BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012208
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQX|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
Length = 267
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 333 WDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
+DW++ P V G+ G L + + DV +T + II L+ G + GE
Sbjct: 195 YDWLIMTPGV-----GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
Query: 393 RWSTAGW 399
R+ AGW
Sbjct: 250 RYRKAGW 256
>pdb|3GDR|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|B Chain B, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|C Chain C, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|D Chain D, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDT|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|B Chain B, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|C Chain C, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|D Chain D, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
Length = 267
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 333 WDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
+DW++ P V G+ G L + + DV +T + II L+ G + GE
Sbjct: 195 YDWLIMTPGV-----GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
Query: 393 RWSTAGW 399
R+ AGW
Sbjct: 250 RYRKAGW 256
>pdb|3GDK|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|B Chain B, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|C Chain C, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|D Chain D, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDL|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae Complexed
With 6-Azauridine 5'-Monophosphate
pdb|3GDL|B Chain B, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae Complexed
With 6-Azauridine 5'-Monophosphate
Length = 267
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 333 WDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
+DW++ P V G+ G L + + DV +T + II L+ G + GE
Sbjct: 195 YDWLIMTPGV-----GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
Query: 393 RWSTAGW 399
R+ AGW
Sbjct: 250 RYRKAGW 256
>pdb|3GDM|A Chain A, Crystal Structure Of The K93r Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDM|B Chain B, Crystal Structure Of The K93r Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
Length = 267
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 333 WDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
+DW++ P V G+ G L + + DV +T + II L+ G + GE
Sbjct: 195 YDWLIMTPGV-----GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
Query: 393 RWSTAGW 399
R+ AGW
Sbjct: 250 RYRKAGW 256
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 59 KTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESV 105
K N H+I+ W ++ KGND+ N+QTT E+V
Sbjct: 46 KAAKLANYQHLIEEAIDWALQIKGNDK-----------NSQTTLENV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,307,081
Number of Sequences: 62578
Number of extensions: 459655
Number of successful extensions: 1060
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 8
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)