Query 012208
Match_columns 468
No_of_seqs 232 out of 1998
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 04:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 26.5 1.9E+02 0.014 24.9 17.4 27 259-286 60-86 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 18.6 2.5E+02 0.018 23.3 14.1 11 150-160 39-49 (417)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 17.2 60 0.0044 17.0 2.7 18 260-277 3-20 (27)
4 d1dfna_ g.9.1.1 (A:) Defensin 16.5 17 0.0012 19.6 0.4 9 37-45 1-9 (30)
5 d1skza1 g.3.15.1 (A:7-58) Fact 14.5 14 0.001 22.4 -0.4 16 31-46 13-28 (52)
6 d1t2ya_ g.46.1.1 (A:) Metallot 12.9 28 0.0021 17.9 0.6 8 37-44 2-9 (26)
7 d1pv7a_ f.38.1.2 (A:) Lactose 11.7 3.7E+02 0.027 22.0 12.0 21 371-391 143-163 (417)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 9.7 4.7E+02 0.035 21.9 21.9 15 355-369 361-375 (447)
9 d1iwga7 f.35.1.1 (A:7-37,A:331 8.1 1.9E+02 0.014 22.9 4.8 50 361-410 58-107 (199)
10 d1n1ua_ g.3.3.1 (A:) Kalata B1 7.5 47 0.0035 17.8 0.2 14 35-48 12-25 (29)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.54 E-value=1.9e+02 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012208 259 SVGDFLNFLSAIFFGIHMLRTERISRST 286 (468)
Q Consensus 259 ~~G~llallaa~~~a~~~v~~r~~~~~~ 286 (468)
..|.+..+ ..+.+++......++.++.
T Consensus 60 ~~g~~~s~-~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 60 DLGFALSG-ISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 35544333 2344444445555555543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=18.63 E-value=2.5e+02 Score=23.32 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=6.0
Q ss_pred cCCHHHHHHHH
Q 012208 150 IMHPASFCAVR 160 (468)
Q Consensus 150 ~~~p~~~~~~R 160 (468)
+.++.++..+-
T Consensus 39 g~s~~~~g~i~ 49 (417)
T d1pv7a_ 39 HISKSDTGIIF 49 (417)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46666654443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.17 E-value=60 Score=16.96 Aligned_cols=18 Identities=17% Similarity=0.347 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012208 260 VGDFLNFLSAIFFGIHML 277 (468)
Q Consensus 260 ~G~llallaa~~~a~~~v 277 (468)
+|.+.+-+++++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777788888888753
No 4
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.49 E-value=17 Score=19.55 Aligned_cols=9 Identities=56% Similarity=1.575 Sum_probs=7.3
Q ss_pred ccccccccc
Q 012208 37 DCTCSISSC 45 (468)
Q Consensus 37 ~~~~~~~~~ 45 (468)
||-|.|..|
T Consensus 1 dcycripac 9 (30)
T d1dfna_ 1 DCYCRIPAC 9 (30)
T ss_dssp CCEEESSCC
T ss_pred Cceeecchh
Confidence 788888877
No 5
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=14.51 E-value=14 Score=22.37 Aligned_cols=16 Identities=44% Similarity=0.841 Sum_probs=13.1
Q ss_pred eeEEeccccccccccc
Q 012208 31 WKIVTTDCTCSISSCC 46 (468)
Q Consensus 31 ~~~~~~~~~~~~~~~~ 46 (468)
-.|+|..||||--.|-
T Consensus 13 cniitdrctcsgvrcr 28 (52)
T d1skza1 13 CNIITDRCTCSGVRCR 28 (52)
T ss_dssp CCTTTCSSCBCCCSSC
T ss_pred ceeeccceeeccceEE
Confidence 4688999999988873
No 6
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=12.91 E-value=28 Score=17.94 Aligned_cols=8 Identities=63% Similarity=1.149 Sum_probs=5.3
Q ss_pred cccccccc
Q 012208 37 DCTCSISS 44 (468)
Q Consensus 37 ~~~~~~~~ 44 (468)
||.||-.|
T Consensus 2 dcgcsgas 9 (26)
T d1t2ya_ 2 DCGCSGAS 9 (26)
T ss_dssp CCSCSSTT
T ss_pred CcccCccc
Confidence 77777544
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.67 E-value=3.7e+02 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=9.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhC
Q 012208 371 TAIIYGLEPLWGAGFAWFLLG 391 (468)
Q Consensus 371 ~s~~~~l~pv~a~l~~~~llg 391 (468)
.........+.+.+++.++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 143 ARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccccccccccccc
Confidence 333444444455554444443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.73 E-value=4.7e+02 Score=21.95 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHHHHHHHhccCChh
Q 012208 355 CLWIEIAAMRDVSAT 369 (468)
Q Consensus 355 ~~~l~~~al~~~~a~ 369 (468)
....+....+..+..
T Consensus 361 ~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 361 VMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCHH
Confidence 334444555555543
No 9
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.13 E-value=1.9e+02 Score=22.90 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=34.6
Q ss_pred HHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 012208 361 AAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSL 410 (468)
Q Consensus 361 ~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~ 410 (468)
..++...+.....+.....++..+....++|..++.....+..++++...
T Consensus 58 l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 58 LFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp TTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 34566666666666666666666666778899999888777776665544
No 10
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=7.49 E-value=47 Score=17.81 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=10.4
Q ss_pred eccccccccccccc
Q 012208 35 TTDCTCSISSCCFN 48 (468)
Q Consensus 35 ~~~~~~~~~~~~~~ 48 (468)
|..|+||-.-|--|
T Consensus 12 tpgctcswpictrn 25 (29)
T d1n1ua_ 12 TPGATCSWPVCTRN 25 (29)
T ss_dssp STTCEEETTEEEET
T ss_pred CCCceeecceeccc
Confidence 56799998877544
Done!