Query 012208
Match_columns 468
No_of_seqs 232 out of 1998
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 4.7E-09 1.6E-13 90.0 8.0 71 346-416 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 3E-07 1E-11 75.9 10.1 71 346-416 34-105 (110)
3 3b5d_A Multidrug transporter E 98.5 2.2E-06 7.5E-11 70.7 13.1 67 189-255 37-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 3.7E-06 1.3E-10 71.9 9.0 66 189-254 37-104 (137)
5 3b9w_A Ammonium transporter fa 72.1 81 0.0028 31.3 20.9 62 344-406 262-330 (407)
6 3l1l_A Arginine/agmatine antip 51.5 1.2E+02 0.0042 29.5 12.0 23 397-419 409-431 (445)
7 3hd6_A Ammonium transporter RH 35.6 3.6E+02 0.012 27.2 22.5 100 151-251 123-233 (490)
8 3zux_A Transporter, ASBTNM; tr 18.6 5.9E+02 0.02 23.9 17.6 38 380-417 272-312 (332)
9 2zxe_G FXYD10, phospholemman-l 16.9 85 0.0029 22.9 2.5 18 399-416 25-42 (74)
10 2ks1_B Epidermal growth factor 13.0 2.1E+02 0.0073 18.6 3.4 24 399-422 21-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.86 E-value=4.7e-09 Score=90.03 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
.+++++++++|.+|.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46778889999999999999999999998 899999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.57 E-value=3e-07 Score=75.91 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208 346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~ 416 (468)
..++++.++++.++.+++++.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45677788999999999999999999888 899999999999999999999999999999999999887643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.49 E-value=2.2e-06 Score=70.70 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208 189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG 255 (468)
Q Consensus 189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~ 255 (468)
.++.+.+++++.+++++.|.+.+..+ ..+.|+++.+++. ++||++++.+++|+++++.|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788999999999999999998 7999999999999 8999999999999999999999986543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.24 E-value=3.7e-06 Score=71.93 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208 189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (468)
Q Consensus 189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~ 254 (468)
.++.+++++++.++++++|++.+..+ ..+.|+++.++++ +++|++++.+++|++++++||+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44567889999999999999999999 8999999999998 899999999999999999999998643
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=72.15 E-value=81 Score=31.27 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHH-------HhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHH
Q 012208 344 ALYTGIFSTGICLWIEIA-------AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406 (468)
Q Consensus 344 ll~lgv~~~~~~~~l~~~-------al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi 406 (468)
.+.+|+++.++.+....+ -++.-++.-+-.+-...=+++.+..-+ +....+..|++|.+.++
T Consensus 262 A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl-fa~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 262 AFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAIL-IVPGIAVAQLTGIGITL 330 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHH-HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHH-HccCCcHHHHHHHHHHH
Confidence 345677776666654321 245667766666666666666665543 33333556888887763
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=51.54 E-value=1.2e+02 Score=29.51 Aligned_cols=23 Identities=0% Similarity=-0.177 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHhccCCC
Q 012208 397 AGWIGAALVLGGSLLVQMYRSSS 419 (468)
Q Consensus 397 ~~~iG~~lIi~Gv~l~~~~~~~~ 419 (468)
..+.|.++++.|+.++.+.++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567888888887777655543
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=35.56 E-value=3.6e+02 Score=27.25 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH----HHHHHHHhcCchhhHHHHhhhhHHHHHHHH
Q 012208 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGY----FVEALGLLTSDAGRASFISLFTVIVVPLFD 226 (468)
Q Consensus 151 ~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~----~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~ 226 (468)
++.....+++..++.....+...---+|.+.... ++.+++...-+ ..+...+.....+-.+++-...-....+.+
T Consensus 123 ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~-li~~~l~~~vY~~~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a 201 (490)
T 3hd6_A 123 IVVGVENLINADFCVASVCVAFGAVLGKVSPIQL-LIMTFFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVT 201 (490)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHhhhHHHHHhccCceeecCceeeeHHHHHHHHHHH
Confidence 3444445666666665555444333333333332 22233222111 111112223444444555555555566666
Q ss_pred HHhcCcc---c----hhHHHHHHHHHHhhhhh
Q 012208 227 GMLGAII---P----AHTWFGVLISALGVGML 251 (468)
Q Consensus 227 ~~l~er~---~----~~~~~gi~l~l~Gv~li 251 (468)
+++++|- + ...--...++++|..++
T Consensus 202 ~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lL 233 (490)
T 3hd6_A 202 RILYRRNLEQSKERQNSVYQSDLFAMIGTLFL 233 (490)
T ss_dssp HHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHH
T ss_pred HhcCCcccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 6676441 1 11234566777777776
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=18.60 E-value=5.9e+02 Score=23.94 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCccc---hhhHHHHHHHHHHHHHHHhccC
Q 012208 380 LWGAGFAWFLLGERWS---TAGWIGAALVLGGSLLVQMYRS 417 (468)
Q Consensus 380 v~a~l~~~~llgE~~t---~~~~iG~~lIi~Gv~l~~~~~~ 417 (468)
-.++.++...|++.+. +..+-+..-.+.|.++..+.++
T Consensus 272 ~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~ 312 (332)
T 3zux_A 272 GLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAA 312 (332)
T ss_dssp HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666667777764332 1222333344455555555443
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=16.92 E-value=85 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012208 399 WIGAALVLGGSLLVQMYR 416 (468)
Q Consensus 399 ~iG~~lIi~Gv~l~~~~~ 416 (468)
++++++.++|++++...+
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 455666777777766544
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.99 E-value=2.1e+02 Score=18.62 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCc
Q 012208 399 WIGAALVLGGSLLVQMYRSSSPDK 422 (468)
Q Consensus 399 ~iG~~lIi~Gv~l~~~~~~~~~~~ 422 (468)
+++.+++.++++++..+++.++++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!