Query 012208
Match_columns 468
No_of_seqs 232 out of 1998
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 4.6E-31 9.9E-36 265.8 33.3 281 123-418 11-332 (358)
2 PRK11689 aromatic amino acid e 100.0 2.2E-30 4.7E-35 256.2 31.0 270 125-417 4-290 (295)
3 PRK11272 putative DMT superfam 100.0 4.5E-30 9.7E-35 253.6 33.0 273 126-417 9-288 (292)
4 PRK11453 O-acetylserine/cystei 100.0 1.1E-29 2.4E-34 251.7 34.4 278 127-417 6-290 (299)
5 PRK15430 putative chlorampheni 100.0 1.7E-29 3.8E-34 249.8 30.2 274 121-416 4-287 (296)
6 PRK10532 threonine and homoser 100.0 6.2E-29 1.3E-33 245.5 32.9 270 123-418 10-285 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 8.6E-28 1.9E-32 233.0 29.3 254 137-409 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 2.6E-26 5.6E-31 227.9 27.8 276 138-419 15-298 (302)
9 KOG4510 Permease of the drug/m 100.0 4.6E-29 1E-33 229.9 5.4 275 122-418 35-329 (346)
10 PTZ00343 triose or hexose phos 99.9 1.3E-24 2.9E-29 219.5 34.1 282 124-415 48-349 (350)
11 TIGR00688 rarD rarD protein. T 99.9 1.7E-24 3.8E-29 209.7 28.6 241 125-389 2-255 (256)
12 TIGR03340 phn_DUF6 phosphonate 99.9 2.3E-24 5E-29 211.7 27.0 267 127-411 3-280 (281)
13 PF06027 DUF914: Eukaryotic pr 99.9 2.4E-22 5.2E-27 198.8 29.2 281 122-419 10-310 (334)
14 COG0697 RhaT Permeases of the 99.9 1E-21 2.2E-26 192.5 33.6 271 123-415 5-288 (292)
15 COG5006 rhtA Threonine/homoser 99.9 2.1E-21 4.4E-26 178.6 27.8 268 126-418 13-286 (292)
16 COG2962 RarD Predicted permeas 99.9 1.7E-19 3.6E-24 170.5 28.7 272 123-417 5-286 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 1.3E-19 2.8E-24 178.6 26.9 260 126-414 2-288 (290)
18 KOG2765 Predicted membrane pro 99.8 2.6E-18 5.6E-23 166.4 18.5 221 186-418 163-394 (416)
19 PF08449 UAA: UAA transporter 99.8 1.2E-15 2.6E-20 151.5 29.2 255 152-419 31-302 (303)
20 KOG1441 Glucose-6-phosphate/ph 99.6 8.7E-16 1.9E-20 150.4 12.3 270 139-420 31-313 (316)
21 KOG2766 Predicted membrane pro 99.6 1E-15 2.3E-20 141.0 1.9 268 124-413 17-298 (336)
22 COG2510 Predicted membrane pro 99.5 6.3E-14 1.4E-18 116.3 12.0 129 125-253 3-139 (140)
23 KOG1580 UDP-galactose transpor 99.5 1.1E-12 2.3E-17 119.8 14.4 254 153-419 53-318 (337)
24 COG2510 Predicted membrane pro 99.4 1.7E-12 3.6E-17 108.0 11.0 135 261-413 4-138 (140)
25 KOG1444 Nucleotide-sugar trans 99.4 4.9E-11 1.1E-15 114.8 22.7 281 127-418 14-304 (314)
26 KOG1443 Predicted integral mem 99.4 7.9E-11 1.7E-15 111.9 21.3 254 153-412 45-313 (349)
27 KOG1581 UDP-galactose transpor 99.4 7.8E-11 1.7E-15 112.1 20.2 254 152-418 50-317 (327)
28 KOG2234 Predicted UDP-galactos 99.3 4.7E-09 1E-13 102.7 30.7 276 125-416 15-324 (345)
29 PF04142 Nuc_sug_transp: Nucle 99.3 2.4E-10 5.1E-15 109.6 21.5 208 183-405 18-244 (244)
30 PF00892 EamA: EamA-like trans 99.3 1.5E-11 3.3E-16 104.8 11.1 125 270-413 1-125 (126)
31 KOG3912 Predicted integral mem 99.3 5.4E-10 1.2E-14 104.9 21.5 225 186-413 90-333 (372)
32 PF00892 EamA: EamA-like trans 99.3 4.8E-11 1E-15 101.7 11.0 117 135-252 1-125 (126)
33 KOG4314 Predicted carbohydrate 99.1 6.3E-10 1.4E-14 99.3 10.0 214 189-417 60-279 (290)
34 PF06800 Sugar_transport: Suga 99.1 4.2E-08 9.2E-13 94.1 23.1 235 152-411 11-268 (269)
35 PF13536 EmrE: Multidrug resis 99.1 2.2E-09 4.8E-14 90.6 12.2 98 158-256 2-109 (113)
36 COG5070 VRG4 Nucleotide-sugar 99.0 1.5E-08 3.2E-13 92.3 17.0 266 140-418 21-300 (309)
37 KOG1442 GDP-fucose transporter 99.0 1.4E-10 3E-15 108.6 3.7 256 152-419 60-332 (347)
38 PF03151 TPT: Triose-phosphate 99.0 6.7E-09 1.5E-13 92.2 14.2 148 261-414 1-153 (153)
39 TIGR03340 phn_DUF6 phosphonate 99.0 1.3E-08 2.8E-13 100.0 17.0 134 262-415 3-136 (281)
40 TIGR00950 2A78 Carboxylate/Ami 99.0 2.3E-08 4.9E-13 96.8 16.1 127 123-249 126-260 (260)
41 PRK13499 rhamnose-proton sympo 98.9 1.4E-06 3.1E-11 86.9 28.0 283 122-415 4-342 (345)
42 TIGR00688 rarD rarD protein. T 98.9 4.1E-08 8.8E-13 95.1 15.7 140 260-414 2-142 (256)
43 PRK15430 putative chlorampheni 98.9 4.1E-08 8.9E-13 97.2 14.9 140 258-414 6-145 (296)
44 PF05653 Mg_trans_NIPA: Magnes 98.8 8E-08 1.7E-12 94.9 13.3 262 122-416 4-294 (300)
45 PRK02971 4-amino-4-deoxy-L-ara 98.8 3.1E-07 6.7E-12 79.1 15.2 121 260-416 2-124 (129)
46 PLN00411 nodulin MtN21 family 98.8 2.1E-07 4.6E-12 94.3 16.6 139 261-416 14-158 (358)
47 PRK10532 threonine and homoser 98.7 3.7E-07 7.9E-12 90.3 15.8 129 124-253 147-281 (293)
48 PRK11689 aromatic amino acid e 98.6 6.5E-07 1.4E-11 88.6 15.0 127 124-253 155-287 (295)
49 PF13536 EmrE: Multidrug resis 98.6 5.7E-07 1.2E-11 75.8 10.5 76 341-417 34-109 (113)
50 PRK11453 O-acetylserine/cystei 98.5 4E-06 8.6E-11 83.2 16.8 127 262-415 6-133 (299)
51 PRK11272 putative DMT superfam 98.5 3.5E-06 7.6E-11 83.3 16.2 131 263-415 11-142 (292)
52 TIGR00803 nst UDP-galactose tr 98.5 1.7E-06 3.7E-11 81.9 13.4 185 212-411 8-221 (222)
53 KOG1582 UDP-galactose transpor 98.5 1.7E-05 3.6E-10 74.8 18.5 256 150-418 70-336 (367)
54 PRK15051 4-amino-4-deoxy-L-ara 98.4 6.6E-06 1.4E-10 69.1 12.6 63 191-253 46-109 (111)
55 COG2962 RarD Predicted permeas 98.4 5E-06 1.1E-10 79.6 12.8 144 258-418 5-148 (293)
56 PRK15051 4-amino-4-deoxy-L-ara 98.4 9.3E-06 2E-10 68.1 13.0 69 346-414 41-109 (111)
57 TIGR00817 tpt Tpt phosphate/ph 98.4 4.2E-06 9.1E-11 83.1 12.6 130 124-253 144-293 (302)
58 KOG1583 UDP-N-acetylglucosamin 98.3 2.5E-06 5.5E-11 80.5 9.1 249 154-416 34-316 (330)
59 TIGR00776 RhaT RhaT L-rhamnose 98.3 6.7E-06 1.5E-10 81.2 12.0 126 124-252 151-287 (290)
60 PRK02971 4-amino-4-deoxy-L-ara 98.2 2.6E-05 5.6E-10 67.2 13.1 119 125-255 2-124 (129)
61 COG0697 RhaT Permeases of the 98.2 4.9E-05 1.1E-09 74.1 16.2 130 124-254 153-288 (292)
62 PTZ00343 triose or hexose phos 98.1 6.6E-05 1.4E-09 76.2 15.7 129 124-252 193-347 (350)
63 PF03151 TPT: Triose-phosphate 98.1 9.4E-05 2E-09 65.4 14.8 125 126-250 1-150 (153)
64 KOG2922 Uncharacterized conser 98.1 2.7E-06 5.8E-11 82.3 5.0 261 121-417 17-309 (335)
65 COG4975 GlcU Putative glucose 98.1 4.3E-07 9.4E-12 84.3 -0.5 263 125-414 2-285 (288)
66 PRK10452 multidrug efflux syst 97.9 9.1E-05 2E-09 62.7 9.9 71 347-417 35-106 (120)
67 COG5006 rhtA Threonine/homoser 97.9 0.00033 7.2E-09 65.7 13.5 126 124-249 147-278 (292)
68 PF06027 DUF914: Eukaryotic pr 97.8 0.00074 1.6E-08 67.5 15.3 77 341-418 79-155 (334)
69 PRK09541 emrE multidrug efflux 97.7 0.00039 8.4E-09 58.1 10.5 70 347-416 35-105 (110)
70 KOG4510 Permease of the drug/m 97.7 3.9E-06 8.5E-11 78.8 -1.7 137 257-416 35-171 (346)
71 PF06800 Sugar_transport: Suga 97.7 0.00093 2E-08 64.4 13.3 126 122-249 135-267 (269)
72 PF10639 UPF0546: Uncharacteri 97.6 0.00022 4.7E-09 59.5 7.5 109 131-251 2-112 (113)
73 PF04657 DUF606: Protein of un 97.6 0.003 6.5E-08 55.1 14.5 131 261-410 2-137 (138)
74 PF08449 UAA: UAA transporter 97.6 0.0021 4.5E-08 63.8 15.4 128 272-418 12-140 (303)
75 PRK10650 multidrug efflux syst 97.6 0.0021 4.6E-08 53.5 12.8 68 184-251 37-106 (109)
76 COG2076 EmrE Membrane transpor 97.6 0.00074 1.6E-08 55.4 9.5 69 348-416 36-105 (106)
77 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00045 9.8E-09 68.4 9.8 123 256-417 3-125 (300)
78 PRK11431 multidrug efflux syst 97.5 0.0011 2.4E-08 54.8 10.0 67 349-415 36-103 (105)
79 PRK10452 multidrug efflux syst 97.4 0.0031 6.8E-08 53.4 12.1 70 185-254 33-104 (120)
80 COG2076 EmrE Membrane transpor 97.4 0.0037 7.9E-08 51.4 12.0 72 181-252 29-102 (106)
81 PRK10650 multidrug efflux syst 97.4 0.0016 3.4E-08 54.3 9.8 66 348-413 41-107 (109)
82 PRK09541 emrE multidrug efflux 97.4 0.0046 1E-07 51.6 12.3 69 186-254 34-104 (110)
83 PRK11431 multidrug efflux syst 97.4 0.0026 5.7E-08 52.6 10.6 70 183-252 30-101 (105)
84 PF04657 DUF606: Protein of un 97.3 0.011 2.5E-07 51.5 14.3 124 127-250 3-138 (138)
85 PRK13499 rhamnose-proton sympo 97.2 0.0029 6.3E-08 63.4 10.4 144 258-419 5-158 (345)
86 COG3238 Uncharacterized protei 97.1 0.027 5.8E-07 49.4 14.2 137 260-414 5-146 (150)
87 PF06379 RhaT: L-rhamnose-prot 97.0 0.44 9.6E-06 47.4 26.8 279 123-415 5-341 (344)
88 PF00893 Multi_Drug_Res: Small 96.9 0.004 8.6E-08 50.5 7.0 58 348-405 35-93 (93)
89 PF07857 DUF1632: CEO family ( 96.8 0.0037 8.1E-08 59.9 7.8 133 261-420 1-140 (254)
90 PF04142 Nuc_sug_transp: Nucle 96.7 0.0081 1.7E-07 57.7 9.1 67 352-418 27-93 (244)
91 PF00893 Multi_Drug_Res: Small 96.4 0.034 7.4E-07 45.0 9.7 56 189-244 36-93 (93)
92 PF10639 UPF0546: Uncharacteri 96.4 0.016 3.5E-07 48.4 7.5 64 348-411 47-111 (113)
93 COG4975 GlcU Putative glucose 96.3 0.0013 2.9E-08 61.6 0.7 133 260-417 2-139 (288)
94 PF07857 DUF1632: CEO family ( 96.2 0.08 1.7E-06 50.9 12.4 159 126-286 1-209 (254)
95 KOG1581 UDP-galactose transpor 95.7 0.097 2.1E-06 50.8 10.3 129 122-250 169-310 (327)
96 COG3238 Uncharacterized protei 95.5 0.72 1.6E-05 40.5 14.1 128 125-252 5-145 (150)
97 TIGR00803 nst UDP-galactose tr 94.8 0.21 4.5E-06 47.1 9.7 127 124-250 84-221 (222)
98 KOG2234 Predicted UDP-galactos 94.5 1.9 4.2E-05 43.0 15.8 66 351-416 101-166 (345)
99 KOG4831 Unnamed protein [Funct 94.2 0.4 8.6E-06 39.1 8.3 110 129-252 7-124 (125)
100 KOG1580 UDP-galactose transpor 94.1 0.43 9.3E-06 44.8 9.6 128 125-252 172-312 (337)
101 KOG2922 Uncharacterized conser 93.8 0.024 5.3E-07 55.4 1.0 126 256-420 17-142 (335)
102 PF07168 Ureide_permease: Urei 93.6 0.021 4.5E-07 55.3 0.1 120 131-250 2-143 (336)
103 KOG1441 Glucose-6-phosphate/ph 93.1 0.29 6.3E-06 48.6 7.3 131 122-252 160-306 (316)
104 KOG2765 Predicted membrane pro 92.3 2 4.3E-05 43.2 11.7 134 122-255 244-392 (416)
105 KOG4314 Predicted carbohydrate 90.6 0.17 3.7E-06 46.1 2.2 63 355-417 66-128 (290)
106 PF06379 RhaT: L-rhamnose-prot 90.3 1.5 3.2E-05 43.7 8.7 145 259-419 6-158 (344)
107 PRK02237 hypothetical protein; 88.5 3.4 7.3E-05 34.0 8.0 46 371-416 62-107 (109)
108 KOG1444 Nucleotide-sugar trans 84.1 24 0.00052 34.9 12.8 57 360-416 95-151 (314)
109 KOG3912 Predicted integral mem 83.3 2.5 5.3E-05 40.9 5.5 64 352-415 96-159 (372)
110 PF02694 UPF0060: Uncharacteri 81.9 2.9 6.3E-05 34.3 4.7 45 372-416 61-105 (107)
111 TIGR03644 marine_trans_1 proba 79.1 59 0.0013 33.7 14.4 64 345-408 297-362 (404)
112 PRK02237 hypothetical protein; 78.5 14 0.00031 30.4 7.7 38 216-253 67-105 (109)
113 KOG1582 UDP-galactose transpor 78.0 14 0.0003 35.8 8.5 105 151-255 218-334 (367)
114 KOG1443 Predicted integral mem 77.2 41 0.0009 33.2 11.7 128 124-251 163-313 (349)
115 PF02694 UPF0060: Uncharacteri 75.1 12 0.00027 30.7 6.4 52 203-254 51-104 (107)
116 PRK09776 putative diguanylate 72.2 1.9E+02 0.0041 33.8 18.1 23 261-283 71-93 (1092)
117 KOG1442 GDP-fucose transporter 70.7 1.3 2.9E-05 42.5 -0.1 115 290-414 60-174 (347)
118 COG1742 Uncharacterized conser 69.7 15 0.00032 30.1 5.6 46 371-416 61-106 (109)
119 COG3169 Uncharacterized protei 69.2 60 0.0013 26.3 11.4 30 384-413 85-114 (116)
120 KOG2322 N-methyl-D-aspartate r 67.2 36 0.00077 32.2 8.5 55 229-283 159-218 (237)
121 PF06570 DUF1129: Protein of u 66.5 77 0.0017 29.4 10.8 21 52-72 21-41 (206)
122 TIGR02865 spore_II_E stage II 65.2 1.3E+02 0.0027 34.1 14.0 45 208-252 10-55 (764)
123 PF04342 DUF486: Protein of un 63.3 7.6 0.00016 31.8 2.9 30 383-412 77-106 (108)
124 PF07168 Ureide_permease: Urei 63.1 5.7 0.00012 39.0 2.5 143 266-416 2-148 (336)
125 PF06570 DUF1129: Protein of u 61.7 1.4E+02 0.0029 27.7 11.6 13 344-356 183-195 (206)
126 COG1742 Uncharacterized conser 61.3 56 0.0012 26.8 7.4 36 219-254 69-105 (109)
127 PF03348 Serinc: Serine incorp 60.7 2.2E+02 0.0047 29.8 24.1 61 346-419 248-308 (429)
128 COG5070 VRG4 Nucleotide-sugar 60.1 40 0.00086 31.8 7.3 99 149-247 181-290 (309)
129 PF05977 MFS_3: Transmembrane 57.2 2.8E+02 0.006 29.8 22.9 41 373-413 351-391 (524)
130 KOG4831 Unnamed protein [Funct 55.7 11 0.00024 30.9 2.6 59 355-413 65-124 (125)
131 KOG2766 Predicted membrane pro 55.7 15 0.00033 35.2 3.9 131 121-253 162-299 (336)
132 PF05297 Herpes_LMP1: Herpesvi 54.4 4.2 9E-05 39.3 0.0 74 193-266 33-113 (381)
133 KOG3817 Uncharacterized conser 54.3 55 0.0012 32.9 7.6 79 137-215 201-284 (452)
134 PRK11715 inner membrane protei 53.6 2E+02 0.0042 30.2 12.0 73 180-252 329-403 (436)
135 COG3086 RseC Positive regulato 53.4 24 0.00052 30.8 4.4 42 207-248 73-114 (150)
136 PF09852 DUF2079: Predicted me 52.9 2.5E+02 0.0055 29.4 13.1 119 152-276 58-187 (449)
137 PF09656 PGPGW: Putative trans 52.5 58 0.0013 23.3 5.6 46 236-285 4-49 (53)
138 COG2814 AraJ Arabinose efflux 49.9 3.1E+02 0.0068 28.3 17.1 110 205-314 44-161 (394)
139 COG3476 Tryptophan-rich sensor 48.7 2E+02 0.0043 25.7 9.9 62 353-414 62-124 (161)
140 PF03547 Mem_trans: Membrane t 47.7 1.9E+02 0.0041 29.3 11.0 10 305-314 40-49 (385)
141 COG3086 RseC Positive regulato 47.7 19 0.00042 31.3 3.0 30 362-391 68-97 (150)
142 COG4657 RnfA Predicted NADH:ub 45.6 2.2E+02 0.0049 25.4 10.9 83 230-312 94-187 (193)
143 PF06123 CreD: Inner membrane 45.3 3.3E+02 0.0071 28.5 12.1 69 182-251 325-396 (430)
144 PRK13108 prolipoprotein diacyl 45.0 1.5E+02 0.0032 31.4 9.6 49 370-418 225-278 (460)
145 PF04246 RseC_MucC: Positive r 44.9 32 0.0007 29.5 4.1 42 207-248 66-107 (135)
146 KOG1583 UDP-N-acetylglucosamin 44.2 1.3E+02 0.0029 29.4 8.3 129 124-252 163-313 (330)
147 PF04474 DUF554: Protein of un 43.9 2.9E+02 0.0062 26.2 13.7 45 212-256 4-54 (226)
148 PLN00028 nitrate transmembrane 42.8 4.2E+02 0.009 27.7 14.2 16 399-414 417-432 (476)
149 PF12811 BaxI_1: Bax inhibitor 42.5 3.4E+02 0.0073 26.6 21.9 48 259-310 209-260 (274)
150 COG2271 UhpC Sugar phosphate p 42.2 3E+02 0.0066 28.8 11.1 44 375-419 166-210 (448)
151 PF04246 RseC_MucC: Positive r 41.7 34 0.00073 29.4 3.7 26 364-389 63-88 (135)
152 PF04342 DUF486: Protein of un 41.6 2E+02 0.0044 23.7 9.4 28 224-251 78-106 (108)
153 COG2917 Intracellular septatio 41.4 2.7E+02 0.0059 25.2 9.3 81 195-275 9-93 (180)
154 TIGR00836 amt ammonium transpo 37.7 4.8E+02 0.011 27.0 14.7 47 206-252 155-207 (403)
155 KOG4255 Uncharacterized conser 36.8 4.7E+02 0.01 26.6 13.0 92 269-376 59-150 (439)
156 PRK10862 SoxR reducing system 36.6 42 0.00092 29.7 3.6 25 207-231 73-97 (154)
157 PF01102 Glycophorin_A: Glycop 35.9 33 0.00072 29.1 2.6 20 399-418 74-93 (122)
158 PRK12437 prolipoprotein diacyl 35.2 2.4E+02 0.0051 27.4 8.9 48 370-417 206-258 (269)
159 PF09605 Trep_Strep: Hypotheti 35.0 3.5E+02 0.0076 24.6 13.3 69 183-253 3-75 (186)
160 PF09586 YfhO: Bacterial membr 34.3 7.4E+02 0.016 28.1 20.3 79 153-236 92-170 (843)
161 COG1575 MenA 1,4-dihydroxy-2-n 33.3 4.9E+02 0.011 25.8 15.3 54 344-399 123-179 (303)
162 PRK10263 DNA translocase FtsK; 32.4 3.3E+02 0.0072 32.6 10.6 14 267-280 143-156 (1355)
163 PRK11715 inner membrane protei 31.7 6.3E+02 0.014 26.5 14.0 25 149-173 327-351 (436)
164 PRK06638 NADH:ubiquinone oxido 31.6 4.2E+02 0.009 24.4 12.8 32 383-414 133-164 (198)
165 TIGR00905 2A0302 transporter, 30.4 6.5E+02 0.014 26.3 19.3 21 397-417 417-437 (473)
166 PF08507 COPI_assoc: COPI asso 29.0 95 0.0021 26.7 4.5 29 385-414 77-105 (136)
167 PF10101 DUF2339: Predicted me 28.4 8.6E+02 0.019 27.1 30.9 44 372-415 226-271 (745)
168 PRK10862 SoxR reducing system 27.7 83 0.0018 27.9 3.9 27 363-389 69-95 (154)
169 COG2245 Predicted membrane pro 27.3 4.7E+02 0.01 23.6 12.3 16 398-413 152-167 (182)
170 PF06123 CreD: Inner membrane 26.6 7.6E+02 0.016 25.9 16.4 24 149-172 321-344 (430)
171 PLN02776 prenyltransferase 26.0 7E+02 0.015 25.2 22.0 46 228-274 118-165 (341)
172 PF04279 IspA: Intracellular s 24.4 5.3E+02 0.011 23.3 15.2 61 195-255 9-71 (176)
173 PRK00293 dipZ thiol:disulfide 23.9 9.6E+02 0.021 26.1 23.5 14 259-272 294-307 (571)
174 KOG0569 Permease of the major 23.0 9.3E+02 0.02 25.6 15.1 17 389-405 176-192 (485)
175 COG4452 CreD Inner membrane pr 21.5 8.9E+02 0.019 24.9 12.6 72 178-250 321-395 (443)
176 TIGR01299 synapt_SV2 synaptic 21.4 1.2E+03 0.026 26.3 15.7 39 374-412 692-731 (742)
177 COG1030 NfeD Membrane-bound se 21.3 9.6E+02 0.021 25.1 11.1 67 188-255 260-326 (436)
178 PF12805 FUSC-like: FUSC-like 20.3 6.3E+02 0.014 24.5 9.0 56 228-284 42-97 (284)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=4.6e-31 Score=265.83 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=219.2
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcc--ccc--ch---hhHHHHHHHHHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARD--DVK--TR---NAGIELGLWVSL 194 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~--~~---~~~l~~gl~~~~ 194 (468)
+.+.++.+++..+..+...++.|.+.+ +++|+.+.++|+.++.++++++.+++++ +++ .+ ....+.|++++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 456788899999999999999998655 6999999999999999999888765432 111 12 234455666655
Q ss_pred HHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H------hcCccchhHHHHHHHHHHhhhhhccCCC-----------
Q 012208 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-M------LGAIIPAHTWFGVLISALGVGMLECSGS----------- 256 (468)
Q Consensus 195 ~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~------l~er~~~~~~~gi~l~l~Gv~li~~~~~----------- 256 (468)
.+.+++.|++|++++.++++.++.|+++.++++ + +|||+++.+++|++++++|+.++...++
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 566899999999999999999999999999999 5 4999999999999999999998764211
Q ss_pred --------------C-CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 012208 257 --------------P-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQD 321 (468)
Q Consensus 257 --------------~-~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 321 (468)
. ...|++++++++++|++|.++.|+..++++ +....++++..++++...+..+..+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l~~~~~-~~~~ 247 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGLVVEKN-NPSV 247 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHHHHccC-Cccc
Confidence 0 134999999999999999999999988763 334556677776666655554443211 0100
Q ss_pred CCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHH
Q 012208 322 FDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIG 401 (468)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG 401 (468)
. ...+ + . .+..+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|
T Consensus 248 ~-~~~~------~---~-~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG 315 (358)
T PLN00411 248 W-IIHF------D---I-TLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG 315 (358)
T ss_pred c-eecc------c---h-HHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 0 0000 0 1 13346677765 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC
Q 012208 402 AALVLGGSLLVQMYRSS 418 (468)
Q Consensus 402 ~~lIi~Gv~l~~~~~~~ 418 (468)
+++|++|+++..+.+++
T Consensus 316 ~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 316 GILITLGFYAVMWGKAN 332 (358)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999998865443
No 2
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=2.2e-30 Score=256.15 Aligned_cols=270 Identities=18% Similarity=0.157 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHh
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLL 204 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~ 204 (468)
++.+++++++++||++++..|...++++|+.+.++|+.++.++++++..+++.++..++..+..++..+....+++.+++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 83 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLG 83 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999888766422222222222333334434455566677775
Q ss_pred ----cCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC------------CCcHHHHHHHH
Q 012208 205 ----TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLNFL 267 (468)
Q Consensus 205 ----~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~------------~~~~G~llall 267 (468)
+++++.++++.++.|+++.++++ ++|||+++++++|+++++.|++++..++. ....|++++++
T Consensus 84 ~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 163 (295)
T PRK11689 84 YANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFI 163 (295)
T ss_pred HhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHH
Confidence 46788899999999999999999 78999999999999999999999876532 12459999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHH
Q 012208 268 SAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYT 347 (468)
Q Consensus 268 aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l 347 (468)
++++||+|.++.||..++. ++..... ..+++...+.....+ .. ... +. ...|..+++.
T Consensus 164 aa~~~A~~~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~---~~-~~~---~~---------~~~~~~l~~~ 221 (295)
T PRK11689 164 GAFIWAAYCNVTRKYARGK---NGITLFF---ILTALALWIKYFLSP---QP-AMV---FS---------LPAIIKLLLA 221 (295)
T ss_pred HHHHHHHHHHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhc---Cc-ccc---CC---------HHHHHHHHHH
Confidence 9999999999999987664 4444321 222233222222211 11 011 11 1236677777
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 348 GIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
+ ++++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus 222 ~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 222 A-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred H-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 7 46899999999999999999999999999999999999999999999999999999999988876443
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=4.5e-30 Score=253.60 Aligned_cols=273 Identities=16% Similarity=0.226 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccc---cchhhHHHHHHHH-HHHHHHHHH
Q 012208 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV---KTRNAGIELGLWV-SLGYFVEAL 201 (468)
Q Consensus 126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~---~~~~~~l~~gl~~-~~~~~~~~~ 201 (468)
-++.+++..++||+++++.|...++++|.+++++|+.++.++++++...++++. +.+.+....|.++ ..++.++++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999888999999999999999999888776654332 2233344556654 456788888
Q ss_pred HH-hcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC--CCCcHHHHHHHHHHHHHHHHHHH
Q 012208 202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG--SPPSVGDFLNFLSAIFFGIHMLR 278 (468)
Q Consensus 202 Al-~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~~~G~llallaa~~~a~~~v~ 278 (468)
+. ++++++.++++.++.|+++.+++.++|||+++++++|+++++.|+.++..++ +....|++++++++++||.|.+.
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999999999987799999999999999999999986543 23357999999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 012208 279 TERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358 (468)
Q Consensus 279 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l 358 (468)
.|+..++ ++.....+++.+++++..+.....+... . ... +...|..+++++++++++++.+
T Consensus 169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~------------~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERL--T-ALP------------TLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcc--c-ccC------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 9997643 3345567777777777666544332110 0 000 1224888999999999999999
Q ss_pred HHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 359 ~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999876543
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.98 E-value=1.1e-29 Score=251.66 Aligned_cols=278 Identities=17% Similarity=0.178 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH-HHHHHHHHHHhc
Q 012208 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT 205 (468)
Q Consensus 127 ~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~-~~~~~~~~Al~~ 205 (468)
.++.++++++||+++++.|...++++|..+.++|+.++.+.++++..+++ ..++..+..|++.. ..+.+++.++++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPK---VPLNLLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999888999999999999998777665543222 22333444455443 344577789888
Q ss_pred -CchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---C-CcHHHHHHHHHHHHHHHHHHHH
Q 012208 206 -SDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHMLRT 279 (468)
Q Consensus 206 -~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---~-~~~G~llallaa~~~a~~~v~~ 279 (468)
.|++.++++.++.|+++.++++ ++|||+++++++|++++++|+.++..++. . ...|++++++++++|++|.++.
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 78999999999999999999999885431 1 2369999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 012208 280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE 359 (468)
Q Consensus 280 r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~ 359 (468)
|+..++.+.........+.+.++.+.........+...... .....+ +...|..++++++++++++|.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTI---------DMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccC---------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876543223344445555544433332222222111000 000011 12358889999999999999999
Q ss_pred HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999988776543
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=1.7e-29 Score=249.84 Aligned_cols=274 Identities=13% Similarity=0.079 Sum_probs=203.9
Q ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc------ccchhh---HHHHHHH
Q 012208 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD------VKTRNA---GIELGLW 191 (468)
Q Consensus 121 ~~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~---~l~~gl~ 191 (468)
+++.+|.+++++++++||.++++.|.. ++++|.++.++|+.++.++++++...+++. .+.++. .+..++.
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 355689999999999999999999986 569999999999999988777665443211 111222 2233455
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHH
Q 012208 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270 (468)
Q Consensus 192 ~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~ 270 (468)
.+.++.++++|++++|+++++++.++.|+++.++++ ++|||+++++++|++++++|++++..+.++. .++++++++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~ 159 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAF 159 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHH
Confidence 667899999999999999999999999999999999 7899999999999999999999987543322 257889999
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHH
Q 012208 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF 350 (468)
Q Consensus 271 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~ 350 (468)
+|+.|.+..|+..++.. .+......+.+.++.+... ..... ........+ ..+...++.+.+
T Consensus 160 ~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~------------~~~~~~~~~~g~ 221 (296)
T PRK15430 160 SFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIYLF----AIADS-STSHMGQNP------------MSLNLLLIAAGI 221 (296)
T ss_pred HHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHH----HHccC-CcccccCCc------------HHHHHHHHHHHH
Confidence 99999999888754211 1222222333333322211 11110 000000001 012233444444
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|++|+.+.....
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999998888876544
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=6.2e-29 Score=245.53 Aligned_cols=270 Identities=16% Similarity=0.161 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD--DVKTRNAGIELGLWVSLGYFVEA 200 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~~~~~~l~~gl~~~~~~~~~~ 200 (468)
+.+++.++++++++|+.++.+.|++.++++|..+.++|++++.++++++...++. +++.++..+..|++.+..+.+++
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY 89 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999988999999999999999888877654332 23444556677888888889999
Q ss_pred HHHhcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHH
Q 012208 201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHM 276 (468)
Q Consensus 201 ~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~ 276 (468)
+|++++|++.++++.++.|+++.+++ +||+. +..++.+++.|+.++..++ +....|++++++++++|++|.
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 164 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI 164 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 35554 4456778899999876432 123569999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHH
Q 012208 277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL 356 (468)
Q Consensus 277 v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~ 356 (468)
+..|+..++. ++... .+...+++++..++...... . .. +. ...|...+++|+++++++|
T Consensus 165 v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~----~-~~---~~---------~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 165 LSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG----E-AL---WH---------WSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC----c-cc---CC---------HHHHHHHHHHHHHHHHHHH
Confidence 9999997663 45554 45556666665554433221 0 00 11 1135567899999999999
Q ss_pred HHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 357 WIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 357 ~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..++.++
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999998876543
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=8.6e-28 Score=233.04 Aligned_cols=254 Identities=19% Similarity=0.246 Sum_probs=209.6
Q ss_pred HhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHH-HHHHHHHHHHHHhcCchhhHHHH
Q 012208 137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI 214 (468)
Q Consensus 137 wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~-~~~~~~~~~~Al~~~~~~~a~ii 214 (468)
||.+++..|...+ ..++..+.+.|+..+.+++.++..++ ++++.+.+.+..|.+ ..+++.++++|++++++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 8999999999765 58899999999999888887766554 333344445555554 56788999999999999999999
Q ss_pred hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 012208 215 SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF 291 (468)
Q Consensus 215 ~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~ 291 (468)
.++.|+++.+++. ++|||+++++++|+++++.|++++..++ +....|++++++++++|+++.++.|+..++.++ ++
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~ 158 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-EL 158 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hH
Confidence 9999999999999 7899999999999999999999987654 344689999999999999999999998876421 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHH
Q 012208 292 LPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATET 371 (468)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~ 371 (468)
.....+++.++.++..+......... .. . ...|..++++++++++++|.+|++++++.++.++
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPNP---QA--L------------SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC---Cc--c------------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 44555667777777776655432111 11 1 1137778899999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHH
Q 012208 372 AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGS 409 (468)
Q Consensus 372 s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv 409 (468)
+.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999985
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.95 E-value=2.6e-26 Score=227.90 Aligned_cols=276 Identities=11% Similarity=0.049 Sum_probs=208.9
Q ss_pred hhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHH--hcc---cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 012208 138 ASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFW--ARD---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (468)
Q Consensus 138 g~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~--~~~---~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a 211 (468)
-...+..|++.++ ..|..++++|+.++.+.+.+.... +++ +++.++..++.|++++....+.++++++++++.+
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~ 94 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT 94 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444678988887 669999999999988777665321 111 2334566778899988889999999999999999
Q ss_pred HHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012208 212 SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSP-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289 (468)
Q Consensus 212 ~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~-~~~G~llallaa~~~a~~~v~~r~~~~~~~~~ 289 (468)
+++.++.|++++++++ ++|||+++++++|++++++|+++....+.+ ...|++++++++++|++|.++.||..++ ++.
T Consensus 95 ~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~ 173 (302)
T TIGR00817 95 HTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSL 173 (302)
T ss_pred HHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC
Confidence 9999999999999999 789999999999999999999887644433 3469999999999999999999998762 135
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012208 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSAT 369 (468)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~ 369 (468)
|+..+..|++..+.+..+|+....+...... .+...+. ..+.....+...+..+..+....+.+++.++++.+|+
T Consensus 174 ~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~ 248 (302)
T TIGR00817 174 DKTNLYAYISIMSLFLLSPPAFITEGPPFLP-HGFMQAI----SGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL 248 (302)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHcchHHHH-HHHHHhh----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 8889999999999988888876543211100 0000000 0000000122222333323333345667899999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 370 ETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 370 ~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
++++..+++|+++++++++++||++++.+++|++++++|++++.+.++++
T Consensus 249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999998765443
No 9
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.95 E-value=4.6e-29 Score=229.90 Aligned_cols=275 Identities=16% Similarity=0.157 Sum_probs=222.0
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLWVSLGYF 197 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~----~~~~~~~~~l~~gl~~~~~~~ 197 (468)
++..|+++..++.++-..+.+..|.+. .+|.+..-.|+++-+++..+....++ ++...|++++++|+.++.+..
T Consensus 35 ~p~~gl~l~~vs~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CCccCceehhhHHHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 566788888888555555555555544 68999998887766666555444433 345668888999999999999
Q ss_pred HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---------------CCcHH
Q 012208 198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG 261 (468)
Q Consensus 198 ~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---------------~~~~G 261 (468)
+.|||++|++.++|++|++++|+++.++++ ++||+.++.+.++.++.+.||++|..+.. .+..|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 999999999999999999999999999999 89999999999999999999999987631 23678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208 262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW 341 (468)
Q Consensus 262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (468)
.+.++.++++.|.-+++.|++.++. |....+.|..+++.+..+......+ ....++... .|
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig-~~~lP~cgk---------------dr 253 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIG-AVQLPHCGK---------------DR 253 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhcc-ceecCcccc---------------ce
Confidence 9999999999999999999998885 4455556666676666665544443 223333222 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
+.++.+|+++ ++++.+.++++|+..|+.++++.+++.++|.+++.++|||.|++++|.|+++|+.+.+.+...+..
T Consensus 254 ~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 254 WLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred EEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 6677888875 678888899999999999999999999999999999999999999999999999999888776543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1.3e-24 Score=219.49 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhc---ccc----cchhhHHHHHHHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWAR---DDV----KTRNAGIELGLWVSLG 195 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~---~~~----~~~~~~l~~gl~~~~~ 195 (468)
.+..++.+....+-.......|.+.+.++ |+.++.+|++++.+++.+++..+. ++. ..++..+..|+++...
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~ 127 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666777899888999 999999999999887665543321 111 1344567889988877
Q ss_pred HHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHH
Q 012208 196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFG 273 (468)
Q Consensus 196 ~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a 273 (468)
+.+.+.|+++++++.++++..+.|++++++++ ++|||++++++++++++++|+.+.+..+.+. ..|++++++++++++
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a 207 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS 207 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999 7999999999999999999999988655433 569999999999999
Q ss_pred HHHHHHHHHhhccC----CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C-CCCchhhhhccccchhhHHHHHHH
Q 012208 274 IHMLRTERISRSTK----KENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-D-QSPWTWTMLWDWMVTFPWVPALYT 347 (468)
Q Consensus 274 ~~~v~~r~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ll~l 347 (468)
++.++.|+..++.+ +.++..+..+....+.++.+|+....+........ . ...+. ...+..+++
T Consensus 208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~l~- 277 (350)
T PTZ00343 208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT---------NYTKGIIIF- 277 (350)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc---------ccchHHHHH-
Confidence 99999999887643 24556566666888888888877654321100000 0 00000 001223344
Q ss_pred HHHHHHHHHHHHHH----HhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 348 GIFSTGICLWIEIA----AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 348 gv~~~~~~~~l~~~----al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
.++.+++.+.+|+. ++++++|...++..+++|+++++++++++||++++.+++|++++++|+++++..
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 35556888888884 999999999999999999999999999999999999999999999999998764
No 11
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.94 E-value=1.7e-24 Score=209.71 Aligned_cols=241 Identities=14% Similarity=0.143 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc------ccc--chh----hHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVK--TRN----AGIELGLWV 192 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~------~~~--~~~----~~l~~gl~~ 192 (468)
+|++++++++++||+++++.|.. ++++|.++.++|++++.++++++...+++ +.+ .++ .....|++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 47889999999999999999984 46999999999999999887766533221 111 111 234557777
Q ss_pred HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHH
Q 012208 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF 271 (468)
Q Consensus 193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~ 271 (468)
+.++.++++|++++++++++++.++.|+++.++++ ++|||+++++++++++++.|++++..++++. .+++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~ 157 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence 88899999999999999999999999999999999 8999999999999999999999886543322 1468999999
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHH
Q 012208 272 FGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFS 351 (468)
Q Consensus 272 ~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~ 351 (468)
|++|.+..|+..++ +....... .....+...+....... ........ ...|..+++.|++
T Consensus 158 ~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~l~~~g~~- 217 (256)
T TIGR00688 158 FTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-ATVQQTNP-------------FPIWLLLVLAGLI- 217 (256)
T ss_pred HHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-CcccccCc-------------hhHHHHHHHHHHH-
Confidence 99999999987653 22222111 11111122211111111 11000000 0137777777876
Q ss_pred HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH
Q 012208 352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL 389 (468)
Q Consensus 352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~l 389 (468)
+.++|.+|++++++.++++++++.|++|+++.+++.++
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999875
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=2.3e-24 Score=211.73 Aligned_cols=267 Identities=14% Similarity=0.143 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh--ccccc-----chhhHHHHHHHHHHHHHHH
Q 012208 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RDDVK-----TRNAGIELGLWVSLGYFVE 199 (468)
Q Consensus 127 ~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~~-----~~~~~l~~gl~~~~~~~~~ 199 (468)
+++.++++++|+...+..|...+..++. .+++...+.++++++..++ +..++ .+...+..++....++.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999655544443 4666667777777666543 11111 1222334455677888999
Q ss_pred HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--CCcHHHHHHHHHHHHHHHHH
Q 012208 200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM 276 (468)
Q Consensus 200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~--~~~~G~llallaa~~~a~~~ 276 (468)
++|+++++++.++++.++.|+++.++++ ++|||+++++++|+++++.|++++..++. ....|+.++++++++|++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 79999999999999999999999875432 33468889999999999999
Q ss_pred HHHHHHhhccCCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHH
Q 012208 277 LRTERISRSTKKE-NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355 (468)
Q Consensus 277 v~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~ 355 (468)
+..|+..++.++. +......+.+...+ .++........... .... ...+..+++.++++++++
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAMG---WPFLLLYLKRHGRS-MFPY------------ARQILPSATLGGLMIGGA 224 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHHH---HHHHHHHHHHhccc-hhhh------------HHHHHHHHHHHHHHHHHH
Confidence 9988865443211 11112222222221 22222111000000 0000 012556778888999999
Q ss_pred HHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208 356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL 411 (468)
Q Consensus 356 ~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l 411 (468)
|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=2.4e-22 Score=198.75 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=219.3
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhh-cCC-HHHHHHHHHHHHHHHHHHHHHHhccc-------ccchhhHHHHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMH-PASFCAVRFVMSAIPFLPFVFWARDD-------VKTRNAGIELGLWV 192 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~l~~gl~~ 192 (468)
+..+.+++.=+.+++-..+...+..+.+ +++ |....++-+++-.++..++...|++. ++.+++.++++++.
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence 3345666666677777777888876544 344 77888888877777666665555432 23455677889999
Q ss_pred HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC----------CCCcHH
Q 012208 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVG 261 (468)
Q Consensus 193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~----------~~~~~G 261 (468)
..++++.+.|++|++.+.++++..+..++++++++ ++|+|+++.+++|++++++|++++...+ ++...|
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~G 169 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILG 169 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchh
Confidence 99999999999999999999999999999999999 8999999999999999999999876442 234799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208 262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW 341 (468)
Q Consensus 262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (468)
++++++++++||+++++.++..++. +.....++..+++.++..+...+.+. .+.. ...|.+. .+
T Consensus 170 Dll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~---~~~w~~~---------~~ 233 (334)
T PF06027_consen 170 DLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILER-SGIE---SIHWTSQ---------VI 233 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheeh-hhhh---ccCCChh---------hH
Confidence 9999999999999999999998874 56677777777777777665544332 1222 1222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
. .+....++..+-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|++++...+.+.
T Consensus 234 ~-~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 234 G-LLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 2 2233344566778888899999999999999999999999999999999999999999999999999988766544
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=1e-21 Score=192.54 Aligned_cols=271 Identities=25% Similarity=0.316 Sum_probs=211.8
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHhc--ccccch---hhHHHHHHHHHHHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTR---NAGIELGLWVSLGY 196 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~--~~~~~~---~~~l~~gl~~~~~~ 196 (468)
...+..+.++..+.|+.+....|...++ .++....+.|...+.+...+...+++ ..+... +..+..++....+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 3467778888889999999999998776 77777778899988887544444332 111221 22334445567788
Q ss_pred HHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H-hcCccchhHHHHHHHHHHhhhhhccCCCCC----cHHHHHHHHHHH
Q 012208 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-M-LGAIIPAHTWFGVLISALGVGMLECSGSPP----SVGDFLNFLSAI 270 (468)
Q Consensus 197 ~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~-l~er~~~~~~~gi~l~l~Gv~li~~~~~~~----~~G~llallaa~ 270 (468)
.+++.++++++++.++++.++.|+++.+++. + +|||+++.+++++++++.|++++..++... ..|+++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 5 599999999999999999999999876543 479999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHH
Q 012208 271 FFGIHMLRTERISRSTKKENFLPLLG-YEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349 (468)
Q Consensus 271 ~~a~~~v~~r~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv 349 (468)
+++++.+..|+.. + .++..... +.+........+. ...... .... ...|..+.+.|+
T Consensus 165 ~~a~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~--------------~~~~~~~~~~g~ 222 (292)
T COG0697 165 LWALYTALVKRLS-R---LGPVTLALLLQLLLALLLLLLF--FLSGFG--APIL--------------SRAWLLLLYLGV 222 (292)
T ss_pred HHHHHHHHHHHhc-C---CChHHHHHHHHHHHHHHHHHHH--Hhcccc--ccCC--------------HHHHHHHHHHHH
Confidence 9999999999887 3 24455544 3333111111111 111111 0010 124788889999
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
+++++++.+|++++++.++..++.+.+++|+++++++++++||+++..+++|+++++.|+.+....
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999899999999999999999999999999999999999999999999999999999999988865
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.90 E-value=2.1e-21 Score=178.57 Aligned_cols=268 Identities=19% Similarity=0.166 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHH
Q 012208 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD--DVKTRNAGIELGLWVSLGYFVEALGL 203 (468)
Q Consensus 126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~~~~~~l~~gl~~~~~~~~~~~Al 203 (468)
.++.++.++..--....+.|.+...+++..++.+|..++.++++++++..++ .++.+...+..|...+..+++||.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777778889999999999999999999999999988876543 45677788889999999999999999
Q ss_pred hcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHHHHH
Q 012208 204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRT 279 (468)
Q Consensus 204 ~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~v~~ 279 (468)
+.+|.+.+..|.++-|+.+.+++ ..+.++.+.+.+++.|+.++.-.+ ..+..|..+++.++.||++|.+..
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~~-----sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALLS-----SRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HhccchhhhhhhhccHHHHHHHh-----ccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 99999999999999999888773 234566777788889988876443 456799999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 012208 280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE 359 (468)
Q Consensus 280 r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~ 359 (468)
+|..+.. +...-+...+.++.++.+|+........-. ++......+.++++++++.|.+-
T Consensus 168 ~r~g~~~---~g~~g~a~gm~vAaviv~Pig~~~ag~~l~-----------------~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 168 QRAGRAE---HGTAGVAVGMLVAALIVLPIGAAQAGPALF-----------------SPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred chhcccC---CCchHHHHHHHHHHHHHhhhhhhhcchhhc-----------------ChHHHHHHHHHHHHhcccchHHH
Confidence 9998643 445666677888888887775543221111 12235667888999999999999
Q ss_pred HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
..++++.++...++++.++|.++.+.|++++||.+|+.||+|+++|+.+..-..+..+|
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999998876665444
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=170.52 Aligned_cols=272 Identities=17% Similarity=0.178 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc---------ccchhhHHHHHHHHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD---------VKTRNAGIELGLWVS 193 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---------~~~~~~~l~~gl~~~ 193 (468)
..+|+++.+.+.++||......|.+. +.++.++...|.....++++.+....|+. ++......+.+++.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 35799999999999999999999875 49999999999999988887766554322 222223345577788
Q ss_pred HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHHH
Q 012208 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF 272 (468)
Q Consensus 194 ~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~~ 272 (468)
..+..|.+|.....+-+++.-.+..|++.++++. |+|||+++.|+++++++.+||.......+.. -+.++.=+++|
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l---pwval~la~sf 160 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL---PWVALALALSF 160 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC---cHHHHHHHHHH
Confidence 8899999999999999999999999999999999 8999999999999999999999866443222 24556668899
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHH
Q 012208 273 GIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFST 352 (468)
Q Consensus 273 a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~ 352 (468)
+.|...-|+.. +|+.+-....++...+.++...+..+..... ..... ...|.+++..|. .+
T Consensus 161 ~~Ygl~RK~~~-----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~--~~~~~-----------~~~~~LLv~aG~-vT 221 (293)
T COG2962 161 GLYGLLRKKLK-----VDALTGLTLETLLLLPVALIYLLFLADSGQF--LQQNA-----------NSLWLLLVLAGL-VT 221 (293)
T ss_pred HHHHHHHHhcC-----CchHHhHHHHHHHHhHHHHHHHHHHhcCchh--hhcCC-----------chHHHHHHHhhH-HH
Confidence 99998655442 4667777777777777777666665543320 11011 012445554455 57
Q ss_pred HHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 353 GICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 353 ~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
+++..+|..|-++.+-+..+.+.|.+|..-.+++.+++||+++..+++..++|..|.+++....-
T Consensus 222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999886543
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.86 E-value=1.3e-19 Score=178.60 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccc----hhhHHHHHHHHHHHHHHHHH
Q 012208 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT----RNAGIELGLWVSLGYFVEAL 201 (468)
Q Consensus 126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~----~~~~l~~gl~~~~~~~~~~~ 201 (468)
++++.++++++||++.+..|... +.++.++. |..++.+++..+....+.++.. ....+..|+.+..++++++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 57889999999999999999876 67787775 7877777766554443322222 22344556667888899999
Q ss_pred HHhcCchhhHHHHhh-hhHHHHHHHHH-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHH
Q 012208 202 GLLTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF 266 (468)
Q Consensus 202 Al~~~~~~~a~ii~~-~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llal 266 (468)
|+++++++.+..+.. +.+++..+++. ++||+.++++ .+|+++++.|++++...+. ....|.++++
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l 158 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL 158 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence 999999999999987 88888888888 7999999999 9999999999999865321 1258999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHH
Q 012208 267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC---VVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVP 343 (468)
Q Consensus 267 laa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (468)
+++++|+.|.+..|+.. .++....+.+.. +++++..+. .. .. . ++. .+.++.
T Consensus 159 ~sg~~y~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~-~-----~~~---------~~~~~~ 213 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAFG-----VDGLSVLLPQAIGMVIGGIIFNLG---HI--LA-K-----PLK---------KYAILL 213 (290)
T ss_pred HHHHHHHHHHHHHHHcC-----CCcceehhHHHHHHHHHHHHHHHH---Hh--cc-c-----chH---------HHHHHH
Confidence 99999999999999762 356666444333 333322221 10 00 0 000 111333
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHHHHHHh
Q 012208 344 ALYTGIFSTGICLWIEIAAMR-DVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGW----IGAALVLGGSLLVQM 414 (468)
Q Consensus 344 ll~lgv~~~~~~~~l~~~al~-~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~----iG~~lIi~Gv~l~~~ 414 (468)
.+..|++ ..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||..++.++ +|+++|+.|+.+...
T Consensus 214 ~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 214 NILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 3347777 7999999999999 99999999999999999999999999999999999 999999999988754
No 18
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=2.6e-18 Score=166.43 Aligned_cols=221 Identities=14% Similarity=0.167 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--------
Q 012208 186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS-------- 256 (468)
Q Consensus 186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-------- 256 (468)
+..+.+++++++.++.|+.+++++..+++.+++-+|+..++. +..||+++.++++++++++||+++...++
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a 242 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence 445667889999999999999999999999999999999999 56899999999999999999999986632
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcc
Q 012208 257 -PPSVGDFLNFLSAIFFGIHMLRTERISRST-KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWD 334 (468)
Q Consensus 257 -~~~~G~llallaa~~~a~~~v~~r~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (468)
....|.++++++|+.||+|.++.||-..+. +++|.-.+..+..++..+++.|..++.... ..+..+...
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~-------- 313 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPS-------- 313 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCC--------
Confidence 336899999999999999999999988776 466766666666666667777666665444 222222111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 335 WMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 335 ~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
..+...++..++++++++-.+|.+|+-..++..+++.+.+++..+++.+.++-|..+++.+++|.+.|++|.+++++
T Consensus 314 ---~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 314 ---STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred ---CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 11245577888999999999999999999999999999999999999999998999999999999999999999987
Q ss_pred ccCC
Q 012208 415 YRSS 418 (468)
Q Consensus 415 ~~~~ 418 (468)
..+.
T Consensus 391 ~~~~ 394 (416)
T KOG2765|consen 391 SSEN 394 (416)
T ss_pred cccc
Confidence 6643
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.75 E-value=1.2e-15 Score=151.47 Aligned_cols=255 Identities=17% Similarity=0.192 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (468)
Q Consensus 152 ~p~~~~~~R~~~a~l~ll~~~~~~~---~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~- 227 (468)
.|..+++.++....+...+.....+ .++...+.++..+++..++..+.+.|++|+|...-.++....|+.+++++.
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 3889999999888877776665544 234456677888999999999999999999999999999999999999998
Q ss_pred HhcCccchhHHHHHHHHHHhhhhhccCCC-----C------CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q 012208 228 MLGAIIPAHTWFGVLISALGVGMLECSGS-----P------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG 296 (468)
Q Consensus 228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~~-----~------~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~ 296 (468)
++|+|+++.+++++++..+|+++....+. . ...|+++.+++.++.+...++.++..++++ .++...++
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mf 189 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG-KSPWELMF 189 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence 79999999999999999999999875431 1 123999999999999999999999998765 57788999
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 012208 297 YEICVVALLSTIWVLVG--GWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII 374 (468)
Q Consensus 297 ~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~ 374 (468)
+...++.+...+..... +...+....- ..++..+..++...+ ++.+++...+...++.++...+++
T Consensus 190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~-----------~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v 257 (303)
T PF08449_consen 190 YTNLFSLPFLLILLFLLPTGEFRSAIRFI-----------SAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIV 257 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHH-----------HHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhH
Confidence 99999888877766662 2111100000 001122444444444 456666666788999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 375 ~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
..+.-+++++++++++|+++++.+|+|.++++.|+.+..+.++|+
T Consensus 258 ~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 258 TTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999998876553
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.65 E-value=8.7e-16 Score=150.39 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=211.0
Q ss_pred hhHHHHHHHhh--cCC-HHHHHHHHHHHHHHHHHHHHHHhcc------cccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 012208 139 SDIPILKAAEE--IMH-PASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAG 209 (468)
Q Consensus 139 ~~~~~~k~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~------~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~ 209 (468)
......|...+ +++ |..++.++...+.+.++.....+-. ++..+...+.+|++..++..+.+.|+.+.|++
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence 33445577766 544 8888888777777776665554422 12356677888999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 012208 210 RASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISR-ST 286 (468)
Q Consensus 210 ~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-~~~~G~llallaa~~~a~~~v~~r~~~~-~~ 286 (468)
..+++..++|++++++++ +.+|+.+...++.++....||.+.+..+. -+..|.+.++++.+..+...++.++..+ +.
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~ 190 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKG 190 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999 78999999999999999999999988765 5579999999999999999999999985 23
Q ss_pred CCCCchhHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012208 287 KKENFLPLLGYEICVVALLST-IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRD 365 (468)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~ 365 (468)
.+.|++.+..++.-.+.+.++ |+....+.... .......|... ....++..++. ..-...-+..+.+
T Consensus 191 ~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~sv~~-f~~Nls~f~~ig~ 258 (316)
T KOG1441|consen 191 ESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT----------FLILLLNSVLA-FLLNLSAFLVIGR 258 (316)
T ss_pred cccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh----------hHHHHHHHHHH-HHHHHHHHHHHcc
Confidence 467999999998888888887 66555443222 11111111111 22223333443 3334455689999
Q ss_pred CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCCC
Q 012208 366 VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSSP 420 (468)
Q Consensus 366 ~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~~ 420 (468)
++|...++...+.-++.++.++++|+++.++.+..|+++.++|++++.+.+.+++
T Consensus 259 tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 259 TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999998776543
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.55 E-value=1e-15 Score=141.02 Aligned_cols=268 Identities=17% Similarity=0.214 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH-HHhhcC-CHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILK-AAEEIM-HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEA 200 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k-~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~l~~gl~~~~~~~~~~ 200 (468)
+.++.+.=+..++-......+. ++..++ .|....|+.+++-+++..+++.+|++..+ .+++++++++.-.-++++..
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV 96 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVV 96 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEe
Confidence 3343333333333333333333 343433 48889999999999999988888775433 34457777888888899999
Q ss_pred HHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC---------CCCCcHHHHHHHHHHH
Q 012208 201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---------GSPPSVGDFLNFLSAI 270 (468)
Q Consensus 201 ~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~---------~~~~~~G~llallaa~ 270 (468)
.|.||++...+..+.......+.+++| |+|.|..+.++.|+++|++||++++.. +++...|+++.+++|-
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT 176 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT 176 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence 999999999999998777778888898 899999999999999999999998643 3456799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHH-H
Q 012208 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTG-I 349 (468)
Q Consensus 271 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg-v 349 (468)
+||+.++....+.++. |...++....+++++++..-..+ + ..+.....|. |....++. .
T Consensus 177 lYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~-~----~~~~~tl~w~------------~~i~~yl~f~ 236 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIF-E----RHHVSTLHWD------------SAIFLYLRFA 236 (336)
T ss_pred eeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhh-h----ccceeeEeeh------------HHHHHHHHHH
Confidence 9999999999999885 66777777777777776544222 1 1222222222 22233333 3
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
++.++-|.+....++..+++..++-..+.-.+++++ ..||-+.+|...+..+.+..|.+++.
T Consensus 237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 445666777778899999999999999999999998 67888899999999999999988774
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.55 E-value=6.3e-14 Score=116.35 Aligned_cols=129 Identities=18% Similarity=0.203 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc-------cccchhhHHHHHHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-------DVKTRNAGIELGLWVSLGYF 197 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~-------~~~~~~~~l~~gl~~~~~~~ 197 (468)
...++.+++++++|...++.|...++++|...+++|..+..++++.+....++ .++.+...++.|+..++++.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999888887776542 34556666777999999999
Q ss_pred HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 198 ~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
+||+|++...++.++.+..++|+++.++++ |+|||++..+++|++++..|+++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999 89999999999999999999998763
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.1e-12 Score=119.83 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H
Q 012208 153 PASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-M 228 (468)
Q Consensus 153 p~~~~~~R~~~a~l~ll~~~~~~~---~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~ 228 (468)
...++|++...-.++.=+++..++ .+...-+.+...++...+++...+.|++++|--...+-.+.-|+=+++++. +
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 444555555555554433332222 222233344555666777888899999999988888889999999999999 7
Q ss_pred hcCccchhHHHHHHHHHHhhhhhccCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q 012208 229 LGAIIPAHTWFGVLISALGVGMLECSG--------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC 300 (468)
Q Consensus 229 l~er~~~~~~~gi~l~l~Gv~li~~~~--------~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~ 300 (468)
.|.+.++++...++++++||.+....+ .+...|.++.+++-..-++....+.|+...+.. ....++++..+
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~Nl 211 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNL 211 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHH
Confidence 899999999999999999999987542 255799999999999999999999988876643 55777888888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHH
Q 012208 301 VVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPL 380 (468)
Q Consensus 301 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv 380 (468)
.+.+.+...+++.+...+....... .+..|+-+..+++. +++++++.+.-+...+|...+++..+.-.
T Consensus 212 wStL~Lg~g~lfTGElweF~yF~~R-----------hP~~~~~l~l~ai~-s~LGQ~fIF~tv~~FgPLtCSivTTTRKf 279 (337)
T KOG1580|consen 212 WSTLYLGAGLLFTGELWEFFYFVQR-----------HPYVFWDLTLLAIA-SCLGQWFIFKTVEEFGPLTCSIVTTTRKF 279 (337)
T ss_pred HHHHHhhhhheehhhHHHHHHHHHh-----------ccHHHHHHHHHHHH-HHhhhHHHHHHHHHhCCeeEEEEeehHHH
Confidence 8888877666665433222111100 01235555555654 68889898999999999999999999999
Q ss_pred HHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 381 WGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 381 ~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
|+++.+.++++++++..||+|.++++.+...-...+++.
T Consensus 280 FTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a 318 (337)
T KOG1580|consen 280 FTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKA 318 (337)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcC
Confidence 999999999999999999999999999988766655543
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.42 E-value=1.7e-12 Score=107.95 Aligned_cols=135 Identities=20% Similarity=0.322 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP 340 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (468)
..++++++++++++..++.|--.++ +||...++.+.++..+++..+....+........++. .
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k--------------~ 66 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPK--------------S 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcc--------------e
Confidence 4689999999999999999877776 5888888888888887777776666654444333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
|..++..| ++++++..+|++|++..+++++..+.-+.|+++++++++++||+++..+++|+++|++|.+++.
T Consensus 67 ~lflilSG-la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 67 WLFLILSG-LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred ehhhhHHH-HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 44454444 7789999999999999999999999999999999999999999999999999999999987754
No 25
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.9e-11 Score=114.83 Aligned_cols=281 Identities=14% Similarity=0.082 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHH--HHHHHHHHHHHHHHHHHh-----cccccchhhHHHHHHHHHHHHHH
Q 012208 127 IFLLNVITIVYASDIPILKAAEEIMH-PASFC--AVRFVMSAIPFLPFVFWA-----RDDVKTRNAGIELGLWVSLGYFV 198 (468)
Q Consensus 127 ~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~--~~R~~~a~l~ll~~~~~~-----~~~~~~~~~~l~~gl~~~~~~~~ 198 (468)
+...+.-.+.--.+.+..|.+....+ |..+. ..+++...+.+...-+.+ .-+++..+.+++..++.....+.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t 93 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT 93 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence 44444444444556777787655433 44444 478877666665443332 12355667788888888888888
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHHHHH
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHM 276 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a~~~ 276 (468)
-..+++|+++...+++....|+++++... ++|.|++...+.++....+|......++..+ ..|+.+++...+.-+.+.
T Consensus 94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~ 173 (314)
T KOG1444|consen 94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFV 173 (314)
T ss_pred ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998 8999999999999999999999888776544 458999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHH
Q 012208 277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL 356 (468)
Q Consensus 277 v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~ 356 (468)
+..|+..+.. +.+-..+++|..+++.+.+.....+.+...... ... -+|.....|..++..++++.++.|
T Consensus 174 v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~-~~~--------~~~~~~~~~~~~~lScv~gf~isy 243 (314)
T KOG1444|consen 174 VYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELDALS-LNF--------DNWSDSSVLVVMLLSCVMGFGISY 243 (314)
T ss_pred HHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchHHHH-hhc--------ccccchhHHHHHHHHHHHHHHHHH
Confidence 9999887653 356677888988888888877776665432100 000 013334468888888999989999
Q ss_pred HHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 357 WIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 357 ~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
.. .+..+..+++..+++...+...+.+...+++|++.++...+|..+-+.|.+++++.+.+
T Consensus 244 ~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~ 304 (314)
T KOG1444|consen 244 TS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFR 304 (314)
T ss_pred HH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhh
Confidence 77 58999999999999997777777777777788899999999999999999988876644
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.38 E-value=7.9e-11 Score=111.93 Aligned_cols=254 Identities=13% Similarity=0.041 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---ccc-------chhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHH
Q 012208 153 PASFCAVRFVMSAIPFLPFVFWARD---DVK-------TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVV 222 (468)
Q Consensus 153 p~~~~~~R~~~a~l~ll~~~~~~~~---~~~-------~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~ 222 (468)
|+.++.+++++-.++.....+..+. +.+ ..++..+.|++.+....+.+++++|++.+.-++..+.+++|+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI 124 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI 124 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence 8888888887776666554443221 111 123344667788888899999999999999999999999999
Q ss_pred HHHHHHhc-CccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHHHH
Q 012208 223 PLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTK--KENFLPLLGYE 298 (468)
Q Consensus 223 ~ll~~~l~-er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a~~~v~~r~~~~~~~--~~~~~~~~~~~ 298 (468)
.+++.++| |++++.-..-++++.+|+++.+..+.++ ..|.++.++++++-++.-.+.+.+.++.+ ..+|....+..
T Consensus 125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l 204 (349)
T KOG1443|consen 125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHL 204 (349)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHh
Confidence 99999777 9999999999999999999998776554 58999999999999988888888877654 34677777776
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCc-hhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh
Q 012208 299 ICVVALLSTIWVLVGGWFDSSQDFDQSPW-TWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL 377 (468)
Q Consensus 299 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l 377 (468)
.-...+.++|..+..+++......+.... ..... ......+...|..+.++.+.. +.-+.+++....++....
T Consensus 205 ~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~-----~rv~g~i~l~g~laF~l~~sE-flLl~~Ts~ltlSIaGI~ 278 (349)
T KOG1443|consen 205 QPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI-----LRVIGLISLGGLLAFLLEFSE-FLLLSRTSSLTLSIAGIV 278 (349)
T ss_pred hhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH-----HHHHHHHHHHHHHHHHHHHHH-HheeeeccceeeeHHHHH
Confidence 77777777777777766544322111100 00000 001122222222333333333 467889999999999999
Q ss_pred HHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 012208 378 EPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLV 412 (468)
Q Consensus 378 ~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~ 412 (468)
.-+-..+++.++.++.++...|.|..+...|+.+.
T Consensus 279 Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 279 KEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998887
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=7.8e-11 Score=112.08 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208 152 HPASFCAVRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (468)
Q Consensus 152 ~p~~~~~~R~~~a~l~ll~~~~~~~~---~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~- 227 (468)
++..+.+.+-+.+.++-..++.+++. .++.++.+...++.+.++..+.|.|++|++--.-.+-...=-+-+++++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L 129 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL 129 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence 57788888888888777666555432 23456667778888999999999999999976666656655555667776
Q ss_pred HhcCccchhHHHHHHHHHHhhhhhccCC----------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHH
Q 012208 228 MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297 (468)
Q Consensus 228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~----------~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~ 297 (468)
+.|.|++..+.+..+++-+||.+....+ ....+|+.+....-++-+..+..+.++.++. +++...++++
T Consensus 130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~ 208 (327)
T KOG1581|consen 130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG 208 (327)
T ss_pred HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence 6899999999999999999999876432 1336899999999999999999999998864 5789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh
Q 012208 298 EICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL 377 (468)
Q Consensus 298 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l 377 (468)
..+++.+......+..+.... .... --.+++.+.-++....++ .+++.+-++-+++.|+...+.++.+
T Consensus 209 vNLf~~i~~~~~li~qg~~~~--av~F---------~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~tt 276 (327)
T KOG1581|consen 209 VNLFSAILNGTYLILQGHLLP--AVSF---------IKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMTT 276 (327)
T ss_pred HHHHHHHHHHHhhhcCCCCch--HHHH---------HHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHHH
Confidence 999998887766433332211 1110 011234566666667765 5666666799999999999999999
Q ss_pred HHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 378 EPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 378 ~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
.-+++++++.+++|+++++.||+|..++++|+.+-.+.+.+
T Consensus 277 Rk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 277 RKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987776655
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.33 E-value=4.7e-09 Score=102.70 Aligned_cols=276 Identities=13% Similarity=0.149 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh-c---CCHHHHHHHHHHHHHHHHHHHHHHhccc-----cc-----------chhh
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWARDD-----VK-----------TRNA 184 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~-~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~-----------~~~~ 184 (468)
.-.+.+++..+.++...+..|+... + +.|....++--++-.++...+.++..+. .+ ...+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4456667777888888999998543 2 5677777777766666666555544211 00 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC---C-----
Q 012208 185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---G----- 255 (468)
Q Consensus 185 ~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~---~----- 255 (468)
..+-+++.++.+-++|.++.+++++.-++...+-.+.|+++.. ++++|.++.+|.++++.+.|+.++..+ +
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 2233556677777999999999999999999999999999999 899999999999999999999998722 1
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCCchhh
Q 012208 256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE-ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330 (468)
Q Consensus 256 ----~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (468)
.....|....+.+++.-+...++.+++.++.. .++.+...+ ..++.++.+...+..+. .... ....-..
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~-~~gff~G-- 248 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDG-EAIN-EYGFFYG-- 248 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccc-cccc-cCCcccc--
Confidence 12358999999999999999999999998753 334343333 33344444433333322 2221 1111111
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 012208 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSL 410 (468)
Q Consensus 331 ~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~ 410 (468)
|+ ...|..++..++.+- +...-+++.+-..=+....+..+++.+.++.++|.+||....+|..+++.++.
T Consensus 249 --~s---~~vw~vVl~~a~gGL-----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~ 318 (345)
T KOG2234|consen 249 --YS---SIVWLVVLLNAVGGL-----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIF 318 (345)
T ss_pred --cc---HHHHHHHHHHhccch-----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 11 112444444444333 33344566666666666778889999999999999999999999999999999
Q ss_pred HHHhcc
Q 012208 411 LVQMYR 416 (468)
Q Consensus 411 l~~~~~ 416 (468)
++...+
T Consensus 319 lY~~~P 324 (345)
T KOG2234|consen 319 LYSLYP 324 (345)
T ss_pred HhhcCC
Confidence 988443
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.33 E-value=2.4e-10 Score=109.59 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC-----
Q 012208 183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS----- 256 (468)
Q Consensus 183 ~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~----- 256 (468)
.+..+-+++..+.+.+.+.++++++++.-.++..+-.+++++++. ++|+|+++++|+++++.+.|++++..++.
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 344555788899999999999999999999999999999999999 89999999999999999999999753311
Q ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 012208 257 -------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFD 323 (468)
Q Consensus 257 -------------~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 323 (468)
....|.++.++++++-++..++.+++.|+.+ .+...........+.++.++.....+ .....+..
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g 175 (244)
T PF04142_consen 98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSD-GSAISESG 175 (244)
T ss_pred ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCC
Confidence 1248999999999999999999999999864 34343344444444444444332222 22211111
Q ss_pred CCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHH
Q 012208 324 QSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAA 403 (468)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~ 403 (468)
.. ..|+ ...+..++...++=.+....+|+.+...=+.......+++.++++++||.+++....+|++
T Consensus 176 ~f-----~G~~--------~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 176 FF-----HGYS--------WWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred ch-----hhcc--------hHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 10 0111 1112222333333344466789999998899999999999999999999999999999987
Q ss_pred HH
Q 012208 404 LV 405 (468)
Q Consensus 404 lI 405 (468)
++
T Consensus 243 ~V 244 (244)
T PF04142_consen 243 LV 244 (244)
T ss_pred cC
Confidence 63
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.31 E-value=1.5e-11 Score=104.77 Aligned_cols=125 Identities=22% Similarity=0.384 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHH
Q 012208 270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349 (468)
Q Consensus 270 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv 349 (468)
++||.+.+..|+..++ .|+....++++..+++ ..+......... ....+ ...+...++.++
T Consensus 1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~~ 61 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNLS--------------PRQWLWLLFLGL 61 (126)
T ss_pred ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCCC--------------hhhhhhhhHhhc
Confidence 4688999999999887 4889999999999987 555555544322 11111 123666788888
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
+++++++.++++++++.+++.++++.+++|+++.++++++++|++++.+++|++++++|+++..
T Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999998865
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.30 E-value=5.4e-10 Score=104.92 Aligned_cols=225 Identities=20% Similarity=0.275 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC---------
Q 012208 186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--------- 255 (468)
Q Consensus 186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~--------- 255 (468)
+.-+++-..+..++|.++.+++++.-+++-....+|+.+++. +++++++.++|+|++....|++.+-..+
T Consensus 90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~ 169 (372)
T KOG3912|consen 90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT 169 (372)
T ss_pred cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc
Confidence 345788888999999999999999999999999999999999 9999999999999999999999875431
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhc
Q 012208 256 --SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333 (468)
Q Consensus 256 --~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (468)
+....|+++.+++-+.-|+..++-+|..++++ ++|+....|+.+++.++...+.......+..++.+..+ .....
T Consensus 170 d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~--~g~~e 246 (372)
T KOG3912|consen 170 DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP--RGVLE 246 (372)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCC--Ccchh
Confidence 23368999999999999999999999998864 79999999999998666554444433222221121111 01111
Q ss_pred cccchhh---HHHHHHHHHHHHHHHHHHHHH----HhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHH
Q 012208 334 DWMVTFP---WVPALYTGIFSTGICLWIEIA----AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406 (468)
Q Consensus 334 ~~~~~~~---~~~ll~lgv~~~~~~~~l~~~----al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi 406 (468)
||.+... =...+++++.+..++-.+++. --+..+++.-.+.-.+...+--+++..+..|.+...|+.|.++.+
T Consensus 247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi 326 (372)
T KOG3912|consen 247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI 326 (372)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2211100 001233444444443333332 245567777778888888888888888899999999999999999
Q ss_pred HHHHHHH
Q 012208 407 GGSLLVQ 413 (468)
Q Consensus 407 ~Gv~l~~ 413 (468)
.|+++++
T Consensus 327 ~Gi~lY~ 333 (372)
T KOG3912|consen 327 MGIILYN 333 (372)
T ss_pred HHHHHHH
Confidence 9999876
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.25 E-value=4.8e-11 Score=101.66 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=97.3
Q ss_pred HHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc------cccchhhHHHHHHH-HHHHHHHHHHHHhcCc
Q 012208 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLW-VSLGYFVEALGLLTSD 207 (468)
Q Consensus 135 ~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~------~~~~~~~~l~~gl~-~~~~~~~~~~Al~~~~ 207 (468)
++||...++.|...++++|....++|+..+.+ ++++....++ +.+.+...+..|.+ ...++.++++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 46999999999999899999999999999997 4444433221 12223344555665 5788999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 208 AGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 208 ~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
++.++++..+.|+++.++++ ++||++++.+++|+++++.|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7999999999999999999999874
No 33
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.08 E-value=6.3e-10 Score=99.35 Aligned_cols=214 Identities=12% Similarity=0.050 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---CCcHHHHH
Q 012208 189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFL 264 (468)
Q Consensus 189 gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---~~~~G~ll 264 (468)
.+++...++.|..|+..+++++++.+......|+.++++ .+|+|+...++++.++++.|+++++..++ +...|+.+
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~ 139 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIAC 139 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHH
Confidence 445667889999999999999999999999999999999 79999999999999999999999996654 56799999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHHHHHHHH-HHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208 265 NFLSAIFFGIHMLRTERISRSTKKENFLP-LLGYEICVVALLSTIW-VLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV 342 (468)
Q Consensus 265 allaa~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (468)
+..+++..|+|.+.-|+......-=+.-. +....++=-.+...|. .+.....+.++.....+ |.
T Consensus 140 AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~P--------------WG 205 (290)
T KOG4314|consen 140 AVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAP--------------WG 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCC--------------ch
Confidence 99999999999999998876532001111 1111111111112221 12222222222222222 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
.+...+.+.....+. .+.++....|...++.+........+++.++-+-..+...+.|..+|++|.+++.....
T Consensus 206 ~l~G~A~L~lAFN~~-iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFL-INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred hhhhHHHHHHHHhhh-eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 676666666555554 47899999999999999999999999998766667888889999999999888776443
No 34
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.08 E-value=4.2e-08 Score=94.06 Aligned_cols=235 Identities=13% Similarity=0.106 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHh-hhhHHHHHHHH
Q 012208 152 HPASFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFD 226 (468)
Q Consensus 152 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~----~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~-~~~Pl~~~ll~ 226 (468)
+|.+.++.-..-+.++-+......++.. ......++.|+++.+++.+.+.|+++..++.+.+|. .++-+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 3444444444444444444444444433 334445677899999999999999999999999996 67777788888
Q ss_pred H-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCch
Q 012208 227 G-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFL 292 (468)
Q Consensus 227 ~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~ 292 (468)
. +++|--+..+ .+++++.++|+++.+..+. ....|....+++.++|..|.+..|.. +.+++
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----~~~~~ 165 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----HVSGW 165 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCChh
Confidence 8 7999777654 4488889999998875432 12468999999999999999986652 14666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 012208 293 PLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETA 372 (468)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s 372 (468)
....-+.+...+..+.+.... ..... ... .|..+ ++.+.-.++..++..+.+..+.+.+=
T Consensus 166 ~~~lPqaiGm~i~a~i~~~~~--~~~~~--~k~--------------~~~ni--l~G~~w~ignl~~~is~~~~G~a~af 225 (269)
T PF06800_consen 166 SAFLPQAIGMLIGAFIFNLFS--KKPFF--EKK--------------SWKNI--LTGLIWGIGNLFYLISAQKNGVATAF 225 (269)
T ss_pred HhHHHHHHHHHHHHHHHhhcc--ccccc--ccc--------------hHHhh--HHHHHHHHHHHHHHHhHHhccchhhh
Confidence 666655444444333333322 11111 111 12332 33444567888889999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhCCccchh----hHHHHHHHHHHHHH
Q 012208 373 IIYGLEPLWGAGFAWFLLGERWSTA----GWIGAALVLGGSLL 411 (468)
Q Consensus 373 ~~~~l~pv~a~l~~~~llgE~~t~~----~~iG~~lIi~Gv~l 411 (468)
.+.-+.++++.+.+.+++||+=+.. .++|.++|++|.++
T Consensus 226 ~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 226 TLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999987765 45688888887654
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.06 E-value=2.2e-09 Score=90.63 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHhccc--------ccchhhHHHHHHHHH-HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208 158 AVRFVMSAIPFLPFVFWARDD--------VKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (468)
Q Consensus 158 ~~R~~~a~l~ll~~~~~~~~~--------~~~~~~~l~~gl~~~-~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~- 227 (468)
.+|++.+.+++..+...+++. .+.+.+.+..|+++. .++.++++|+++.| +.++++.+++|+++.+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 578888888888777664322 122334455577665 88999999999999 5889999999999999999
Q ss_pred HhcCccchhHHHHHHHHHHhhhhhccCCC
Q 012208 228 MLGAIIPAHTWFGVLISALGVGMLECSGS 256 (468)
Q Consensus 228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~~ 256 (468)
++|||+++++++++++++.|++++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999999999999999987653
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.04 E-value=1.5e-08 Score=92.33 Aligned_cols=266 Identities=10% Similarity=0.049 Sum_probs=197.0
Q ss_pred hHHHHHHHhh--cCC-HHHHHHHHHHHHHHHHHHHHHHh--cccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 012208 140 DIPILKAAEE--IMH-PASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI 214 (468)
Q Consensus 140 ~~~~~k~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~--~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii 214 (468)
+.+..|+..+ ++. -+.+++++.+...+.++++-+.+ +-+....+.+.+..++.....+..--+++|+++..-++.
T Consensus 21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiF 100 (309)
T COG5070 21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIF 100 (309)
T ss_pred HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHh
Confidence 4555676544 233 45667777777776666554443 223444556677788888888888889999999999999
Q ss_pred hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--------CCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012208 215 SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERISRS 285 (468)
Q Consensus 215 ~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~--------~~~~G~llallaa~~~a~~~v~~r~~~~~ 285 (468)
..+..++++.... ++|.|++-.+....++.+..-+.-..++. ..+.|++++..-.+.-+.+....|+..+-
T Consensus 101 KNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~l 180 (309)
T COG5070 101 KNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKL 180 (309)
T ss_pred ccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcc
Confidence 9999999998888 89999999999988777776666555543 45789999999999999999998877654
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012208 286 TKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRD 365 (468)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~ 365 (468)
.. ..-...++|..+++.++++.+....+.+....-... .+.....++.+.|+++.+++|.- .+.++.
T Consensus 181 tN-f~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann-----------l~~d~l~am~ISgl~svgiSy~s-aWcvrV 247 (309)
T COG5070 181 TN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN-----------LSVDSLMAMFISGLCSVGISYCS-AWCVRV 247 (309)
T ss_pred cc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC-----------CChHHHHHHHHHHHHHhhhhhcc-ceeEee
Confidence 32 234566788888888877777666554322211111 11223556677788877778755 689999
Q ss_pred CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 366 VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 366 ~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
.+.+..+++..++-.-..+-|.++|+|+.+...+....+-..+.+++...+.+
T Consensus 248 tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 248 TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred hhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888887777777665443
No 37
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.4e-10 Score=108.57 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcc------------cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhH
Q 012208 152 HPASFCAVRFVMSAIPFLPFVFWARD------------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV 219 (468)
Q Consensus 152 ~p~~~~~~R~~~a~l~ll~~~~~~~~------------~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~P 219 (468)
.|..+++.+.++...+...+-...++ +.+..+..+.+.+...++..+-++.++|++++.-.+--++.-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 48888888888877766655433211 111223344556666667778888999999998888889999
Q ss_pred HHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhH
Q 012208 220 IVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPL 294 (468)
Q Consensus 220 l~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~ 294 (468)
+|++++.+ ++|++-+.....+.++++.|-.+=+.-+ .....|.+++.++.++-|+..+..|+.....+ .....+
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~-~~iw~l 218 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVG-DCIWRL 218 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheeccccc-Ceehhh
Confidence 99999999 8999999998888888888877644322 23468999999999999999999998765543 245777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 012208 295 LGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII 374 (468)
Q Consensus 295 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~ 374 (468)
++|..+.+.++.+|.+.+.+........+..+ ...+|..+...|+++..++|.- .+=+|.++|..-.+-
T Consensus 219 t~ynnv~a~lLflpll~lnge~~~v~~~~~l~----------a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnIS 287 (347)
T KOG1442|consen 219 TAYNNVNALLLFLPLLILNGEFQAVVGFPHLP----------AIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNIS 287 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHcCcccch----------HHHHHHHHHHHHHHHHHhhhee-eEEEEecccceeeec
Confidence 88999999999999888876555444332221 1235888888888888888865 466888899888877
Q ss_pred hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 375 ~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
..-.-....+++..+++|.-+..-|-|-.+|++|...+.+.++++
T Consensus 288 gTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e 332 (347)
T KOG1442|consen 288 GTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE 332 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence 777888888899999999999999999999999999998876543
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.02 E-value=6.7e-09 Score=92.21 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcccc
Q 012208 261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM 336 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (468)
|.++++++.++.+++.++.|+..++. .+.++..+..+....+.++.++.....+............. .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~-----~~~~ 75 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFG-----EELS 75 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-----hhhc
Confidence 67899999999999999999998874 56799999999999999999988887765432221110000 0000
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 337 -VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 337 -~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
....+..++..|+++.+ -....+..+++.+|...++...+..+..++++++++||++++.+++|.++.++|++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~-~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 76 SDPNFIFLLILSGLLAFL-YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 11235556666666544 444557899999999999999999999999999999999999999999999999987653
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.01 E-value=1.3e-08 Score=100.00 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208 262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW 341 (468)
Q Consensus 262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (468)
.++.++++++++...+..|+..++. ++ ...+......++..|+..........+..+. .|
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~ 62 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPA---------------TF 62 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcch---------------hh
Confidence 4688999999999999999887662 22 2344455555555555443211111111110 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
+..+..+.+.....+.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.+++++|+++....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34455566677888889999999999999999999999999999999999999999999999999999887653
No 40
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.95 E-value=2.3e-08 Score=96.78 Aligned_cols=127 Identities=23% Similarity=0.280 Sum_probs=103.0
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHhccccc----chhhHHHHHHHH-HHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARDDVK----TRNAGIELGLWV-SLG 195 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p--~~~~~~R~~~a~l~ll~~~~~~~~~~~----~~~~~l~~gl~~-~~~ 195 (468)
...|.++.++++++|+...+..|...++.++ .....+++.++.++++++....++... .+...+..+++. .++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999998876774 455557888888888877665433221 122234445553 678
Q ss_pred HHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhh
Q 012208 196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG 249 (468)
Q Consensus 196 ~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~ 249 (468)
+.++++++++.+++.++++.++.|+++.++++ ++||+++..+++|+++.+.|+.
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999 8999999999999999999873
No 41
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.93 E-value=1.4e-06 Score=86.87 Aligned_cols=283 Identities=13% Similarity=-0.010 Sum_probs=169.1
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHH-HHHHHHHHHH---HHHHH-------hcccccchhhHHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAV-RFVMSAIPFL---PFVFW-------ARDDVKTRNAGIELGL 190 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~-R~~~a~l~ll---~~~~~-------~~~~~~~~~~~l~~gl 190 (468)
+...|++..+++.++||+.++..|... . -.++.... -..+..+++- ..+.. +..+.......++.|+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k-~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVK-K-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccC-C-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 456799999999999999999999832 2 22222211 1111111111 11111 1123344555677789
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCcc-------chhHHHHHHHHHHhhhhhcc----CC--
Q 012208 191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAII-------PAHTWFGVLISALGVGMLEC----SG-- 255 (468)
Q Consensus 191 ~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~-------~~~~~~gi~l~l~Gv~li~~----~~-- 255 (468)
+..+++.+++.++++...+.+..| ..+.-++..++.. +++|=. ...-.+|+++.++|+++... .+
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999888 4788888888887 555422 23467899999999999875 21
Q ss_pred --------CCCcHHHHHHHHHHHHHHHHHH-------HHHHHhhccCCCCchhHHHHHHH---HHHHHHHHH-HHHh-hc
Q 012208 256 --------SPPSVGDFLNFLSAIFFGIHML-------RTERISRSTKKENFLPLLGYEIC---VVALLSTIW-VLVG-GW 315 (468)
Q Consensus 256 --------~~~~~G~llallaa~~~a~~~v-------~~r~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~l~~-~~ 315 (468)
.....|.++++++++.+++|.. ..+.... . +.++.....-+.. +++++.-+. .... ..
T Consensus 162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k 239 (345)
T PRK13499 162 MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-L-GVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK 239 (345)
T ss_pred cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-c-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1236899999999999999993 3222111 1 2344433333333 333322221 1111 01
Q ss_pred CCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH----HHhhhHHHHHHHHHHHHhC
Q 012208 316 FDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETA----IIYGLEPLWGAGFAWFLLG 391 (468)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s----~~~~l~pv~a~l~~~~llg 391 (468)
..............+..+ + =..+..++.+.-.+++.+|..+-+..+..... +.+.+..+++.+.+. +++
T Consensus 240 ~~~~~~~~~~~~~~~~~~-----~-n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk 312 (345)
T PRK13499 240 NKDLSLKADFSLAKPLLI-----T-NVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK 312 (345)
T ss_pred CCCcccchhccccchhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence 111100000000000000 0 01122334444566777888888777554333 333777799999998 599
Q ss_pred Cccc------hhhHHHHHHHHHHHHHHHhc
Q 012208 392 ERWS------TAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 392 E~~t------~~~~iG~~lIi~Gv~l~~~~ 415 (468)
|.=+ ...++|.+++++|..++...
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9766 55689999999999887654
No 42
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.90 E-value=4.1e-08 Score=95.07 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCCCchhhhhccccch
Q 012208 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS-QDFDQSPWTWTMLWDWMVT 338 (468)
Q Consensus 260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 338 (468)
.|.++.++++++|+...+..|.. .+ .++..+.+++++++.++..++.......... ........ .
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~-------- 67 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQK--R-------- 67 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCccc--c--------
Confidence 48899999999999999999974 33 6899999999999887766554443211000 00000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
+.+..+...|++ .++.+.+++.++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 68 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 68 PLILSLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 002233334443 678889999999999999999999999999999999999999999999999999999987754
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.87 E-value=4.1e-08 Score=97.24 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=108.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccc
Q 012208 258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV 337 (468)
Q Consensus 258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (468)
...|.+++++++++|+...+..|.. .+ .+|..+.+++..++.++..++............. ...
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~----------- 69 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQT----------- 69 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcC-----------
Confidence 3579999999999999999999764 33 5889999999999987776655433210000000 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
...+ .....+.++.++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|+++.++|++++..
T Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 70 PQKI-FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0012 233466777788899999999999999999999999999999999999999999999999999999988764
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.78 E-value=8e-08 Score=94.88 Aligned_cols=262 Identities=13% Similarity=0.109 Sum_probs=150.0
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHH-HHHHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLW-VSLGYFVE 199 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~l~~gl~-~~~~~~~~ 199 (468)
+...|+++.++++++-+....+.|....+.+. .-.|- .++.++ .+...++.|+. +.++..+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~-------------~~~~~~~l~~~~W~~G~~~~~~g~~~~ 67 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRA-------------GSGGRSYLRRPLWWIGLLLMVLGEILN 67 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccc-------------cchhhHHHhhHHHHHHHHHHhcchHHH
Confidence 45678999999999999988888875432211 00000 001111 12223334443 56788899
Q ss_pred HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC--CCC--Cc----------HHH--
Q 012208 200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS--GSP--PS----------VGD-- 262 (468)
Q Consensus 200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~--~~~--~~----------~G~-- 262 (468)
+.|+.+.|++..+++..+.-++..+++. ++|||+++.++.|+++++.|+.++..- ... .. .+.
T Consensus 68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~ 147 (300)
T PF05653_consen 68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLV 147 (300)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceeh
Confidence 9999999999999999999999999998 899999999999999999999886532 111 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208 263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTI---WVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF 339 (468)
Q Consensus 263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (468)
.+.+...+...+.....+|..++ +.+.....-.++++.-.+. +....... ....... .++.
T Consensus 148 y~~~~~~~~~~L~~~~~~r~g~~----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~--~~g~~~f----------~~~~ 211 (300)
T PF05653_consen 148 YFILVLVLILILIFFIKPRYGRR----NILVYISICSLIGSFTVLSAKAISILIKLT--FSGDNQF----------TYPL 211 (300)
T ss_pred hHHHHHHHHHHHHHhhcchhccc----ceEEEEEEeccccchhhhHHHHHHHHHHHH--hcCchhh----------hhhH
Confidence 11111222222222223333222 2221111111111110000 00000000 0000000 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCc--cchh----hHHHHHHHHHHHHHH
Q 012208 340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGER--WSTA----GWIGAALVLGGSLLV 412 (468)
Q Consensus 340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~--~t~~----~~iG~~lIi~Gv~l~ 412 (468)
.|..++. .+++.+.+....++|+++.+++.+.++.+ .-...+++-+.++++|. .++. ...|..+++.|+++.
T Consensus 212 ~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 212 TYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 3444433 34455677778889999999988877766 44556667788888875 4443 456888899998887
Q ss_pred Hhcc
Q 012208 413 QMYR 416 (468)
Q Consensus 413 ~~~~ 416 (468)
...+
T Consensus 291 ~~~~ 294 (300)
T PF05653_consen 291 SSSK 294 (300)
T ss_pred eccC
Confidence 6544
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.78 E-value=3.1e-07 Score=79.07 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF 339 (468)
Q Consensus 260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (468)
.|.++.+++.++-+...++.|+-.++.+..+... . .+... .. ...
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~-----~~~~~-~~-~~~------------------------- 46 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D-----FIAAL-LA-FGL------------------------- 46 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H-----HHHHH-HH-Hhc-------------------------
Confidence 4788899999999999999998877653222111 0 00000 00 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHH--HhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWF--LLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~--llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
....+++|+++.++++.+|.+++++.+++.+..+....+++..+.++. ++||++++.+++|.++|++|++++...+
T Consensus 47 -p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 47 -ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 112467899999999999999999999999999999998888777775 8999999999999999999999987543
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.78 E-value=2.1e-07 Score=94.28 Aligned_cols=139 Identities=17% Similarity=0.104 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP 340 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (468)
-...+++.-++|+.+.++.|...+.. +++..+.++++.+++++.+++..........+.. .| +.
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~-----~~---------~~ 77 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL-----SV---------SI 77 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-----hH---------HH
Confidence 35566777889999999999888653 7999999999999998888876654321111111 11 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH------hCCccchhhHHHHHHHHHHHHHHHh
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL------LGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~l------lgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
|..+..+|+++ .+.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++-++|+.++..
T Consensus 78 ~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 78 LSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 55666677776 4566678899999999999999999999999999999 6999999999999999999988775
Q ss_pred cc
Q 012208 415 YR 416 (468)
Q Consensus 415 ~~ 416 (468)
.+
T Consensus 157 ~~ 158 (358)
T PLN00411 157 YH 158 (358)
T ss_pred cc
Confidence 43
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.72 E-value=3.7e-07 Score=90.32 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccccc-c---hhhHHHHHHHH-HHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-T---RNAGIELGLWV-SLGYFV 198 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~---~~~~l~~gl~~-~~~~~~ 198 (468)
..|.++.++++++|+...+..|...++.++...... ..++.++++++......... . +...+..|++. .+++.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988777788776544 45556666665554332111 1 11223445553 567889
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
+++++++.+++.++++..+.|+++.++++ +++|+++..+++|.++.+.|+++...
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 89999999999999999999988753
No 48
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.64 E-value=6.5e-07 Score=88.61 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc---c--cchhhHHHHHHHHHHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD---V--KTRNAGIELGLWVSLGYFV 198 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~l~~gl~~~~~~~~ 198 (468)
..|.+++++++++|+...+..|...++.++....+ ..+.+.+.+........ . ..+...+..|+..++++.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999998776677765432 22233333322222211 1 1122233345555678999
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
+++++++++++.++.+.++.|++..++++ +++|+++..+++|.++++.|+++...
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999 89999999999999999999987654
No 49
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.57 E-value=5.7e-07 Score=75.82 Aligned_cols=76 Identities=25% Similarity=0.532 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
|...+..|+++...++.++++++++.++ .++++..+.|+++.++++++++|+++..+++|.+++++|++++.+.+.
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4455666777777899999999999995 888999999999999999999999999999999999999999987654
No 50
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.52 E-value=4e-06 Score=83.17 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208 262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW 341 (468)
Q Consensus 262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (468)
.+++++++++|+...+..|...++ ++|..+.++++.++++..+++.. .+. .. +
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~~-------~~~---~~--------------~ 58 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFVA-------RPK---VP--------------L 58 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhc-------CCC---Cc--------------h
Confidence 466889999999999999987654 68999999999887765543321 010 01 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 342 VPALYTGIFSTGICLWIEIAAMRD-VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 342 ~~ll~lgv~~~~~~~~l~~~al~~-~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
..++..|++.....+.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+....
T Consensus 59 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 59 NLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 223344554445555666788887 58899999999999999999999999999999999999999999888743
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.51 E-value=3.5e-06 Score=83.26 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208 263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV 342 (468)
Q Consensus 263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (468)
+..++..+.|+...+..|...++ .+|..+.++++.+++++.+++...... ..+ .. +.|.
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~~---~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~--~~--------------~~~~ 69 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVES---WPPLMMAGVRFLIAGILLLAFLLLRGH--PLP--TL--------------RQWL 69 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cH--------------HHHH
Confidence 44566788999999999977664 689999999999999887776544221 111 00 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 343 PALYTGIFSTGICLWIEIAAM-RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 343 ~ll~lgv~~~~~~~~l~~~al-~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
..+..|.+.....+.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|.++.++|+.+....
T Consensus 70 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 70 NAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 556677776666777888888 9999999999999999999999985 79999999999999999999887643
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.51 E-value=1.7e-06 Score=81.91 Aligned_cols=185 Identities=14% Similarity=0.038 Sum_probs=108.7
Q ss_pred HHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh--------------------hccCC--------CCCcHHH
Q 012208 212 SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM--------------------LECSG--------SPPSVGD 262 (468)
Q Consensus 212 ~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l--------------------i~~~~--------~~~~~G~ 262 (468)
....+..++++++..+ +.++|++..++++.++...|++. ...++ +....|.
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~ 87 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGL 87 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHH
Confidence 3445566666666666 56677666677777776666653 22111 1234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208 263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV 342 (468)
Q Consensus 263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (468)
...+.+.++-+...++.++..++.+. ..........+.+.+.... .............+.. .. +.
T Consensus 88 ~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~------------~~ 152 (222)
T TIGR00803 88 SAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFF-IG------------YP 152 (222)
T ss_pred HHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcc-cC------------Cc
Confidence 66777777777788888877665321 1111111111111111111 1111111111111100 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208 343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL 411 (468)
Q Consensus 343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l 411 (468)
...+..++...++..+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+.+
T Consensus 153 ~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 153 TAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 111222233455666778899999999999999999999999999999999999999999999988654
No 53
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.48 E-value=1.7e-05 Score=74.80 Aligned_cols=256 Identities=11% Similarity=0.011 Sum_probs=169.0
Q ss_pred cCCH--HHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHH
Q 012208 150 IMHP--ASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLF 225 (468)
Q Consensus 150 ~~~p--~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll 225 (468)
++.| +.++++++++=..+.++.+.. .+++.-.++.+..++.+....+.+..-++.|+.--.-.+...+--+=+.+.
T Consensus 70 gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmig 149 (367)
T KOG1582|consen 70 GFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIG 149 (367)
T ss_pred cCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhhe
Confidence 4553 455666655433333222211 123334456666666666556677777777777444334444333334455
Q ss_pred HH-HhcCccchhHHHHHHHHHHhhhhhccCCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q 012208 226 DG-MLGAIIPAHTWFGVLISALGVGMLECSGS-----PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEI 299 (468)
Q Consensus 226 ~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-----~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~ 299 (468)
+. +-+.|.++.+.++..+..+|+++....++ -+..|+++.-.|-++-|.-.-++++..+..+ .+...+.++..
T Consensus 150 gifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-~ss~EmvfySy 228 (367)
T KOG1582|consen 150 GIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-ASSSEMVFYSY 228 (367)
T ss_pred eeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-CCcceEEEeee
Confidence 55 45789999999999999999999876553 3468998888888888877777888777654 35566777777
Q ss_pred HHHHHHHHHHHHHhhcCC-CCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhH
Q 012208 300 CVVALLSTIWVLVGGWFD-SSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLE 378 (468)
Q Consensus 300 ~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~ 378 (468)
.++.+..++.....+... ........++ +.+...+..+. .+.++......-++..+|..++.+....
T Consensus 229 ~iG~vflf~~mvlTge~f~a~~fcaehp~-----------~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 229 GIGFVFLFAPMVLTGELFSAWTFCAEHPV-----------RTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred cccHHHHHHHHHhcccchhhhHHHHhCcH-----------hHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 777777666655544221 1111111111 11233333333 3455565556678889999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 379 PLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 379 pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
--+++++++++|..++|....-|..+|+.|+++-.+.++.
T Consensus 297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999988877643
No 54
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.40 E-value=6.6e-06 Score=69.07 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 191 ~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
+.+.+++++.+++++.|.+.+..+..+.++++.++++ ++|||++..+++|+++++.|++++..
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999999 89999999999999999999998764
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.38 E-value=5e-06 Score=79.56 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=114.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccc
Q 012208 258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV 337 (468)
Q Consensus 258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (468)
...|+++++.+-+.|+.-..+.|-+.. .++..+..++.+.+.++.+..........+..+....
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~------------ 68 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQ------------ 68 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhC------------
Confidence 457999999999999999998887654 4778899999999988877766665543333222111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
++.+......++. ......+|.+|..+.....+|...+++|++.+++|.++++|+++..|++..++..+|+....+...
T Consensus 69 p~~~~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 69 PKTLLMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred cHHHHHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 1224444444443 467899999999999999999999999999999999999999999999999999999998887665
Q ss_pred C
Q 012208 418 S 418 (468)
Q Consensus 418 ~ 418 (468)
+
T Consensus 148 ~ 148 (293)
T COG2962 148 S 148 (293)
T ss_pred C
Confidence 4
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.38 E-value=9.3e-06 Score=68.14 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 346 YTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
..++++.++++.++..++++.+.+.+-.+.++.++++.+++++++||++++.+++|.++|++|++++..
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344567788999999999999999999999999999999999999999999999999999999987653
No 57
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.36 E-value=4.2e-06 Score=83.06 Aligned_cols=130 Identities=17% Similarity=0.099 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHhcccc--c----c----hh--hHH---
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARDDV--K----T----RN--AGI--- 186 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~--~----~----~~--~~l--- 186 (468)
..|.++.++++++|+...+..|...+ +.+|..++++....+.++++++........ . . .. ...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 56999999999999999999998776 789999999999999888888765432111 0 0 00 011
Q ss_pred -HHHH-HHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 187 -ELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 187 -~~gl-~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
..+. +....+.+++++++++++..++++..+.|+++.++++ +++|+++..+++|.+++++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1122234666799999999999999999999999998 89999999999999999999988654
No 58
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.32 E-value=2.5e-06 Score=80.50 Aligned_cols=249 Identities=14% Similarity=0.083 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHhc-CchhhHHHHhhhhHHHHHHHHH-Hh
Q 012208 154 ASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGLLT-SDAGRASFISLFTVIVVPLFDG-ML 229 (468)
Q Consensus 154 ~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~-~~~~~a~ii~~~~Pl~~~ll~~-~l 229 (468)
-.++|.++++.+.--+++.-. ..+++-.++.+...-...+..+.+-++|+++ .|...=.++-.-.++.++++++ ++
T Consensus 34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~ 113 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILL 113 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhc
Confidence 456677776655544443311 0122223444444444444556677778875 4444444556778899999999 78
Q ss_pred cCccchhHHHHHHHHHHhhhhhccCCC------------C--------CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012208 230 GAIIPAHTWFGVLISALGVGMLECSGS------------P--------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289 (468)
Q Consensus 230 ~er~~~~~~~gi~l~l~Gv~li~~~~~------------~--------~~~G~llallaa~~~a~~~v~~r~~~~~~~~~ 289 (468)
|.|.+.+|+.++++..+|+++.....+ + ...|+.+...+-+.-|.-.++.+..-+++++
T Consensus 114 ~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK- 192 (330)
T KOG1583|consen 114 GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK- 192 (330)
T ss_pred cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999999999999999998753211 0 1357766666666666666666666666554
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH-hhcC-----CCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012208 290 NFLPLLGYEICVVALLSTIWVLV-GGWF-----DSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAM 363 (468)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~l~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al 363 (468)
++-...+|.-.+..+..+...-- ..++ .+....+... ..-|..|..++.. ...+|.| .+++
T Consensus 193 h~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g--------~~vP~~~~yLl~n----~L~Qy~C-ikgV 259 (330)
T KOG1583|consen 193 HWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLG--------FKVPSMWVYLLFN----VLTQYFC-IKGV 259 (330)
T ss_pred ChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccC--------ccccHHHHHHHHH----HHHHHHH-HHhh
Confidence 66777777666655433321100 0000 0000011111 0012234444332 2334544 3443
Q ss_pred ----ccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 364 ----RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 364 ----~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
...++..++++..+.-.++.+++.+.|+.+++++.|+|.+++..|.++.....
T Consensus 260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888899999999999999999999999999999999998876543
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.29 E-value=6.7e-06 Score=81.18 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHH---HHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFV---MSAIPFLPFVFWARDDV--KTRNAGIELGLWVSLGYFV 198 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~---~a~l~ll~~~~~~~~~~--~~~~~~l~~gl~~~~~~~~ 198 (468)
.+|+++.+++.+.++...+..|.. +.+|...++.... ++.+++..... +.++. +.....++.|++.++++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Gi~~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKPLKKYAILLNILPGLMWGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999976 3788888555544 33333332221 11111 1122234468888889999
Q ss_pred HHHHHh-cCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHH----HHHHHHHHhhhhhc
Q 012208 199 EALGLL-TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTW----FGVLISALGVGMLE 252 (468)
Q Consensus 199 ~~~Al~-~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~----~gi~l~l~Gv~li~ 252 (468)
|+.+.+ +.+++.+.++....|+...+++. ++||+.+++++ +|.++.+.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999999 79999999999 99999999998875
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.25 E-value=2.6e-05 Score=67.20 Aligned_cols=119 Identities=15% Similarity=0.011 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHH-HHHHHHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGL-WVSLGYFVEALGL 203 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl-~~~~~~~~~~~Al 203 (468)
.++++++++.++-+..-++.|...++.+........ ...+.. . .....++..|+ +.++++.++.+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~~---~-------~~p~~~i~lgl~~~~la~~~w~~aL 69 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALLA---F-------GLALRAVLLGLAGYALSMLCWLKAL 69 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHHH---H-------hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888999999877665543322211 000000 0 01111344454 4577899999999
Q ss_pred hcCchhhHHHHhhhhHHHHHHHHH---HhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208 204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECSG 255 (468)
Q Consensus 204 ~~~~~~~a~ii~~~~Pl~~~ll~~---~l~er~~~~~~~gi~l~l~Gv~li~~~~ 255 (468)
++.|++.+..+.+..+.++.+.++ ++||+++..+++|++++++|++++...+
T Consensus 70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999888888776 5899999999999999999999987654
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.22 E-value=4.9e-05 Score=74.10 Aligned_cols=130 Identities=16% Similarity=0.281 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHH-HHHHHHHHHHHHHHHHhcc---cccchhhHHHHHHHHH-HHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVS-LGYFV 198 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~-~R~~~a~l~ll~~~~~~~~---~~~~~~~~l~~gl~~~-~~~~~ 198 (468)
..|.++.+++++.|+...+..|... ..++..... +.+........+....... ....+......|++.. .++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999765 566666666 4433222222222222121 1222334455566655 68999
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
++++++..+++.++.+..+.|++..++++ +++|+++..+++|+++.+.|+.++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999888 789999999999999999999987644
No 62
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.14 E-value=6.6e-05 Score=76.15 Aligned_cols=129 Identities=10% Similarity=0.124 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHHHHHHHhccc--c----------cch--
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWARDD--V----------KTR-- 182 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~-------~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~----------~~~-- 182 (468)
..|.+++++++++|+...+..|...++ .++..+..+-..++.++++|+....... . ...
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 569999999999999999999986653 5677677767778888888776532110 0 010
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 183 NAGIELGLWVSLGYF----VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 183 ~~~l~~gl~~~~~~~----~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
...+...+..++.++ +.|++++++++...++...+.|+++.++++ +++|+++..+++|.+++++|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 111111222233333 444699999999999999999999999999 8999999999999999999998754
No 63
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.13 E-value=9.4e-05 Score=65.39 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------cc
Q 012208 126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWARDDV-----------------KT 181 (468)
Q Consensus 126 g~ll~lla~~~wg~~~~~~k~~~~-------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----------------~~ 181 (468)
|.++++.+.++.+...+..|...+ ..++.++.++-...+.+++++.....++.. ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 467888999999999999986432 578999999999999988888766532211 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (468)
Q Consensus 182 ~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l 250 (468)
....+..|++.++.+...+..++++++...+++...--+++.+++. +++|+++..+++|+++++.|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 2223344666777888999999999999999999999999999999 79999999999999999999875
No 64
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.7e-06 Score=82.28 Aligned_cols=261 Identities=12% Similarity=0.089 Sum_probs=156.0
Q ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHH-HHHHHHH
Q 012208 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLW-VSLGYFV 198 (468)
Q Consensus 121 ~~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~-~~~~l~~gl~-~~~~~~~ 198 (468)
.+...|.++.+.+.++.|+++.+-|........ .. .+...+..+. .-+.++.|++ +.+|-.+
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~-------------~ra~~gg~~yl~~~~Ww~G~ltm~vGei~ 80 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG-------------LRAGEGGYGYLKEPLWWAGMLTMIVGEIA 80 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc-------------ccccCCCcchhhhHHHHHHHHHHHHHhHh
Confidence 455678999999999999999999975542111 00 1111222222 2233444554 6789999
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC--CCC------------cHHHH
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPP------------SVGDF 263 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~------------~~G~l 263 (468)
-|.|+.+.|++..+.+..++.++.++++. ++||+++....+|.+++++|-.+++... ... ..+.+
T Consensus 81 NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl 160 (335)
T KOG2922|consen 81 NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL 160 (335)
T ss_pred hHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH
Confidence 99999999999999999999999999998 8999999999999999999999876432 111 12211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHH--HH---HHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208 264 ---LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVAL--LS---TIWVLVGGWFDSSQDFDQSPWTWTMLWDW 335 (468)
Q Consensus 264 ---lallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l--~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (468)
..++..++ ++.-.+..+....+++.....-.+.+.+ +. +-.++-....... ....
T Consensus 161 iy~~~iil~~~-----il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~----ql~~-------- 223 (335)
T KOG2922|consen 161 VYVIIIILIVL-----ILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN----QLFY-------- 223 (335)
T ss_pred HHHHHHHHHHH-----HHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc----cccc--------
Confidence 11111111 1111122222222444443322222210 00 0011111110011 0000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCcc--chh----hHHHHHHHHHH
Q 012208 336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERW--STA----GWIGAALVLGG 408 (468)
Q Consensus 336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~--t~~----~~iG~~lIi~G 408 (468)
+..|..++.+..+ .+.+.--.++|++..+++.++++.| +-..++++-+.++|+|.- +.. .+.|+..|+.|
T Consensus 224 --~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G 300 (335)
T KOG2922|consen 224 --PLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLG 300 (335)
T ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhe
Confidence 1125555444443 3555556689999999999988887 556677777888898753 333 46788899999
Q ss_pred HHHHHhccC
Q 012208 409 SLLVQMYRS 417 (468)
Q Consensus 409 v~l~~~~~~ 417 (468)
+++....++
T Consensus 301 ~flL~~~kd 309 (335)
T KOG2922|consen 301 IFLLHRTKD 309 (335)
T ss_pred eeEeeeecc
Confidence 888754443
No 65
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.12 E-value=4.3e-07 Score=84.29 Aligned_cols=263 Identities=12% Similarity=0.117 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD--VKTRNAGIELGLWVSLGYFVEALG 202 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~l~~gl~~~~~~~~~~~A 202 (468)
..+++.++-++.||+........- -.|.+.+..-.+-+.++.+.+++...+. ....--.++.|+++.++....+.|
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~G--G~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka 79 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFG--GKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA 79 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecC--CChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence 357889999999999877664322 3566665554444444444444443221 222333456688889999999999
Q ss_pred HhcCchhhHHHHh-hhhHHHHHHHHH-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHHH
Q 012208 203 LLTSDAGRASFIS-LFTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNFL 267 (468)
Q Consensus 203 l~~~~~~~a~ii~-~~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llall 267 (468)
+++..++.+.++. .++-+-+.+++. ++||-.+..+ .+++++.+.|+.+-+..+. ....|....+.
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i 159 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI 159 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence 9999999999995 566667777777 6898777654 4577788888888765431 12478888889
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHH
Q 012208 268 SAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYT 347 (468)
Q Consensus 268 aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l 347 (468)
+.++|..|.++.+...- +..+...-.+.-++++++... .. ... ...... .|. -+..
T Consensus 160 St~GYv~yvvl~~~f~v--~g~saiLPqAiGMv~~ali~~----~~---~~~--~~~~K~------------t~~-nii~ 215 (288)
T COG4975 160 STLGYVGYVVLFQLFDV--DGLSAILPQAIGMVIGALILG----FF---KME--KRFNKY------------TWL-NIIP 215 (288)
T ss_pred eccceeeeEeeeccccc--cchhhhhHHHHHHHHHHHHHh----hc---ccc--cchHHH------------HHH-HHhh
Confidence 99999999998776542 222333223333333332221 11 111 111111 122 2333
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHHHHHHh
Q 012208 348 GIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAG----WIGAALVLGGSLLVQM 414 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~----~iG~~lIi~Gv~l~~~ 414 (468)
|+. -.++...+..+-+..+.+..=.++-+..+++.+-+.++++|+=|..+ ++|.+++++|..+...
T Consensus 216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 443 45677777888888888777777788889999999999999988775 4688888888776544
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.92 E-value=9.1e-05 Score=62.72 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
+.+++.++++.++.+++++.+.+.+=.+ ..+..+.+.++++++|||++++.+++|.++|++|++......+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3556667899999999999999887555 5689999999999999999999999999999999998866543
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00033 Score=65.72 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH----HHHH-HHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIEL----GLWV-SLGYFV 198 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~----gl~~-~~~~~~ 198 (468)
..|..+.+.+..+|+..-+..|-..+..+...-+..-+.+++++.+|+-.......-.....+.. |++. .+.+.+
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence 36899999999999999998887765667777788889999999998877654433333333333 3332 456789
Q ss_pred HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhh
Q 012208 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG 249 (468)
Q Consensus 199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~ 249 (468)
-..+++.+|...-+++.++.|.+.++.++ +++|+++..||++++..+.+..
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 8999999999999988887765
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.78 E-value=0.00074 Score=67.55 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
|+..+.++++- +.+..+.+.|+++++.+-++++..+..++++++++++++++.++.+++|+++.++|+.++...+..
T Consensus 79 ~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 79 WWKYFLLALLD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 44455567664 567778899999999999999999999999999999999999999999999999999988876543
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.73 E-value=0.00039 Score=58.10 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
..+++.++++.++..++++.+.+.+=.+ ..+..+...++++++|||++++.+++|+++|++|++..+...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3556677889999999999999877444 668889999999999999999999999999999999987543
No 70
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.72 E-value=3.9e-06 Score=78.85 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=99.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcccc
Q 012208 257 PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM 336 (468)
Q Consensus 257 ~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (468)
..+.|.++.-++ .++....++.++.... ||..+....+++-.++..|..+....+...+. +...
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~---------- 98 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRK---------- 98 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEE----------
Confidence 346888888888 8888888888887765 67777777666666665555444332211111 1000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 337 VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 337 ~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
| ++.=|+. +..+.++.++++++.+-+.++++..+.|+++++++|++++|+.|....+|..+.+.|++++.+..
T Consensus 99 ----~--LiLRg~m-G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 99 ----W--LILRGFM-GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred ----E--EEeehhh-hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 1 1222333 34566677899999999999999999999999999999999999999999999999998877543
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.65 E-value=0.00093 Score=64.42 Aligned_cols=126 Identities=18% Similarity=0.090 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVE 199 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~ 199 (468)
+..++++.++++.+.+....++.|.. +++++...+-...-..+..+++... +....+....-++-|+++..++.++
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~ 212 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY 212 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence 34578999999999888878887763 3677666654433222222222221 2222233444577799999999999
Q ss_pred HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHH----HHHHHHHhhh
Q 012208 200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWF----GVLISALGVG 249 (468)
Q Consensus 200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~----gi~l~l~Gv~ 249 (468)
+.|.+....+.+-.+..+.+++..+.+. ++||+-+++++. |+++.+.|.+
T Consensus 213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998 799999988765 4444444443
No 72
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.62 E-value=0.00022 Score=59.49 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=76.2
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 012208 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210 (468)
Q Consensus 131 lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~ 210 (468)
++..++||.+.+++|....+.++..-.. |...-...++ ..+++++-=+++..+...|++.+...+.+.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll-----------~n~~y~ipf~lNq~GSv~f~~~L~~~dlSl 69 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL-----------LNPKYIIPFLLNQSGSVLFFLLLGSADLSL 69 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 3467899999999998766544333221 3222111111 111222223346778899999999999999
Q ss_pred HHHHh-hhhHHHHHHHHHHhcCc-cchhHHHHHHHHHHhhhhh
Q 012208 211 ASFIS-LFTVIVVPLFDGMLGAI-IPAHTWFGVLISALGVGML 251 (468)
Q Consensus 211 a~ii~-~~~Pl~~~ll~~~l~er-~~~~~~~gi~l~l~Gv~li 251 (468)
+.++. ++.-++|++.+++++|+ .++..++|+++.+.|+.+.
T Consensus 70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99995 78888999999976655 5677899999999999875
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.59 E-value=0.003 Score=55.13 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP 340 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (468)
..+++++++.+-++...+..++.+..+ +|+...+..+..+.+....+.+..... ........+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p-------------- 64 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP-------------- 64 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC--------------
Confidence 467889999999999999999988753 578888888888888877766665543 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHH-H---hCCccchhhHHHHHHHHHHHH
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWF-L---LGERWSTAGWIGAALVLGGSL 410 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~-l---lgE~~t~~~~iG~~lIi~Gv~ 410 (468)
|+. ++|.+.+++...+....+++.+++....... -+.+.+++++.+ + -++++++.+++|.+++++|++
T Consensus 65 ~w~--~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 65 WWA--YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred hHH--hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 222 3355555666667788999999988876665 566677788886 2 347899999999999999976
No 74
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.58 E-value=0.0021 Score=63.85 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhccCCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHH
Q 012208 272 FGIHMLRTERISRSTKKE-NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF 350 (468)
Q Consensus 272 ~a~~~v~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~ 350 (468)
+..+.++.+++.++.... .+..+++.+.....+...+...... ....+..+ +...+..+++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~ 73 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRKIP--------------LKKYAILSFL 73 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCcCh--------------HHHHHHHHHH
Confidence 445667778777765543 4788888888888887776555443 11111111 2223344443
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
..++..+-+.++++++.....++....|+..++++++++|++.+..++++.+++.+|+++....+.+
T Consensus 74 -~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 74 -FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred -HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 4666778889999999999999999999999999999999999999999999999999998876544
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.58 E-value=0.0021 Score=53.48 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhh
Q 012208 184 AGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (468)
Q Consensus 184 ~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li 251 (468)
..+..-+....++++...+++++|.+.+-.+ ....-+.+.+.+. ++||++++.+++|+.+.+.|++++
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444455567788999999999999999666 5677888888888 799999999999999999999875
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00074 Score=55.41 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+++..++|.+...++|+.+.+.+ ++......+.+.+.++++|||+.++.+++|.+++++|++..+...
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 444567788999999999998765 777889999999999999999999999999999999999877643
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.00045 Score=68.35 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208 256 SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW 335 (468)
Q Consensus 256 ~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (468)
.+...|..++++++++.+....+.|+...+.+. +...-. ....+.....
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~--------------------------~~~~~~l~~~---- 51 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG--------------------------SGGRSYLRRP---- 51 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc--------------------------chhhHHHhhH----
Confidence 345689999999999999999999987665421 101000 0000000000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
.|+ .|.+..+++..+.+.|+...+++.++++..+..++..+++.++++|+++...++|+++++.|..+....
T Consensus 52 ----~W~----~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 52 ----LWW----IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred ----HHH----HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 022 234444556667788999999999999999999999999999999999999999999999999887665
Q ss_pred cC
Q 012208 416 RS 417 (468)
Q Consensus 416 ~~ 417 (468)
..
T Consensus 124 ~~ 125 (300)
T PF05653_consen 124 AP 125 (300)
T ss_pred CC
Confidence 43
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.0011 Score=54.78 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 349 IFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 349 v~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
+++.++++.+...++|+.+.+.+ ++...+..+.+.+.++++|||++++.+++|+.+|++|++..+..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 55567888899999999998765 66677899999999999999999999999999999999987643
No 79
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.43 E-value=0.0031 Score=53.43 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 185 GIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 185 ~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
.+...++.+++++++..+++++|.+.+-.+ ..+.-+.+.+++. +++|+++..+++|+.+.+.|++++-..
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 344455567889999999999999999877 4688888999998 899999999999999999999987543
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0037 Score=51.39 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 181 ~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
+..+.+..-++...++.++-.|++++|.+.+-.+ ...-.+.+.+.++ ++||+.+..+++++.+.++|++.+-
T Consensus 29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 4444455566677889999999999999999666 6788888999998 8999999999999999999998764
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.40 E-value=0.0016 Score=54.26 Aligned_cols=66 Identities=21% Similarity=0.429 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
.+++.++++.+...++|+.+.+.+ ++...+..+.+.+.++++|||++++.+++|+++|++|++..+
T Consensus 41 ~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345567788899999999998776 666678889999999999999999999999999999998764
No 82
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.37 E-value=0.0046 Score=51.64 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 186 IELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
+..-++.+.+++++..++++.|.+.+-.+ ..+.-+.+.++++ ++||++++.+++|+.+.+.|++++-..
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33344566788889999999999999777 5678888899998 899999999999999999999998543
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.36 E-value=0.0026 Score=52.62 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 183 ~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
...+..-++...++++...+++++|.+.+-.+ ....-+.+.+++. ++||++++.+++|+.+.+.|++.+-
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 33344455567888999999999999999666 5688888889998 8999999999999999999999864
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.28 E-value=0.011 Score=51.45 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcc-c----ccchhhHHHHHHHHHHHHHHHH
Q 012208 127 IFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-D----VKTRNAGIELGLWVSLGYFVEA 200 (468)
Q Consensus 127 ~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~----~~~~~~~l~~gl~~~~~~~~~~ 200 (468)
.++.+++..+-+....++-.+.+..+ |+.-.++.+..+.+.+..+....++ + ++..+|.+.-|+++.....+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence 45566666777777777776666666 9999999999999998877776554 2 1234455566888888889999
Q ss_pred HHHhcCchhhHHHHhhhhHH-HHHHHHHH-----hcCccchhHHHHHHHHHHhhhh
Q 012208 201 LGLLTSDAGRASFISLFTVI-VVPLFDGM-----LGAIIPAHTWFGVLISALGVGM 250 (468)
Q Consensus 201 ~Al~~~~~~~a~ii~~~~Pl-~~~ll~~~-----l~er~~~~~~~gi~l~l~Gv~l 250 (468)
+.+..++++.+..+....=+ ...++..| -|+++++.+.+|+++.+.|+++
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998887655444 44444453 3688999999999999999875
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.16 E-value=0.0029 Score=63.43 Aligned_cols=144 Identities=11% Similarity=-0.038 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH--HHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208 258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE--ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW 335 (468)
Q Consensus 258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (468)
...|+++.+++++|++.+++-.|+. ++.+ .+.. |- .++.-++............-.......
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~----wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~---------- 68 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KKWS----WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSF---------- 68 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CCCc----hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc----------
Confidence 4579999999999999999999984 3321 2222 32 111111111000111100000000000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCcc---c----hhhHHHHHHHHH
Q 012208 336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERW---S----TAGWIGAALVLG 407 (468)
Q Consensus 336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~---t----~~~~iG~~lIi~ 407 (468)
++..+...+. +.+.-.+++..+..++++.+.++...+.. ++.+++.+++.+++||.. + ...++|.+++++
T Consensus 69 -~~~~~~~~~l-~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 69 -SGSTLLPVFL-FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred -CHHHHHHHHH-HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 1112333333 33345678999999999999998876665 889999999999999765 2 235789999999
Q ss_pred HHHHHHhccCCC
Q 012208 408 GSLLVQMYRSSS 419 (468)
Q Consensus 408 Gv~l~~~~~~~~ 419 (468)
|+++..+..+++
T Consensus 147 Gi~l~s~Ag~~k 158 (345)
T PRK13499 147 GVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHHhhhhc
Confidence 999999855443
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.027 Score=49.40 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF 339 (468)
Q Consensus 260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (468)
...+++++++++-.+..-+..++.+..+ +|+......++++.+.+..+.+..............+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p------------- 69 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP------------- 69 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc-------------
Confidence 4567889999999999999999988764 6788888888888887777766643322222112211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChh-HHHHHhhhHHHHHHHHHHHHhC----CccchhhHHHHHHHHHHHHHHHh
Q 012208 340 PWVPALYTGIFSTGICLWIEIAAMRDVSAT-ETAIIYGLEPLWGAGFAWFLLG----ERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~-~~s~~~~l~pv~a~l~~~~llg----E~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
|+. +.|.+..++-.+.-.....+.+++ .......-+.+.+++++.+=+. .+++...++|++++++|+++...
T Consensus 70 -wW~--~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 70 -WWA--WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred -hHH--HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 222 223333333333334566666654 4556666788888888877543 57899999999999999665554
No 87
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.00 E-value=0.44 Score=47.36 Aligned_cols=279 Identities=12% Similarity=0.020 Sum_probs=158.7
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHH----h-------cccccchhhHHHHHH
Q 012208 123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFW----A-------RDDVKTRNAGIELGL 190 (468)
Q Consensus 123 ~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~----~-------~~~~~~~~~~l~~gl 190 (468)
-..|+++..++.++-|+.++-.|...+ ....++++ ...++.+++ |+..- + .-+.....+..+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 467899999999999998888887543 12233333 223333322 22221 1 112234455567789
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHHHh--------cCccchhHHHHHHHHHHhhhhhccCC------
Q 012208 191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGML--------GAIIPAHTWFGVLISALGVGMLECSG------ 255 (468)
Q Consensus 191 ~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~~l--------~er~~~~~~~gi~l~l~Gv~li~~~~------ 255 (468)
+.+++...|=.+++|+..+...-| ..+.-++..++-.++ .++-....++|++++++|+.++...+
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 999999999999999988876544 455556665554432 23334567889999999999986432
Q ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHHHHh------hccCCCCchhH----HHHHHHHHHHHHHHHHHHhhcC-C
Q 012208 256 -------SPPSVGDFLNFLSAIFFGIHMLRTERIS------RSTKKENFLPL----LGYEICVVALLSTIWVLVGGWF-D 317 (468)
Q Consensus 256 -------~~~~~G~llallaa~~~a~~~v~~r~~~------~~~~~~~~~~~----~~~~~~~~~l~~~~~~l~~~~~-~ 317 (468)
.....|.++++++++.-++.++-...-. ... ..+++.. ....+..+.+.-+...+..... .
T Consensus 162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~-G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k 240 (344)
T PF06379_consen 162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAA-GVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNK 240 (344)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHc-CCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcC
Confidence 1235899999999999888887644211 111 1222222 1112233334444444332211 1
Q ss_pred CC---CCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCC----hhHHHHHhhhHHHHHHHHHHHHh
Q 012208 318 SS---QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVS----ATETAIIYGLEPLWGAGFAWFLL 390 (468)
Q Consensus 318 ~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~----a~~~s~~~~l~pv~a~l~~~~ll 390 (468)
.. .+.......+. ......+ ++.+-=..++++|-++-.+.+ ..--.+.+.+..+++-+++. ++
T Consensus 241 ~~s~~~d~~~~~~~~~--------~N~~~~a-LaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~l 310 (344)
T PF06379_consen 241 NWSWKGDYSVAKPPLL--------KNYLFCA-LAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-IL 310 (344)
T ss_pred CCccccccccccchhH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HH
Confidence 11 01110000000 0111111 122222346666666666666 34556777888889999996 56
Q ss_pred CCc------cchhhHHHHHHHHHHHHHHHhc
Q 012208 391 GER------WSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 391 gE~------~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
+|. .-..-++|++++++++.++-+.
T Consensus 311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 311 KEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 663 2344578999999988876543
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.86 E-value=0.004 Score=50.46 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 012208 348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALV 405 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lI 405 (468)
.+.+.++++.++.+++++.+.+.+ .+...+..+...+.+.+++||++++.+++|..+|
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444667888999999999999888 5556699999999999999999999999999886
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.85 E-value=0.0037 Score=59.95 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP 340 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (468)
|.+.+++|+++|+...+=.|+.... |++....++.....+......+.... +... +
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g----Dg~~fQw~~~~~i~~~g~~v~~~~~~----p~f~----p------------ 56 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG----DGFFFQWVMCSGIFLVGLVVNLILGF----PPFY----P------------ 56 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC----CcHHHHHHHHHHHHHHHHHHHHhcCC----Ccce----e------------
Confidence 6778899999999999988877644 66666555555555555544443221 1110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHH-HhCCcc-----chhhHHHHHHHHHHHHHHH
Q 012208 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWF-LLGERW-----STAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~-llgE~~-----t~~~~iG~~lIi~Gv~l~~ 413 (468)
+..+|...-+.+..+-.-.++.++-+..-.+-. .+.+.+-+.+-+ +||+.+ .+..++|++++++|..+..
T Consensus 57 ---~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 57 ---WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred ---HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 112233333445555556777777666544433 466666666654 565432 4668999999999999888
Q ss_pred hccCCCC
Q 012208 414 MYRSSSP 420 (468)
Q Consensus 414 ~~~~~~~ 420 (468)
.-|...+
T Consensus 134 fik~~~~ 140 (254)
T PF07857_consen 134 FIKSEEK 140 (254)
T ss_pred eecCCCC
Confidence 7665543
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.72 E-value=0.0081 Score=57.72 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
..++..+.+.++++.+|+...++..+..+++.++.+++++.+.+..||++..++++|+.+.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 5678888899999999999999999999999999999999999999999999999999988765543
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.45 E-value=0.034 Score=44.97 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHH
Q 012208 189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLIS 244 (468)
Q Consensus 189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~ 244 (468)
..+.+.+++++..+++++|.+.+-.+ ..+..+.+.+++. ++||+++..+++|+.+.
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33567788999999999999999666 5688899999998 89999999999998763
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.37 E-value=0.016 Score=48.42 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHh-hhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208 348 GIFSTGICLWIEIAAMRDVSATETAIIY-GLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL 411 (468)
Q Consensus 348 gv~~~~~~~~l~~~al~~~~a~~~s~~~-~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l 411 (468)
..+....+-..|++.+++.+-+.+.++. .+.-+++++.++++.+|..+...++|+++|+.|+.+
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4444556677888999999999999885 899999999998888888888899999999999865
No 93
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.0013 Score=61.55 Aligned_cols=133 Identities=11% Similarity=0.017 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF 339 (468)
Q Consensus 260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (468)
...+++|+-++.|+.--....+... .|........+.+.++++...++.. +... .
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~GG-----~p~qQ~lGtT~GALifaiiv~~~~~--p~~T---~--------------- 56 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFGG-----KPYQQTLGTTLGALIFAIIVFLFVS--PELT---L--------------- 56 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecCC-----ChhHhhhhccHHHHHHHHHHheeec--Cccc---h---------------
Confidence 3578899999999988777665544 3444443334444444433333311 1110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHHHHHHh
Q 012208 340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERWSTAGW----IGAALVLGGSLLVQM 414 (468)
Q Consensus 340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~t~~~~----iG~~lIi~Gv~l~~~ 414 (468)
....+-.++.+.=.+++...+++++..+.+++.+++. ++.+-+.+++.++|||+.+..+. +..++++.|+++..+
T Consensus 57 ~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 57 TIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred hhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence 0112222223333458899999999999999998876 88888999999999999998874 456777788776665
Q ss_pred ccC
Q 012208 415 YRS 417 (468)
Q Consensus 415 ~~~ 417 (468)
.++
T Consensus 137 ~~~ 139 (288)
T COG4975 137 QDR 139 (288)
T ss_pred ecc
Confidence 443
No 94
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.22 E-value=0.08 Score=50.91 Aligned_cols=159 Identities=13% Similarity=0.043 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012208 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (468)
Q Consensus 126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~ 205 (468)
|++..+++++++|++++-.|.... -+++.+.++-.....+.-+++.. -+..++...+.++-|.+++.++.+-.-.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-gDg~~fQw~~~~~i~~~g~~v~~-~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-GDGFFFQWVMCSGIFLVGLVVNL-ILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-CCcHHHHHHHHHHHHHHHHHHHH-hcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 456788999999999999996543 46665555544333333333332 2344556677788889999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHH-HH--Hhc---Cc--cchhHHHHHHHHHHhhhhhccCC----------------------
Q 012208 206 SDAGRASFISLFTVIVVPLF-DG--MLG---AI--IPAHTWFGVLISALGVGMLECSG---------------------- 255 (468)
Q Consensus 206 ~~~~~a~ii~~~~Pl~~~ll-~~--~l~---er--~~~~~~~gi~l~l~Gv~li~~~~---------------------- 255 (468)
+..+....|-...-+++--. +. +++ |. -+...++|++++++|..+....+
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE 158 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence 99999999976654444433 33 343 22 23467889999999988764210
Q ss_pred --CC------------------CcHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012208 256 --SP------------------PSVGDFLNFLSAIFFGIHMLRTERISRST 286 (468)
Q Consensus 256 --~~------------------~~~G~llallaa~~~a~~~v~~r~~~~~~ 286 (468)
++ ...|..+++++++.|+...+=..++..+.
T Consensus 159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00 13699999999999999887777666553
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.097 Score=50.84 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHh----------cccccchhhHHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWA----------RDDVKTRNAGIELG 189 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~----------~~~~~~~~~~l~~g 189 (468)
+...|++++....++=|+....-+.+.+ .++++.+++.--++..+.-....... +..++..++.++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 4567888888888888888888876554 47899988888777777766554433 23455677888999
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208 190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (468)
Q Consensus 190 l~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l 250 (468)
.++.+|+.+.|+-++.-.+-.-+.|+-+-=++..+++. .++.+++..+|+|+++.+.|+.+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 99999999999999876666666777777888888888 69999999999999999999875
No 96
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.72 Score=40.55 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcccc------cchhhHHHHHHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARDDV------KTRNAGIELGLWVSLGYF 197 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~------~~~~~~l~~gl~~~~~~~ 197 (468)
..++..+++..+-.....+.-.+.+..+ |+.-.++.+..+.++++.+...+.+.+ +.++|.+.-|+++.+...
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence 4455666666666666666665555554 999999999998888877766643221 224444555666655555
Q ss_pred HHHHHHhcCchhhHHHH-hhhhHHHHHHHHHH--h---cCccchhHHHHHHHHHHhhhhhc
Q 012208 198 VEALGLLTSDAGRASFI-SLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 198 ~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~~--l---~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
........+.++....+ ..-+-+...++..| + +++++..+++|+++.++|+.++.
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 55555555555555444 34444555555543 3 47899999999999999965554
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.78 E-value=0.21 Score=47.09 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHH-HHHHHHHHHHHHHhcc------c--ccchhhHHHHHHHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRF-VMSAIPFLPFVFWARD------D--VKTRNAGIELGLWVS 193 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~-~~a~l~ll~~~~~~~~------~--~~~~~~~l~~gl~~~ 193 (468)
..+...++.+.++-+...+..+...+.-+ .+..-.+.. ..+.+........... + .......+...+...
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV 163 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence 45666677777777777777776544321 111111111 1111111111111111 1 111223444556667
Q ss_pred HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (468)
Q Consensus 194 ~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l 250 (468)
.+..+..+.+++.+....++...+.++++.+++. +++++++..+++|+.+.+.|+.+
T Consensus 164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 7778888899999999999999999999999998 78999999999999999998764
No 98
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.52 E-value=1.9 Score=43.00 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
...+...+++.++.+.+|+...+...+..+.+.++..++++++.+..||...++.+.|+.++....
T Consensus 101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 356677788999999999999999999999999999999999999999999999999999998433
No 99
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=94.17 E-value=0.4 Score=39.07 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCC------HHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Q 012208 129 LLNVITIVYASDIPILKAAEEIMH------PASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALG 202 (468)
Q Consensus 129 l~lla~~~wg~~~~~~k~~~~~~~------p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~A 202 (468)
-++...++||...+++|....+.+ .....++|-...... .+.++.--+++-.+..+||.-
T Consensus 7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l--------------~w~Y~iPFllNqcgSaly~~t 72 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL--------------NWEYLIPFLLNQCGSALYYLT 72 (125)
T ss_pred HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHhhHHHHHHH
Confidence 356678899999999997554322 222233332221111 111222233456678899999
Q ss_pred HhcCchhhHHHHh-hhhHHHHHHHHHHhcCccch-hHHHHHHHHHHhhhhhc
Q 012208 203 LLTSDAGRASFIS-LFTVIVVPLFDGMLGAIIPA-HTWFGVLISALGVGMLE 252 (468)
Q Consensus 203 l~~~~~~~a~ii~-~~~Pl~~~ll~~~l~er~~~-~~~~gi~l~l~Gv~li~ 252 (468)
++..|.+.++.+. ++.-.|+.+.+..++|+... +.++|..+.+.|+.+..
T Consensus 73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 9999999999885 56777888888888887665 56789999999988753
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.43 Score=44.76 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHH----------HhcccccchhhHHHHHHHH
Q 012208 125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVF----------WARDDVKTRNAGIELGLWV 192 (468)
Q Consensus 125 ~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~----------~~~~~~~~~~~~l~~gl~~ 192 (468)
.|-++++++..+=|........... .-+...+++.-.+...+.+..-+. +-.+.+..+..+.+++++.
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4666777777777777766543221 122223333333333333322222 2233444566677889999
Q ss_pred HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
.+|..+.|.-+.+-++-..++++.+--+|+.+.+. +++.+++.++|+|.++.+.|...=.
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 99999999999988888899999999999999999 7899999999999999999987644
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.024 Score=55.37 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208 256 SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW 335 (468)
Q Consensus 256 ~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (468)
.++..|.++++.+.++.+...++.|+..++... ..........+-. ..
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---------------------~~~ra~~gg~~yl--~~--------- 64 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---------------------SGLRAGEGGYGYL--KE--------- 64 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---------------------hcccccCCCcchh--hh---------
Confidence 356789999999999999999988887766310 0000000000000 00
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
...+.|.+..++|-.+.+.|....+++.++++..+..+++.+++.++++|++++...+|+++.++|..++..+
T Consensus 65 -------~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 65 -------PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred -------HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 0113466666677777778888899999999999999999999999999999999999999999998888876
Q ss_pred cCCCC
Q 012208 416 RSSSP 420 (468)
Q Consensus 416 ~~~~~ 420 (468)
..+++
T Consensus 138 aP~e~ 142 (335)
T KOG2922|consen 138 APKEQ 142 (335)
T ss_pred cCccc
Confidence 65443
No 102
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=93.56 E-value=0.021 Score=55.35 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=76.6
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhc---c-----ccc-----------chhhHHHHHHH
Q 012208 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---D-----DVK-----------TRNAGIELGLW 191 (468)
Q Consensus 131 lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~---~-----~~~-----------~~~~~l~~gl~ 191 (468)
+++.++||+.....|++.+.--..+..++-+.++.++..+++...- + .+. .....++-|+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 5678999999999999887544445677888887766655554421 1 111 11123344666
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHh-hhhHHHHHHHHHHhcCccchhH--HHHHHHHHHhhhh
Q 012208 192 VSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDGMLGAIIPAHT--WFGVLISALGVGM 250 (468)
Q Consensus 192 ~~~~~~~~~~Al~~~~~~~a~ii~-~~~Pl~~~ll~~~l~er~~~~~--~~gi~l~l~Gv~l 250 (468)
..+++++.-+|+.+...+.+-++. .+.-++..++-+|+..|.++.. ..|+.+.++.+++
T Consensus 82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHH
Confidence 778889999999998888877764 4444455555567777776543 3355555555544
No 103
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.11 E-value=0.29 Score=48.65 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhh----cCCHHHHHHHHHHHHHHHHH-HHHHHhccccc------chhh----HH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDVK------TRNA----GI 186 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~ll-~~~~~~~~~~~------~~~~----~l 186 (468)
-...|......+.+..+.-.++.|.... .++++.+.....-++.+.++ |+.....+... .+.. .+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence 4568999999999999999999997653 48899998888888888888 77665433221 1111 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 187 ~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
...++.++-+...|..+..+++-.-++...+==+++.+.++ +++++++....+|.+++++|+++-.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 22344455556667777777777766665555555666776 7889999999999999999998754
No 104
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=92.26 E-value=2 Score=43.24 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHHH----Hhcccccc-----hhhHHHH
Q 012208 122 KKIRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVF----WARDDVKT-----RNAGIEL 188 (468)
Q Consensus 122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~l~ll~~~~----~~~~~~~~-----~~~~l~~ 188 (468)
+...|-++.+++++++|...++.|.-.++ ++--.+..+--++..++++|.+. ...++... ..-.+..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 45789999999999999999999974432 33222222222333444443222 22222211 1123444
Q ss_pred HHHH-HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHh-cCccchhHHHHHHHHHHhhhhhccCC
Q 012208 189 GLWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG 255 (468)
Q Consensus 189 gl~~-~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l-~er~~~~~~~gi~l~l~Gv~li~~~~ 255 (468)
++.+ +++-+++..|+-.+++-.+++-..++..+.++.-.++ +..+++..++|...+++|-+++...+
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 5554 5788999999999998888888777777777777755 67899999999999999999987654
No 105
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=90.59 E-value=0.17 Score=46.08 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208 355 CLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 355 ~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
+..+|..+++.++|+.++.+..-+--|..+++++++|+++....++..++.+.|++++.+.+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 345788999999999999999999999999999999999999999999999999888776543
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.35 E-value=1.5 Score=43.74 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccch
Q 012208 259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVT 338 (468)
Q Consensus 259 ~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (468)
..|+++..+++++.+.+++=.||..+-. -++...+ +.++ ..+..|+.......++..+.-.. .|.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~Ws-WEs~Wlv---~gi~-swli~P~~~a~l~ip~~~~i~~~----------~~~ 70 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGWS-WESYWLV---QGIF-SWLIVPWLWALLAIPDFFSIYSA----------TPA 70 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCcc-HHHHHHH---HHHH-HHHHHHHHHHHHhCCcHHHHHHh----------CCh
Confidence 5799999999999999999999875531 1111111 1222 22233333222211111110000 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCC-------ccchhhHHHHHHHHHHHH
Q 012208 339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGE-------RWSTAGWIGAALVLGGSL 410 (468)
Q Consensus 339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE-------~~t~~~~iG~~lIi~Gv~ 410 (468)
..+......|++ =+++-..|-.++|+.+.+.. ++..-+.-+++.++-.++.|+ +-....++|.++.++|+.
T Consensus 71 ~~l~~~~l~G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa 149 (344)
T PF06379_consen 71 STLFWTFLFGVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA 149 (344)
T ss_pred hHHHHHHHHHHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence 123333333443 34555666788999887665 344446666666665555442 223457889999999999
Q ss_pred HHHhccCCC
Q 012208 411 LVQMYRSSS 419 (468)
Q Consensus 411 l~~~~~~~~ 419 (468)
+..+....+
T Consensus 150 i~g~AG~~K 158 (344)
T PF06379_consen 150 ICGKAGSMK 158 (344)
T ss_pred HHhHHHHhh
Confidence 988776544
No 107
>PRK02237 hypothetical protein; Provisional
Probab=88.49 E-value=3.4 Score=34.02 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=40.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 371 TAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 371 ~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+...-...+.++++++.+-|++|+...++|.++.++|+.++.+..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3667778889999999999999999999999999999998876644
No 108
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.11 E-value=24 Score=34.93 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=52.0
Q ss_pred HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+++++.+....+++....|++..+.+.+++|-+++...+.....+++|........
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 478999999999999999999999999999999999999999999999987766544
No 109
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=83.28 E-value=2.5 Score=40.93 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208 352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
-..+-.+.+.++..++++...+......+|.-+++.-+++..++..+|+|+..+.+|++.+-..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3455667788999999999999999999999999999999999999999999999998887654
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=81.90 E-value=2.9 Score=34.31 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=39.7
Q ss_pred HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 372 AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 372 s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
+...-...+.++++++.+-|++|+...++|.++.++|+.++.+..
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 556667788999999999999999999999999999998887654
No 111
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=79.07 E-value=59 Score=33.69 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHH--HHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHH
Q 012208 345 LYTGIFSTGICLWIEI--AAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGG 408 (468)
Q Consensus 345 l~lgv~~~~~~~~l~~--~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~G 408 (468)
+.+|+++..+.+.... .-++.-++..+-.+-...=+++.+..-++-++.-=..|++|.+.+++=
T Consensus 297 ~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~~ 362 (404)
T TIGR03644 297 TLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAW 362 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3456666555554432 224445666555555555556655554443333334588887766543
No 112
>PRK02237 hypothetical protein; Provisional
Probab=78.54 E-value=14 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 216 LFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 216 ~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
....+...+..+ +-|+|+++.+++|..++++|+.+|..
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 344455556666 56899999999999999999988754
No 113
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=77.98 E-value=14 Score=35.82 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcc-----------cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhH
Q 012208 151 MHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV 219 (468)
Q Consensus 151 ~~p~~~~~~R~~~a~l~ll~~~~~~~~-----------~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~P 219 (468)
-+..++++..+.++.++++..+..... +.+.....++.++.+.+|..+...=++.-.+..++.++..-=
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 456777888888888877766554332 222333344455555555544444444556777777877778
Q ss_pred HHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208 220 IVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG 255 (468)
Q Consensus 220 l~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~ 255 (468)
.++.++++ ++..+++-...-+.++.+.|+.+=..+.
T Consensus 298 avTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 88999999 7889999998889999999999865543
No 114
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=77.24 E-value=41 Score=33.21 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHHHHhccccc-----------chhhHHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEEIM-----HPASFCAVRFVMSAIPFLPFVFWARDDVK-----------TRNAGIE 187 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~-----~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-----------~~~~~l~ 187 (468)
..|..+++.+.++-|.-+.+.+++.++- +|+...+--.-...+.+++..+.-.+..+ .......
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 4688899999999999999998765432 35554444333344444444433221110 0001111
Q ss_pred HHHH---HHHHH---HHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhh
Q 012208 188 LGLW---VSLGY---FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (468)
Q Consensus 188 ~gl~---~~~~~---~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li 251 (468)
.|.+ +.+++ ..-+.=+..++.-..++..-.-=+.+.+++. +.+++++..-|.|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 2222 22222 2222223334433333333333456677777 789999999999999999999876
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=75.10 E-value=12 Score=30.71 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=35.9
Q ss_pred HhcCchhhHHH-HhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 203 LLTSDAGRASF-ISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 203 l~~~~~~~a~i-i~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
++-...+.+-. .-....+...+..+ +-|+|+++.+++|..++++|+.++...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 44334444422 23444555566666 578999999999999999999988653
No 116
>PRK09776 putative diguanylate cyclase; Provisional
Probab=72.19 E-value=1.9e+02 Score=33.83 Aligned_cols=23 Identities=0% Similarity=-0.128 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012208 261 GDFLNFLSAIFFGIHMLRTERIS 283 (468)
Q Consensus 261 G~llallaa~~~a~~~v~~r~~~ 283 (468)
..++++...+...+...+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~~~ 93 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRKLL 93 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444443444444444443
No 117
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=1.3 Score=42.53 Aligned_cols=115 Identities=11% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012208 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSAT 369 (468)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~ 369 (468)
.|+..+.+++++...+...+.............+........ -.-++=+.++ .+......+..+++++.+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t---------~r~vlplsvV-fi~mI~fnnlcL~yVgVa 129 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLAT---------ARQVLPLSVV-FILMISFNNLCLKYVGVA 129 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHH---------HHhhcchhhe-eeeehhccceehhhcceE
Confidence 577788888888887777665544332222222211111110 1111111221 223344557789999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 370 ETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 370 ~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
..-+...+..+|++++.+++++++-+..-..++++|++|..+...
T Consensus 130 FYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd 174 (347)
T KOG1442|consen 130 FYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD 174 (347)
T ss_pred EEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence 998999999999999999999999999999999999999776543
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=15 Score=30.08 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=38.7
Q ss_pred HHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 371 TAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 371 ~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+...-...+.++++.+++=|.+|+.+.++|.++-++|+.++.+..
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3556667888899999999999999999999999999987776643
No 119
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=60 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 384 GFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 384 l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
.++.+.++|++.+..+.|.+++.+|+.++.
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 458889999999999999999999987764
No 120
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=67.17 E-value=36 Score=32.21 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=32.0
Q ss_pred hcCccchhHHHHHHHHHHhhhhhcc-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 012208 229 LGAIIPAHTWFGVLISALGVGMLEC-----SGSPPSVGDFLNFLSAIFFGIHMLRTERIS 283 (468)
Q Consensus 229 l~er~~~~~~~gi~l~l~Gv~li~~-----~~~~~~~G~llallaa~~~a~~~v~~r~~~ 283 (468)
+++|..-....|.+.+...+.++.+ -......-.+.+.++++.+..|.++.-...
T Consensus 159 ~qtK~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~Dtqll 218 (237)
T KOG2322|consen 159 LQTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYDTQLL 218 (237)
T ss_pred EeeccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 5666555555555555555554443 112334556777888888888887755443
No 121
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=66.46 E-value=77 Score=29.41 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=12.0
Q ss_pred cccccccccccccchhhhhhc
Q 012208 52 NVTNQHSKTLHFTNLTHIIKN 72 (468)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (468)
+.++++.+..-.|=++|++.+
T Consensus 21 ~~~e~~~e~~L~eil~~Llea 41 (206)
T PF06570_consen 21 GVSEEEIEELLEEILPHLLEA 41 (206)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 344455555566666676644
No 122
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=65.16 E-value=1.3e+02 Score=34.13 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=27.6
Q ss_pred hhhHHHHhhhhHHHHHHHHHH-hcCccchhHHHHHHHHHHhhhhhc
Q 012208 208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 208 ~~~a~ii~~~~Pl~~~ll~~~-l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
++.+.++..+.|+-.+.++.+ +.+|.+...+.+.+..++|.+.+.
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~~ 55 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQ 55 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhC
Confidence 356677778888877777773 445543444555555666665443
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=63.34 E-value=7.6 Score=31.84 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=25.5
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 012208 383 AGFAWFLLGERWSTAGWIGAALVLGGSLLV 412 (468)
Q Consensus 383 ~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~ 412 (468)
..++.++++|++++..+.|.++++++++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 346788999999999999999999887653
No 124
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=63.14 E-value=5.7 Score=38.96 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCCCCchhhhhccccchhhHHHH
Q 012208 266 FLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLV-GGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344 (468)
Q Consensus 266 llaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 344 (468)
+++.+||+-+-...|...++.. .. ..+.|-..++.++..++..+ .+...+-.+..+..++ ....+ ++..+..
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~-qL~Q~--n~~sv~~- 74 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLT-QLSQA--NWPSVLF- 74 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-cc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHH-HHhcC--ChHHHHH-
Confidence 4567888888888777765432 11 12344444444443333322 2222211001110000 00000 0111222
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCccc--hhhHHHHHHHHHHHHHHHhcc
Q 012208 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERWS--TAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 345 l~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~t--~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
...|.+..-++..+..+++...+-+.+-++.. +..|+++.+.|+. ..+.+ ..-+.|.+++++++++-....
T Consensus 75 A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ah 148 (336)
T PF07168_consen 75 AMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAAAH 148 (336)
T ss_pred HHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHHHH
Confidence 22333444557777778888777666544432 4444556666643 34443 244568888888887765443
No 125
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=61.66 E-value=1.4e+02 Score=27.72 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 012208 344 ALYTGIFSTGICL 356 (468)
Q Consensus 344 ll~lgv~~~~~~~ 356 (468)
.+.+|+++.++-+
T Consensus 183 ~iiig~i~~~~~~ 195 (206)
T PF06570_consen 183 YIIIGVIAFALRF 195 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3455655544443
No 126
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.34 E-value=56 Score=26.82 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 219 VIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 219 Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
.+...+..+ +-|.|+.+.+++|.+++++|+.+|...
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 333444445 458999999999999999999887654
No 127
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=60.70 E-value=2.2e+02 Score=29.79 Aligned_cols=61 Identities=16% Similarity=0.011 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208 346 YTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
-.+++..-..|..| -|+...+...-... -.--+..-++..++|.++.++.+++...+....
T Consensus 248 qssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~ 308 (429)
T PF03348_consen 248 QSSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSS 308 (429)
T ss_pred cHHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccccccc
Confidence 34566555667665 67777764444433 011234566778999999999988887765543
No 128
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=60.05 E-value=40 Score=31.77 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhcc-cc---------cchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhh
Q 012208 149 EIMHPASFCAVRFVMSAIPFLPFVFWARD-DV---------KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFT 218 (468)
Q Consensus 149 ~~~~p~~~~~~R~~~a~l~ll~~~~~~~~-~~---------~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~ 218 (468)
+.+.-+.-+++.-+++..+++.+-..-.. ++ ....+.++.|++.+.-.++.-+.++-++.+.-+++..+.
T Consensus 181 tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 181 TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 34566777888888888887766554321 11 112244455666655566777777778877778887777
Q ss_pred HHHHHHHHH-HhcCccchhHHHHHHHHHHh
Q 012208 219 VIVVPLFDG-MLGAIIPAHTWFGVLISALG 247 (468)
Q Consensus 219 Pl~~~ll~~-~l~er~~~~~~~gi~l~l~G 247 (468)
-.-..+-+. +++|+.+...+.++++++..
T Consensus 261 Klp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred hChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 777777777 78888888888877765543
No 129
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=57.15 E-value=2.8e+02 Score=29.84 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=17.4
Q ss_pred HHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 373 IIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 373 ~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
+.....|+-+.++|.+.-.-.+.....+++++++++.++..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666543222233233333333444444433
No 130
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=55.73 E-value=11 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208 355 CLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ 413 (468)
Q Consensus 355 ~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~ 413 (468)
+-.+|+.-+++.+.+.+..+.. +...|+.+.+..+-.|......++|..+|+.|+.+..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3446677888888887776655 5677888888765555566778899999999987753
No 131
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.65 E-value=15 Score=35.22 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=83.8
Q ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHH--HHHHHHH
Q 012208 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW--VSLGYFV 198 (468)
Q Consensus 121 ~~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~--~~~~~~~ 198 (468)
.++.+|-.+++.++.+++.+++.-.+..+..+-.+++..--+++.++..+=....+.......|-..++.. +.+.+ +
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~M-F 240 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTM-F 240 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHH-H
Confidence 45678888999999999999999999888899999998888888888877655555554443332222211 22222 2
Q ss_pred HHHHHh-----cCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 199 EALGLL-----TSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 199 ~~~Al~-----~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
.+|++. ..+++...+-.-++-++..++ ..++-++.|.-.++......|.++-..
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i-~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI-RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH-HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 223332 222222221122333343333 556777999999999999999887653
No 132
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=54.38 E-value=4.2 Score=39.27 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHhcCchhhHHHHhhhhHHHHHHHHH--HhcCcc-chhHHHHHHHHHHhhhhhc---cCCCCCcHHHHHH
Q 012208 193 SLGYFVEAL-GLLTSDAGRASFISLFTVIVVPLFDG--MLGAII-PAHTWFGVLISALGVGMLE---CSGSPPSVGDFLN 265 (468)
Q Consensus 193 ~~~~~~~~~-Al~~~~~~~a~ii~~~~Pl~~~ll~~--~l~er~-~~~~~~gi~l~l~Gv~li~---~~~~~~~~G~lla 265 (468)
.++..++++ -+.-.+-+..+++.+...++++++-. +||+|+ -+...+.+++.+.-..+.. ..+.....|+++.
T Consensus 33 l~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l 112 (381)
T PF05297_consen 33 LVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVIL 112 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 334444433 33334444455565555554444443 466553 3444455444444333322 2233444555443
Q ss_pred H
Q 012208 266 F 266 (468)
Q Consensus 266 l 266 (468)
+
T Consensus 113 ~ 113 (381)
T PF05297_consen 113 F 113 (381)
T ss_dssp -
T ss_pred H
Confidence 3
No 133
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.30 E-value=55 Score=32.89 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=43.3
Q ss_pred HhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-----HHHhcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 012208 137 YASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPF-----VFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (468)
Q Consensus 137 wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~-----~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a 211 (468)
|..+.-.++.+.+++..+++....++++-++...+ +.+.++....+..-++.-.+..++..+.|.+.++..++.|
T Consensus 201 Ws~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A 280 (452)
T KOG3817|consen 201 WSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIA 280 (452)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44455555555555666666666666554433222 2222233333444455555566677777778887777765
Q ss_pred HHHh
Q 012208 212 SFIS 215 (468)
Q Consensus 212 ~ii~ 215 (468)
.+|.
T Consensus 281 ~iI~ 284 (452)
T KOG3817|consen 281 AIIM 284 (452)
T ss_pred HHHH
Confidence 5553
No 134
>PRK11715 inner membrane protein; Provisional
Probab=53.60 E-value=2e+02 Score=30.21 Aligned_cols=73 Identities=15% Similarity=0.012 Sum_probs=40.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHH--HHhcCccchhHHHHHHHHHHhhhhhc
Q 012208 180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFD--GMLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 180 ~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~--~~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
-++-.+++.|+..++.+.+..-==.|++-..|-++.+..++...-+- .++|.+-...-..+++.++-|+..+.
T Consensus 329 iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~l 403 (436)
T PRK11715 329 IHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGL 403 (436)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34445666677665544333222236777777777665554333222 25776666666666666666666544
No 135
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.38 E-value=24 Score=30.75 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=31.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhh
Q 012208 207 DAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGV 248 (468)
Q Consensus 207 ~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv 248 (468)
+.-.++.+.++.|+++.+++.++-+++...+.+.++.+++|.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~ 114 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGL 114 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455677888999999999998877777777777666555554
No 136
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=52.95 E-value=2.5e+02 Score=29.35 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHhcC
Q 012208 152 HPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231 (468)
Q Consensus 152 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~e 231 (468)
+|..+..++.++-++..+++.+.-++.....+..+..++...++...+ .....+-.......|++...+-.+.++
T Consensus 58 s~~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~-----~~~~~dFH~~~~avPll~~~~~~~~~~ 132 (449)
T PF09852_consen 58 SPLTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQ-----GANLFDFHPVAFAVPLLLWALYALERR 132 (449)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHH-----hhhhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 467777778777666666666554443323444444444444333322 222334444555556655555544455
Q ss_pred ccch-----------hHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHHHHHHH
Q 012208 232 IIPA-----------HTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHM 276 (468)
Q Consensus 232 r~~~-----------~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~~a~~~ 276 (468)
|... ++-.++.++..|+.++.... ....|..+++.+.+-+.+..
T Consensus 133 r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~~r-~~r~g~~~~~~~~~~~~l~~ 187 (449)
T PF09852_consen 133 RWRLFILWALLLLLVKEDLGLTVAGIGLYLLLRRR-KRRWGLALAVFGVAWFILAT 187 (449)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHHHHHH
Confidence 4332 34455666666666666542 22246666666555555554
No 137
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=52.49 E-value=58 Score=23.30 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012208 236 HTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRS 285 (468)
Q Consensus 236 ~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~~a~~~v~~r~~~~~ 285 (468)
...+|.++.++|++++..|+. |.+..+++-...+-+....|+..+.
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp----G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP----GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356788999999999888863 6778888888888888888887654
No 138
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=49.85 E-value=3.1e+02 Score=28.30 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=63.3
Q ss_pred cCchhhHHHHhhhhHHHHHHHHH---HhcCccchhHHHH--HHHHHHhhhhhccCCCCC--c-HHHHHHHHHHHHHHHHH
Q 012208 205 TSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFG--VLISALGVGMLECSGSPP--S-VGDFLNFLSAIFFGIHM 276 (468)
Q Consensus 205 ~~~~~~a~ii~~~~Pl~~~ll~~---~l~er~~~~~~~g--i~l~l~Gv~li~~~~~~~--~-~G~llallaa~~~a~~~ 276 (468)
.++.+.+..+...+-+...+.+. .+-.|+++++.+- +++-.+|-++.....+-. . .=.+.++..+.+|+...
T Consensus 44 ~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~ 123 (394)
T COG2814 44 GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA 123 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666555 3567888776542 333333444433222211 1 12466777888888888
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 012208 277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGG 314 (468)
Q Consensus 277 v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 314 (468)
.+..++......-..+.+++.-..++.++..|+.-+.+
T Consensus 124 ~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 124 ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88777765543334555555556666666666655544
No 139
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=48.72 E-value=2e+02 Score=25.70 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCC-ccchhhHHHHHHHHHHHHHHHh
Q 012208 353 GICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE-RWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 353 ~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE-~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
.-++..|...-....+-....+..++-+...+++.+++++ ++....+.++.+-++..++...
T Consensus 62 iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~ 124 (161)
T COG3476 62 ISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTII 124 (161)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 3456666544444443344444448999999999999997 6888887777776655554443
No 140
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=47.69 E-value=1.9e+02 Score=29.29 Aligned_cols=10 Identities=0% Similarity=-0.097 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 012208 305 LSTIWVLVGG 314 (468)
Q Consensus 305 ~~~~~~l~~~ 314 (468)
+.+|.+++..
T Consensus 40 ~~lP~liF~~ 49 (385)
T PF03547_consen 40 VFLPALIFSS 49 (385)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 141
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=47.68 E-value=19 Score=31.30 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=23.3
Q ss_pred HhccCChhHHHHHhhhHHHHHHHHHHHHhC
Q 012208 362 AMRDVSATETAIIYGLEPLWGAGFAWFLLG 391 (468)
Q Consensus 362 al~~~~a~~~s~~~~l~pv~a~l~~~~llg 391 (468)
++.--+....+.+.|+.|+++++++.++++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~ 97 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQ 97 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778899999999999988877643
No 142
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=45.61 E-value=2.2e+02 Score=25.41 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=56.0
Q ss_pred cCccchhHHHHHHH-------HHHhhhhhccCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHHHHH
Q 012208 230 GAIIPAHTWFGVLI-------SALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE---NFLPLLGYE 298 (468)
Q Consensus 230 ~er~~~~~~~gi~l-------~l~Gv~li~~~~~-~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~---~~~~~~~~~ 298 (468)
|..+...+.+|+.+ ++.|+.++...+. ++......++.++++|++..++..-++++.+-. .|..-..+.
T Consensus 94 KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ia 173 (193)
T COG4657 94 KTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIA 173 (193)
T ss_pred ccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchH
Confidence 56677788888775 6788888876543 456788999999999999999877666654211 233334444
Q ss_pred HHHHHHHHHHHHHH
Q 012208 299 ICVVALLSTIWVLV 312 (468)
Q Consensus 299 ~~~~~l~~~~~~l~ 312 (468)
+..++++++.+..+
T Consensus 174 litagLmSlaFmgF 187 (193)
T COG4657 174 LITAGLMSLAFMGF 187 (193)
T ss_pred HHHHHHHHHHHcCc
Confidence 56666666655433
No 143
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=45.26 E-value=3.3e+02 Score=28.53 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh-cCchhhHHHHhhhhHHHHHHH-H-HHhcCccchhHHHHHHHHHHhhhhh
Q 012208 182 RNAGIELGLWVSLGYFVEALGLL-TSDAGRASFISLFTVIVVPLF-D-GMLGAIIPAHTWFGVLISALGVGML 251 (468)
Q Consensus 182 ~~~~l~~gl~~~~~~~~~~~Al~-~~~~~~a~ii~~~~Pl~~~ll-~-~~l~er~~~~~~~gi~l~l~Gv~li 251 (468)
+-.+++.|+..++.+.+. .|+. |++-..|-.+.....+...-+ . .++|.+-...-+.+++.++-|++.+
T Consensus 325 piQY~LVGlAl~lFYlLL-LSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~ 396 (430)
T PF06123_consen 325 PIQYLLVGLALVLFYLLL-LSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYV 396 (430)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334455555554433222 2222 455555555544333322111 2 2566555555555555555555543
No 144
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=44.95 E-value=1.5e+02 Score=31.37 Aligned_cols=49 Identities=2% Similarity=-0.080 Sum_probs=30.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHhCC-----ccchhhHHHHHHHHHHHHHHHhccCC
Q 012208 370 ETAIIYGLEPLWGAGFAWFLLGE-----RWSTAGWIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 370 ~~s~~~~l~pv~a~l~~~~llgE-----~~t~~~~iG~~lIi~Gv~l~~~~~~~ 418 (468)
...++..+.-+.=.++.++=-++ .++..|++...++++|++++.+.+++
T Consensus 225 lf~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 225 LFGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred HHHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33455555555555555431111 27888999999999998877664443
No 145
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=44.90 E-value=32 Score=29.53 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=29.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhh
Q 012208 207 DAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGV 248 (468)
Q Consensus 207 ~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv 248 (468)
....++++.+..|++..+++.++...+...+..+++.+++|.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888889999999888766666655666666555554
No 146
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=44.20 E-value=1.3e+02 Score=29.37 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHH---------hcccc--cc----hhhHH
Q 012208 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW---------ARDDV--KT----RNAGI 186 (468)
Q Consensus 124 ~~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~---------~~~~~--~~----~~~~l 186 (468)
..|+.++.++.+.-+.+.+......+ +=++-+.+|+.-.+..++++....- +.++. +. .+..+
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 46788888888888888888776554 4678899999888877766543210 00100 00 11122
Q ss_pred HHHHHHHHHHHHHHHHHhc----CchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208 187 ELGLWVSLGYFVEALGLLT----SDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (468)
Q Consensus 187 ~~gl~~~~~~~~~~~Al~~----~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~ 252 (468)
..-+++.+.+++-..++.. ++.-.++++..+-=.+..+++. .++.++++..|+|.++.+.|..+.+
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2223344444333333322 2223334444455566677777 5899999999999999999998865
No 147
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=43.94 E-value=2.9e+02 Score=26.19 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=31.6
Q ss_pred HHHhhhhHHHHHHHHHHhcCccch------hHHHHHHHHHHhhhhhccCCC
Q 012208 212 SFISLFTVIVVPLFDGMLGAIIPA------HTWFGVLISALGVGMLECSGS 256 (468)
Q Consensus 212 ~ii~~~~Pl~~~ll~~~l~er~~~------~~~~gi~l~l~Gv~li~~~~~ 256 (468)
++++....+...+++.++|+|++. .+.+|++....|+-.....++
T Consensus 4 tiiN~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~ 54 (226)
T PF04474_consen 4 TIINALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQN 54 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCc
Confidence 455666677777788878777664 367788888888887776533
No 148
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=42.82 E-value=4.2e+02 Score=27.71 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 012208 399 WIGAALVLGGSLLVQM 414 (468)
Q Consensus 399 ~iG~~lIi~Gv~l~~~ 414 (468)
+.|+.+++++++....
T Consensus 417 ~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 417 LMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 4455555554444443
No 149
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=42.45 E-value=3.4e+02 Score=26.55 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 012208 259 SVGDFLNFLSAIFFGIHMLR----TERISRSTKKENFLPLLGYEICVVALLSTIWV 310 (468)
Q Consensus 259 ~~G~llallaa~~~a~~~v~----~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (468)
.+|+.+.+++....++..++ .++..+..- =.-..|...++.++.++++
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~ga----Pk~~eW~~AfGL~vTLVWL 260 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGA----PKKMEWYAAFGLLVTLVWL 260 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC----ChhhHHHHHHHHHHHHHHH
Confidence 45665555544444444433 344433321 1234566666666665544
No 150
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=42.20 E-value=3e+02 Score=28.79 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHhCCccc-hhhHHHHHHHHHHHHHHHhccCCC
Q 012208 375 YGLEPLWGAGFAWFLLGERWS-TAGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 375 ~~l~pv~a~l~~~~llgE~~t-~~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
..+.|+++.+ +++.++-... ....-|++.+++|+++..+.+.++
T Consensus 166 Gal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 166 GALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred cchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3344555544 6655553332 234557888888888777766554
No 151
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.72 E-value=34 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=18.8
Q ss_pred ccCChhHHHHHhhhHHHHHHHHHHHH
Q 012208 364 RDVSATETAIIYGLEPLWGAGFAWFL 389 (468)
Q Consensus 364 ~~~~a~~~s~~~~l~pv~a~l~~~~l 389 (468)
......+++.+.|+-|++.++++.++
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888898888887654
No 152
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=41.60 E-value=2e+02 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.4
Q ss_pred HHHH-HhcCccchhHHHHHHHHHHhhhhh
Q 012208 224 LFDG-MLGAIIPAHTWFGVLISALGVGML 251 (468)
Q Consensus 224 ll~~-~l~er~~~~~~~gi~l~l~Gv~li 251 (468)
.++. ++||++++..+.|.++.+.+|.++
T Consensus 78 ~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 78 PFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3444 689999999999998888877655
No 153
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=41.43 E-value=2.7e+02 Score=25.17 Aligned_cols=81 Identities=7% Similarity=-0.006 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHH-HHHHHHHhhhhhccCCCCCc---HHHHHHHHHHH
Q 012208 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF-GVLISALGVGMLECSGSPPS---VGDFLNFLSAI 270 (468)
Q Consensus 195 ~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~-gi~l~l~Gv~li~~~~~~~~---~G~llallaa~ 270 (468)
....++.++.....-.|+...-...+...++.++..+++...+++ ++++.+.|..-+...++.+. .-++..+.|.+
T Consensus 9 Pli~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~rkv~km~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~ 88 (180)
T COG2917 9 PLILFFAAYKVYGIYAATAVLIVATVIQLAILWIKYRKVEKMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALV 88 (180)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHH
Confidence 334444455444444444444344445555566667778887776 44555556555554544432 34455555555
Q ss_pred HHHHH
Q 012208 271 FFGIH 275 (468)
Q Consensus 271 ~~a~~ 275 (468)
..+..
T Consensus 89 Llgs~ 93 (180)
T COG2917 89 LLGSQ 93 (180)
T ss_pred HHHHH
Confidence 44433
No 154
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=37.66 E-value=4.8e+02 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=24.2
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHhcCccchh------HHHHHHHHHHhhhhhc
Q 012208 206 SDAGRASFISLFTVIVVPLFDGMLGAIIPAH------TWFGVLISALGVGMLE 252 (468)
Q Consensus 206 ~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~------~~~gi~l~l~Gv~li~ 252 (468)
.+.+-..++-...-......+++++.|..+. .--...++++|..++-
T Consensus 155 ~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw 207 (403)
T TIGR00836 155 LDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILW 207 (403)
T ss_pred chhcCceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 3333344444555555566666676554332 1124556667776653
No 155
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.76 E-value=4.7e+02 Score=26.56 Aligned_cols=92 Identities=8% Similarity=-0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHH
Q 012208 269 AIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTG 348 (468)
Q Consensus 269 a~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg 348 (468)
.+.--++.++-|. .+.. ++...+.+.++..+.+..+.+..+|............ +....+...++
T Consensus 59 ~lgpLi~tllhk~-~~~~--i~~VPiif~ll~~a~v~~l~laflW~~ts~V~g~~hS------------~afl~L~F~LA 123 (439)
T KOG4255|consen 59 NLGPLIVTLLHKG-APGT--IPTVPIIFVLLLLACVCQLGLAFLWHDTSPVFGALHS------------WAFLSLLFGLA 123 (439)
T ss_pred cchhHHHHHHHhh-CCCc--CCCCCchhHHHHHHHHHHHHHHHHHhcchhhhcCcch------------HHHHHHHHHHH
Confidence 3333445555443 3332 3445556666677677666666666554333222211 11244445555
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHhh
Q 012208 349 IFSTGICLWIEIAAMRDVSATETAIIYG 376 (468)
Q Consensus 349 v~~~~~~~~l~~~al~~~~a~~~s~~~~ 376 (468)
++. ..+.+.+.==+.+.++.....+..
T Consensus 124 ivd-c~SnVtFLPFMs~lpp~fL~afFv 150 (439)
T KOG4255|consen 124 IVD-CTSNVTFLPFMSQLPPAFLNAFFV 150 (439)
T ss_pred HHH-hhccchhhhhhhhCChHHHHHHHH
Confidence 554 344445455566777766655443
No 156
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=36.63 E-value=42 Score=29.70 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHhcC
Q 012208 207 DAGRASFISLFTVIVVPLFDGMLGA 231 (468)
Q Consensus 207 ~~~~a~ii~~~~Pl~~~ll~~~l~e 231 (468)
..-.++++.++.|++..+++.++.+
T Consensus 73 ~llkaa~lvYllPLl~li~ga~l~~ 97 (154)
T PRK10862 73 SLLRSALLVYMTPLVGLFLGAALFQ 97 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888887764433
No 157
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.91 E-value=33 Score=29.13 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 012208 399 WIGAALVLGGSLLVQMYRSS 418 (468)
Q Consensus 399 ~iG~~lIi~Gv~l~~~~~~~ 418 (468)
++|++++++.+++..++.+|
T Consensus 74 ~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555544443
No 158
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.19 E-value=2.4e+02 Score=27.43 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=31.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhCC-----ccchhhHHHHHHHHHHHHHHHhccC
Q 012208 370 ETAIIYGLEPLWGAGFAWFLLGE-----RWSTAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 370 ~~s~~~~l~pv~a~l~~~~llgE-----~~t~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
....+..+..+.=.++.++=-++ .+|..|+++..++++|+.+..+.++
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~~ 258 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRRK 258 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666541111 3688999999999999887754443
No 159
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=35.00 E-value=3.5e+02 Score=24.60 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH----HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208 183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG----MLGAIIPAHTWFGVLISALGVGMLEC 253 (468)
Q Consensus 183 ~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~----~l~er~~~~~~~gi~l~l~Gv~li~~ 253 (468)
|+.+-.|++..+.+..+....--...+ -......|.+..++.- ++-.|++++-.+-+...+.|+++...
T Consensus 3 KDlI~igif~al~~vv~~v~~~~~~~~--p~~~~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~ 75 (186)
T PF09605_consen 3 KDLITIGIFTALYFVVMFVVGMIGGFS--PIFMLFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLM 75 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 456666777766665544433221111 1122445555555542 35678888777777777777776553
No 160
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=34.27 E-value=7.4e+02 Score=28.12 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHhcCc
Q 012208 153 PASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAI 232 (468)
Q Consensus 153 p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er 232 (468)
-..+..+|+.++++.+..++.+...++.. ...++.|++.+++-+..++.... .-.++ ....|++...+..+++||
T Consensus 92 ~~~~~~lk~~lag~~~~~~l~~~~~~~~~-~~~~i~s~~Yafsg~~~~~~~~~-~fld~---~i~lPL~llgie~~~~~~ 166 (843)
T PF09586_consen 92 ILLLIILKIGLAGLFFYLYLRKFKKSRSD-WAALIGSLLYAFSGYVIYYSFNI-MFLDA---MILLPLLLLGIERLLKEK 166 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHhhhH-HHHHH---HHHHHHHHHHHHHHHhcC
Confidence 34557788888888887666554433322 34445555554433333322211 11221 223466666666566666
Q ss_pred cchh
Q 012208 233 IPAH 236 (468)
Q Consensus 233 ~~~~ 236 (468)
-.+.
T Consensus 167 k~~~ 170 (843)
T PF09586_consen 167 KWWL 170 (843)
T ss_pred Ccch
Confidence 4433
No 161
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=33.33 E-value=4.9e+02 Score=25.81 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---hccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhH
Q 012208 344 ALYTGIFSTGICLWIEIAA---MRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGW 399 (468)
Q Consensus 344 ll~lgv~~~~~~~~l~~~a---l~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~ 399 (468)
++.+|++|.++++ +|+.+ +.+.+-+.......+.++... .++++--+++++..+
T Consensus 123 ~l~lG~l~~~~g~-~YTgGp~PlgY~gLGEi~~~vffG~l~v~-g~~yiqt~~~~~~~l 179 (303)
T COG1575 123 VLLLGLLCIAAGI-LYTGGPFPLGYMGLGEIFVGVFFGPLIVL-GAYYIQTGRLSWAIL 179 (303)
T ss_pred HHHHHHHHHHhee-eeccCCcCcccCCHHHHHHHHHHHHHHHH-HHHHHhcccchHHHH
Confidence 6667777766655 44543 666677777777777765443 344555667766643
No 162
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.43 E-value=3.3e+02 Score=32.64 Aligned_cols=14 Identities=7% Similarity=-0.337 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 012208 267 LSAIFFGIHMLRTE 280 (468)
Q Consensus 267 laa~~~a~~~v~~r 280 (468)
.+.+++.++..+.+
T Consensus 143 GGIIG~lLs~lL~~ 156 (1355)
T PRK10263 143 GGVIGSLLSTTLQP 156 (1355)
T ss_pred cchHHHHHHHHHHH
Confidence 34444444444433
No 163
>PRK11715 inner membrane protein; Provisional
Probab=31.69 E-value=6.3e+02 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH
Q 012208 149 EIMHPASFCAVRFVMSAIPFLPFVF 173 (468)
Q Consensus 149 ~~~~p~~~~~~R~~~a~l~ll~~~~ 173 (468)
..+||++...+-...+.-.++++.+
T Consensus 327 ~~iHpiQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 327 LRIHPVQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999998888776666655443
No 164
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=31.56 E-value=4.2e+02 Score=24.42 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=21.3
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 383 AGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 383 ~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
-.+|..++++..=+..++|.+|.++=+..+..
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~L 164 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVL 164 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577788888777888888777644333333
No 165
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=30.40 E-value=6.5e+02 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHhccC
Q 012208 397 AGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 397 ~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
..+.|.+++.+|+.++.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888777666444
No 166
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=28.99 E-value=95 Score=26.69 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=15.6
Q ss_pred HHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208 385 FAWFLLGERWSTAGWIGAALVLGGSLLVQM 414 (468)
Q Consensus 385 ~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~ 414 (468)
+|.+.+++ --...++|..+++.|++....
T Consensus 77 ~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 77 LGTLCLGQ-SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 222345677777777666554
No 167
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=28.38 E-value=8.6e+02 Score=27.08 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHhhhHHHHHHHHHHHHhCC--ccchhhHHHHHHHHHHHHHHHhc
Q 012208 372 AIIYGLEPLWGAGFAWFLLGE--RWSTAGWIGAALVLGGSLLVQMY 415 (468)
Q Consensus 372 s~~~~l~pv~a~l~~~~llgE--~~t~~~~iG~~lIi~Gv~l~~~~ 415 (468)
.......|+....++....++ .......++.+.+..+......+
T Consensus 226 ~~l~~~~~l~~~~l~~~l~~~~~~~~~~~al~~a~i~l~l~~~l~r 271 (745)
T PF10101_consen 226 SALLFANPLLAFGLAASLLHNQEQGPAWSALGLAAIYLALAVWLRR 271 (745)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 556667788787777777773 33333335666666665544443
No 168
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=27.67 E-value=83 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=17.6
Q ss_pred hccCChhHHHHHhhhHHHHHHHHHHHH
Q 012208 363 MRDVSATETAIIYGLEPLWGAGFAWFL 389 (468)
Q Consensus 363 l~~~~a~~~s~~~~l~pv~a~l~~~~l 389 (468)
+..-...+++.+.|+-|+++++.+.++
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777788888877766543
No 169
>COG2245 Predicted membrane protein [Function unknown]
Probab=27.33 E-value=4.7e+02 Score=23.65 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 012208 398 GWIGAALVLGGSLLVQ 413 (468)
Q Consensus 398 ~~iG~~lIi~Gv~l~~ 413 (468)
-.+|..++++|-.+..
T Consensus 152 V~vG~iIi~Ia~IL~i 167 (182)
T COG2245 152 VAVGLIIILIAAILEI 167 (182)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666666654433
No 170
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=26.59 E-value=7.6e+02 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHH
Q 012208 149 EIMHPASFCAVRFVMSAIPFLPFV 172 (468)
Q Consensus 149 ~~~~p~~~~~~R~~~a~l~ll~~~ 172 (468)
..+||++...+-..++.-.++++.
T Consensus 321 ~~iHpiQY~LVGlAl~lFYlLLLS 344 (430)
T PF06123_consen 321 LRIHPIQYLLVGLALVLFYLLLLS 344 (430)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHH
Confidence 469999999888877665555444
No 171
>PLN02776 prenyltransferase
Probab=26.03 E-value=7e+02 Score=25.23 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=27.7
Q ss_pred HhcCccchhHHHHHHHHHHhhhhh--ccCCCCCcHHHHHHHHHHHHHHH
Q 012208 228 MLGAIIPAHTWFGVLISALGVGML--ECSGSPPSVGDFLNFLSAIFFGI 274 (468)
Q Consensus 228 ~l~er~~~~~~~gi~l~l~Gv~li--~~~~~~~~~G~llallaa~~~a~ 274 (468)
.+|++-....++|.+.+-.+.++- ... +....+.++.++..++|-.
T Consensus 118 ~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avt-g~~~~~~~~Lf~~~~~Wq~ 165 (341)
T PLN02776 118 PLKQIHPANTWVGAVVGAIPPLMGWAAAS-GQLDAGAMVLAAALYFWQM 165 (341)
T ss_pred hHccCCchhHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 578777777787877664444331 112 2334566666777777776
No 172
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.44 E-value=5.3e+02 Score=23.28 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHH--HHHHHHhhhhhccCC
Q 012208 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFG--VLISALGVGMLECSG 255 (468)
Q Consensus 195 ~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~g--i~l~l~Gv~li~~~~ 255 (468)
....++...++.+.-.++.......+...+..++.++|+++.++++ +++.+.|..++..++
T Consensus 9 P~i~Ffv~y~~~~i~~At~~~i~~~~~~v~~~~~~~r~v~~~~~is~~lv~vfG~lTl~~~d~ 71 (176)
T PF04279_consen 9 PLILFFVVYKTYGIFVATAVLIVATLAQVAYSWIRRRKVPKMQWISLVLVLVFGGLTLLFHDP 71 (176)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHHhCCc
Confidence 3444444555444444443333334444444456678999988874 333344444454443
No 173
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=23.89 E-value=9.6e+02 Score=26.07 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHH
Q 012208 259 SVGDFLNFLSAIFF 272 (468)
Q Consensus 259 ~~G~llallaa~~~ 272 (468)
..|.+.+++++-|-
T Consensus 294 ~~G~l~~l~~~PC~ 307 (571)
T PRK00293 294 VMGAISGLICSPCT 307 (571)
T ss_pred HHHHHHHHHhCCCc
Confidence 46677777754443
No 174
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.04 E-value=9.3e+02 Score=25.64 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=9.7
Q ss_pred HhCCccchhhHHHHHHH
Q 012208 389 LLGERWSTAGWIGAALV 405 (468)
Q Consensus 389 llgE~~t~~~~iG~~lI 405 (468)
++|..-.|..+.+..++
T Consensus 176 ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 176 LLGTEDLWPYLLAFPLI 192 (485)
T ss_pred hcCCCcchHHHHHHHHH
Confidence 45666666665555554
No 175
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=21.54 E-value=8.9e+02 Score=24.87 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHh-cCchhhHHHHhhhhHHH--HHHHHHHhcCccchhHHHHHHHHHHhhhh
Q 012208 178 DVKTRNAGIELGLWVSLGYFVEALGLL-TSDAGRASFISLFTVIV--VPLFDGMLGAIIPAHTWFGVLISALGVGM 250 (468)
Q Consensus 178 ~~~~~~~~l~~gl~~~~~~~~~~~Al~-~~~~~~a~ii~~~~Pl~--~~ll~~~l~er~~~~~~~gi~l~l~Gv~l 250 (468)
.+-++-.+++.|+...+.+.+ ..|+. ++.-..|-++.++.... ..-+...+|-+.+.......+..+-|+..
T Consensus 321 ~~~Hp~QY~LVGlsLv~FYLL-LLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~g~~f~~~L~~lygvm~ 395 (443)
T COG4452 321 QRLHPMQYLLVGLSLVMFYLL-LLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWRNGLLFFLALLLLYGVMF 395 (443)
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 334455566667665544333 33443 56666666665443322 22222345544444333333444444443
No 176
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.43 E-value=1.2e+03 Score=26.31 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=15.2
Q ss_pred HhhhHHHHHHHHHHHHhCCccchhh-HHHHHHHHHHHHHH
Q 012208 374 IYGLEPLWGAGFAWFLLGERWSTAG-WIGAALVLGGSLLV 412 (468)
Q Consensus 374 ~~~l~pv~a~l~~~~llgE~~t~~~-~iG~~lIi~Gv~l~ 412 (468)
+..+..+++.+++-.+......... +.++++++++++..
T Consensus 692 ~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 692 LCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443323222222233 34444444444433
No 177
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=9.6e+02 Score=25.12 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG 255 (468)
Q Consensus 188 ~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~ 255 (468)
-|..+.....+.++++.+.|...+.++....=+...++.. +--.+......|++..+.|..++...+
T Consensus 260 pg~iG~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~E~-~~p~fGvigl~Gii~~iiG~~~L~~~~ 326 (436)
T COG1030 260 PGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVAEA-FVPGFGVIGLLGIILFIIGLLLLFPSG 326 (436)
T ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHhhhhccCCC
Confidence 3666777778888888888887766654332222222211 112224556778888888888776554
No 178
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.31 E-value=6.3e+02 Score=24.48 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=30.2
Q ss_pred HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012208 228 MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284 (468)
Q Consensus 228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~~a~~~v~~r~~~~ 284 (468)
.+|+|.+.....++++.+.++....... ......++.+++++.|.+..++.-.+..
T Consensus 42 ~~G~r~~~i~~~~Ll~~v~t~~~~~~~~-~~~~~~~l~~~Gglwy~~lsl~~~~l~p 97 (284)
T PF12805_consen 42 VYGPRAATIGFATLLVAVYTMAGPSPGP-EALEHALLFLAGGLWYLLLSLLWWPLRP 97 (284)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566665555555544444333222211 2234556677777777777776655544
Done!