (468)
+++|+.|++++|.++.... .+++|++|+++++ .++. ++. +. ++|+.|++++|.
T Consensus 139 l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE-----LPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSSC
T ss_pred CccccEEeCCCCccCcCCC-----cCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCCC
Confidence 4555666665555443111 2355666666553 2322 111 11 556666665553
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2e-10 Score=92.69 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=76.3
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|+.|++++|.+... ..+....++|+.|+++++ .++.. ..+..+++|+.|++++|. ++... ..+...+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHC
T ss_pred CCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcC
Confidence 3567888888888877642 223323458888888874 44431 223456677777777765 33221 1122356
Q ss_pred CcCCeEEccCCCCCCHHH-HHHHHhcCCCCCEEEccCCCCChhhHH---hcccCCCCCEEeeCCCCccC
Q 012207 380 TSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLK---SISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~ 444 (468)
++|++|+++++. ++... +..+. .+++|+.|++++|.++..... .+..+++|+.|++++| ...
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK 153 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred CCCCEEECCCCc-CCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence 777777777643 33211 12232 566777777777666543322 3456677777777766 443
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=7.6e-11 Score=98.86 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=89.1
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|+++++.+.......+. .+++|++|+++++ .++.. .+..+..+++|++|++++|. ++... ...+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCCc-CCccC-HhHccCCCCC
Confidence 5899999999987754433333 5788999999884 44432 12335567889999998876 43221 1122467888
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888888743 4433222333 67888888888888887766667778888888888884
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=3e-10 Score=108.39 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=127.3
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.+|+.|+++++ .+..... . ..++|+.|+++++.. ... . ..+++|+.|+++++. +.. ++. +.. +|
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~-~---l~~~L~~L~Ls~N~l-~~i--p---~~l~~L~~L~Ls~N~-l~~-ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPD-N---LPPQITVLEITQNAL-ISL--P---ELPASLEYLDACDNR-LST-LPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCSS-CCSCCCS-C---CCTTCSEEECCSSCC-SCC--C---CCCTTCCEEECCSSC-CSC-CCC-CCT--TC
T ss_pred CCccEEEeCCC-CCCccCH-h---HcCCCCEEECcCCCC-ccc--c---cccCCCCEEEccCCC-CCC-cch-hhc--CC
Confidence 38999999985 4443211 1 147899999999863 322 2 457899999999873 333 332 333 99
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
++|++++|.++.... .+++|+.|+++++ .++. ++. .+++|+.|++++|. ++.. .. . .++|+.|
T Consensus 123 ~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~l--p~-l--~~~L~~L 185 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE-----LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTFL--PE-L--PESLEAL 185 (571)
T ss_dssp CEEECCSSCCSCCCC-----CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCC--CC-C--CTTCCEE
T ss_pred CEEECCCCcCCCCCC-----cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCCc--ch-h--hCCCCEE
Confidence 999999998775221 5689999999985 4543 222 56899999999986 4332 11 1 1899999
Q ss_pred EccCCCCCCHHHHHHHH----hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 386 RMECCKLVSWEAFVLIG----QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
+++++. ++. ++.+. ...+.|+.|++++|.++... ..+..+++|+.|++++| .++......+.
T Consensus 186 ~Ls~N~-L~~--lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~ 251 (571)
T 3cvr_A 186 DVSTNL-LES--LPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDN-PLSSRIRESLS 251 (571)
T ss_dssp ECCSSC-CSS--CCCCC--------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSS-SCCHHHHHHHH
T ss_pred ECcCCC-CCc--hhhHHHhhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCC-cCCCcCHHHHH
Confidence 999854 442 11121 12233499999999998754 45667999999999999 88875444433
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=3e-10 Score=94.51 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=16.5
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
++|++|+++++.+.......+..+++|++|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 3455555555544433333344455555555555
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=2e-10 Score=110.23 Aligned_cols=179 Identities=17% Similarity=0.128 Sum_probs=101.6
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCccc-----------ChHhHHHHHhcCCCCcEEe-ccCCCCCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI-----------TDLGIGRIAACCRKLKLLC-LKWCIRVT 190 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 190 (468)
.+++|+.|+++++ .++.. ...++.+++|+.|+++++... ...........+++|+.|+ +..+ .+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cCccceeccCChh-hHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 5788888888876 45443 367888888888888654210 0011122223366777776 3321 111
Q ss_pred hH--------HHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 191 DL--------GVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 191 ~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
+. .+..+ ....|+.|++++|.++. ++.+..+++|+.|+++++ .+... ...+.. +++|+.|+++++
T Consensus 424 ~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~-l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHN-RLRAL-PPALAA-LRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSS-CCCCC-CGGGGG-CTTCCEEECCSS
T ss_pred hhhhhhhhccccccc--CccCceEEEecCCCCCC--CcCccccccCcEeecCcc-ccccc-chhhhc-CCCCCEEECCCC
Confidence 11 11111 22468888888887764 334777888888888884 44422 123444 777888888776
Q ss_pred cccChhhHHHHHhcCCccceEeecCCCCCchhH-HHHhhcCCCCCeeEecCCcCC
Q 012207 263 QNISHVGLSSLIKGADYLQQLILAYSFWVSADL-SKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.... +. .+..+++|+.|+++++ .+.... +..+..+++|+.|++++|.+.
T Consensus 497 ~l~~---lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 497 ALEN---VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCC---CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCC---Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 5322 11 2445566666666665 233222 455556666666666666544
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.86 E-value=1.6e-10 Score=105.04 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=104.3
Q ss_pred CCCCCEEEccCCcccChhhHHHHHh-cCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
.+.++.|+++++. +.... ...+. .+++|+.|+++++ .+.......+..+++|++|++++|.+.......+. .+++
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-DLQA 113 (361)
T ss_dssp CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTT
T ss_pred CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-CCcC
Confidence 3568899999875 33221 11123 6789999999887 45544455678889999999999987654333333 6789
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHH--HhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
|+.|+++++ .++.. ....+..+++|+.|++++|. ++......+ ...+++|+.|+++++ .++......+. .++.
T Consensus 114 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 114 LEVLLLYNN-HIVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KLPA 188 (361)
T ss_dssp CCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-HSCH
T ss_pred CCEEECCCC-cccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hccH
Confidence 999999984 45432 12235567899999999876 443221111 135789999999884 45544434443 5565
Q ss_pred --CCEEEccCCCCCh
Q 012207 408 --LEELDITENEVND 420 (468)
Q Consensus 408 --L~~L~l~~~~~~~ 420 (468)
|+.|++.+|.+..
T Consensus 189 ~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 189 WVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHTTEECCSSCEEC
T ss_pred hhcceEEecCCCccC
Confidence 4889999987653
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=5.9e-10 Score=89.91 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=33.0
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
+|+.|++++|.+.+. ..+. .+++|++|+++++ .++.. ...++..+++|+.|++++|. +++.........+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc--cccc-cCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCC
Confidence 555555555554432 1111 3445555555542 23211 01122345555555555543 22211101122445555
Q ss_pred eEEccCC
Q 012207 384 SLRMECC 390 (468)
Q Consensus 384 ~L~l~~~ 390 (468)
.|+++++
T Consensus 117 ~L~l~~N 123 (176)
T 1a9n_A 117 YLCILRN 123 (176)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 5555553
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=3.1e-10 Score=95.16 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=84.2
Q ss_pred CccceEeecCCCCCchh-HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 278 DYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+.++.|+++++. +... ....+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN-RLENV-QHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CGGGGTTCSSC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC-ccCcc-CHhHhcCCcCC
Confidence 457788888773 3322 223467788888888888887654433333 6788888888874 44322 12234567888
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
++|++++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.+.
T Consensus 108 ~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCCEE
T ss_pred CEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcCCc
Confidence 888888876 332211 112357888888888743 4432222233 6788888888887664
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.80 E-value=1.9e-09 Score=90.33 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=15.5
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
+++.|+++++.+.......+..+++|++|++++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 455555555544433333344445555555554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=4.1e-10 Score=92.85 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHH
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (468)
..+..+++|++|++++|.+.... .+. .+++|+.|+++++ .++. ++.....+++|+.|++++|. ++.. .. .
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~~-~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~ 111 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ-IASL--SG-I 111 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CHH-HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH-H
T ss_pred HHHhcCCCCCEEECCCCCCcccc--ccc-cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc-c
Confidence 35566677777777777655422 222 5577777777764 3331 33344455678888887775 4432 22 3
Q ss_pred hcCCcCCeEEccCCCCCCHH-HHHHHHhcCCCCCEEEccCCCCChhhH----------HhcccCCCCCEEe
Q 012207 377 KTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGL----------KSISRCSKLSSLK 436 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~L~ 436 (468)
..+++|+.|+++++. ++.. .+..+. .+++|+.|++++|.+++... ..+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 356788888887754 4432 233444 77888888888887755422 1255678888776
No 136
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.75 E-value=5.5e-09 Score=88.12 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=29.1
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~-l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS-LTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc-CCCcCEEECCCC
Confidence 55666666666555444444555566666666653 232222111222 455555555544
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.73 E-value=4.6e-09 Score=88.60 Aligned_cols=111 Identities=15% Similarity=0.021 Sum_probs=51.8
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++... . +...+..+++
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~-l~~L~~L~Ls~N~l~-~--lp~~~~~l~~ 136 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDR-LVHLKELFMCCNKLT-E--LPRGIERLTH 136 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCC-S--CCTTGGGCTT
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCc-chhhCeEeccCCccc-c--cCcccccCCC
Confidence 4556666666666554333334455666666666663 333222111222 555666666554421 1 1111233445
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
|+.|+++++ .+.......+..+++|+.|++.+|++.
T Consensus 137 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555544 222222233445566666666666544
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.9e-10 Score=104.72 Aligned_cols=233 Identities=13% Similarity=0.135 Sum_probs=119.6
Q ss_pred hhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
..|++|+.+.+.... ....-..+..+.+|+.+.+... +......++.. +..|+.+.+........ .......
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~-~~~L~~i~~~~~~~~i~----~~~~~~~ 230 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE-CILLENMEFPNSLYYLG----DFALSKT 230 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEEC----TTTTTTC
T ss_pred cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhcc-ccccceeecCCCceEee----hhhcccC
Confidence 366777777765431 1112223445666666666541 22222222333 66666665554321110 1122335
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+|+.+.+... ........+..+..|+.+.+..+. +....+ ..+..++.+..... .+.+. .+..+.+|
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F----~~~~~l~~~~~~~~-~i~~~----~F~~~~~L 299 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLF----YNCSGLKKVIYGSV-IVPEK----TFYGCSSL 299 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTT----TTCTTCCEEEECSS-EECTT----TTTTCTTC
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCCcceeecccc----ccccccceeccCce-eeccc----cccccccc
Confidence 5666665432 111112234456677777766542 111111 14566666665542 22211 13456788
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEe
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (468)
+.+.+... ++..+-. .+.+|.+|+.+++.. .++.-+-.++. +|++|+.+.+..+ ++..+..++..|++|+.+.
T Consensus 300 ~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 300 TEVKLLDS--VKFIGEE-AFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CEEEECTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccc--cceechh-hhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 88877542 2211111 123678888888853 23322222333 7889999998765 6666667788899999999
Q ss_pred eCCCCccCHHHHHHHHhcCcccCee
Q 012207 437 LGICSNITDEGLKHVGSTCSMLKEL 461 (468)
Q Consensus 437 l~~~~~l~~~~~~~~~~~~~~L~~L 461 (468)
+..+ ++. +..-...|++|+.+
T Consensus 373 lp~~--~~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR--LEQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG--GGG--GGGGBCTTCEEEEE
T ss_pred ECCC--CEE--hhheecCCCCCcEE
Confidence 8754 332 22234467887765
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.64 E-value=5.4e-09 Score=85.45 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
++|++|+++++ .++. ++..+..+++|+.|++++|. ++.... ..+..+++|++|+++++. ++......+. .+++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~-~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSN-QSFSNMTQLLTLILSYNR-LRCIPPRTFD-GLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTT-TCTT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCH-hHccCCCCCCEEECCCCc-cCEeCHHHhC-CCCC
Confidence 68999999884 4542 33446678899999998876 432211 122467888888888743 5433222233 6788
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCc
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (468)
|+.|++++|.++......+..+++|+.|++++|+-
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88888888888876655677788888888888843
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.60 E-value=2.4e-09 Score=87.65 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=83.7
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.++++++.+.... .. ..+++++|+++++ .++.......+..+++|++|++++|. ++... ...+..+++|++|
T Consensus 11 ~~l~~s~~~l~~ip-~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCC-SC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCc-cC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEE
Confidence 45555555543211 11 2348999999984 45432111135678899999999876 43221 1223467899999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
+++++. ++......+. .+++|++|++++|.++......+..+++|+.|++++| .++
T Consensus 84 ~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred ECCCCc-CCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 998843 5533222233 6789999999999888876677778889999999998 443
No 141
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.55 E-value=2.8e-06 Score=68.09 Aligned_cols=124 Identities=15% Similarity=0.246 Sum_probs=87.8
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhC---CCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH---KELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 391 (468)
+.+..+...-+.|++|+|++++.+.+.+...+...+ +.|+.|++++|. +++.+...++ ..-+.|++|+|+. +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 445555556678999999875578888766665544 688999998876 7777755444 3457889999987 5
Q ss_pred CCCHHHHHHHHhcC---CCCCEEEccCC---CCChhhHHhcc----cCCCCCEEeeCCCCccC
Q 012207 392 LVSWEAFVLIGQQC---QYLEELDITEN---EVNDEGLKSIS----RCSKLSSLKLGICSNIT 444 (468)
Q Consensus 392 ~~~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~l~----~~~~L~~L~l~~~~~l~ 444 (468)
.+++.+...+++.+ +.|++|+++++ .+++.+...++ .-++|+.|+++.+ .+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g 170 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SME 170 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHH
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-Ccc
Confidence 58888887776543 46888888764 56776554443 5678888888876 444
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.50 E-value=6.1e-09 Score=85.18 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=80.7
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.++++++. +. .++..+ .++|++|+++++.+...........+++|++|+++++ .++.. .+..+..+++|+.|+
T Consensus 11 ~~l~~s~~~-l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG-LK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC-CS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC-cC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCc-CHhHcCCcccCCEEE
Confidence 567776652 21 222211 2388999999988765443322236789999999884 44432 133355678999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+++|. ++.... ..+..+++|++|+++++. ++......+. .+++|+.|++++|.+..
T Consensus 85 Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 LGENK-IKEISN-KMFLGLHQLKTLNLYDNQ-ISCVMPGSFE-HLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSCC-CCEECS-SSSTTCTTCCEEECCSSC-CCEECTTSST-TCTTCCEEECTTCCBCC
T ss_pred CCCCc-CCccCH-HHhcCCCCCCEEECCCCc-CCeeCHHHhh-cCCCCCEEEeCCCCccC
Confidence 99876 432221 112357899999998843 5433222233 67889999999987663
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.49 E-value=1.5e-08 Score=81.72 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
.+.+++.++.+..... . ..++|++|+++++ .++.. ....+..+++|++|++++|. ++... ......+++|+.
T Consensus 9 ~~~l~~~~~~l~~~p~-~---~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-G---IPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT-T---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC-C---CCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCc-ceEeC-hhHccCCCccCE
Confidence 3455555555443211 1 2468999999984 44421 12234567899999999876 44221 112246889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 81 L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 81 LYLHENK-LQSLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred EECCCCC-ccccCHHHh-hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 9998854 543222222 36789999999999888766555677899999999999 544
No 144
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.48 E-value=2.5e-06 Score=68.37 Aligned_cols=126 Identities=11% Similarity=0.208 Sum_probs=87.2
Q ss_pred hhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHHh---CCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCC
Q 012207 293 ADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCR 365 (468)
Q Consensus 293 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~ 365 (468)
..+...+.+-+.|++|+++++ .+.+.+...++.. -..|++|+|++| .+.+.+...+ +..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345555667788888888885 7888877776653 457888888884 6777764443 3445788888888876
Q ss_pred CCCHHHHHHHHhc---CCcCCeEEccCCC--CCCHHHHHHHH---hcCCCCCEEEccCCCCCh
Q 012207 366 KITYASINSITKT---CTSLTSLRMECCK--LVSWEAFVLIG---QQCQYLEELDITENEVND 420 (468)
Q Consensus 366 ~~~~~~~~~~~~~---~~~L~~L~l~~~~--~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 420 (468)
+++.+...++.. -..|++|+++++. .+++.+...+. +.-+.|++|+++.+.+..
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 888887776654 3578888887642 46766544333 355778888887765443
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.42 E-value=2.5e-08 Score=98.86 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=77.4
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++|+.|+|+++. +.. ++.-+..+++|++|+|++|. ++ .+...+..+++|+.|+|+++. ++ .+......+
T Consensus 222 ~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGG
T ss_pred cCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCC
Confidence 67889999998853 331 23223478899999999886 44 222333578999999998854 54 222222378
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHH
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (468)
++|+.|+|++|.++... ..+..+++|+.|+|++| .++..
T Consensus 293 ~~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCCC-SSTTSCTTCCCEECTTS-CCCSH
T ss_pred CCCCEEECCCCCCCccC-hhhhcCCCccEEeCCCC-ccCCC
Confidence 89999999999887543 44778899999999999 77753
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.42 E-value=4.3e-08 Score=80.04 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=64.4
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|++|+++++.+.... ..+ ..+++|+.|+++++ .++.. ....+..+++|++|++++|. ++..... .+..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~-~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KEL-SNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPR-TFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGG-GGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTC
T ss_pred CCCCEEECCCCcCchhH-HHh-hcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHH-HhCCCCCC
Confidence 47888888888766322 222 26678888888774 44421 11224566788888888765 3322211 12357788
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+.|+++++. ++......+ ..+++|+.|++++|.+.
T Consensus 105 ~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGND-ISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSC-CCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred CEEECCCCC-CCeeChhhh-hcCccccEEEeCCCCee
Confidence 888887743 442221122 26778888888887553
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.34 E-value=3.1e-08 Score=98.22 Aligned_cols=138 Identities=17% Similarity=0.092 Sum_probs=91.6
Q ss_pred HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHH
Q 012207 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
....+..++.|+.|+|++|.+... ...+. .+++|++|+|+++ .++ .++..+..+++|+.|+|++|. ++ .+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNI-SANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCC-CGGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCS
T ss_pred ChhhhccCCCCcEEECCCCCCCCC-Chhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccCh
Confidence 345577889999999999987632 22233 6899999999985 555 245556788999999999987 44 2233
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeCCCCccC
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGICSNIT 444 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~ 444 (468)
.+..+++|++|+|++|. ++. +......+++|+.|+|++|.++......+.... .+..+++.+| .++
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~ 354 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE 354 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred hhcCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc
Confidence 34578999999999864 542 221133789999999999999987666654321 1123556666 443
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=6.8e-08 Score=88.45 Aligned_cols=268 Identities=13% Similarity=0.162 Sum_probs=121.9
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+..++.+.+... +......++..+ +|+.+.+... +...+-.++.. + +|+.+.+.. .+...+.. .+..|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~-~L~~i~lp~--~l~~I~~~-aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-S-TVQEIVFPS--TLEQLKED-IFYYCY 180 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-C-CCCEEECCT--TCCEECSS-TTTTCT
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-C-CceEEEeCC--CccEehHH-HhhCcc
Confidence 3566666666542 233222344443 5666666542 33222222222 2 466666654 12211111 123667
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChhhHHHHHhcCCccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~ 281 (468)
+|+.+++..+.+..-....+. +.+|+.+.+.. .+......++.. |++|+.+.+... ..+.... +.. .+|+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~-~~~L~~l~l~~~l~~I~~~a----F~~-~~L~ 251 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLK-TSQLKTIEIPENVSTIGQEA----FRE-SGIT 251 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTT-CTTCCCEECCTTCCEECTTT----TTT-CCCS
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhC-CCCCCEEecCCCccCccccc----ccc-CCcc
Confidence 777777766544332222232 45666666653 233333233333 666666666542 1111111 111 3455
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
.+.+... +......++..|++|+.+.+.++..... .++ .+. ...+.+|++|+.+.+
T Consensus 252 ~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~----------~~~--------~I~----~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 252 TVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD----------PEA--------MIH----PYCLEGCPKLARFEI 307 (401)
T ss_dssp EEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC----------TTC--------EEC----TTTTTTCTTCCEECC
T ss_pred EEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC----------ccc--------EEC----HHHhhCCccCCeEEe
Confidence 5555321 2212222334444555554444322100 000 011 111345666777766
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 440 (468)
... ++..+-. .+.+|++|+.+.+.. .++.-+-..+. +| +|+.+.+.++.+.......+..++ +++.|.+..+
T Consensus 308 ~~~--i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 308 PES--IRILGQG-LLGGNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT--CCEECTT-TTTTCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc--eEEEhhh-hhcCCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 531 2211111 123567777777743 23322222233 66 788888888766554434455554 6778887765
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.31 E-value=1e-08 Score=93.85 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=93.9
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 355 (468)
.+|+.+.+... +......++..+++|+.+.+..+- +....+. . .+|+.+.+.. .+...+ ...+.+|++
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~--~i~~I~-~~aF~~c~~ 272 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFR----E-SGITTVKLPN--GVTNIA-SRAFYYCPE 272 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTT----T-CCCSEEEEET--TCCEEC-TTTTTTCTT
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccc----c-CCccEEEeCC--CccEEC-hhHhhCCCC
Confidence 45555555432 222223345566666666665431 2222221 1 5677777743 222111 122456788
Q ss_pred CCeEecCCCCC-------CCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc
Q 012207 356 LRKLDITCCRK-------ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (468)
Q Consensus 356 L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (468)
|+.+.+.++.. +.. ..+..|++|+.+.+.. .++.-+-..+. .|++|+.+.+.++ ++..+...+..
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIPE--SIRILGQGLLG-GNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTT-TCCSCCEEEECTT-CCEECTTSSSS
T ss_pred CCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeCC--ceEEEhhhhhc-CCCCccEEEECcc-ccEEcHHhCCC
Confidence 88888765432 221 1224789999999974 24433333333 8899999999654 66666667788
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHhcCc-ccCeeecCC
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYR 465 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~ 465 (468)
| +|+.+.+.++ .+....-.. ...++ +++.|.+..
T Consensus 345 ~-~L~~l~l~~n-~~~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp S-CCCEEEECCS-SCCBCCCSS-CCCSCTTCCEEEECG
T ss_pred C-CCCEEEEcCC-CCccccccc-ccCCCCCccEEEeCH
Confidence 8 9999999988 544321112 22453 677777654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=2.5e-08 Score=91.77 Aligned_cols=233 Identities=14% Similarity=0.148 Sum_probs=133.7
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCC
Q 012207 174 CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKS 253 (468)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (468)
.|++|+.+.+... +...+ ...+..|++|+.+.+..+ +....-..+..+..|+.+.+......... ....+.+
T Consensus 160 ~c~~L~~i~l~~~--~~~I~-~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~----~~~~~~~ 231 (394)
T 4fs7_A 160 TCESLEYVSLPDS--METLH-NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGD----FALSKTG 231 (394)
T ss_dssp TCTTCCEEECCTT--CCEEC-TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCC
T ss_pred ccCCCcEEecCCc--cceec-cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeeh----hhcccCC
Confidence 3889999988653 22111 112347889999988654 22222234556778887777652211111 1112578
Q ss_pred CCEEEccCCcc-cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCe
Q 012207 254 LKALNLSKCQN-ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332 (468)
Q Consensus 254 L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 332 (468)
|+.+.+..... +.. ..+..+..++.+.+... ........+..++.++.+......+.+..+ ..+.+|+.
T Consensus 232 l~~i~ip~~~~~i~~----~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F----~~~~~L~~ 301 (394)
T 4fs7_A 232 VKNIIIPDSFTELGK----SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTF----YGCSSLTE 301 (394)
T ss_dssp CCEEEECTTCCEECS----STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTT----TTCTTCCE
T ss_pred CceEEECCCceeccc----ccccccccceeEEcCCC--cceeeccccccccccceeccCceeeccccc----cccccccc
Confidence 88888865321 111 12455778888887653 222222345577788888777665544332 26788999
Q ss_pred EecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 333 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
+.+.. .+...+ ...+.+|.+|++++|... ++..+-. .+.+|.+|+.+.+.. .++.-+-.++. +|++|+.++
T Consensus 302 i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~--v~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~ 372 (394)
T 4fs7_A 302 VKLLD--SVKFIG-EEAFESCTSLVSIDLPYL--VEEIGKR-SFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVE 372 (394)
T ss_dssp EEECT--TCCEEC-TTTTTTCTTCCEECCCTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEE
T ss_pred ccccc--ccceec-hhhhcCCCCCCEEEeCCc--ccEEhHH-hccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEE
Confidence 98864 222211 122557889999998642 2222111 124689999999964 24332223333 899999999
Q ss_pred ccCCCCChhhHHhcccCCCCCEE
Q 012207 413 ITENEVNDEGLKSISRCSKLSSL 435 (468)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L 435 (468)
+..+ +.... ..+..|++|+.+
T Consensus 373 lp~~-~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GGGGG-GGBCTTCEEEEE
T ss_pred ECCC-CEEhh-heecCCCCCcEE
Confidence 9764 22222 356678888765
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.27 E-value=7.7e-07 Score=71.57 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++...... ...+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDK-LTKLTILYLHENKLQSLP--NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccC-CCccCEEECCCCCccccC--HHHhhCCcccC
Confidence 45555555555554333333445555666665553 233221111222 455555555554311100 01122334444
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.|+++++ .+.......+..+++|++|++++|.+.
T Consensus 104 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 4444444 222222222344555555555555543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.16 E-value=4.2e-07 Score=72.46 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|+.|++++|. ++... ...+..+++|++|+++++ .++......+ ..+++|++|++++|.++......+..+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCC-CcCccChhhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 689999999876 43221 122346899999999985 4553222222 3789999999999999887666677899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++++| .++
T Consensus 106 ~L~L~~N-~~~ 115 (170)
T 3g39_A 106 HIWLLNN-PWD 115 (170)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-CCC
Confidence 9999999 553
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.14 E-value=5.1e-07 Score=72.23 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|+.|++++|. ++... ...+..+++|+.|+++++ .++..... ....+++|+.|++++|.++......+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 689999999876 43221 122346899999999985 45532211 223789999999999998876655577899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++++| .+.
T Consensus 109 ~L~L~~N-~~~ 118 (174)
T 2r9u_A 109 HIYLYNN-PWD 118 (174)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-Ccc
Confidence 9999999 554
No 154
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.09 E-value=1.9e-06 Score=73.47 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhh-HHhhhhhhHHHHHHhh
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARK-SFSLTCRNFYSIESRH 51 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~-~~~~v~~~w~~~~~~~ 51 (468)
..+..||+|++..||+ +|| +++++ ++++|||+|+.++.+.
T Consensus 49 ~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 5789999999999999 998 99999 9999999999998654
No 155
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.98 E-value=2.6e-06 Score=71.65 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=36.2
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.++.||+||+.+||+ ||+ ++|+.+++.|||+|+.++.+.
T Consensus 4 ~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccc
Confidence 588999999999999 997 999999999999999987654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=2.8e-05 Score=65.99 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=55.3
Q ss_pred hcCCcCCeEEccCCCCCCH-HHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCCCCEEeeCCCCccCH------HHH
Q 012207 377 KTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITD------EGL 448 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~------~~~ 448 (468)
..+++|+.|+++++. ++. .++......+++|+.|+|++|.+++. .+..+..+ +|++|++++| .++. ...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC-cCccccCcchhHH
Confidence 457777777777743 433 23333444788999999999988775 22333333 8999999999 5653 233
Q ss_pred HHHHhcCcccCeee
Q 012207 449 KHVGSTCSMLKELD 462 (468)
Q Consensus 449 ~~~~~~~~~L~~L~ 462 (468)
..+...+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 45667899999886
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=3.8e-07 Score=83.85 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=162.9
Q ss_pred cC-CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCC--cccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh
Q 012207 123 NC-RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC--KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVAL 199 (468)
Q Consensus 123 ~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (468)
.| ..|+++.+... ++.....++..|.+|+.+.+... ..+...+-.++.. |.+|+.+.+... ++..+.. .+.
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~-aF~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF-CSELTDIPILDS--VTEIDSE-AFH 134 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT-CTTCCBCGGGTT--CSEECTT-TTT
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh-cccceeeccCCc--cceehhh-hhh
Confidence 55 46999999754 44444567888999999988653 2233333333333 788888777542 2222111 224
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc-cChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN-ISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~ 278 (468)
.|.+|+.+.+... +....-..+..+..|+.+.+.. .+......++. ..+|+.+.+..... +.. ..+..+.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~~~~~i~~----~af~~c~ 205 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPAKVTRIGT----NAFSECF 205 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECTTCCEECT----TTTTTCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECCccccccc----chhhhcc
Confidence 7889999988653 2212223455678888888765 23322222232 46788888865321 111 1134456
Q ss_pred ccceEeecCCCCCc--hhHH----------HHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHH
Q 012207 279 YLQQLILAYSFWVS--ADLS----------KCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (468)
Q Consensus 279 ~L~~L~l~~~~~~~--~~~~----------~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (468)
.++........... .... ........+..+.+...- +.+..+ ..+..|+.+.+... +...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF----~~c~~L~~i~lp~~--~~~I 279 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAF----DSCAYLASVKMPDS--VVSI 279 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTT----TTCSSCCEEECCTT--CCEE
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccccee----eecccccEEecccc--ccee
Confidence 66665543321100 0000 000111233334333210 111111 25678888888642 1111
Q ss_pred HHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHH
Q 012207 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 345 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (468)
+ ...+..|+.|+.+.+... ++..+- ..+.+|.+|+.+.+.. .++.-+-.++. .|.+|+.+.+..+ ++..+..
T Consensus 280 ~-~~aF~~c~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 280 G-TGAFMNCPALQDIEFSSR--ITELPE-SVFAGCISLKSIDIPE--GITQILDDAFA-GCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp C-TTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCEEEECTT-CCBCCGG
T ss_pred c-CcccccccccccccCCCc--ccccCc-eeecCCCCcCEEEeCC--cccEehHhHhh-CCCCCCEEEECcc-cCEEhHh
Confidence 1 112446788888888532 221111 1224688999999853 23322222333 8899999999654 6666667
Q ss_pred hcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
++..|++|+.+.+.++ ... ... ...+.+|+.+.+..+
T Consensus 352 aF~~C~~L~~i~~~~~-~~~---~~~-~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGS-RSQ---WNA-ISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGTTCTTCCEEEESSC-HHH---HHT-CBCCCCC--------
T ss_pred HhhCCCCCCEEEECCc-eee---hhh-hhccCCCCEEEeCCC
Confidence 7888999999999876 322 222 246788888887654
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.88 E-value=3e-06 Score=67.48 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=65.6
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
.+.++++++.++... .. ..++|++|+++++ .++.. .+..+..+++|+.|++++|. ++... ...+..+++|++
T Consensus 11 ~~~l~~s~n~l~~ip-~~---~~~~l~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TG---IPTTTQVLYLYDN-QITKL-EPGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCC-SC---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccC-cc---CCCCCcEEEcCCC-cCCcc-ChhhhcCcccCCEEECCCCC-cCccC-hhhccCCCCCCE
Confidence 455666665544311 11 2378999999884 44432 12335577899999999876 44221 122346889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
|+++++ .++......+ ..+++|+.|++++|.++.
T Consensus 83 L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAF-DNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBCT
T ss_pred EECCCC-ccCEeCHHHh-cCCCCCCEEEeCCCCCCC
Confidence 999884 3543222223 378899999999987754
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.86 E-value=3.4e-06 Score=67.41 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=65.5
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.++++++.+.... .. ..++|++|+++++ .++.. .+..+..+++|+.|++++|. ++... ...+..+++|+.|
T Consensus 15 ~~l~~~~n~l~~iP-~~---~~~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AG---IPTDKQRLWLNNN-QITKL-EPGVFDHLVNLQQLYFNSNK-LTAIP-TGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCC-SC---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccC-CC---cCCCCcEEEeCCC-Ccccc-CHHHhcCCcCCCEEECCCCC-CCccC-hhHhCCcchhhEE
Confidence 45566665543211 11 2378999999984 44431 13345678899999999886 44321 1122468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+++++ .++......+ ..+++|+.|++++|.+..
T Consensus 87 ~L~~N-~l~~l~~~~~-~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAF-DNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSS-CCCCCCTTTT-TTCTTCSEEECCSSCBCT
T ss_pred ECCCC-ccceeCHHHh-ccccCCCEEEeCCCCccc
Confidence 99884 3543221122 378899999999987764
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=4.1e-06 Score=76.94 Aligned_cols=309 Identities=15% Similarity=0.197 Sum_probs=166.1
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCC--CccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..|+++.+... ++..+-.++. .|++|+.+.+..+ ..+......++..+.+|+.+.+... +...+-.++. .|.
T Consensus 64 ~~L~sI~iP~s--vt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~-~c~ 137 (394)
T 4gt6_A 64 YVLTSVQIPDT--VTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH-HCE 137 (394)
T ss_dssp SCCCEEEECTT--CCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT-TCT
T ss_pred CcCEEEEECCC--eeEEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh-hhc
Confidence 45899988542 3333333444 8999999998643 1244444456778899998887642 3332222222 389
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|+.+.+... +...+ ......|..|+.+.+... +....-..+ ....|+.+.+.. .+...+..++.. +..++.
T Consensus 138 ~L~~i~lp~~--~~~I~-~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~--~~~~i~~~af~~-c~~l~~ 209 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVA-DGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPA--KVTRIGTNAFSE-CFALST 209 (394)
T ss_dssp TCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECT--TCCEECTTTTTT-CTTCCE
T ss_pred ccccccccce--eeeec-ccceecccccccccccce-eeEeccccc-cccceeEEEECC--cccccccchhhh-ccccce
Confidence 9999999652 22211 112347899999998765 111111222 235788888865 222222233333 778887
Q ss_pred EEccCCcccChhhHH--H-------H--HhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHH
Q 012207 257 LNLSKCQNISHVGLS--S-------L--IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAI 323 (468)
Q Consensus 257 L~l~~~~~~~~~~~~--~-------~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l 323 (468)
............... . + ......+..+.+.. .+......++..+..|+.+.+.... +....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF--- 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGAF--- 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTTT---
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCccc---
Confidence 766543211100000 0 0 00011222333221 1111222346678889999887643 222222
Q ss_pred HHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC-CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHH
Q 012207 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC-RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (468)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (468)
..+++|+.+.+.. .+...+ ...+.+|.+|+++.|... ..+.+. .+.+|.+|+.+.+.. .++.-+-.++.
T Consensus 285 -~~c~~L~~i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~--sv~~I~~~aF~ 354 (394)
T 4gt6_A 285 -MNCPALQDIEFSS--RITELP-ESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPS--SVTKIPESAFS 354 (394)
T ss_dssp -TTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred -ccccccccccCCC--cccccC-ceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence 2678999999864 222211 122557899999999643 222222 224789999999953 23322223333
Q ss_pred hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+|++|+.+++.++.. ....+..+.+|+.+.+..+
T Consensus 355 -~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 -NCTALNNIEYSGSRS---QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -TCTTCCEEEESSCHH---HHHTCBCCCCC--------
T ss_pred -CCCCCCEEEECCcee---ehhhhhccCCCCEEEeCCC
Confidence 899999999988642 2345667889999888755
No 161
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.68 E-value=1.3e-05 Score=75.39 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=38.9
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 6 ~~~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
.-..+++..||+||+.+||+ ||+ ++++.++++|||+|++++..
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 34467899999999999999 997 99999999999999999876
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.65 E-value=1.3e-05 Score=72.24 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=65.6
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCC-CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITC-CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
.++.++.+.++. ++. +..+++|+.|+|++ |. ++.... ..+..+++|+.|+|+++ .++......+. .+++|+.
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~-l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQH-LQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSS-CCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCE
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCC-CCCcCh-hHhccccCCCEEECCCC-ccceeCHHHhc-CCcCCCE
Confidence 445555324443 444 55677899999986 54 443221 12346888999999884 45543222333 7888999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|+|++|.++......+..++ |+.|++.+| .+.
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 99999888765544444444 889999888 554
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=0.00035 Score=59.30 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=33.7
Q ss_pred hcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
..+++|+.|+++++....-.++...+..+++|+.|+++++....-.....+..+ +|++|.+.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 447778888887776433223333444556666666665532221112222222 5555555555543
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.39 E-value=2.7e-05 Score=70.11 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred eeEecCC-cCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 307 SIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 307 ~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
.++..+. .++. .+. +. .+++|++|+|++++.+... ....+..+++|+.|+|++|. ++... ...+..+++|+.|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~-~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LP-GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT-TTT-SC-SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCc-cCC-CC-CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCCEE
Confidence 4555655 4543 222 32 5677889999853455432 11235567889999998875 44322 1223468889999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+|+++ .++.... .....++ |+.|++.+|.+.
T Consensus 86 ~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFN-ALESLSW-KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSS-CCSCCCS-TTTCSCC-CCEEECCSSCCC
T ss_pred eCCCC-ccceeCH-HHcccCC-ceEEEeeCCCcc
Confidence 99884 3442211 1221333 889999888765
No 165
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.39 E-value=5.9e-05 Score=70.27 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=38.7
Q ss_pred cCCCCcccCcHH----HHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 7 KNSNPFDFLSEE----IIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 7 ~~~~~~~~LP~e----il~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
-..+++..||+| |+.+||+ ||+ .+++.++++|||+|++++...
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 346889999999 9999999 997 999999999999999988653
No 166
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.36 E-value=0.00011 Score=68.64 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=38.1
Q ss_pred cCCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 7 ~~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
...+++..||+|++.+||+ ||+ +.|+.+++.|||+|+.++..
T Consensus 14 ~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred ccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 3467899999999999999 997 99999999999999998754
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.69 E-value=2.2e-05 Score=71.62 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=68.2
Q ss_pred hhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHH
Q 012207 299 LHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (468)
+..+.+|+.+.+...- +....+ ..+..|+.+.+... ++..+ ...+..+.+|+.+.+... +...+. ...
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~--i~~i~~-~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK--VKTVPY-LLC 282 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC--CSEECT-TTT
T ss_pred cccccccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc--ceeccc-ccc
Confidence 3455677777765431 211111 15677888777542 22111 112345677888777532 221111 112
Q ss_pred hcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
..|.+|+.+.+.+. .++.-+-..+. +|++|+.+.+..+ ++..+..++..|++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEPRVFM-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-ccceehhhhhc-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 35788888887642 23222222222 7788888888643 5555556677788888887753
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.19 E-value=0.0082 Score=54.48 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=81.6
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+..+..+.+.... ......++..+.+|+.+.+... +...+..++. .|..|+.+.+... ++..+- .....|.
T Consensus 192 ~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~-~~~~L~~i~lp~~--v~~I~~-~aF~~~~ 263 (379)
T 4h09_A 192 AAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY-GMKALDEIAIPKN--VTSIGS-FLLQNCT 263 (379)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT--CCEECTTTTT-TCSSCCEEEECTT--CCEECT-TTTTTCT
T ss_pred ccccccccccccce--eEEeecccccccccceeeeccc--eeEEcccccc-CCccceEEEcCCC--ccEeCc-cccceee
Confidence 34556666655432 1112234455677887777542 2222222222 2778888887642 222211 1223678
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChhhHHHHHhcCCccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~ 281 (468)
+|+.+.+... +.......+..+.+|+.+.+.+ ..+...+-.++.. |.+|+.+.+... ..+.+. .+..|.+|+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~-c~~L~~i~lp~~l~~I~~~----aF~~C~~L~ 336 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD-CVKLSSVTLPTALKTIQVY----AFKNCKALS 336 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT-CTTCCEEECCTTCCEECTT----TTTTCTTCC
T ss_pred hhcccccccc-ceeccccccccccccccccccc-cccceehhhhhcC-CCCCCEEEcCccccEEHHH----HhhCCCCCC
Confidence 8888888643 3222334456778888888865 2333333233444 888888888643 223322 255678888
Q ss_pred eEeecC
Q 012207 282 QLILAY 287 (468)
Q Consensus 282 ~L~l~~ 287 (468)
++.+..
T Consensus 337 ~i~ip~ 342 (379)
T 4h09_A 337 TISYPK 342 (379)
T ss_dssp CCCCCT
T ss_pred EEEECC
Confidence 887754
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.30 E-value=0.13 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=25.2
Q ss_pred CCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
+|+.|+|++|.++......+..+++|+.|+|.+|+-.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777777776665555666777777777777443
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.22 E-value=2 Score=31.56 Aligned_cols=37 Identities=16% Similarity=-0.078 Sum_probs=22.7
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHG 238 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 238 (468)
++|+.|+|++|.++.-....+..+++|+.|++.++..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3577777777766554444555566666666666443
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.83 E-value=25 Score=24.17 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=6.1
Q ss_pred cCCCCCEEEccC
Q 012207 404 QCQYLEELDITE 415 (468)
Q Consensus 404 ~~~~L~~L~l~~ 415 (468)
.|.+|+.+.+.+
T Consensus 41 ~C~~L~~i~~~~ 52 (100)
T 2lz0_A 41 GCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECC
T ss_pred ccCCccEEEEcC
Confidence 455555555544
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=25.89 E-value=34 Score=19.28 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.1
Q ss_pred CcccCcHHHHHHHHh
Q 012207 11 PFDFLSEEIIFNILD 25 (468)
Q Consensus 11 ~~~~LP~eil~~I~~ 25 (468)
-|..||.||-.+|++
T Consensus 20 VF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 20 VFKQLPADIQEEILS 34 (48)
T ss_dssp GTTTSCHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHh
Confidence 577888888888887
Done!