Query 012209
Match_columns 468
No_of_seqs 184 out of 1280
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 00:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0659 SUL1 Sulfate permease 100.0 2.4E-52 5.1E-57 449.0 38.1 389 19-454 15-424 (554)
2 PRK11660 putative transporter; 100.0 1.9E-48 4E-53 423.0 40.8 381 20-446 24-447 (568)
3 TIGR00815 sulP high affinity s 100.0 2.7E-47 5.8E-52 413.6 35.9 386 19-446 8-426 (563)
4 KOG0236 Sulfate/bicarbonate/ox 100.0 2.4E-43 5.1E-48 386.7 32.3 382 27-444 78-493 (665)
5 PF00916 Sulfate_transp: Sulfa 100.0 1.3E-33 2.7E-38 280.7 12.3 258 118-410 1-279 (280)
6 COG2252 Xanthine/uracil/vitami 100.0 1.2E-28 2.5E-33 254.4 36.7 368 23-441 13-409 (436)
7 TIGR00843 benE benzoate transp 99.9 1.5E-24 3.3E-29 223.2 34.2 345 31-438 26-394 (395)
8 TIGR03173 pbuX xanthine permea 99.9 2.3E-23 4.9E-28 218.2 36.1 306 43-397 14-337 (406)
9 PF03594 BenE: Benzoate membra 99.9 1.4E-23 3E-28 212.8 32.5 346 29-437 8-377 (378)
10 TIGR00801 ncs2 uracil-xanthine 99.9 5.1E-21 1.1E-25 201.0 33.7 309 42-397 23-353 (415)
11 PRK10720 uracil transporter; P 99.9 2.8E-19 6.2E-24 188.3 33.7 345 42-443 32-409 (428)
12 COG3135 BenE Uncharacterized p 99.9 1.9E-19 4.2E-24 179.1 29.6 336 47-445 41-400 (402)
13 PF00860 Xan_ur_permease: Perm 99.8 3.5E-16 7.5E-21 163.2 29.9 324 59-425 40-383 (389)
14 TIGR03616 RutG pyrimidine util 99.8 2E-15 4.3E-20 159.2 34.6 289 54-397 54-364 (429)
15 COG2233 UraA Xanthine/uracil p 99.5 2.5E-11 5.4E-16 127.1 27.7 309 42-396 34-363 (451)
16 PRK11412 putative uracil/xanth 99.4 3.2E-09 6.8E-14 112.2 34.6 305 42-391 26-354 (433)
17 PF13792 Sulfate_tra_GLY: Sulf 98.8 1.2E-08 2.5E-13 83.9 6.9 70 19-92 9-80 (84)
18 TIGR00834 ae anion exchange pr 98.6 0.00023 5E-09 80.9 35.7 309 59-397 404-790 (900)
19 KOG1172 Na+-independent Cl/HCO 98.0 0.0038 8.1E-08 70.0 27.9 304 60-396 396-765 (876)
20 KOG1292 Xanthine/uracil transp 97.9 0.0035 7.6E-08 66.2 23.2 308 42-397 30-390 (510)
21 PF11840 DUF3360: Protein of u 97.1 0.093 2E-06 54.1 20.2 302 32-390 65-398 (492)
22 PF00955 HCO3_cotransp: HCO3- 96.4 0.0015 3.2E-08 70.5 2.2 101 56-157 65-172 (510)
23 PF02308 MgtC: MgtC family; I 77.7 29 0.00064 30.8 10.3 42 408-449 86-129 (134)
24 TIGR03173 pbuX xanthine permea 75.1 46 0.001 35.0 12.8 88 60-155 257-345 (406)
25 PF05437 AzlD: Branched-chain 72.4 7.8 0.00017 32.3 5.0 64 373-439 32-98 (99)
26 TIGR00801 ncs2 uracil-xanthine 70.8 33 0.00071 36.4 10.4 100 49-156 256-362 (415)
27 COG4392 Predicted membrane pro 70.2 24 0.00052 30.3 7.3 68 371-441 35-105 (107)
28 TIGR00815 sulP high affinity s 64.2 1.5E+02 0.0032 32.8 14.2 83 56-147 291-373 (563)
29 PRK10720 uracil transporter; P 58.0 32 0.0007 36.7 7.5 90 59-156 263-353 (428)
30 COG2233 UraA Xanthine/uracil p 56.6 26 0.00055 37.7 6.3 82 356-440 113-217 (451)
31 PRK11412 putative uracil/xanth 55.0 67 0.0015 34.4 9.2 90 60-156 279-368 (433)
32 TIGR00843 benE benzoate transp 53.0 61 0.0013 34.3 8.3 91 51-145 247-341 (395)
33 PF00916 Sulfate_transp: Sulfa 52.6 63 0.0014 31.7 8.1 82 56-146 179-260 (280)
34 PRK11660 putative transporter; 48.0 3.8E+02 0.0082 29.6 14.1 84 56-148 311-394 (568)
35 PF03594 BenE: Benzoate membra 47.8 1.5E+02 0.0032 31.3 10.0 88 53-145 233-325 (378)
36 TIGR03616 RutG pyrimidine util 46.1 1.8E+02 0.004 31.0 10.8 47 353-399 114-161 (429)
37 PF01384 PHO4: Phosphate trans 45.6 2.7E+02 0.0058 28.6 11.6 126 309-443 18-148 (326)
38 COG3333 Uncharacterized protei 42.9 1.6E+02 0.0035 31.8 9.4 41 118-159 150-191 (504)
39 PF07178 TraL: TraL protein; 40.6 70 0.0015 26.6 5.4 37 405-441 19-55 (95)
40 PF15179 Myc_target_1: Myc tar 38.0 60 0.0013 30.6 4.8 35 423-457 27-61 (197)
41 PF00860 Xan_ur_permease: Perm 32.6 5.9E+02 0.013 26.5 14.6 90 60-156 271-360 (389)
42 COG0733 Na+-dependent transpor 30.6 7.2E+02 0.016 26.8 12.1 66 267-335 204-270 (439)
43 PRK15034 nitrate/nitrite trans 27.4 1.2E+02 0.0025 32.9 5.7 52 27-79 400-457 (462)
44 KOG3142 Prenylated rab accepto 27.0 3.2E+02 0.007 25.9 7.9 59 376-435 85-156 (187)
45 PRK13707 conjugal transfer pil 26.8 1.5E+02 0.0032 25.2 5.1 37 405-441 25-61 (101)
46 COG3715 ManY Phosphotransferas 26.3 6.2E+02 0.013 25.4 10.1 25 374-398 167-197 (265)
47 COG3135 BenE Uncharacterized p 25.9 5.1E+02 0.011 27.3 9.6 103 40-146 224-341 (402)
48 TIGR00822 EII-Sor PTS system, 20.8 8.5E+02 0.019 24.3 10.4 15 131-145 29-43 (265)
No 1
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=448.96 Aligned_cols=389 Identities=20% Similarity=0.256 Sum_probs=296.0
Q ss_pred CCCchhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHH---HHh
Q 012209 19 NHRPGRRKHSLVSELSGAVGDLGTFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLFGLP-MPVQPMKSIAAV---AVS 94 (468)
Q Consensus 19 ~~~~~~~~~~~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~~~p-l~v~P~~aiaa~---~i~ 94 (468)
+..+.++|+|+.++++.++ ..+|++|||+.++|+||++|||++-+..++.+++.++| +..+|+++++.+ .++
T Consensus 15 ~~~~~~l~~Dl~AGltva~----valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~ 90 (554)
T COG0659 15 YYFRSWLRGDLLAGLTVAA----VALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIA 90 (554)
T ss_pred ccchhhhHHHHHHHHHHHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHH
Confidence 3345558888888888766 88999999999999999999999999999999988887 455676555544 333
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCcccc-----cc-CCC
Q 012209 95 ESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFAT-----SK-STS 168 (468)
Q Consensus 95 ~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~-----~~-~~~ 168 (468)
.....+++.+..+++++|++|+++|++|+|++ ++|+|+||+.||++|+|+.|+.+|++.++|.+.... .. ...
T Consensus 91 ~~~~~g~~~~~~~tllaGv~~i~~G~lRLG~l-i~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~ 169 (554)
T COG0659 91 SLVETGLALAFLATLLAGVFQILLGLLRLGRL-IRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFT 169 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHH
Confidence 11145677788899999999999999999998 999999999999999999999999999999853221 00 011
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHh
Q 012209 169 SRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIR 248 (468)
Q Consensus 169 ~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~ 248 (468)
.....++.++.+++.++++++. . +| +.+++|+.++++++++.+++.+
T Consensus 170 ~~~~~~~~~~~lg~~~l~il~~-~------------------------------~~--~~~~~P~~liaiv~~t~i~~~~ 216 (554)
T COG0659 170 VLLTINLATLLLGLLTLAILLF-L------------------------------PR--LTPRIPSPLIALVLGTLIVWIF 216 (554)
T ss_pred hcccccHHHHHHHHHHHHHHHH-c------------------------------cc--hhhhCCcHHHHHHHHHHHHHHh
Confidence 1111234477788888777652 1 22 2368999999999999999987
Q ss_pred cCCc--cCcc--ccCCCcccccCCChh--hhHHHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHhHH
Q 012209 249 DPTI--FNDL--RFGPSEISVLKITWD--DWKVGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSISVGVM 322 (468)
Q Consensus 249 ~~~~--~~~~--~~g~~~p~~~~p~~~--~~~~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a~Gla 322 (468)
+.+. .+++ .++...|.+..|+++ ++ ..++..++....+.++++......+.. .. +. +.|.|||+++||++
T Consensus 217 ~~~~~~~G~i~~~lp~~~~~~~~P~~~~~~~-~~l~~~al~la~lg~iesllta~~~~~-~~-~~-~~d~nrELiaqGia 292 (554)
T COG0659 217 PLDSLRYGEIPGSLPSGLPHFRLPNVSLSLL-LALLPYALALALLGLLESLLTAVSFDG-MT-GT-KHDSNRELIAQGIA 292 (554)
T ss_pred cCCchhcccCcccCCcCCCcccCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CC-CCCCCHHHHHhhHH
Confidence 6553 2322 122345555556543 33 233333333333334444433333332 22 22 79999999999999
Q ss_pred HHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHHh--
Q 012209 323 NFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMAS-- 400 (468)
Q Consensus 323 Nl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~~-- 400 (468)
|+++++|||+|.|++++||++|.++|||||+|++++|+++++++++++ |++++||+++|++++++++++|++..
T Consensus 293 Ni~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~----~~~~~IP~a~Laavli~v~~~l~~~~~~ 368 (554)
T COG0659 293 NIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLA----PLVSYIPLAALAAVLILVGWGLLDWSLL 368 (554)
T ss_pred HHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHH----HHHHhCcHHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999999999988888887 89999999999999999999998531
Q ss_pred ---hhcCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012209 401 ---RDMNTKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKLRSMECSRFGVSKF 454 (468)
Q Consensus 401 ---~~~~~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~~~~~~~~~~~~~~ 454 (468)
+++..|.|+.++++|++.+++ .|+..|+.+|++++.++..++..+.+....+.
T Consensus 369 ~~~~~~~~~~e~~v~~~t~~~tv~-~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~ 424 (554)
T COG0659 369 KPLLRKLPRGELLVLLTTALLTVF-FDLVIGVVVGILLACLLFIRRISRPSIVVLGR 424 (554)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHhhcc
Confidence 233578899998888888885 89999999999999999888776655533444
No 2
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.9e-48 Score=422.97 Aligned_cols=381 Identities=20% Similarity=0.252 Sum_probs=281.9
Q ss_pred CCchhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHHhcCCC
Q 012209 20 HRPGRRKHSLVSELSGAVGDLGTFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLFGLP-MPVQPMKSIAAVAVSESPH 98 (468)
Q Consensus 20 ~~~~~~~~~~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~~~p-l~v~P~~aiaa~~i~~~~~ 98 (468)
-++++++.|+.++++.++ +.+||+||||.++|+||++|+|++.+.+++.+++.+++ +.++|.++.+++......+
T Consensus 24 y~~~~l~~D~iAGltv~~----~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~ 99 (568)
T PRK11660 24 YTAARFTRDLIAGITVGI----IAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQ 99 (568)
T ss_pred CCHHhhhHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHH
Confidence 355667777777777665 88999999999999999999998888888888877765 6788987776654321124
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccc--------cCCCCC
Q 012209 99 LTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATS--------KSTSSR 170 (468)
Q Consensus 99 ~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~--------~~~~~~ 170 (468)
.+...+..+++++|++|+++|++|+|++ .+|+|+||+.||++|+|++|+.+|++.++|.+..... ..+.+.
T Consensus 100 ~~~~~~~~~~~l~Gii~~l~gllrlG~l-~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l 178 (568)
T PRK11660 100 FGLAGLLVATLMSGIILILMGLARLGRL-IEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQAL 178 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhh
Confidence 5566677789999999999999999986 9999999999999999999999999999998431100 011122
Q ss_pred CCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcC
Q 012209 171 PWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDP 250 (468)
Q Consensus 171 ~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~ 250 (468)
+..++.+..+++.+++++++. +| ..+++|..++++++++.+++.++.
T Consensus 179 ~~~~~~~~~~~~~~l~lll~~-------------------------------~~--~~~~iP~~li~iiv~t~~~~~~~~ 225 (568)
T PRK11660 179 PTINWGDALIGIVTLGVLILW-------------------------------PR--LKIRLPGHLPALLAGTAVMGVLNL 225 (568)
T ss_pred ccCCHHHHHHHHHHHHHHHHH-------------------------------Hh--hcccCchHHHHHHHHHHHHHHHhc
Confidence 333445778888888776532 21 234689999999999999887654
Q ss_pred Cc-----cCc------------cccCCCcccccCCCh----------hhhHHHHHHHhhhhHHHHHHHHHHHH--HHHhc
Q 012209 251 TI-----FND------------LRFGPSEISVLKITW----------DDWKVGFLRAAIPQIPLSVLNSVIAV--CKLSG 301 (468)
Q Consensus 251 ~~-----~~~------------~~~g~~~p~~~~p~~----------~~~~~~~l~~~l~~~~lt~~~svia~--~~l~~ 301 (468)
.. +++ +.+++..|.+..|.. .+|. .+.......+.++++..+... ....+
T Consensus 226 ~~~~v~~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~-~~~~ll~~a~~iaiv~~iesl~~~~~~~ 304 (568)
T PRK11660 226 LGGHVATIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWD-LIRALLPAAFSMAMLGAIESLLCAVVLD 304 (568)
T ss_pred cCCCceeecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 111 112223444433410 1332 111222222333333322221 11122
Q ss_pred ccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcC
Q 012209 302 DLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFP 381 (468)
Q Consensus 302 ~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP 381 (468)
+.. ++ +.|.|||++++|++|+++|+|||+|+|++++||++|+++|||||++++++|+++++..++++ |+++++|
T Consensus 305 ~~~-~~-~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~----~ll~~iP 378 (568)
T PRK11660 305 GMT-GT-KHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLA----PLLSYLP 378 (568)
T ss_pred Hhc-CC-CCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----HHHHhCc
Confidence 222 33 78999999999999999999999999999999999999999999999999999987777877 8999999
Q ss_pred hHHHHHHHHHHHHHHHHH-----hhhcCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 012209 382 IGILGVLLLFAGIELAMA-----SRDMNTKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKLRSMEC 446 (468)
Q Consensus 382 ~avLaaili~ag~~L~~~-----~~~~~~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~~~~~~ 446 (468)
+++|++++++++++|++. .|+..++.|+++++.|++.+++ +++.+|+.+|+++++++..++..+
T Consensus 379 ~~vLa~ili~~~~~m~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~gi~~Gi~~s~~~~~~~~~~ 447 (568)
T PRK11660 379 LSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVL-FDMVIAISVGIVLASLLFMRRIAE 447 (568)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999864 2333467899998888888885 799999999999999988876654
No 3
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=2.7e-47 Score=413.65 Aligned_cols=386 Identities=17% Similarity=0.200 Sum_probs=281.7
Q ss_pred CCCchhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHH---Hh
Q 012209 19 NHRPGRRKHSLVSELSGAVGDLGTFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLFGLP-MPVQPMKSIAAVA---VS 94 (468)
Q Consensus 19 ~~~~~~~~~~~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~~~p-l~v~P~~aiaa~~---i~ 94 (468)
+-++++++.|+.++++.++ +.+||+||||.++|+||.+|+|++.+..++.+++.++| +.++|.++++.+. +.
T Consensus 8 ~y~~~~l~~Di~aGltv~~----~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~ 83 (563)
T TIGR00815 8 HYRLKKFKGDLMAGLTVGI----LLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIA 83 (563)
T ss_pred hCCHHHhhhHHHHHHHHHH----HHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHH
Confidence 3456678888888888766 88999999999999999999999888888888877766 6778987766543 22
Q ss_pred cCC-CCC----H-HHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCcc-cc----
Q 012209 95 ESP-HLT----T-SQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDF-AT---- 163 (468)
Q Consensus 95 ~~~-~~~----~-~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~-~~---- 163 (468)
+.. +.+ + ..+...++++|++|+++|++|+|++ +||+|+||+.||++|+|+.|+.+|++.++|.+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l-~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~ 162 (563)
T TIGR00815 84 RVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFL-IEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTL 162 (563)
T ss_pred HhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChH
Confidence 221 111 2 2233568999999999999999997 9999999999999999999999999999998531 10
Q ss_pred ------ccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhh--hhcccchHHH
Q 012209 164 ------SKSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRL--RILSAIPAAL 235 (468)
Q Consensus 164 ------~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~iP~~L 235 (468)
...+.+.+-+++.++.+++.++++++... |.++|+ ++...+|..+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~---------------------------~~~~~~~~~~~~~~p~~l 215 (563)
T TIGR00815 163 GVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTK---------------------------KLGKRNKKLLFAPAVAPL 215 (563)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH---------------------------HhhhhccchhcccccHHH
Confidence 01122221113446778877776665321 111211 2334579999
Q ss_pred HHHHHHHHHHHHhcCCccCccccC---CCcccccCC--ChhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCcccc
Q 012209 236 VVFLLGLILCFIRDPTIFNDLRFG---PSEISVLKI--TWDDWKVGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREEL 310 (468)
Q Consensus 236 i~vvvg~~l~~~~~~~~~~~~~~g---~~~p~~~~p--~~~~~~~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~ 310 (468)
+++++++.+++.++.++.+....| ...|.+..| +|.++. ..+..++....+++++++........ .. + ++.
T Consensus 216 i~vi~~~~~~~~~~~~~~~~~~~g~ip~g~p~~~~~~~~~~~~~-~l~~~a~~ia~v~~~e~l~~a~~~~~-~~-~-~~~ 291 (563)
T TIGR00815 216 LVVILATLAVTIGLHKKQGVSILGHIPSGLSFFPPITLDWELLP-TLAPDAIAIAIVGLIESIAIARSFAR-MT-G-YKI 291 (563)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEeecCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-C-CCC
Confidence 999999988887654332111111 122333333 344442 23333332233333333322222222 22 2 489
Q ss_pred ccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHH
Q 012209 311 SATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLL 390 (468)
Q Consensus 311 ~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili 390 (468)
|+|||++++|++|+++++|||+|+|++++||++|+++|||||++++++++++++..++++ |+++++|+++|+++++
T Consensus 292 d~n~El~a~G~~N~~~~~fg~~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~----~~l~~iP~~~la~ili 367 (563)
T TIGR00815 292 DANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLT----PLFYYIPQAALAAIII 367 (563)
T ss_pred CCcHHHHHhhHHHHHHHHhCccCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH----HHHHhChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988878876 8999999999999999
Q ss_pred HHHHHHHHH-----hhhcCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 012209 391 FAGIELAMA-----SRDMNTKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKLRSMEC 446 (468)
Q Consensus 391 ~ag~~L~~~-----~~~~~~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~~~~~~ 446 (468)
+++++|++. .|+ .++.|++++++|++.+++ .++.+|+.+|++++++...++..+
T Consensus 368 ~~~~~l~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~Gi~vGv~~s~~~~~~~~~~ 426 (563)
T TIGR00815 368 SAVRGLIDYKELYKLWK-ADKMDFVVWLVTFFGVVF-TSIEIGLLVGVALSAAFLLLRIAR 426 (563)
T ss_pred HHHhcccCHHHHHHHHc-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998632 333 378899999999998886 699999999999999988887655
No 4
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=386.75 Aligned_cols=382 Identities=18% Similarity=0.211 Sum_probs=273.1
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcC--CcccchhHHHHHHHHH---hcC----C
Q 012209 27 HSLVSELSGAVGDLGTFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLFG--LPMPVQPMKSIAAVAV---SES----P 97 (468)
Q Consensus 27 ~~~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~~--~pl~v~P~~aiaa~~i---~~~----~ 97 (468)
+++..|+.+++..-.+.+||+||||.+||+||.||||++-+..++- .++| .++++||.+..+...- .+. .
T Consensus 78 ~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~~~iY-~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~ 156 (665)
T KOG0236|consen 78 EWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFPPLIY-AIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEA 156 (665)
T ss_pred hhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHHHHHh-eeccCCCcccccHHHHHHHHHHHHHHHHHhccC
Confidence 4444444444433338899999999999999999888655555443 4456 4788999765553321 111 1
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccc-c------
Q 012209 98 -----HLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATS-K------ 165 (468)
Q Consensus 98 -----~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~-~------ 165 (468)
....+.+...++++|++|++||++|+|++ ++|+|+|+++||+.|+|+.|+.+|+|.++|..+.... +
T Consensus 157 ~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl-~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~ 235 (665)
T KOG0236|consen 157 PSNDIATTIQVATTLTFLTGIIQLILGLLRLGFL-VRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVF 235 (665)
T ss_pred CCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChH-HHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEE
Confidence 13344556678999999999999999997 9999999999999999999999999999998633211 0
Q ss_pred ---CCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHH
Q 012209 166 ---STSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGL 242 (468)
Q Consensus 166 ---~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~ 242 (468)
......|..+.++.+++.+++++.... + . .++.++++++ -.+|..++++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~~k---~----------------~----~~~~~~k~~~-v~~~~~li~vIi~T 291 (665)
T KOG0236|consen 236 IVFDLLANLPKTLATLVLSLIFLVVLLLTK---E----------------L----NPKFKKKLFS-VPIPFELIVVIIGT 291 (665)
T ss_pred eeHHhhhcccccchhhhhHHHHHHHHHHHH---H----------------h----hhhhccccee-ecccHHHHHHHHHH
Confidence 001111111346778888877776432 0 0 1112233333 57889999999999
Q ss_pred HHHHHhcCCccCc-c---ccCCCcccccCCChhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHH
Q 012209 243 ILCFIRDPTIFND-L---RFGPSEISVLKITWDDWKVGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSIS 318 (468)
Q Consensus 243 ~l~~~~~~~~~~~-~---~~g~~~p~~~~p~~~~~~~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a 318 (468)
.+++.++.+.... . ....+.|....|.++.+. ......+....++++.. ++++...++.. | +++|.|||++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~-~~~~~~~~i~iva~~~~-iai~k~fa~~~-~-y~vd~nqELiA 367 (665)
T KOG0236|consen 292 LISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP-QVIPDAFAIAIVALLEH-IAIGKSFASLH-G-YKVDSNQELIA 367 (665)
T ss_pred HHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHh-C-CeeCCChHHHH
Confidence 9999876543111 1 222344555556554443 12222222222223333 45555544332 2 38999999999
Q ss_pred HhHHHHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHH
Q 012209 319 VGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAM 398 (468)
Q Consensus 319 ~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~ 398 (468)
+|++|++|+||+++|.|++++||++|+++|+||+++++++++++++.+++++ |+++++|+++|+++++.++..|..
T Consensus 368 lG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~----p~f~~iP~~vLaaIIi~a~~~~l~ 443 (665)
T KOG0236|consen 368 LGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLG----PLFYYIPKCVLAAIIISALIGMLI 443 (665)
T ss_pred HHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999999999999999999999999999988888877 899999999999999999999543
Q ss_pred H------hhhcCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 012209 399 A------SRDMNTKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKLRSM 444 (468)
Q Consensus 399 ~------~~~~~~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~~~~ 444 (468)
. .|+ .+|.|+++++.|++.+++ .++++|+++|+..+.+....+.
T Consensus 444 ~~~~~~~lwr-~~k~D~~~~~~t~~~~i~-~~ve~Glligv~~s~~~ii~~~ 493 (665)
T KOG0236|consen 444 QLEDLKPLWR-LSKIDLLIWVVTFFTTIF-LSLEIGLLIGVAFSLFFIILRS 493 (665)
T ss_pred hhhhhhhhee-CCHHHHHHHHHHhheeeE-ehhhhhHHHHHHHHHHHHHHHh
Confidence 2 343 489999999999999986 7999999999999887666543
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-33 Score=280.69 Aligned_cols=258 Identities=21% Similarity=0.284 Sum_probs=174.0
Q ss_pred HHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCcc---cc-ccCCCC----C-CCchhhHHHHHHHHHHHH
Q 012209 118 LGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDF---AT-SKSTSS----R-PWLGLDGLLLALTAILFL 188 (468)
Q Consensus 118 lGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~---~~-~~~~~~----~-~~~~~~~~~l~~~~l~~l 188 (468)
+|++|+|++ +||+|+||+.||++|+|+.|+.+|++.++|.++. +. ...+.. . +..++.+..+++.+++++
T Consensus 1 lGllrlG~l-~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRLGFL-VRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred CccccccHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 589999998 9999999999999999999999999999997521 11 001100 0 002344666776666665
Q ss_pred HHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCcc--Ccc-ccCCCcccc
Q 012209 189 VLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIF--NDL-RFGPSEISV 265 (468)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~--~~~-~~g~~~p~~ 265 (468)
..... .. + +++.|+.+.+|..++++++++.+++.+..+.. ... ......|.+
T Consensus 80 ~~~~~---------------~~-----~-----~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~ 134 (280)
T PF00916_consen 80 LIIRL---------------LP-----K-----RLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPP 134 (280)
T ss_pred hhhhh---------------hh-----h-----hccccccccccccceeeehhhhhhhhhhhccccccccccccccCccc
Confidence 43220 00 0 11123467799999999999998887643221 111 111234444
Q ss_pred cCCC-hhhhHHHHHHHhhhh-HHHHHHHHHHHHH--HHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhh
Q 012209 266 LKIT-WDDWKVGFLRAAIPQ-IPLSVLNSVIAVC--KLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGL 341 (468)
Q Consensus 266 ~~p~-~~~~~~~~l~~~l~~-~~lt~~~svia~~--~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srs 341 (468)
..|+ ..+|. .+...++. +.++++..+.... ...++.. + ++.|.|||++++|++|+++++|||+|+|++++||
T Consensus 135 ~~p~~~~~~~--~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~-~-~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs 210 (280)
T PF00916_consen 135 SLPSFDISWS--LILDLLPTALAIAIVGFIESLLIAKSIAKKT-G-YRIDPNQELIALGLANIVSGLFGGMPGSGSFSRS 210 (280)
T ss_pred cCcccccccc--cccccchhHHHHHHHHHHHHHHhhhhhcccc-c-ccCCcHHHHHHhhhccccchhhcccccccccccc
Confidence 4552 01221 11112222 2223332222111 1112222 3 4889999999999999999999999999999999
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHH-----hhhcCCcchHH
Q 012209 342 AGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMA-----SRDMNTKEESF 410 (468)
Q Consensus 342 a~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~-----~~~~~~~~~~~ 410 (468)
++|+++|||||+|+++++++++++.++++ |+++++|+++|++++++++++|++. .|+ .+|.|++
T Consensus 211 ~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~----~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~-~~~~d~~ 279 (280)
T PF00916_consen 211 AVNYRAGARTRLSGLISALFVLLVLLFLA----PLLAYIPKAVLAAILIVVGISLIDWSSLRRLWR-VSKADFL 279 (280)
T ss_pred hHHHhcCcceeehhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc-CChhheE
Confidence 99999999999999999999988777776 8999999999999999999998743 233 3677754
No 6
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=254.40 Aligned_cols=368 Identities=20% Similarity=0.263 Sum_probs=269.7
Q ss_pred hhhhhhHHhhhhhhhhhHHHHHHHHHHHH------HHhCCChhhHHHH----HHHHHHHHHHhcCCcccchh---HHHHH
Q 012209 23 GRRKHSLVSELSGAVGDLGTFIPIVLTLT------LVSNLDLSTTLIF----TSLYNIATGLLFGLPMPVQP---MKSIA 89 (468)
Q Consensus 23 ~~~~~~~~~el~g~l~~~~t~lP~~~a~a------~~aGlpp~~~l~~----~gl~~ii~g~~~~~pl~v~P---~~aia 89 (468)
++...++|+|+. ++++||+-++|... ..+|+|.++.+++ +++.++.|+++.|.|+..+| .|+..
T Consensus 13 ~~~~t~vrtEii---AGlTTFltM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~An~P~alapgmglnAfF 89 (436)
T COG2252 13 KEHGTTVRTEVI---AGLTTFLTMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGLNAFF 89 (436)
T ss_pred cccCchHHHHHH---HHHHHHHHHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhHHHHH
Confidence 445678999999 67788888887754 3579998876664 46778899999999999998 57888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcC----Cc-cccc
Q 012209 90 AVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFN----QD-FATS 164 (468)
Q Consensus 90 a~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~----~~-~~~~ 164 (468)
++.+....+++|++++++.|++|+++++++++|+++|+.|.+|+++..|+.+|+|++|...+++.. |. +. ....
T Consensus 90 aftvv~~~gi~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~-Givv~~~~tlv~L 168 (436)
T COG2252 90 AFTVVLGMGLSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNA-GIVVANPATLVAL 168 (436)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhC-CeEEecCcceEEe
Confidence 887777668999999999999999999999999999999999999999999999999999999932 32 11 1122
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHH-HHHHHHHH
Q 012209 165 KSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAAL-VVFLLGLI 243 (468)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~L-i~vvvg~~ 243 (468)
.++.++ .+++++.++++...+. .| ++++++ +.++..+.
T Consensus 169 G~~~~p------~vll~i~G~~l~~~L~-----------------------------~~------~i~Gaili~i~~~t~ 207 (436)
T COG2252 169 GDFTSP------GVLLAILGLLLIIVLV-----------------------------SR------KIKGAILIGILVTTI 207 (436)
T ss_pred ecCCCc------hHHHHHHHHHHHHHHH-----------------------------Hh------hccHhhhHHHHHHHH
Confidence 233332 3456666666555433 23 356666 45666667
Q ss_pred HHHHhcCCccC-c-cccCCCc-ccccCCChhh-hH-HHHHHHhhhhHHHHHH---HHHHHHHHHhcccCCCccccccchh
Q 012209 244 LCFIRDPTIFN-D-LRFGPSE-ISVLKITWDD-WK-VGFLRAAIPQIPLSVL---NSVIAVCKLSGDLFPDREELSATKV 315 (468)
Q Consensus 244 l~~~~~~~~~~-~-~~~g~~~-p~~~~p~~~~-~~-~~~l~~~l~~~~lt~~---~svia~~~l~~~l~~~~~~~~~n~e 315 (468)
+++..+..... + ....|+. |.+...++.+ .. .++....+..+...+. .+..++..-++-.+.|.+..+.+|.
T Consensus 208 ~g~~~g~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~a 287 (436)
T COG2252 208 LGIILGIDVHFGGLVGAPPSLSPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKA 287 (436)
T ss_pred HHHHhcccccccccccCCCCccchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchH
Confidence 88877643221 1 1111111 1111111111 00 0111122222221122 2334444444433333334588999
Q ss_pred HHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHH
Q 012209 316 SISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIE 395 (468)
Q Consensus 316 l~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~ 395 (468)
+.+.+++.++|+++|..|++ .+.+|++..+.|+||++++++.|+++++. +|+. |+++.+|..+.++.|+++|..
T Consensus 288 l~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~----Pl~~~vP~~AtapaLi~vG~l 361 (436)
T COG2252 288 LLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFS----PLAALVPGYATAPALIIVGAL 361 (436)
T ss_pred HHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHH----HHHHhCcHhhhhHHHHHHHHH
Confidence 99999999999999999998 68999999999999999999999999555 8877 899999999999999999999
Q ss_pred HHHHhhhcC--CcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012209 396 LAMASRDMN--TKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKL 441 (468)
Q Consensus 396 L~~~~~~~~--~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~ 441 (468)
|.+..++++ +..|.++.|+|.+.+.+++++..|+.+|++.|.+.+.
T Consensus 362 M~~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~k~ 409 (436)
T COG2252 362 MLSSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVILKV 409 (436)
T ss_pred HHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999887765 5679999999999999999999999999999999886
No 7
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.95 E-value=1.5e-24 Score=223.15 Aligned_cols=345 Identities=18% Similarity=0.243 Sum_probs=241.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHH
Q 012209 31 SELSGAVGDLGTFIPIVLTLTLVSNLDLS-------TTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQ 103 (468)
Q Consensus 31 ~el~g~l~~~~t~lP~~~a~a~~aGlpp~-------~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~ 103 (468)
+++.+.+-+.+.-+.+.+.-+...|+++. +..+.+|+.+++.+++||.|+..+|+...+++..+..+++++.|
T Consensus 26 aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~~~~~e 105 (395)
T TIGR00843 26 AGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPGISLNE 105 (395)
T ss_pred HHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCCCCHHH
Confidence 44444443333334555556677899986 23456799999999999999999999888887766556789999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHH
Q 012209 104 IAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALT 183 (468)
Q Consensus 104 ~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (468)
+.++.+++|++++++|++|.-+++.|+||+++..|+++|+.+.+...-++.+. +.+++ ...+
T Consensus 106 avGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~------------~~pll------~~~m 167 (395)
T TIGR00843 106 AIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALD------------GLFLI------CFSM 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHH------HHHH
Confidence 99999999999999999999999999999999999999999999877766542 11111 1111
Q ss_pred HHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccccCCCcc
Q 012209 184 AILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLRFGPSEI 263 (468)
Q Consensus 184 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~~g~~~p 263 (468)
.++++ . .|| +.+ .|..++++++|+.+++..+..+.++.......|
T Consensus 168 ll~~l---~-----------------------------~~r--~~P-r~avl~aLlvG~iva~~~G~~~~~~~~~~l~~p 212 (395)
T TIGR00843 168 LLCWL---A-----------------------------SKA--FAP-RYAMIAALICGIAFSFALGDMNPTDLDFKIALP 212 (395)
T ss_pred HHHHH---H-----------------------------HHH--hcc-hHHHHHHHHHHHHHHHHhcCCCccccccccccc
Confidence 11111 1 122 222 278889999999998876543322332223456
Q ss_pred cccCCChhhhHHHHHHHhhhhHHHHHHHHH-HHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhh
Q 012209 264 SVLKITWDDWKVGFLRAAIPQIPLSVLNSV-IAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLA 342 (468)
Q Consensus 264 ~~~~p~~~~~~~~~l~~~l~~~~lt~~~sv-ia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa 342 (468)
.+..|+| || .+.+...+|++.+++.+.. -++..+.. ..+ +.+.|+.+.+.|++|+++++||+++.|-...-.+
T Consensus 213 ~~~~P~f-s~-~a~~~l~lPl~~vtm~~qnlpgiavl~a--aGy--~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaA 286 (395)
T TIGR00843 213 QFIAPDF-SF-AHSLNLALPLFLVSLAGQFAPGIAALKA--AGY--NAPAKPIIAAAGLAALFAAFAGGISIGIAAITAA 286 (395)
T ss_pred eeeCCCC-CH-HHHHHHHHHHHHHHHHhcCchHHHHHHH--cCC--CCCchHHHHHHHHHHHHHhccCCchhhhhHHhHH
Confidence 6777777 45 4678889999888776542 22322222 112 4567889999999999999999999332222111
Q ss_pred -----hhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHHh--------hhcCCcchH
Q 012209 343 -----GQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMAS--------RDMNTKEES 409 (468)
Q Consensus 343 -----~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~~--------~~~~~~~~~ 409 (468)
-.|+.++|++.+++.+|++++++.++.+ .+..++..+|++...++ +|+.|+... ++.+.|+..
T Consensus 287 ic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag-~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a 362 (395)
T TIGR00843 287 ICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAG-AITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAA 362 (395)
T ss_pred HhcCcccccCcCccchHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 2345599999999999999999999865 67889999999999875 888886432 222234444
Q ss_pred HHHHHHHHHHH--HHh-hHHHHHHHHHHHHHH
Q 012209 410 FVMLVCAAVSL--TGS-SAALGFCCGILLFLL 438 (468)
Q Consensus 410 ~v~~~t~~~tl--~~~-~i~~Gi~vGi~~~~~ 438 (468)
++.|+++...+ ++. +..||+++|++.+.+
T Consensus 363 ~~tflvtaSg~~~~gigaafWgl~~G~~~~~~ 394 (395)
T TIGR00843 363 LIAFLATASGLHFLGIGSAFWGLCAGGLAYFI 394 (395)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHHHh
Confidence 55555555533 222 579999999887764
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.94 E-value=2.3e-23 Score=218.24 Aligned_cols=306 Identities=17% Similarity=0.108 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHHHh-----cCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 012209 43 FIPIVLTLTLVSNLDL-------STTLIFTSLYNIATGLL-----FGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLC 110 (468)
Q Consensus 43 ~lP~~~a~a~~aGlpp-------~~~l~~~gl~~ii~g~~-----~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll 110 (468)
..|..++ ...|+|+ ++.++.+|+.+++..+. .|.|+..+|..+..+..+....+.+++++.++.++
T Consensus 14 ~~p~i~~--~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v 91 (406)
T TIGR03173 14 AVPLIVG--GALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIV 91 (406)
T ss_pred HHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3565544 3469998 46777889999998632 37899889876666544433336789999999999
Q ss_pred HHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 012209 111 TAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVL 190 (468)
Q Consensus 111 ~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l 190 (468)
+|++++++|. +.++ +.|++|+.|+..++..+|+.+.-.+++...|... ..++.+++.+.+++.+++++++
T Consensus 92 ~Gii~illg~-~~~~-l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~--------~~~~~~~~~~~l~l~~l~~~il 161 (406)
T TIGR03173 92 AGLFVILLAP-FFSK-LVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG--------APDFGSPQNLGLALLTLVIILL 161 (406)
T ss_pred HHHHHHHHHH-HHHH-HHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC--------cccccchHHHHHHHHHHHHHHH
Confidence 9999999993 5544 5999999888888899999999888887754321 1111122244566666655543
Q ss_pred HhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccc-cC-CCcc---cc
Q 012209 191 TTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLR-FG-PSEI---SV 265 (468)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~-~g-~~~p---~~ 265 (468)
.. |+.|...+.|+.++++++++++++.++..+..++. .+ ...| .+
T Consensus 162 ~~------------------------------~~~~~~~~~~aiLi~ivvg~iva~~~g~~~~~~i~~~~~~~~P~~~~~ 211 (406)
T TIGR03173 162 LN------------------------------RFGKGFLRSIAVLLGLVVGTIVAAALGMVDFSGVAEAPWFALPTPFHF 211 (406)
T ss_pred HH------------------------------HHhhhHHHHhHHHHHHHHHHHHHHHhcCCCchhhccCCeeeCCCCCcC
Confidence 22 11112335689999999999999987643322111 00 0112 13
Q ss_pred cCCChhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhh-hhh
Q 012209 266 LKITWDDWKVGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGL-AGQ 344 (468)
Q Consensus 266 ~~p~~~~~~~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srs-a~n 344 (468)
..|++ ||. .+...+....+++.+++.......+..+.|.++.+.|||+.++|++|+++++||++|.|+ ++++ +.+
T Consensus 212 ~~P~f-~~~--~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~ 287 (406)
T TIGR03173 212 GAPTF-DLV--AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLV 287 (406)
T ss_pred CCCee-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHH
Confidence 34444 342 221222222233344332222222111111124567899999999999999999999986 5665 567
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHH
Q 012209 345 YRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELA 397 (468)
Q Consensus 345 ~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~ 397 (468)
...|+|||.+++++|++++++.++ |.+.++++++|.++++++++ +.+.++
T Consensus 288 ~~tg~~sr~~~~~~~~~lil~~l~--~~~~~l~~~iP~~vlgg~~l-~~~~~i 337 (406)
T TIGR03173 288 QLTGVKSRYVVAAAGVILVLLGLF--PKLAALVASIPQPVLGGAGL-VMFGMV 337 (406)
T ss_pred HHhCCCchHhHHHHHHHHHHHHHH--HHHHHHHHhCCHHHHHHHHH-HHHHHH
Confidence 778999999999999999777666 23448999999999999665 355554
No 9
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.93 E-value=1.4e-23 Score=212.75 Aligned_cols=346 Identities=20% Similarity=0.278 Sum_probs=250.2
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhCCChhh-------HHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCH
Q 012209 29 LVSELSGAVGDLGTFIPIVLTLTLVSNLDLST-------TLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTT 101 (468)
Q Consensus 29 ~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~-------~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~ 101 (468)
+.+++...+-+.+--+.+.+.-+..+|.++.. ..+..|+.++..+++||.|+..+|+...+++.++..+++++
T Consensus 8 ~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~~~~~ 87 (378)
T PF03594_consen 8 VSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLPGYSF 87 (378)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhccCCCH
Confidence 33444444433333345566667789999873 23466899999999999999999998988888777678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHH
Q 012209 102 SQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLA 181 (468)
Q Consensus 102 ~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~ 181 (468)
.|+.++.+++|++.++.|++|+-++++|+||.|+..+|++|+-+.+.++-++.+- +.+++ .+
T Consensus 88 ~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~------------~~P~l------~~ 149 (378)
T PF03594_consen 88 AEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQ------------ADPLL------VG 149 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHH------HH
Confidence 9999999999999999999999999999999999999999999999988887652 22322 33
Q ss_pred HHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccccCCC
Q 012209 182 LTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLRFGPS 261 (468)
Q Consensus 182 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~~g~~ 261 (468)
.+.+++++ . || +.+|. ..+.+++.+..++...+..+..+......
T Consensus 150 ~ml~~~l~--~------------------------------~r--~~pr~-av~~al~~g~~~a~~~g~~~~~~~~~~~~ 194 (378)
T PF03594_consen 150 PMLAVFLL--A------------------------------RR--FSPRY-AVLAALVAGVAVAALTGQLHPSALQLSLA 194 (378)
T ss_pred HHHHHHHH--H------------------------------HH--Hcchh-HHHHHHHHHHHHHHhcCCCCccccccccc
Confidence 33344443 2 21 22334 35556666777666654322222333345
Q ss_pred cccccCCChhhhHHHHHHHhhhhHHHHHHH-HHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhh
Q 012209 262 EISVLKITWDDWKVGFLRAAIPQIPLSVLN-SVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGG 340 (468)
Q Consensus 262 ~p~~~~p~~~~~~~~~l~~~l~~~~lt~~~-svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~sr 340 (468)
.|.+..|.|+ | .++++..+|.+.+++.+ .+-++..+.+.- ++.+.|+.+...|++|++.++|||++.|-+..-
T Consensus 195 ~p~~~~P~Fs-~-~a~v~lalPL~ivtmasQnlpG~aVL~a~G----Y~~p~~~~~~~tGl~s~l~ApfGg~~~nlAait 268 (378)
T PF03594_consen 195 HPVFTTPEFS-W-SALVSLALPLFIVTMASQNLPGIAVLRAAG----YQPPVNPLITVTGLASLLAAPFGGHAVNLAAIT 268 (378)
T ss_pred eeEEECCccc-H-HHHHHHHHHHHHHHHHhcchHHHHHHHHcC----CCCCchHHHHHHHHHHHHHhhhchhhhHHHHHH
Confidence 6778888885 6 47889999988776653 344555554432 378889999999999999999999999977555
Q ss_pred hhhh--h---cCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHHh--------hhcCCcc
Q 012209 341 LAGQ--Y---RFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMAS--------RDMNTKE 407 (468)
Q Consensus 341 sa~n--~---~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~~--------~~~~~~~ 407 (468)
.+.. . +.-.|.+.+++++|++++++.+|. +.++.++..+|++.++++ +|+.|+... ++.+.|+
T Consensus 269 aAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a-~~~v~l~~~lP~~li~~l---AGLALlg~l~~sl~~A~~~~~~r~ 344 (378)
T PF03594_consen 269 AAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFA-AALVALFAALPPALIAAL---AGLALLGTLGGSLQTAFSDEKYRE 344 (378)
T ss_pred HHHHcCCccCCCcccchHHHHHHhHHHHHHHHHH-HHHHHHHHhCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhH
Confidence 5543 2 334899999999999999999885 578899999999999865 888886432 2222355
Q ss_pred hHHHHHHHHHHH--HHHh-hHHHHHHHHHHHHH
Q 012209 408 ESFVMLVCAAVS--LTGS-SAALGFCCGILLFL 437 (468)
Q Consensus 408 ~~~v~~~t~~~t--l~~~-~i~~Gi~vGi~~~~ 437 (468)
.+++.|+++... +++. +..||+++|++++.
T Consensus 345 aAlvtFlvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 345 AALVTFLVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 555555555553 3322 58999999999875
No 10
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.90 E-value=5.1e-21 Score=200.98 Aligned_cols=309 Identities=16% Similarity=0.198 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHHHhcCC----cccchhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 012209 42 TFIPIVLTLTLVSNLDLS-------TTLIFTSLYNIATGLLFGL----PMPVQPMKSIAAVAVSESPHLTTSQIAAAGLC 110 (468)
Q Consensus 42 t~lP~~~a~a~~aGlpp~-------~~l~~~gl~~ii~g~~~~~----pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll 110 (468)
+..|..++-+. ++++ +.++.+|+.+++.+++.+. |...++.-+..+..+....+.+++++.++.++
T Consensus 23 i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~ 99 (415)
T TIGR00801 23 VLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIA 99 (415)
T ss_pred HHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45788877665 5554 4566789999999887664 44445553444433333236789999999999
Q ss_pred HHHHHHHHHHh--hh-HHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHH
Q 012209 111 TAATLFLLGLT--GL-MSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILF 187 (468)
Q Consensus 111 ~Gvi~lllGl~--rl-g~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 187 (468)
+|+++++++.+ |+ .+++.|++|+.|...+..++|+.++..+++.+.|....+. +.++-++..+.+++.+++.
T Consensus 100 ~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~-----~~~~~~~~~~~vg~~~l~~ 174 (415)
T TIGR00801 100 TGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMS-----SATYGSLENLGVAFVVLAL 174 (415)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccc-----ccccCchhhHHHHHHHHHH
Confidence 99999999985 54 4677999999999999999999999999998865422100 1112122345677777765
Q ss_pred HHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccc-cC-CCcccc
Q 012209 188 LVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLR-FG-PSEISV 265 (468)
Q Consensus 188 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~-~g-~~~p~~ 265 (468)
+++.. |+.|...|.|+.++++++++++++.++..+..++. .+ ...|.+
T Consensus 175 ~vl~~------------------------------~~~~g~~~~~aiLigiv~g~i~a~~lg~~~~~~v~~~~~~~lP~~ 224 (415)
T TIGR00801 175 IILLN------------------------------RFGKGFLKSISILIGILVGYILALFMGIVDFSPVIDAPWFSLPTP 224 (415)
T ss_pred HHHHH------------------------------HHHhhHHHHHHHHHHHHHHHHHHHHcCCccchhhccCcccccCCc
Confidence 54322 11122234589999999999999987653322221 10 122333
Q ss_pred cCC--ChhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc--ccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhh
Q 012209 266 LKI--TWDDWKVGFLRAAIPQIPLSVLNSVIAVCKLSG--DLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGL 341 (468)
Q Consensus 266 ~~p--~~~~~~~~~l~~~l~~~~lt~~~svia~~~l~~--~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srs 341 (468)
..| +| || ..+...++...+.+.++........+ +.+.|+ +.+.||++.++|++|+++++||++|.+.+..+.
T Consensus 225 ~~~g~~f-~~--~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~-~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~ 300 (415)
T TIGR00801 225 FTFGPSF-EW--PAILTMLPVAIVSLVESIGDITATADVSGRDLSG-DPRLHRGVLADGLATLLAGLFGGFPNTTFAQNI 300 (415)
T ss_pred cCCCcee-cH--HHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCC-CccccchHHHhhHHHHHHHhcCCCCCcchhhhh
Confidence 223 22 23 23333333333334444322222222 122222 456789999999999999999999999977777
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHHHHH--hccchhhHhhhcChHHHHHHHHHHHHHHH
Q 012209 342 AGQYRFGARSGMAVVFLGLGKLAIGLV--FGNSFMRILGQFPIGILGVLLLFAGIELA 397 (468)
Q Consensus 342 a~n~~~GarT~la~vv~g~~~ll~~L~--~~~~~~~ll~~iP~avLaaili~ag~~L~ 397 (468)
.++...|.++|.+.+++|++++++.++ ++ +++.++|.+++|++++ +.+.++
T Consensus 301 g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~----~l~~~iP~~vlgg~~l-~~~~~i 353 (415)
T TIGR00801 301 GVIALTRVASRWVIVGAAVILIALGFFPKIA----ALITSIPSPVLGGASI-VMFGMI 353 (415)
T ss_pred eeeeecCCCchHHHHHHHHHHHHHHHHHHHH----HHHHhCCHHHHHHHHH-HHHHHH
Confidence 889999999999999999999777777 55 8999999999999887 444443
No 11
>PRK10720 uracil transporter; Provisional
Probab=99.87 E-value=2.8e-19 Score=188.32 Aligned_cols=345 Identities=14% Similarity=0.160 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhc--CCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 012209 42 TFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLF--GLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLG 119 (468)
Q Consensus 42 t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~--~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllG 119 (468)
...|+.+ |+++...++.+|+.+++=.+.. +.|+..+|.-+..+..+... ..+++++.++.+++|+++++++
T Consensus 32 i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~-~~~~~~~lgav~v~Glv~ills 104 (428)
T PRK10720 32 VLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL-PLGYEVALGGFIMCGVLFCLVA 104 (428)
T ss_pred HHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHH
Confidence 4467744 8999999999999999865433 67877777544332222111 2479999999999999999999
Q ss_pred Hh--hh-HHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHhccCC
Q 012209 120 LT--GL-MSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVLTTGSGD 196 (468)
Q Consensus 120 l~--rl-g~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~ 196 (468)
.+ |+ .+++.|++|+.|+..+++.+|+.++-..++.. |... . .....+...+.+++.+++++++...
T Consensus 105 ~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~-g~~~--~-----~~~~~~~~~~~lalv~l~iil~~~~--- 173 (428)
T PRK10720 105 LIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMA-GLLP--A-----EGQTPDSKTIIISMVTLAVTVLGSV--- 173 (428)
T ss_pred HHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhc-cccC--C-----CCcccchHHHHHHHHHHHHHHHHHH---
Confidence 98 43 45668999999999999999999987766532 2210 0 0011112245677777766654220
Q ss_pred CCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccc-cC-CCcccccCCChhhhH
Q 012209 197 YGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLR-FG-PSEISVLKITWDDWK 274 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~-~g-~~~p~~~~p~~~~~~ 274 (468)
..| ++.+++| .++++++++++++.++..+...+. .. ...|.+..|+| ||.
T Consensus 174 ------------------------~~k--g~~~~~~-iLigIvvG~ila~~lG~~d~~~v~~a~~~~lP~~~~P~f-d~~ 225 (428)
T PRK10720 174 ------------------------LFR--GFLAIIP-ILIGVLVGYALSFAMGMVDTTPIIEAHWFALPTFYTPRF-EWF 225 (428)
T ss_pred ------------------------Hhc--cHHHHhH-HHHHHHHHHHHHHHhcCCCHHHhhcCccccCCCCCCCcC-cHH
Confidence 012 1233445 699999999999987653322221 10 13444555555 342
Q ss_pred HHHHHHhhhhHHHHHHHHHH---HHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcc
Q 012209 275 VGFLRAAIPQIPLSVLNSVI---AVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARS 351 (468)
Q Consensus 275 ~~~l~~~l~~~~lt~~~svi---a~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT 351 (468)
..+ ..++.....+.+++. ++....++ +..+ +.+.||++.++|++|+++++||++|.+. .+-|...+++|
T Consensus 226 -~il-~l~~~~lv~~~EsiG~~~a~~~~~~~-~~~~-~~~~~r~l~adGlatii~glfG~~p~tt----y~en~g~ia~T 297 (428)
T PRK10720 226 -AIL-TILPAALVVIAEHVGHLVVTANIVKK-DLLR-DPGLHRSMFANGLSTVISGFFGSTPNTT----YGENIGVMAIT 297 (428)
T ss_pred -HHH-HHHHHHHHHHHHHHHHHHHHHHhhCC-CCCC-CccccchHhhhhHHHHHHHhcCCCCccc----cccccceeeec
Confidence 222 222322222333322 22222211 1112 4578999999999999999999999986 34456677788
Q ss_pred hhHHHH----HHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHH-----Hh--hhcC--CcchHHHHHHH---
Q 012209 352 GMAVVF----LGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAM-----AS--RDMN--TKEESFVMLVC--- 415 (468)
Q Consensus 352 ~la~vv----~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~-----~~--~~~~--~~~~~~v~~~t--- 415 (468)
+.++-. +|+++ ++.-+ -|.+.+++..+|.+++|++.+ +.+.++. .. ++.+ +++..++.-+.
T Consensus 298 ~v~sr~v~~~a~~~l-i~lg~-~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~ 374 (428)
T PRK10720 298 RVYSTWVIGGAAIIA-ILLSC-VGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILII 374 (428)
T ss_pred ccchhHHHHHHHHHH-HHHHH-HHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHH
Confidence 877766 44444 33333 245568999999999999887 5566642 22 2222 22222211111
Q ss_pred -------HHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 012209 416 -------AAVSLTGSSAALGFCCGILLFLLLKLRS 443 (468)
Q Consensus 416 -------~~~tl~~~~i~~Gi~vGi~~~~~l~~~~ 443 (468)
.+..++..++..|..+|+++++++..|+
T Consensus 375 g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~ 409 (428)
T PRK10720 375 GVSGAKVNIGAAELKGMALATIVGIGLSLIFKLIS 409 (428)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccc
Confidence 1112223478899999999999877543
No 12
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.9e-19 Score=179.13 Aligned_cols=336 Identities=19% Similarity=0.277 Sum_probs=237.4
Q ss_pred HHHHHHHhCCChhhH-------HHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 012209 47 VLTLTLVSNLDLSTT-------LIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLG 119 (468)
Q Consensus 47 ~~a~a~~aGlpp~~~-------l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllG 119 (468)
.+.-++.+|.+|..+ .+.+|+.++...+.||.|+..+|....+++..+...+++..|+.++.+.+|+++++.|
T Consensus 41 i~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~yR~Pv~~aWSTPG~all~asl~g~s~~eaVGAfiVt~~li~l~G 120 (402)
T COG3135 41 IIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLRYRVPVLTAWSTPGAALLVASLGGLSFAEAVGAFIVTGALIILCG 120 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccceeeeecCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 334456788888632 2356888888899999999999988888887777679999999999999999999999
Q ss_pred HhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCC
Q 012209 120 LTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGT 199 (468)
Q Consensus 120 l~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~ 199 (468)
++|.-.++++-||.++-.+|.+|+-+.+.++.++.+ ...+++ .....+.+++. .
T Consensus 121 ~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~------------~~~p~l------~lpmv~~~ll~-r------- 174 (402)
T COG3135 121 LTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKAL------------PTQPLL------VLPMVLAYLLA-R------- 174 (402)
T ss_pred hhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcc------------CCChHH------HHHHHHHHHHH-H-------
Confidence 999999999999999999999999999999888765 223332 22222333321 1
Q ss_pred CCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccccCCCcccccCCChhhhHHHHHH
Q 012209 200 HNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLRFGPSEISVLKITWDDWKVGFLR 279 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~~g~~~p~~~~p~~~~~~~~~l~ 279 (468)
.+.+| +....++++|..++...+.-+..+...-++.|.+..|+|+ | .++++
T Consensus 175 --------------------~f~pr-------~aV~aalvvgv~va~~~G~~~~~~~~~~~~~p~~v~P~Fs-~-~A~l~ 225 (402)
T COG3135 175 --------------------VFAPR-------YAVIAALVVGVLVAALLGDLHTALVALEISTPTWVTPEFS-F-AAMLS 225 (402)
T ss_pred --------------------HcCch-------HHHHHHHHHHHHHHHHhCcccccccccccCcceeeCCccc-H-HHHHH
Confidence 11222 3555566677777766542211222222466778888875 5 47888
Q ss_pred HhhhhHHHHHHH-HHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhh-----hhcCCCcchh
Q 012209 280 AAIPQIPLSVLN-SVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAG-----QYRFGARSGM 353 (468)
Q Consensus 280 ~~l~~~~lt~~~-svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~-----n~~~GarT~l 353 (468)
+++|...+++.. ..-++.. +..+.++.+++..+.+-|+..+.+++||++.+|-...--+. .|..-+|.+.
T Consensus 226 lalPL~lvtmasQN~pGiAv----Lka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD~~rry~ 301 (402)
T COG3135 226 LALPLFLVTMASQNLPGIAV----LKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPDPARRYT 301 (402)
T ss_pred HhHHHHHHHHHhccCcccee----ehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCChHHHHH
Confidence 888876544331 0111111 11122578889999999999999999999999966443333 2356789999
Q ss_pred HHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHH--------hhhcCCcchHHHHHHHHHHH--HHHh
Q 012209 354 AVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMA--------SRDMNTKEESFVMLVCAAVS--LTGS 423 (468)
Q Consensus 354 a~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~--------~~~~~~~~~~~v~~~t~~~t--l~~~ 423 (468)
+++++|.+.+++.+|- +.++.++..+|++.+..+ +|+.|+.. .++-+.|+.+.+.|+++... +++.
T Consensus 302 Aa~~agi~ylv~GlF~-~~~~~l~~alP~~li~~l---AGLALlg~~~~~l~~A~~~~~~R~aAlvtF~VTaSG~tl~GI 377 (402)
T COG3135 302 AALVAGIFYLLAGLFG-GALVGLMAALPASLIAAL---AGLALLGTLGNSLQAALKDEREREAALVTFLVTASGLTLFGI 377 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCcHHHHHHH---HHHHHHHHHHHHHHHHhcCcccchhhhhheeehhccceeecc
Confidence 9999999999999885 578899999999988754 88888643 22223455555556555553 3322
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhh
Q 012209 424 -SAALGFCCGILLFLLLKLRSME 445 (468)
Q Consensus 424 -~i~~Gi~vGi~~~~~l~~~~~~ 445 (468)
+..||++.|...+.+..+|+.+
T Consensus 378 gaafWGLvaG~~~~~L~~~~~~~ 400 (402)
T COG3135 378 GAAFWGLVAGLLVLALLNLRRRE 400 (402)
T ss_pred cHHHHHHHHHHHHHHHHhhhhcc
Confidence 5799999999999887666554
No 13
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.77 E-value=3.5e-16 Score=163.24 Aligned_cols=324 Identities=22% Similarity=0.241 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccchh---HHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 012209 59 STTLIFTSLYNIATGLLFGLPMPVQP---MKSIAAVAVSES----PHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFI 131 (468)
Q Consensus 59 ~~~l~~~gl~~ii~g~~~~~pl~v~P---~~aiaa~~i~~~----~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~I 131 (468)
++.++.+|+.+++.+++.|.|+++.| .+.+.+..+... .+.+++++.++.+++|+++++++++++++++.|++
T Consensus 40 ~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~ 119 (389)
T PF00860_consen 40 SATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLF 119 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH-
T ss_pred HHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHh
Confidence 45677889999999998887776654 333443333321 14578889999999999999999999998889999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCC
Q 012209 132 PLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDD 211 (468)
Q Consensus 132 p~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 211 (468)
|+.|..++..++|+.+....++...+...... .......+...++...+++.+....+
T Consensus 120 pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 177 (389)
T PF00860_consen 120 PPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPD-----GLLVGDGKNLGLAVLTLLFILLLSLF----------------- 177 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTSS---BT-----T-B---HHHHHHHHHHHHHHHHHHHS-----------------
T ss_pred ChhheEeeEeeehhhhhhhHhhcccccccccc-----ccccccccccccccccchhhhhhhhh-----------------
Confidence 99999999999999999999998765521100 00111112233333333333322210
Q ss_pred CccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCc-cccCC--Ccc---cccCCChhhhHHHHHHHhhhhH
Q 012209 212 VNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFND-LRFGP--SEI---SVLKITWDDWKVGFLRAAIPQI 285 (468)
Q Consensus 212 ~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~-~~~g~--~~p---~~~~p~~~~~~~~~l~~~l~~~ 285 (468)
.++ ..+.-+.++.++++.++++..+..+.+. +.-.+ ..| ++..|.+ ++ ..+...+...
T Consensus 178 ---------~~~----~~~~~ailigi~~g~i~~~~~g~~~~~~~~~~~~~~~~p~~~~~g~p~f-~~--~~i~~~~~~~ 241 (389)
T PF00860_consen 178 ---------LKG----FLRKGAILIGIIAGWIVAAILGVVDFSPSVSSAPWFSLPSPFPFGWPSF-DP--GAILTFLIFA 241 (389)
T ss_dssp ---------SST----TTTTHHHHHHHHHHHHHHHHHHHTTSSH-HHHS-SS---------------H--HHHHHHTHHH
T ss_pred ---------hhh----hcccccchhhhhhhhhhhhcccccccCcccccccccccccccccccccc-cH--HHHHHHHHHH
Confidence 011 1122356678888888888765222222 21111 112 1222222 12 2332333222
Q ss_pred HHHHHHHH---HHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhh-cCCCcchhHHHHHHHH
Q 012209 286 PLSVLNSV---IAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQY-RFGARSGMAVVFLGLG 361 (468)
Q Consensus 286 ~lt~~~sv---ia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~-~~GarT~la~vv~g~~ 361 (468)
.....+++ .++....++ +.++ +.+.+|-+.++|++|+++++||++|.+. ++++.... ..|.++|.++..++++
T Consensus 242 lv~~~es~G~~~a~~~~~~~-~~~~-~~~~~r~l~~dg~~~~l~gl~G~~~~t~-~~en~g~i~~t~v~Sr~~~~~a~~~ 318 (389)
T PF00860_consen 242 LVAMFESIGTIVAVARIAGK-DDPR-PPRIRRGLLADGLGTILAGLFGTSPTTT-YSENAGGIAATGVASRRVGLTAGVI 318 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--TCC-CCCHHHHHHHHHHHHHHHHHHT---EEE--HHHHHHHHHHTB--HHHHHHHHHH
T ss_pred HHHhhhhhhhHHHHHHHhCC-CCcc-chhhcccceeeeeeeeechhhcCCCCcc-ccccchhhhhhccccceeeeHHHHH
Confidence 22333332 233333332 3232 5678999999999999999999999985 56665554 4456667777777766
Q ss_pred HHHHHHHhccchhhHhhhcChHHHHH-HHHHHHHHHHHHhhhcC--CcchHHHHHHHHHHHHHHhhH
Q 012209 362 KLAIGLVFGNSFMRILGQFPIGILGV-LLLFAGIELAMASRDMN--TKEESFVMLVCAAVSLTGSSA 425 (468)
Q Consensus 362 ~ll~~L~~~~~~~~ll~~iP~avLaa-ili~ag~~L~~~~~~~~--~~~~~~v~~~t~~~tl~~~~i 425 (468)
.+++.+ .|.+.+++..+|.+++++ .++..|.-+....+.++ +.+|.--.+++.+...++.++
T Consensus 319 ~i~~~~--~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~~r~~~iv~~~l~~g~~i 383 (389)
T PF00860_consen 319 LILFGL--SPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDSARNAFIVGLSLPLGLSI 383 (389)
T ss_dssp HHHHT----HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH-
T ss_pred HHHHhh--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCccccHHHHHHhHHHHHHH
Confidence 644333 244568999999999754 45667777765544321 233344444444444433333
No 14
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.76 E-value=2e-15 Score=159.23 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=173.8
Q ss_pred hCCChhhHHHHHHHHHHHHHHh--cCCcccchhHHHHHHHHHhc--C----CCCCHHHHHHHHHHHHHHHHHHHHhhhH-
Q 012209 54 SNLDLSTTLIFTSLYNIATGLL--FGLPMPVQPMKSIAAVAVSE--S----PHLTTSQIAAAGLCTAATLFLLGLTGLM- 124 (468)
Q Consensus 54 aGlpp~~~l~~~gl~~ii~g~~--~~~pl~v~P~~aiaa~~i~~--~----~~~~~~~~~~a~ll~Gvi~lllGl~rlg- 124 (468)
-|+|++..++.+|+.+++.+.. .|.|+..++..+.....++. . .+...+++.++.+++|++++++|+++++
T Consensus 54 lgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~ 133 (429)
T TIGR03616 54 MGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRT 133 (429)
T ss_pred hCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999998765 56787777654433322211 0 1224677888999999999999999876
Q ss_pred --HHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q 012209 125 --SFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQ 202 (468)
Q Consensus 125 --~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~ 202 (468)
+++.|++|+-|..-+...+|+.++-..++...+. +...|. .+ +.+.++.+..+ .
T Consensus 134 ~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~---------~~~~~~---al-~tl~~i~l~~l-~---------- 189 (429)
T TIGR03616 134 GTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS---------GFDSWM---AV-LTILCIGAVAV-F---------- 189 (429)
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc---------ccccHH---HH-HHHHHHHHHHH-H----------
Confidence 6668888988888888888888887777653211 111221 11 11222211111 1
Q ss_pred ccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHh----cCC---ccCccccC--CCcccccCCChhhh
Q 012209 203 EFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIR----DPT---IFNDLRFG--PSEISVLKITWDDW 273 (468)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~----~~~---~~~~~~~g--~~~p~~~~p~~~~~ 273 (468)
.|+ .. +.-+.++.+++|.++++.. +.. +...+.-. ...|.+..|.| ||
T Consensus 190 -------------------~~~--~l-~~~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~f-~~ 246 (429)
T TIGR03616 190 -------------------TRG--ML-QRLLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPVF-NA 246 (429)
T ss_pred -------------------HHH--HH-HHHHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccCCcCCCceE-cH
Confidence 111 11 1237788899998887753 211 11111100 13444555544 34
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcchh
Q 012209 274 KVGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGM 353 (468)
Q Consensus 274 ~~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~l 353 (468)
. .....++...+++.+++-......+ ...++.+.+.||++.++|++|++++++|+.|.+.. +-|...+++|+.
T Consensus 247 ~--~il~~~~~~lv~~~esiG~~~a~~~-~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~----~en~g~i~~T~v 319 (429)
T TIGR03616 247 N--AMLLIAPVALILVAENLGHFKAVAG-MTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTY----AENIGVMAVTKV 319 (429)
T ss_pred H--HHHHHHHHHHHHHHHhhHHHHHHHH-HhCCCCCchhccchhhhhHHHHHHHhcCCCCCcce----eeeeeeeeecCc
Confidence 2 2223333333344444332222222 11111112468999999999999999999987643 455677788888
Q ss_pred H--HHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHH
Q 012209 354 A--VVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELA 397 (468)
Q Consensus 354 a--~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~ 397 (468)
+ .++.....+++++.+.|.+..++..+|.+++|++++ +.+.++
T Consensus 320 ~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i 364 (429)
T TIGR03616 320 YSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLI 364 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHH
Confidence 8 344444444555666654555999999999999887 556654
No 15
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.48 E-value=2.5e-11 Score=127.07 Aligned_cols=309 Identities=19% Similarity=0.263 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHHHh---c--CCcccchhHHHHHHHH--HhcCCCCCHHHHHHH
Q 012209 42 TFIPIVLTLTLVSNLDLS-------TTLIFTSLYNIATGLL---F--GLPMPVQPMKSIAAVA--VSESPHLTTSQIAAA 107 (468)
Q Consensus 42 t~lP~~~a~a~~aGlpp~-------~~l~~~gl~~ii~g~~---~--~~pl~v~P~~aiaa~~--i~~~~~~~~~~~~~a 107 (468)
+.+|+.++.+ -|++++ +.++.+|+.+++-.+. . +.|.-.+..-+..+.. +....+.+...+..+
T Consensus 34 V~VPlivg~a--~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ 111 (451)
T COG2233 34 VLVPLLVGLA--LGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGG 111 (451)
T ss_pred hHhhHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHH
Confidence 4567766543 345533 4577889988875542 4 3454445433333222 222112347788888
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHH
Q 012209 108 GLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILF 187 (468)
Q Consensus 108 ~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 187 (468)
.+.+|++.++++.+--. ++.|++|+-|..=++.=+|+.++-..++++.|.+... ++..+...+.+.+++.+++.
T Consensus 112 ii~ag~~~~li~~~~~~-~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~-----~~~~~~~~~~l~la~~tl~~ 185 (451)
T COG2233 112 IIAAGLVYFLISPIVKI-RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAA-----GNPDFGSLENLGLALVTLLI 185 (451)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCC-----CCcccCchhHHHHHHHHHHH
Confidence 99999999988887665 5699999999999999999999999999888763111 11122222345567666666
Q ss_pred HHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccccCC--Ccccc
Q 012209 188 LVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLRFGP--SEISV 265 (468)
Q Consensus 188 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~~g~--~~p~~ 265 (468)
+++.. ++.| .+.+++ +.|+.+++|.++++..+..+.+.+.-.+ ..|.+
T Consensus 186 il~~~---------------------------~f~~--g~~~~i-~ILiGlv~G~~la~~~G~vdf~~v~~a~w~~~P~~ 235 (451)
T COG2233 186 ILLIN---------------------------RFGK--GFLRRI-PILIGLVVGYLLALFMGMVDFSGVAEAPWFALPTP 235 (451)
T ss_pred HHHHH---------------------------HHhh--hHHHHH-HHHHHHHHHHHHHHHhCCcCccccccCceeeCCcc
Confidence 65433 1112 122333 5778899999999987643322221001 22333
Q ss_pred cCC--ChhhhHHHHHHHhhhhHHHHHHHHHH---HHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhh
Q 012209 266 LKI--TWDDWKVGFLRAAIPQIPLSVLNSVI---AVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGG 340 (468)
Q Consensus 266 ~~p--~~~~~~~~~l~~~l~~~~lt~~~svi---a~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~sr 340 (468)
..+ .| ||. .....+|...+++.|++- +.....++-+ ++ +.+.+|-+++.|++++++++||++|.+...-.
T Consensus 236 ~~fg~~F-~~~--ail~m~~v~iV~~~E~~G~i~A~~~itg~~~-~~-~~~l~rg~~aDGlat~iag~fg~~p~TtfaqN 310 (451)
T COG2233 236 FYFGMAF-DWG--AILTMLPVAIVTIVEHTGDITATGEITGRDL-DG-KPRLRRGLLADGLATLIAGLFGGFPNTTFAQN 310 (451)
T ss_pred cCCCeee-cHH--HHHHHHHHHHHHHHHHhhhhhhHHhHhCCcC-cc-CcccccceeeccHHHHHHHhcCCCCCCchhhc
Confidence 222 22 342 222233333334444432 2333333222 11 35567778899999999999999999854333
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHH
Q 012209 341 LAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIEL 396 (468)
Q Consensus 341 sa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L 396 (468)
.-+-.-.|-+||.....+|++++++.++ |....+++.||.+|+|++-+ +-+++
T Consensus 311 iGvv~lT~v~Sr~V~~~aavili~lgl~--pk~~al~~sIP~pVlGGa~i-vmFG~ 363 (451)
T COG2233 311 IGVVALTGVYSRYVIAGAAVILILLGLF--PKFGALIQSIPSPVLGGAML-VLFGM 363 (451)
T ss_pred eeeeeeccCChhHHHHHHHHHHHHHHhh--HHHHHHHHhCChhhhhHHHH-HHHHH
Confidence 3344467899999999999888776665 45668999999999988643 33444
No 16
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.37 E-value=3.2e-09 Score=112.16 Aligned_cols=305 Identities=14% Similarity=0.083 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHHHh-cCCcccchhHHHHH--HHHHh--c-CCCCCHHHHHH--
Q 012209 42 TFIPIVLTLTLVSNLDLS-------TTLIFTSLYNIATGLL-FGLPMPVQPMKSIA--AVAVS--E-SPHLTTSQIAA-- 106 (468)
Q Consensus 42 t~lP~~~a~a~~aGlpp~-------~~l~~~gl~~ii~g~~-~~~pl~v~P~~aia--a~~i~--~-~~~~~~~~~~~-- 106 (468)
...|+.++ ...|+|++ +.++.+|+.+++=+.+ .|.|+.-+|.-+.. ..+++ + ..+.+.+++..
T Consensus 26 i~vPliva--~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~~g~l 103 (433)
T PRK11412 26 VVVPPTLL--SAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSL 103 (433)
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHHHHHH
Confidence 34676655 44788875 4455678888875542 34577666643332 12222 1 11333445554
Q ss_pred --HHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHH
Q 012209 107 --AGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTA 184 (468)
Q Consensus 107 --a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (468)
+.+++|++.+++|.+++.+++.|++|+-|..=++.=+|+.+.-..++.+.|.++-. .++.. +| ....+.+++..
T Consensus 104 ~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~-~~~~~--~~-~~~~~~~a~~~ 179 (433)
T PRK11412 104 AVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI-ADPNG--KI-QLPPFGLSVAV 179 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC-ccccc--cc-chHHHHHHHHH
Confidence 47999999999999997777799999999999999999999999999887641100 00111 11 11233344444
Q ss_pred HHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHH-HhcCCc--cCccccCCC
Q 012209 185 ILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCF-IRDPTI--FNDLRFGPS 261 (468)
Q Consensus 185 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~-~~~~~~--~~~~~~g~~ 261 (468)
+++++.+.. +.| + ..+.=+.++.+++|.+++. .++.+. ..+..+ ..
T Consensus 180 l~~il~~~~---------------------------~~~--g-~~~~~svLiGiv~G~v~a~~~~g~d~~~v~~a~w-~~ 228 (433)
T PRK11412 180 MCLVLAMII---------------------------FLP--Q-RIARYSLLVGTIVGWILWAFCFPSSHSLSGELHW-QW 228 (433)
T ss_pred HHHHHHHHH---------------------------Hhh--h-HHHHHHHHHHHHHHHHHHHHHhCCCcchhccCCc-ee
Confidence 444433220 011 1 1122357778888888754 443311 111111 11
Q ss_pred cccccCCC-hhhhHHHHHHHhhhhHHHHHHHHH---HHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccch
Q 012209 262 EISVLKIT-WDDWKVGFLRAAIPQIPLSVLNSV---IAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHG 337 (468)
Q Consensus 262 ~p~~~~p~-~~~~~~~~l~~~l~~~~lt~~~sv---ia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s 337 (468)
.| +..|. | ||. ..+ ..++...+...|++ .+.....++-. ++ +.+.+|-+.+.|++|+++++||++|.+..
T Consensus 229 ~p-fG~P~~F-~~~-~il-~~~~~~lv~~~e~iG~~~a~~~~~~~~~-~~-~~~l~rgi~~dGi~s~laglfg~~p~tt~ 302 (433)
T PRK11412 229 FP-LGSGGAL-EPG-IIL-TAVITGLVNISNTYGAIRGTDVFYPQQG-AG-NTRYRRSFVATGFMTLITVPLAVIPFSPF 302 (433)
T ss_pred ec-CCCCCcc-CHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC-CcccccchhhccHHHHHHHhcCCCCCCch
Confidence 12 33453 5 343 222 22222222233322 22222222211 11 33678899999999999999999999754
Q ss_pred hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHH
Q 012209 338 AGGLAGQYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLF 391 (468)
Q Consensus 338 ~srsa~n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ 391 (468)
.....+-...|-++|....++|++++++.++ |.+..++..+|.+++|++.++
T Consensus 303 sqNvGvi~~TgV~SR~v~~~aa~ilillgl~--PK~~alia~IP~pVlGg~~~~ 354 (433)
T PRK11412 303 VSSIGLLTQTGDYRRRSFIYGSVMCLLVALI--PALTRLFCSIPLPVSSAVMLV 354 (433)
T ss_pred hhhhhhhhhcCCchhHHHHHHHHHHHHHHHH--HHHHHHHHhCCHHHHHHHHHH
Confidence 3333444568899999999999998777666 667789999999999988754
No 17
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=98.80 E-value=1.2e-08 Score=83.87 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCC-chhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHH
Q 012209 19 NHR-PGRRKHSLVSELSGAVGDLGTFIPIVLTLTLVSNLDLSTTLIFTSLYNIATGLLFGLP-MPVQPMKSIAAVA 92 (468)
Q Consensus 19 ~~~-~~~~~~~~~~el~g~l~~~~t~lP~~~a~a~~aGlpp~~~l~~~gl~~ii~g~~~~~p-l~v~P~~aiaa~~ 92 (468)
+.+ |+++|+|+.++++.++ +.+||+|+||.++|+||.+|+|++.+..++.+++.+++ +.++|.++++.+.
T Consensus 9 ~y~~k~~~~~D~~aGltva~----~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 9 RYSWKSNLRGDLLAGLTVAL----VAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred cCChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 345 5777777777777666 88999999999999999999998888888878766654 7889988877654
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.61 E-value=0.00023 Score=80.92 Aligned_cols=309 Identities=15% Similarity=0.132 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCccc----chhHHHHHH--HHHhcCCCCCHHHHHH-HHHHHHHHHHHHHHhhhHHHHhhcc
Q 012209 59 STTLIFTSLYNIATGLLFGLPMP----VQPMKSIAA--VAVSESPHLTTSQIAA-AGLCTAATLFLLGLTGLMSFFYRFI 131 (468)
Q Consensus 59 ~~~l~~~gl~~ii~g~~~~~pl~----v~P~~aiaa--~~i~~~~~~~~~~~~~-a~ll~Gvi~lllGl~rlg~ll~~~I 131 (468)
.=.++++++.+++.+++.|.|+. .||....-- +-+++..+.++-...+ .++++.++.+++..+..-.+ +||+
T Consensus 404 ~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~l-vryi 482 (900)
T TIGR00834 404 SELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFL-VRYI 482 (900)
T ss_pred HHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHH
Confidence 34567788999999999999963 356544322 2234423444443333 47999999999999999886 9999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhcCC-ccc---cc-------cCCC----------------------CCCC---chh
Q 012209 132 PLPVVRGVQLSQGLSFAFTAIKYVRFNQ-DFA---TS-------KSTS----------------------SRPW---LGL 175 (468)
Q Consensus 132 p~pVi~Gf~aGigl~I~~~ql~~~lg~~-~~~---~~-------~~~~----------------------~~~~---~~~ 175 (468)
.+-----|-.=|+++.+...++.+...- ..+ .. +... .-.+ ..+
T Consensus 483 TRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~l 562 (900)
T TIGR00834 483 SRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTAL 562 (900)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccccccccccchHHH
Confidence 9998888888888888888888665421 000 00 0000 0000 011
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCc
Q 012209 176 DGLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFND 255 (468)
Q Consensus 176 ~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~ 255 (468)
-++++.+.++.+...+.. + ++++= .++..|+ .... =+..+++++-+.+.+.++......
T Consensus 563 lsliL~lgTf~~a~~L~~----------f-----k~s~y---f~~~vR~--~isD-fgv~iaI~~~t~v~~~~~~v~~~k 621 (900)
T TIGR00834 563 LSLVLMLGTFFLAMFLRK----------F-----KNSRY---FPGKARR--LIGD-FGVPISILIMVLVDIFIGDTYTQK 621 (900)
T ss_pred HHHHHHHHHHHHHHHHHH----------h-----CCCCc---CCchhhh--hhhh-hhHHHHHHHHHHHHHHhccCcccc
Confidence 123333333322221110 0 00000 0000111 1111 133345555555566543111111
Q ss_pred ccc----CCCcc---cccCCCh------hhhHHHHHHHhhhhHHHHHHHHHH-HHH-HHhcc--cCCCccccccchhHHH
Q 012209 256 LRF----GPSEI---SVLKITW------DDWKVGFLRAAIPQIPLSVLNSVI-AVC-KLSGD--LFPDREELSATKVSIS 318 (468)
Q Consensus 256 ~~~----g~~~p---~~~~p~~------~~~~~~~l~~~l~~~~lt~~~svi-a~~-~l~~~--l~~~~~~~~~n~el~a 318 (468)
.++ .|..| .+..+.| +.| ..+...+|.+.++++...- -++ .++++ ..-.| .---+=+++-
T Consensus 622 l~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w--~~~~A~iPAlll~ILiFmD~nIts~iv~~~e~kLkK-gsgyH~Dlll 698 (900)
T TIGR00834 622 LSVPSGLKVTNPSARGWFIPPLGENRPFPWW--MMFAAALPALLVFILIFMEQQITTLIVSKKERKLKK-GSGFHLDLLL 698 (900)
T ss_pred cCCCCCcCCCCCCCCCeEEccccccccccHH--HHHHHHHHHHHHHHHHHHHhhhHHHHhcCccccCCC-CcccchHHHH
Confidence 111 12222 1212112 222 2344556666555543221 112 22221 11111 2223558999
Q ss_pred HhHHHHHhhhhCCccccchhhhhhhhhc----------CCC--------cchhHHHHHHHHHHHHHHHhccchhhHhhhc
Q 012209 319 VGVMNFVGCWFGAMPVCHGAGGLAGQYR----------FGA--------RSGMAVVFLGLGKLAIGLVFGNSFMRILGQF 380 (468)
Q Consensus 319 ~GlaNl~~~~fGg~p~~~s~srsa~n~~----------~Ga--------rT~la~vv~g~~~ll~~L~~~~~~~~ll~~i 380 (468)
+|+.|.++|++|--+.|+...+|-.+.+ -|. .+|+++++.++++ .+.++++ |++.+|
T Consensus 699 lg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLi-glsv~~~----PvL~~I 773 (900)
T TIGR00834 699 VVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLV-GLSILME----PILKRI 773 (900)
T ss_pred HHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHH-HHHHHHH----HHHhhc
Confidence 9999999999999989888776654321 121 3789999999877 3445556 799999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 012209 381 PIGILGVLLLFAGIELA 397 (468)
Q Consensus 381 P~avLaaili~ag~~L~ 397 (468)
|++||.++.++.|+.=+
T Consensus 774 P~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 774 PLAVLFGIFLYMGVTSL 790 (900)
T ss_pred cHHHHHHHHHHHHHhhc
Confidence 99999999999988753
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.04 E-value=0.0038 Score=70.02 Aligned_cols=304 Identities=17% Similarity=0.150 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHHHhcCCccc----chhHHHHH--HHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhccC
Q 012209 60 TTLIFTSLYNIATGLLFGLPMP----VQPMKSIA--AVAVSESPHLTTSQIA-AAGLCTAATLFLLGLTGLMSFFYRFIP 132 (468)
Q Consensus 60 ~~l~~~gl~~ii~g~~~~~pl~----v~P~~aia--a~~i~~~~~~~~~~~~-~a~ll~Gvi~lllGl~rlg~ll~~~Ip 132 (468)
=.+.++.+.+++.+++.|.|+. .+|....= ..-.+...+.++-... -.++++.++.+++..+....+ ++|+.
T Consensus 396 E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~dyl~~r~wVglW~~~l~illaa~~as~l-v~~~T 474 (876)
T KOG1172|consen 396 ETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLDYLAFRAWVGLWTAFLLILLAATNASSL-VKYIT 474 (876)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHhhhhHH-HHHHH
Confidence 3566778999999999999963 34643321 1234442233333322 246999999999999999887 99999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhcCC-----ccc------------cccCC----CCCCCchhhHHHHHHHHHHHHHHH
Q 012209 133 LPVVRGVQLSQGLSFAFTAIKYVRFNQ-----DFA------------TSKST----SSRPWLGLDGLLLALTAILFLVLT 191 (468)
Q Consensus 133 ~pVi~Gf~aGigl~I~~~ql~~~lg~~-----~~~------------~~~~~----~~~~~~~~~~~~l~~~~l~~l~l~ 191 (468)
+.-=-.|-.=|+++.+...++.+.... ++. ..... ....|. .++.+++++-.+-.+.+
T Consensus 475 RfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~llslil~~gt~~~ 553 (876)
T KOG1172|consen 475 RFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCR-PDTALLSLILMFGTLFL 553 (876)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCC-cchHHHHHHHHHHHHHH
Confidence 999999999999999988888665431 110 00000 001111 12222332211111111
Q ss_pred hccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccch-------HHHHHHHHHHHHHHHhcCCccCcccc----CC
Q 012209 192 TGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIP-------AALVVFLLGLILCFIRDPTIFNDLRF----GP 260 (468)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP-------~~Li~vvvg~~l~~~~~~~~~~~~~~----g~ 260 (468)
.. ++|..|++++.++.= +..+.+++-+.+.++.+......+.. ++
T Consensus 554 a~------------------------~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~vp~~~~~ 609 (876)
T KOG1172|consen 554 AL------------------------TLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLPVPSVFPP 609 (876)
T ss_pred HH------------------------HHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccccCcCCCC
Confidence 10 001112222211111 22223333344444432111122211 11
Q ss_pred Ccc---cccCCC-h-hhhHHHHHHHhhhhHHHHHHHHHH--HHHHHhcc--cCCCccccccchhHHHHhHHHHHhhhhCC
Q 012209 261 SEI---SVLKIT-W-DDWKVGFLRAAIPQIPLSVLNSVI--AVCKLSGD--LFPDREELSATKVSISVGVMNFVGCWFGA 331 (468)
Q Consensus 261 ~~p---~~~~p~-~-~~~~~~~l~~~l~~~~lt~~~svi--a~~~l~~~--l~~~~~~~~~n~el~a~GlaNl~~~~fGg 331 (468)
+.| .+..+. . ..|. ..+..++|.+.++++...- -.+.++++ ..-+| .-.-.=+++-+|+.|+++|++|=
T Consensus 610 t~~~~rgw~v~~~~~~P~~-~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKK-gsgyH~DLlllgil~~icsllGL 687 (876)
T KOG1172|consen 610 TWPFDRGWFVPPFGKNPWW-YVFAALIPALLLTILIFMDQQITAVIVNRKENKLKK-GSGYHLDLLLLGILTLICSLLGL 687 (876)
T ss_pred CCcccCCeeeCCCCCCCHH-HHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCC-CcchhHHHHHHHHHHHHHHhcCC
Confidence 111 111111 1 1121 2445566666666553210 11222322 11111 22224478999999999999999
Q ss_pred ccccchhhhhhhhhcC-----------------C-CcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHH
Q 012209 332 MPVCHGAGGLAGQYRF-----------------G-ARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAG 393 (468)
Q Consensus 332 ~p~~~s~srsa~n~~~-----------------G-arT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag 393 (468)
-+.++...+|-.+.++ | --+|+++++.++++. +..++. |++..||++||-++-.+-|
T Consensus 688 Pw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg-ls~~~~----pvL~~IP~~VL~GvFlYMg 762 (876)
T KOG1172|consen 688 PWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG-LSVLLL----PVLKLIPMPVLYGVFLYMG 762 (876)
T ss_pred CccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH-HHHHHH----HHHhhccHHHHHHHHHHHh
Confidence 9999887776544321 1 136899999998885 333344 7999999999999888887
Q ss_pred HHH
Q 012209 394 IEL 396 (468)
Q Consensus 394 ~~L 396 (468)
+.=
T Consensus 763 v~S 765 (876)
T KOG1172|consen 763 VSS 765 (876)
T ss_pred hcc
Confidence 753
No 20
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.0035 Score=66.23 Aligned_cols=308 Identities=19% Similarity=0.263 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhCCChh------hHHHHHHHHHHHHHHh-cCCcccchhHHHHHH--HHHhcCC-------CCC-----
Q 012209 42 TFIPIVLTLTLVSNLDLS------TTLIFTSLYNIATGLL-FGLPMPVQPMKSIAA--VAVSESP-------HLT----- 100 (468)
Q Consensus 42 t~lP~~~a~a~~aGlpp~------~~l~~~gl~~ii~g~~-~~~pl~v~P~~aiaa--~~i~~~~-------~~~----- 100 (468)
+++|..++=+.-.|=... +.++.+|+.+++=..+ -|+|+..+|.-+... .++...+ +..
T Consensus 30 v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~ 109 (510)
T KOG1292|consen 30 VLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTER 109 (510)
T ss_pred hhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHH
Confidence 557776664432222222 3555678888774432 346777777543322 2222110 111
Q ss_pred H----HHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhh
Q 012209 101 T----SQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLD 176 (468)
Q Consensus 101 ~----~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~ 176 (468)
| +++-++-+++..+|.++|.+++-..+.||+..=.+.=..+=+|+.+.-...+.+ ..+|=
T Consensus 110 ~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~-------------~~~we--- 173 (510)
T KOG1292|consen 110 FQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL-------------GKHWE--- 173 (510)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh-------------hhhee---
Confidence 2 234567799999999999999999999999998888777777776665555543 22331
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHh---cCCcc
Q 012209 177 GLLLALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIR---DPTIF 253 (468)
Q Consensus 177 ~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~---~~~~~ 253 (468)
+++..+..++++.. + . +++|... ..+|.+...+.|-.+-+ .+.=..++++ +....
T Consensus 174 ---I~l~~~llli~fsq-------y--~---~~~~~~~------~~~~~~if~~f~vll~i-~ivW~~~~iLT~tgay~~ 231 (510)
T KOG1292|consen 174 ---ISLPEILLLILFSQ-------Y--A---SLPKKGF------GSRRIQIFSRFPVLLAI-AIVWLYCFILTITGAYPY 231 (510)
T ss_pred ---ecHHHHHHHHHHHH-------h--h---hcccccc------cccccchHhhccHHHHH-HHHHHHHHHHHhccccCC
Confidence 22333333332221 0 0 0000000 01222334445544422 2222223322 11100
Q ss_pred ------CccccC-----CCcc--------cccCCChhhhHHHHHHHhhhhHHHHHHHHH---HHHHHHhcccCCCccccc
Q 012209 254 ------NDLRFG-----PSEI--------SVLKITWDDWKVGFLRAAIPQIPLSVLNSV---IAVCKLSGDLFPDREELS 311 (468)
Q Consensus 254 ------~~~~~g-----~~~p--------~~~~p~~~~~~~~~l~~~l~~~~lt~~~sv---ia~~~l~~~l~~~~~~~~ 311 (468)
..-+.. ...| .+..|.++ + +....++.....++++++ .+.+.++++--|. +-.
T Consensus 232 ~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~-~--~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP--~~~ 306 (510)
T KOG1292|consen 232 KPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFS-A--GLVFAMMAASLVAMIESTGDYIACARLSSATPPP--PSV 306 (510)
T ss_pred CccccCCcccccHhhhhccCCceeecCCCccCCCccc-H--HHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCC--hhh
Confidence 000000 0112 12233332 2 222233333233344443 2223333322221 345
Q ss_pred cchhHHHHhHHHHHhhhhCCccccchhhhhhh---hhcCCCcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHH
Q 012209 312 ATKVSISVGVMNFVGCWFGAMPVCHGAGGLAG---QYRFGARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVL 388 (468)
Q Consensus 312 ~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~---n~~~GarT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaai 388 (468)
.||-...+|++.+++|+||.-..+..+++-.. --+.|.|. .--++|.+++++.++ + -...+++.||.++.|++
T Consensus 307 inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRr--vvQ~aa~fmI~~~i~-g-KFgA~fAsIP~piv~~l 382 (510)
T KOG1292|consen 307 LNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRR--VVQIAAGFMIFFGIF-G-KFGAFFASIPDPIVGGL 382 (510)
T ss_pred hhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeee--ehhhhHHHHHHHHHH-H-HHHHHHHcCcHHHHHHH
Confidence 68999999999999999998776655544321 12455443 344555555555555 1 22379999999999997
Q ss_pred HHHHHHHHH
Q 012209 389 LLFAGIELA 397 (468)
Q Consensus 389 li~ag~~L~ 397 (468)
+ ..++.|+
T Consensus 383 ~-c~~~~mv 390 (510)
T KOG1292|consen 383 L-CILFGMV 390 (510)
T ss_pred H-HHHHHHH
Confidence 5 3445554
No 21
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.07 E-value=0.093 Score=54.06 Aligned_cols=302 Identities=16% Similarity=0.149 Sum_probs=153.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCChhhH-------HHHHHH-HHHHHHHhc----CCcccchhHHHHHHHHHhcCCCC
Q 012209 32 ELSGAVGDLGTFIPIVLTLTLVSNLDLSTT-------LIFTSL-YNIATGLLF----GLPMPVQPMKSIAAVAVSESPHL 99 (468)
Q Consensus 32 el~g~l~~~~t~lP~~~a~a~~aGlpp~~~-------l~~~gl-~~ii~g~~~----~~pl~v~P~~aiaa~~i~~~~~~ 99 (468)
.+.|-.|-+...=-.+.++|.--|+++... ++..++ +.++.+-+. +.+-.-+|+...--...+.+ ++
T Consensus 65 AlAgtIGkivMvsAv~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAGthgPmIpLIp~ivaaG-gH 143 (492)
T PF11840_consen 65 ALAGTIGKIVMVSAVAAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAGTHGPMIPLIPLIVAAG-GH 143 (492)
T ss_pred HHHhhhhHHHHHHHHHHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccCCCCCcchhhHHHHHcC-CC
Confidence 344444444444456667777778887633 223343 455443322 23333356544332222221 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHH
Q 012209 100 TTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLL 179 (468)
Q Consensus 100 ~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~ 179 (468)
+ ++.+++.|++=++++.+|.|+++++.-++-|..|.+.=.|+.=..+|++++..-. . . ....|.. -++
T Consensus 144 P----Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa---~--~-~~~~~i~--fvv 211 (492)
T PF11840_consen 144 P----LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWA---N--G-FDMGYIA--FVV 211 (492)
T ss_pred c----HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHH---h--c-cCccHHH--HHH
Confidence 2 2446889999999999999999999999999998877777777789998764210 0 0 1122221 111
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcccccCCCCCCccchhhhhhhhhhhhcccchH-HHHHHHHHHHHHHHhcCCccCcccc
Q 012209 180 LALTAILFLVLTTGSGDYGTHNQEFDIDNTDDVNDSGRRLRLHTRLRILSAIPA-ALVVFLLGLILCFIRDPTIFNDLRF 258 (468)
Q Consensus 180 l~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~iP~-~Li~vvvg~~l~~~~~~~~~~~~~~ 258 (468)
+.+..+.+..+ . +.+||| -.+|- .+++.++..+++.-++...
T Consensus 212 i~~tiv~Ya~L-~---------------------------k~~KrW---LaIPl~~~~a~~~a~~lGa~f~f~t------ 254 (492)
T PF11840_consen 212 IIVTIVLYAYL-A---------------------------KIEKRW---LAIPLCSILAGVLAFALGAPFEFTT------ 254 (492)
T ss_pred HHHHHHHHHHH-H---------------------------Hhccch---hhhhHHHHHHHHHHHHcCCCceeec------
Confidence 22222222221 1 113433 24563 3333443333333222211
Q ss_pred CCCcccccCCC-----------hhhhHHHHHHHhhhhHHHHHHH---HHHHHHHHhcccCCCc---cccccchhHHHHhH
Q 012209 259 GPSEISVLKIT-----------WDDWKVGFLRAAIPQIPLSVLN---SVIAVCKLSGDLFPDR---EELSATKVSISVGV 321 (468)
Q Consensus 259 g~~~p~~~~p~-----------~~~~~~~~l~~~l~~~~lt~~~---svia~~~l~~~l~~~~---~~~~~n~el~a~Gl 321 (468)
.|..|.+..-. +++++ .....+|...++... -..+-..+.+..+|++ ...|.|+.+..-.+
T Consensus 255 ~pglp~lnP~YWWge~tGw~LglP~~~--hfiav~PFAiLAVaMWSpDflghrvFqelnypk~~~kvlMnvDDTm~~~si 332 (492)
T PF11840_consen 255 EPGLPNLNPMYWWGEETGWQLGLPTLE--HFIAVLPFAILAVAMWSPDFLGHRVFQELNYPKETKKVLMNVDDTMTMCSI 332 (492)
T ss_pred CCCCCCCCCcccccCCcccccCCCcHH--HHHHhccHHHHHHHHhCchHHHHHHHHHhcCchhhcceeecccchhHHHHH
Confidence 12222221111 12221 112334443322211 0112222333334444 35789999999999
Q ss_pred HHHHhhhhCCccccchhhhhhhhhcCCCcc--hhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHH
Q 012209 322 MNFVGCWFGAMPVCHGAGGLAGQYRFGARS--GMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLL 390 (468)
Q Consensus 322 aNl~~~~fGg~p~~~s~srsa~n~~~GarT--~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili 390 (468)
=|++|+.+||--.+.|- ||-.-..+=||. +-.++.+|++|.+.+++--| +.+.-+= +++...|+
T Consensus 333 RQ~vGs~lGGgN~~SsW-gTymIPaaIaKRPIpggAiLtg~~Ci~~av~GyP--Mdlavw~--Pvl~vALl 398 (492)
T PF11840_consen 333 RQIVGSILGGGNIASSW-GTYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYP--MDLAVWP--PVLRVALL 398 (492)
T ss_pred HHHHhhcccCCcccccc-hhhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCc--chhhhcc--cHHHHHHH
Confidence 99999999998877552 332222222333 34679999999887777544 3444443 34444433
No 22
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.43 E-value=0.0015 Score=70.53 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=15.1
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCccc-c---hhHHHHHH--HHHhcCCCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHh
Q 012209 56 LDLSTTLIFTSLYNIATGLLFGLPMP-V---QPMKSIAA--VAVSESPHLTTSQIA-AAGLCTAATLFLLGLTGLMSFFY 128 (468)
Q Consensus 56 lpp~~~l~~~gl~~ii~g~~~~~pl~-v---~P~~aiaa--~~i~~~~~~~~~~~~-~a~ll~Gvi~lllGl~rlg~ll~ 128 (468)
+...-.++++++.+++.+++.|.|+. + +|....-. .-+++..++++-... -.+++++++.+++..+..-.+ +
T Consensus 65 ~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~~~fl~~~~wig~w~~~~~~~~~~~~~s~l-v 143 (510)
T PF00955_consen 65 IGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCKSYGLDFLPFRAWIGIWTAIFLLVLAAFNASFL-V 143 (510)
T ss_dssp --HHHHHHHHHHHHHHHHHCC-----------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 33344567788999999999999963 3 44422211 122332233333332 246999999999999999886 9
Q ss_pred hccChhHHHHHHHHHHHHHHHhhhhhhhc
Q 012209 129 RFIPLPVVRGVQLSQGLSFAFTAIKYVRF 157 (468)
Q Consensus 129 ~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg 157 (468)
+|+.+.---.|-.=|++..+...++.+..
T Consensus 144 ~~~TRfTeEiF~~lIs~iFi~ea~~~l~~ 172 (510)
T PF00955_consen 144 RYITRFTEEIFALLISIIFIYEAIKKLVK 172 (510)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999988888888888888888886654
No 23
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=77.65 E-value=29 Score=30.84 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHhhhhccc
Q 012209 408 ESFVMLVCAAVSLT-GS-SAALGFCCGILLFLLLKLRSMECSRF 449 (468)
Q Consensus 408 ~~~v~~~t~~~tl~-~~-~i~~Gi~vGi~~~~~l~~~~~~~~~~ 449 (468)
-....++|+....+ +. ....++..++++..++..|+.-++..
T Consensus 86 Taaal~~t~~iG~l~g~g~~~~A~~~~v~~~~iL~~k~~l~~~i 129 (134)
T PF02308_consen 86 TAAALWLTFAIGALVGAGYYVLAVAAAVLVLIILALKRPLHRFI 129 (134)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555332 22 46788888888888888887766544
No 24
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=75.11 E-value=46 Score=35.00 Aligned_cols=88 Identities=23% Similarity=0.194 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHHHHhhccChhHHHH
Q 012209 60 TTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLT-GLMSFFYRFIPLPVVRG 138 (468)
Q Consensus 60 ~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~-rlg~ll~~~Ip~pVi~G 138 (468)
.++..-|+.+++.+++.+.|...-..++. ....+. ..+ +. +..++|+++++++++ ++..+ .+.+|.||+.|
T Consensus 257 ~~l~~~Gi~~i~aglfG~~p~t~~~~~~~-~~~~tg--~~s-r~---~~~~~~~~lil~~l~~~~~~l-~~~iP~~vlgg 328 (406)
T TIGR03173 257 GGLRADGLGSALGGLFNTFPYTSFSQNVG-LVQLTG--VKS-RY---VVAAAGVILVLLGLFPKLAAL-VASIPQPVLGG 328 (406)
T ss_pred chHHhccHHHHHHHHhCCCCCcchhhhHH-HHHHhC--CCc-hH---hHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHH
Confidence 56788899999999988877543222221 111222 112 22 236678888888887 57666 99999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q 012209 139 VQLSQGLSFAFTAIKYV 155 (468)
Q Consensus 139 f~aGigl~I~~~ql~~~ 155 (468)
.+...--.+...+++.+
T Consensus 329 ~~l~~~~~i~~~g~~~l 345 (406)
T TIGR03173 329 AGLVMFGMVAASGIRIL 345 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76654445555666554
No 25
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=72.39 E-value=7.8 Score=32.34 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=40.6
Q ss_pred hhhHhhhcChHHHHHHHHHHHHHHHHHhhh--cC-CcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012209 373 FMRILGQFPIGILGVLLLFAGIELAMASRD--MN-TKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLL 439 (468)
Q Consensus 373 ~~~ll~~iP~avLaaili~ag~~L~~~~~~--~~-~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l 439 (468)
.-.+++++|.++++++++..-+ ..... .+ +..+.....+++.......|....+++|+..+.++
T Consensus 32 ~~~~l~~vp~avl~aLv~~~i~---~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~v~~G~~~~~ll 98 (99)
T PF05437_consen 32 VRRFLRYVPPAVLAALVVPSIF---FPTGSLELSLGNPYLIAALVAALVALRTRNLLLSVLAGVAAFALL 98 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHc---cCccccccccchHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 4468899999999987554332 22111 11 22233344455555665568999999999998875
No 26
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=70.81 E-value=33 Score=36.38 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=67.0
Q ss_pred HHHHHhCCCh------hhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh-
Q 012209 49 TLTLVSNLDL------STTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLT- 121 (468)
Q Consensus 49 a~a~~aGlpp------~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~- 121 (468)
+.+..+|-++ ..++..-|+.+++.+++.+.|...--.|.. ....+ +..-+. +...+|++++++|++
T Consensus 256 a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g-~~~~T---~~~sr~---~~~~~a~~~i~~~l~p 328 (415)
T TIGR00801 256 ATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG-VIALT---RVASRW---VIVGAAVILIALGFFP 328 (415)
T ss_pred HHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe-eeeec---CCCchH---HHHHHHHHHHHHHHHH
Confidence 3445567633 257888899999999877777533222110 01111 222122 457778888888888
Q ss_pred hhHHHHhhccChhHHHHHHHHHHHHHHHhhhhhhh
Q 012209 122 GLMSFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVR 156 (468)
Q Consensus 122 rlg~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~l 156 (468)
|++.+ ...+|.||+.|...-.--.|...+++.+.
T Consensus 329 k~~~l-~~~iP~~vlgg~~l~~~~~i~~~gi~~l~ 362 (415)
T TIGR00801 329 KIAAL-ITSIPSPVLGGASIVMFGMIAASGIRILI 362 (415)
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67776 99999999999988777777888887764
No 27
>COG4392 Predicted membrane protein [Function unknown]
Probab=70.20 E-value=24 Score=30.33 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=44.3
Q ss_pred cchhhHhhhcChHHHHHHHHHHHHHHHHHh--hhcCCcchHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012209 371 NSFMRILGQFPIGILGVLLLFAGIELAMAS--RDMNTKEESFV-MLVCAAVSLTGSSAALGFCCGILLFLLLKL 441 (468)
Q Consensus 371 ~~~~~ll~~iP~avLaaili~ag~~L~~~~--~~~~~~~~~~v-~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~ 441 (468)
|....++++.|.++++|+.+- .++... .+......++. ..++.+....+.|..+.+++|+..+.+++.
T Consensus 35 ~~v~~~L~fvP~a~ltAL~~p---~vl~~~~g~~~s~~~p~llA~lvav~la~lTrnll~~il~Gm~~~~~lr~ 105 (107)
T COG4392 35 PWVRRFLSFVPVAILTALIAP---DVLMPHGGLDPSWNNPYLLAGLVAVALAILTRNLLATILVGMASFALLRL 105 (107)
T ss_pred HHHHHHHhhccHHHHHHHHhh---hHhccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999987432 222211 11223445554 345555566678999999999999887753
No 28
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=64.19 E-value=1.5e+02 Score=32.78 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=53.3
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhH
Q 012209 56 LDLSTTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPV 135 (468)
Q Consensus 56 lpp~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pV 135 (468)
.|+-.-++..|+.+++.+++.+.|..-+..- .++....+ +-+. .+++++|++.+++.++ +..+ .+++|.++
T Consensus 291 ~d~n~El~a~G~~N~~~~~fg~~p~~~s~sr--s~~~~~~G-~~t~----~a~i~~~~~~l~~~l~-~~~~-l~~iP~~~ 361 (563)
T TIGR00815 291 IDANQELVAQGIANIVGSFFSCYPATGSLSR--TAVNAKAG-CRTQ----LSGVVTAIVVLLVLLV-LTPL-FYYIPQAA 361 (563)
T ss_pred CCCcHHHHHhhHHHHHHHHhCccCCCCcchH--HHHHHhcC-Ccch----HHHHHHHHHHHHHHHH-HHHH-HHhChHHH
Confidence 5666678889999999999888886433221 11112111 1121 2345555555555444 3455 89999999
Q ss_pred HHHHHHHHHHHH
Q 012209 136 VRGVQLSQGLSF 147 (468)
Q Consensus 136 i~Gf~aGigl~I 147 (468)
..|.+.-+++.+
T Consensus 362 la~ili~~~~~l 373 (563)
T TIGR00815 362 LAAIIISAVRGL 373 (563)
T ss_pred HHHHHHHHHhcc
Confidence 999998888873
No 29
>PRK10720 uracil transporter; Provisional
Probab=58.01 E-value=32 Score=36.67 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHHHHhhccChhHHH
Q 012209 59 STTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLT-GLMSFFYRFIPLPVVR 137 (468)
Q Consensus 59 ~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~-rlg~ll~~~Ip~pVi~ 137 (468)
..++..-|+.+++.+++.+.|...-..|... .+.+ +..-.. ...++|++++++|++ |++.+ ...+|.||+.
T Consensus 263 ~r~l~adGlatii~glfG~~p~tty~en~g~-ia~T---~v~sr~---v~~~a~~~li~lg~~pk~~a~-ia~iP~pVlg 334 (428)
T PRK10720 263 HRSMFANGLSTVISGFFGSTPNTTYGENIGV-MAIT---RVYSTW---VIGGAAIIAILLSCVGKLAAA-IQAIPLPVMG 334 (428)
T ss_pred cchHhhhhHHHHHHHhcCCCCccccccccce-eeec---ccchhH---HHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHH
Confidence 3577888999999898777765331121110 1111 111122 224568888888884 55555 8999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 012209 138 GVQLSQGLSFAFTAIKYVR 156 (468)
Q Consensus 138 Gf~aGigl~I~~~ql~~~l 156 (468)
|...-.--.|...+++.+.
T Consensus 335 g~~i~~fg~i~~~Gi~~l~ 353 (428)
T PRK10720 335 GVSLLLYGVIGASGIRVLI 353 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888888889998874
No 30
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=56.57 E-value=26 Score=37.73 Aligned_cols=82 Identities=24% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHHhhh-c------------CCcchHHHHHHHHHHHHHH
Q 012209 356 VFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMASRD-M------------NTKEESFVMLVCAAVSLTG 422 (468)
Q Consensus 356 vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~~~~-~------------~~~~~~~v~~~t~~~tl~~ 422 (468)
+.+|++..++..++. ..+.+++|.-+.|.+++++|++|+...-+ . .+.+...+.++|...+++.
T Consensus 113 i~ag~~~~li~~~~~---~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~ 189 (451)
T COG2233 113 IAAGLVYFLISPIVK---IRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLI 189 (451)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHH
Confidence 344444444333332 05778999999999999999999854211 0 0122233444444444331
Q ss_pred ----------hhHHHHHHHHHHHHHHHH
Q 012209 423 ----------SSAALGFCCGILLFLLLK 440 (468)
Q Consensus 423 ----------~~i~~Gi~vGi~~~~~l~ 440 (468)
.++..|+++|.++++.+-
T Consensus 190 ~~f~~g~~~~i~ILiGlv~G~~la~~~G 217 (451)
T COG2233 190 NRFGKGFLRRIPILIGLVVGYLLALFMG 217 (451)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 146777777777777654
No 31
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=55.00 E-value=67 Score=34.43 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHH
Q 012209 60 TTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGV 139 (468)
Q Consensus 60 ~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf 139 (468)
.++..-|+.+++.|++.+.|...-..|... +.++ +..-+.+ ...+|++++++|++.=-.-+..-||.||+.|.
T Consensus 279 rgi~~dGi~s~laglfg~~p~tt~sqNvGv-i~~T---gV~SR~v---~~~aa~ilillgl~PK~~alia~IP~pVlGg~ 351 (433)
T PRK11412 279 RSFVATGFMTLITVPLAVIPFSPFVSSIGL-LTQT---GDYRRRS---FIYGSVMCLLVALIPALTRLFCSIPLPVSSAV 351 (433)
T ss_pred cchhhccHHHHHHHhcCCCCCCchhhhhhh-hhhc---CCchhHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777888888888776665332333221 1222 2222333 35668888888987444445999999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q 012209 140 QLSQGLSFAFTAIKYVR 156 (468)
Q Consensus 140 ~aGigl~I~~~ql~~~l 156 (468)
+.-.--.|+..+++.+.
T Consensus 352 ~~~~Fg~I~~~Gi~~l~ 368 (433)
T PRK11412 352 MLVSYLPLLGSALVFSQ 368 (433)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888888888888764
No 32
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=53.01 E-value=61 Score=34.34 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=60.1
Q ss_pred HHHhCCCh--hhHHHHHHHHHHHHHHhcCCcccch-hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHHH
Q 012209 51 TLVSNLDL--STTLIFTSLYNIATGLLFGLPMPVQ-PMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLT-GLMSF 126 (468)
Q Consensus 51 a~~aGlpp--~~~l~~~gl~~ii~g~~~~~pl~v~-P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~-rlg~l 126 (468)
...+|-++ ...+..+|+.+++.+.+.+.+.-++ +++ ++...+..+.++..=..+++..|++.+++|++ .....
T Consensus 247 l~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaita---Aic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~ 323 (395)
T TIGR00843 247 LKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITA---AICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITA 323 (395)
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhH---HHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455433 3456678999999888777665443 122 22233222344445556789999999999999 66666
Q ss_pred HhhccChhHHHHHHHHHHH
Q 012209 127 FYRFIPLPVVRGVQLSQGL 145 (468)
Q Consensus 127 l~~~Ip~pVi~Gf~aGigl 145 (468)
+...+|..++.. ++|.++
T Consensus 324 l~~~~P~~li~~-laGlAl 341 (395)
T TIGR00843 324 LFAALPKELIAA-LAGLAL 341 (395)
T ss_pred HHHHCCHHHHHH-HHHHHH
Confidence 689999988764 577776
No 33
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=52.59 E-value=63 Score=31.74 Aligned_cols=82 Identities=28% Similarity=0.378 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhH
Q 012209 56 LDLSTTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPV 135 (468)
Q Consensus 56 lpp~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pV 135 (468)
.|+-.-+.+.|+.+++.+++.+.|..-+...... ....+ .-+. .+++++|++.++.-++ +..+ .+++|.++
T Consensus 179 ~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~--~~~~G-a~t~----~s~~~~~~~~l~~l~~-~~~~-l~~iP~~~ 249 (280)
T PF00916_consen 179 IDPNQELIALGLANIVSGLFGGMPGSGSFSRSAV--NYRAG-ARTR----LSGLISALFVLLVLLF-LAPL-LAYIPKAV 249 (280)
T ss_pred CCcHHHHHHhhhccccchhhcccccccccccchH--HHhcC-ccee----ehhHHHHHHHHHHHHH-HHHH-HHHHHHHH
Confidence 5566678888999999999999886543322111 11111 1111 2334444444333222 2345 79999999
Q ss_pred HHHHHHHHHHH
Q 012209 136 VRGVQLSQGLS 146 (468)
Q Consensus 136 i~Gf~aGigl~ 146 (468)
..|++.-+++.
T Consensus 250 La~ili~~~~~ 260 (280)
T PF00916_consen 250 LAAILIVVGIS 260 (280)
T ss_pred HHHHHHHHHHh
Confidence 99988877775
No 34
>PRK11660 putative transporter; Provisional
Probab=47.99 E-value=3.8e+02 Score=29.63 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=50.6
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhH
Q 012209 56 LDLSTTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPV 135 (468)
Q Consensus 56 lpp~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pV 135 (468)
.|+-.-+.+.|+.+++.+++.+.|..-+..-. ++....+ +.+. .+++++|++.+ +.++-+..+ .+++|.++
T Consensus 311 ~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srS--a~n~~aG-arT~----la~iv~a~~~l-l~ll~l~~l-l~~iP~~v 381 (568)
T PRK11660 311 HSANSELVGQGLGNIVAPFFGGITATAAIARS--AANVRAG-ATSP----ISAVIHALLVL-LALLVLAPL-LSYLPLSA 381 (568)
T ss_pred CCCcHHHHHHhHHHHHHHHhCcccccchHHHH--HHHHhcC-CCcH----HHHHHHHHHHH-HHHHHHHHH-HHhCcHHH
Confidence 44555677889999999998888864332111 1222221 1221 23344444332 233333455 89999999
Q ss_pred HHHHHHHHHHHHH
Q 012209 136 VRGVQLSQGLSFA 148 (468)
Q Consensus 136 i~Gf~aGigl~I~ 148 (468)
+.|++.-+++.+.
T Consensus 382 La~ili~~~~~m~ 394 (568)
T PRK11660 382 MAALLLMVAWNMS 394 (568)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988887764
No 35
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=47.78 E-value=1.5e+02 Score=31.31 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=58.9
Q ss_pred HhCCChh--hHHHHHHHHHHHHHHhcCCcccch-hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh--HHHH
Q 012209 53 VSNLDLS--TTLIFTSLYNIATGLLFGLPMPVQ-PMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGL--MSFF 127 (468)
Q Consensus 53 ~aGlpp~--~~l~~~gl~~ii~g~~~~~pl~v~-P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rl--g~ll 127 (468)
..|.+|. ..+..+|+.+++.+.+.+.+..++ ++++ +...+..+.+++.=..+++.+|++.+++|++.- -.+
T Consensus 233 a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaA---Ic~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l- 308 (378)
T PF03594_consen 233 AAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAA---ICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVAL- 308 (378)
T ss_pred HcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHH---HHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 3565544 456678999999998777765443 3333 333333355666667778999999999999864 233
Q ss_pred hhccChhHHHHHHHHHHH
Q 012209 128 YRFIPLPVVRGVQLSQGL 145 (468)
Q Consensus 128 ~~~Ip~pVi~Gf~aGigl 145 (468)
...+|++++. .++|+++
T Consensus 309 ~~~lP~~li~-~lAGLAL 325 (378)
T PF03594_consen 309 FAALPPALIA-ALAGLAL 325 (378)
T ss_pred HHhCCHHHHH-HHHHHHH
Confidence 5677887765 4577776
No 36
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=46.09 E-value=1.8e+02 Score=31.00 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhccc-hhhHhhhcChHHHHHHHHHHHHHHHHH
Q 012209 353 MAVVFLGLGKLAIGLVFGNS-FMRILGQFPIGILGVLLLFAGIELAMA 399 (468)
Q Consensus 353 la~vv~g~~~ll~~L~~~~~-~~~ll~~iP~avLaaili~ag~~L~~~ 399 (468)
.+.+++|++.+++.++.... .--+..++|.-+.|.+++.+|+.++..
T Consensus 114 ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~v 161 (429)
T TIGR03616 114 GGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 45666666665555543100 013668899999999999999999854
No 37
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=45.59 E-value=2.7e+02 Score=28.62 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred ccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCC----cchhHHHHHHHHHHHHHHHhccchhhHhhhcChHH
Q 012209 309 ELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGA----RSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGI 384 (468)
Q Consensus 309 ~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~Ga----rT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~av 384 (468)
-+++++.++--++.|++|+++.|..+.......-++.+.-. +.-+.+++++++-..+.+++. ...-+|.+.
T Consensus 18 al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~~i~-----t~~glPvSt 92 (326)
T PF01384_consen 18 ALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWLLIA-----TWLGLPVST 92 (326)
T ss_pred ccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHH-----HHhCCCchH
Confidence 67788888888999999999988888776555555544322 122445555554434334443 567789665
Q ss_pred HHHHH-HHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 012209 385 LGVLL-LFAGIELAMASRDMNTKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKLRS 443 (468)
Q Consensus 385 Laail-i~ag~~L~~~~~~~~~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~~~ 443 (468)
.=+++ -.+|..+.....+.-++.+.+ .-.+... ..+...|..++.+++.++++..
T Consensus 93 ThalvGal~G~~l~~~g~~~v~w~~~~---~~I~~~w-v~sPlia~~~a~~l~~~~~~~~ 148 (326)
T PF01384_consen 93 THALVGALIGAGLASGGFSAVNWSKGL---LKIVLSW-VISPLIAFILAYILYRLIRRIF 148 (326)
T ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 235666665432111222211 1111222 2477788888888877665543
No 38
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.89 E-value=1.6e+02 Score=31.80 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHhhhHHHHhhccChhHHHHHHHH-HHHHHHHhhhhhhhcCC
Q 012209 118 LGLTGLMSFFYRFIPLPVVRGVQLS-QGLSFAFTAIKYVRFNQ 159 (468)
Q Consensus 118 lGl~rlg~ll~~~Ip~pVi~Gf~aG-igl~I~~~ql~~~lg~~ 159 (468)
+.++++-.. ...-.++++.|..++ .|+.+..-+++...|..
T Consensus 150 l~vfgl~~~-~~~~~~s~lK~l~~~~lGl~La~VGiD~~sG~~ 191 (504)
T COG3333 150 LMVFGLVSV-AGLSGGSLLKGLASAALGLLLATVGIDPISGVP 191 (504)
T ss_pred HHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHcCcCccCCCc
Confidence 344455443 555666777777654 57888888888777764
No 39
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=40.64 E-value=70 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=27.6
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012209 405 TKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKL 441 (468)
Q Consensus 405 ~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~ 441 (468)
+.+|..++++.++..+......+|+++|++++..+++
T Consensus 19 ~~De~~~~~~~~~~gi~~~~~~~g~i~g~~~~~~~~k 55 (95)
T PF07178_consen 19 PMDEFIPALILFVIGILSGHFLIGLILGIVLWWGYRK 55 (95)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3567777777777777655788999999998876544
No 40
>PF15179 Myc_target_1: Myc target protein 1
Probab=37.98 E-value=60 Score=30.58 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccccccC
Q 012209 423 SSAALGFCCGILLFLLLKLRSMECSRFGVSKFWSK 457 (468)
Q Consensus 423 ~~i~~Gi~vGi~~~~~l~~~~~~~~~~~~~~~~~~ 457 (468)
.++.+|+++|.+++.++.+-.++|.+.-..|+..+
T Consensus 27 vSm~iGLviG~li~~LltwlSRRRASa~Isr~s~~ 61 (197)
T PF15179_consen 27 VSMAIGLVIGALIWALLTWLSRRRASARISRWSSS 61 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccCcc
Confidence 47888999999998887776555554433555443
No 41
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=32.64 E-value=5.9e+02 Score=26.51 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccChhHHHHH
Q 012209 60 TTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLTGLMSFFYRFIPLPVVRGV 139 (468)
Q Consensus 60 ~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~rlg~ll~~~Ip~pVi~Gf 139 (468)
-++..-|+.+++.+++...|...-..|+.. ..... -.+ +. ..+.++++.++++++---.-+...||.||+.|.
T Consensus 271 r~l~~dg~~~~l~gl~G~~~~t~~~en~g~-i~~t~--v~S-r~---~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~ 343 (389)
T PF00860_consen 271 RGLLADGLGTILAGLFGTSPTTTYSENAGG-IAATG--VAS-RR---VGLTAGVILILFGLSPKFAPLFASIPSPVIGGP 343 (389)
T ss_dssp HHHHHHHHHHHHHHHHT---EEE-HHHHHH-HHHHT--B---HH---HHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHH
T ss_pred ccceeeeeeeeechhhcCCCCccccccchh-hhhhc--ccc-ce---eeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 477778999999998777776544444432 22222 112 22 235566666777765443444899999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q 012209 140 QLSQGLSFAFTAIKYVR 156 (468)
Q Consensus 140 ~aGigl~I~~~ql~~~l 156 (468)
..=.--.++.++++.+-
T Consensus 344 ~lv~~g~i~~~gi~~i~ 360 (389)
T PF00860_consen 344 LLVLFGMIMMSGIRNID 360 (389)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHhhe
Confidence 88777788888888763
No 42
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=30.58 E-value=7.2e+02 Score=26.83 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCChhhhH-HHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCcccc
Q 012209 267 KITWDDWK-VGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVC 335 (468)
Q Consensus 267 ~p~~~~~~-~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~ 335 (468)
.|+|+.+. ...+..++.|...++-...-....-+ .+. +| +-|..+.-...++.|..-++.-|.-+-
T Consensus 204 ~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs-SYL-~k-~~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 204 KPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS-SYL-SK-KSDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred cCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH-hhc-Cc-ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45554332 23455666675543322111111122 233 33 456677788889999999887775443
No 43
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=27.44 E-value=1.2e+02 Score=32.91 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=31.0
Q ss_pred hhHHhhhhhhhhhH-HHHHHHHHHHHHHh-CCChhhHHHHHHHHHHH----HHHhcCCc
Q 012209 27 HSLVSELSGAVGDL-GTFIPIVLTLTLVS-NLDLSTTLIFTSLYNIA----TGLLFGLP 79 (468)
Q Consensus 27 ~~~~~el~g~l~~~-~t~lP~~~a~a~~a-Glpp~~~l~~~gl~~ii----~g~~~~~p 79 (468)
.-...+++++.|.+ +.++|..++..... |- +..+++...+++.+ .=++|.++
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~-~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGS-PVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33556777777777 57889999977643 54 44445544444333 23456655
No 44
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=3.2e+02 Score=25.90 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=30.3
Q ss_pred HhhhcChHHHHHHHHHHHHHHHHHhhh---------cCCcchHHHHHHHHHHHHHHhh----HHHHHHHHHHH
Q 012209 376 ILGQFPIGILGVLLLFAGIELAMASRD---------MNTKEESFVMLVCAAVSLTGSS----AALGFCCGILL 435 (468)
Q Consensus 376 ll~~iP~avLaaili~ag~~L~~~~~~---------~~~~~~~~v~~~t~~~tl~~~~----i~~Gi~vGi~~ 435 (468)
++.. |...+.-+.+++++-.+...++ +++++-+....+..+..+++.+ +.+++.+|+++
T Consensus 85 Li~~-P~~Livl~~lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~v 156 (187)
T KOG3142|consen 85 LITH-PLSLIVLLALVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVV 156 (187)
T ss_pred HHHh-HHHHHHHHHHHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHH
Confidence 5555 7777766667777776654432 2234444333333333333344 55555555554
No 45
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=26.77 E-value=1.5e+02 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=27.6
Q ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012209 405 TKEESFVMLVCAAVSLTGSSAALGFCCGILLFLLLKL 441 (468)
Q Consensus 405 ~~~~~~v~~~t~~~tl~~~~i~~Gi~vGi~~~~~l~~ 441 (468)
+.+|.+++++.+...+.......|+++|++++..+++
T Consensus 25 ~~DE~~~~~~~~~~Gi~~~~~l~g~i~g~~~~~~~r~ 61 (101)
T PRK13707 25 PLDELIPAAICIGWGITTSKYLFGIIAAVLVWFGIRK 61 (101)
T ss_pred eHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Confidence 4567788877777777645688899999998776544
No 46
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=26.31 E-value=6.2e+02 Score=25.38 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=16.9
Q ss_pred hhHhhhcChHHH------HHHHHHHHHHHHH
Q 012209 374 MRILGQFPIGIL------GVLLLFAGIELAM 398 (468)
Q Consensus 374 ~~ll~~iP~avL------aaili~ag~~L~~ 398 (468)
-.++..+|.-++ |+++-.+|+.|.-
T Consensus 167 ~~~l~aiP~~l~~GL~vaGgmlpavGfAmll 197 (265)
T COG3715 167 QSLLDAIPEWLTNGLAVAGGMLPAVGFAMLL 197 (265)
T ss_pred HHHHHhchHHHhhhhhHhcchhHHHHHHHHH
Confidence 356788886544 6667777887753
No 47
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.90 E-value=5.1e+02 Score=27.32 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHHHHHHHH-HH----------HhCCC--hhhHHHHHHHHHHHHHHhcCCcccchhHHHHH-HHHHhcCCCCCHHHHH
Q 012209 40 LGTFIPIVLTL-TL----------VSNLD--LSTTLIFTSLYNIATGLLFGLPMPVQPMKSIA-AVAVSESPHLTTSQIA 105 (468)
Q Consensus 40 ~~t~lP~~~a~-a~----------~aGlp--p~~~l~~~gl~~ii~g~~~~~pl~v~P~~aia-a~~i~~~~~~~~~~~~ 105 (468)
+...+|+-+-- +. .+|-. |.--+.++|+.++.++.+.+..+..+ ++. ++......+.+..+=.
T Consensus 224 l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLa---AItAAic~gpdaHpD~~rry 300 (402)
T COG3135 224 LSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLA---AITAAICTGPDAHPDPARRY 300 (402)
T ss_pred HHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHH---HHHHHHhcCCCCCCChHHHH
Confidence 34567876652 21 13433 33455678999999888777665443 222 2233333456777777
Q ss_pred HHHHHHHHHHHHHHHhhhHHH-HhhccChhHHHHHHHHHHHH
Q 012209 106 AAGLCTAATLFLLGLTGLMSF-FYRFIPLPVVRGVQLSQGLS 146 (468)
Q Consensus 106 ~a~ll~Gvi~lllGl~rlg~l-l~~~Ip~pVi~Gf~aGigl~ 146 (468)
.+++++|++-+++|++.--.. +.-.+|.+.+ -.++|+++.
T Consensus 301 ~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li-~~lAGLALl 341 (402)
T COG3135 301 TAALVAGIFYLLAGLFGGALVGLMAALPASLI-AALAGLALL 341 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHH-HHHHHHHHH
Confidence 888999999999999875321 1455677765 467888773
No 48
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=20.78 E-value=8.5e+02 Score=24.35 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=11.7
Q ss_pred cChhHHHHHHHHHHH
Q 012209 131 IPLPVVRGVQLSQGL 145 (468)
Q Consensus 131 Ip~pVi~Gf~aGigl 145 (468)
+-+|++.|+..|.-+
T Consensus 29 ~~rPiv~g~lvGLIl 43 (265)
T TIGR00822 29 THRPLIACTLVGLIL 43 (265)
T ss_pred hcCcHHHHHHHHHHh
Confidence 468999999888744
Done!