Query 012209
Match_columns 468
No_of_seqs 184 out of 1280
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.9 1.7E-24 5.9E-29 226.3 33.3 338 54-440 39-407 (429)
2 3qe7_A Uracil permease; uracil 78.2 31 0.0011 35.3 14.1 89 59-155 264-353 (429)
3 1bts_A BAND 3 anion transport 24.1 42 0.0014 20.5 1.9 24 312-335 3-26 (26)
4 3gia_A Uncharacterized protein 17.7 6.8E+02 0.023 24.2 10.7 36 353-393 322-357 (444)
5 3qnq_A PTS system, cellobiose- 7.6 3.2E+02 0.011 27.8 4.3 18 424-441 145-162 (442)
6 2jwa_A Receptor tyrosine-prote 6.4 6.7E+02 0.023 17.1 4.4 17 427-443 23-39 (44)
7 2fyu_K Ubiquinol-cytochrome C 5.4 4.3E+02 0.015 19.0 2.7 32 125-157 12-43 (56)
8 2i9f_A Nucleocapsid; assembly, 4.8 2.1E+02 0.0072 20.5 0.7 16 17-32 5-20 (69)
9 4f35_D Transporter, NADC famil 4.5 2E+03 0.069 21.2 8.2 25 38-62 367-391 (449)
10 2a65_A Leutaa, Na(+):neurotran 4.1 2.6E+03 0.09 21.3 10.1 138 268-423 233-391 (519)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.94 E-value=1.7e-24 Score=226.33 Aligned_cols=338 Identities=13% Similarity=0.139 Sum_probs=220.8
Q ss_pred hCCChhhHHHHHHHHHHHHHHhcCCcccc--hhHHHH-HHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHh--hhH-HH
Q 012209 54 SNLDLSTTLIFTSLYNIATGLLFGLPMPV--QPMKSI-AAV-AVSESPHLTTSQIAAAGLCTAATLFLLGLT--GLM-SF 126 (468)
Q Consensus 54 aGlpp~~~l~~~gl~~ii~g~~~~~pl~v--~P~~ai-aa~-~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~--rlg-~l 126 (468)
-|+|+.++++.+|+.+++.+++.|.++|. ++.-+. +.. ++.. ++++++.++.+++|++++++|.+ |+| ++
T Consensus 39 lGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~---~g~~~~~gavi~aGli~ill~~~~~~~g~~~ 115 (429)
T 3qe7_A 39 FHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP---LGYEVALGGFIMCGVLFCLVSFIVKKAGTGW 115 (429)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG---GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 39999999999999999999876665543 453222 111 1222 67999999999999999999999 887 56
Q ss_pred HhhccChhHHHHHHHHHHHHHHHhhhhhhhcCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q 012209 127 FYRFIPLPVVRGVQLSQGLSFAFTAIKYVRFNQDFATSKSTSSRPWLGLDGLLLALTAILFLVLTTGSGDYGTHNQEFDI 206 (468)
Q Consensus 127 l~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~l~~~~~~~~~~~~~~~~ 206 (468)
+.|++|+.|+..|++.+|+.++-.++++.-+... ..++.++..+.+++.++++++++.
T Consensus 116 l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~--------~~~~~~~~~~~la~~tl~iii~~~-------------- 173 (429)
T 3qe7_A 116 LDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA--------EGQTPDSKTIIISITTLAVTVLGS-------------- 173 (429)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB--------TTBCCCHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC--------CCccccHHHHHHHHHHHHHHHHHH--------------
Confidence 6999998888889999999999888886532210 011222345667777777766433
Q ss_pred CCCCCCccchhhhhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccCccc-cC-CCcccccCCChhhhHHHHHHHhhhh
Q 012209 207 DNTDDVNDSGRRLRLHTRLRILSAIPAALVVFLLGLILCFIRDPTIFNDLR-FG-PSEISVLKITWDDWKVGFLRAAIPQ 284 (468)
Q Consensus 207 ~~~~~~~~~~~~~~~~~r~~~~~~iP~~Li~vvvg~~l~~~~~~~~~~~~~-~g-~~~p~~~~p~~~~~~~~~l~~~l~~ 284 (468)
|+.|...+.++.|+++++++++++.++..+...+. .+ ...|.+..|+|+ |. .+...++.
T Consensus 174 ----------------~~~kg~~~~~aiLigivvg~~~a~~~G~~d~~~v~~a~~~~lP~~~~P~f~-~~--~i~~i~~i 234 (429)
T 3qe7_A 174 ----------------VLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFE-WF--AILTILPA 234 (429)
T ss_dssp ----------------HSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHSCSSCCCCCCCCCCC-HH--HHHHHTHH
T ss_pred ----------------HHhcccchhhHHHHHHHHHHHHHHHhcCCCcccccccccccccCCCCCccc-HH--HHHHHHHH
Confidence 11122334578999999999999877543222211 00 134555556553 43 33334444
Q ss_pred HHHHHHHHHH---HHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhcCCCcchhHHHHHHHH
Q 012209 285 IPLSVLNSVI---AVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYRFGARSGMAVVFLGLG 361 (468)
Q Consensus 285 ~~lt~~~svi---a~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~~GarT~la~vv~g~~ 361 (468)
...++.+++- ++....++ +.++ +.+.|||+.++|++|+++++||++|.|.+.....++...|++||.+.+++|++
T Consensus 235 ~lV~~~Eslg~~~av~~~~g~-~~~~-~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~ 312 (429)
T 3qe7_A 235 ALVVIAEHVGHLVVTANIVKK-DLLR-DPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIF 312 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-CTCC-CCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCC-CCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHH
Confidence 4444444432 23323222 2122 56789999999999999999999999975444456677899999999999998
Q ss_pred HHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHH-----Hh--hhcC--CcchHHHHHHHHHHHHH----------H
Q 012209 362 KLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAM-----AS--RDMN--TKEESFVMLVCAAVSLT----------G 422 (468)
Q Consensus 362 ~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~-----~~--~~~~--~~~~~~v~~~t~~~tl~----------~ 422 (468)
++++.++ |.+.++++.+|.+++|++.++ .+.++. .. ++.+ ++++.++.-+.....+- .
T Consensus 313 lillgl~--pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~~~ 389 (429)
T 3qe7_A 313 AILLSCV--GKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAEL 389 (429)
T ss_dssp HHHHTCC--HHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSCCC
T ss_pred HHHHHHH--HHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhcc
Confidence 8655432 344589999999999997543 455532 22 2222 23444444443333331 1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 012209 423 SSAALGFCCGILLFLLLK 440 (468)
Q Consensus 423 ~~i~~Gi~vGi~~~~~l~ 440 (468)
.++..|-.+++++..++.
T Consensus 390 ~gi~~~~~~ai~ln~~l~ 407 (429)
T 3qe7_A 390 KGMALATIVGIGLSLIFK 407 (429)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 146777777777777764
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=78.19 E-value=31 Score=35.27 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHHHHhhccChhHHH
Q 012209 59 STTLIFTSLYNIATGLLFGLPMPVQPMKSIAAVAVSESPHLTTSQIAAAGLCTAATLFLLGLT-GLMSFFYRFIPLPVVR 137 (468)
Q Consensus 59 ~~~l~~~gl~~ii~g~~~~~pl~v~P~~aiaa~~i~~~~~~~~~~~~~a~ll~Gvi~lllGl~-rlg~ll~~~Ip~pVi~ 137 (468)
.-++..-|+.+++.+++.+.|...--.|... ...+. -.+ +. +...+|++++++|++ +++.+ .+.+|.||+.
T Consensus 264 ~r~l~adGla~i~~glfGg~p~Tt~~en~g~-i~~tg--~~s-r~---~~~~ag~~lillgl~pk~~al-~~~IP~~vlg 335 (429)
T 3qe7_A 264 HRSMFANGLSTVISGFFGSTPNTTYGENIGV-MAITR--VYS-TW---VIGGAAIFAILLSCVGKLAAA-IQMIPLPVMG 335 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEECHHHHHH-HHHHT--BCC-HH---HHHHHHHHHHHHTCCHHHHHH-HTTSCHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCcchHHHhHHH-HHhcC--Ccc-hH---HHHHHHHHHHHHHHHHHHHHH-HHHccHHHHH
Confidence 3578888999999999888886544344322 22332 223 22 346788888999987 67776 9999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 012209 138 GVQLSQGLSFAFTAIKYV 155 (468)
Q Consensus 138 Gf~aGigl~I~~~ql~~~ 155 (468)
|...-.--.|...+++.+
T Consensus 336 g~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 336 GVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 976555445666666655
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=24.08 E-value=42 Score=20.54 Aligned_cols=24 Identities=21% Similarity=0.269 Sum_probs=16.8
Q ss_pred cchhHHHHhHHHHHhhhhCCcccc
Q 012209 312 ATKVSISVGVMNFVGCWFGAMPVC 335 (468)
Q Consensus 312 ~n~el~a~GlaNl~~~~fGg~p~~ 335 (468)
+++.+++.+++-++-++|++-|.+
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhcccCC
Confidence 456678899999999999998863
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=17.66 E-value=6.8e+02 Score=24.24 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHH
Q 012209 353 MAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAG 393 (468)
Q Consensus 353 la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag 393 (468)
.+-++.+++.+++.++ . ++-...+....+.++.+..
T Consensus 322 ~a~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~~~ 357 (444)
T 3gia_A 322 EGLYITSALGVLFALL-F----NMEGVASITSAVFMVIYLF 357 (444)
T ss_dssp HHHHHHHHHHHHHHHH-S----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-c----CHHHHHHHHHHHHHHHHHH
Confidence 4455555555333333 3 3444455555555444443
No 5
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=7.63 E-value=3.2e+02 Score=27.79 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012209 424 SAALGFCCGILLFLLLKL 441 (468)
Q Consensus 424 ~i~~Gi~vGi~~~~~l~~ 441 (468)
++..|+.+|++...+++.
T Consensus 145 GlF~AIIvglls~~Iy~~ 162 (442)
T 3qnq_A 145 GLFVAMIIAIISTEIYRF 162 (442)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777665543
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.39 E-value=6.7e+02 Score=17.09 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012209 427 LGFCCGILLFLLLKLRS 443 (468)
Q Consensus 427 ~Gi~vGi~~~~~l~~~~ 443 (468)
.-+.+|+.+.+.+++|+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 44445555555454443
No 7
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=5.39 E-value=4.3e+02 Score=18.97 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHhhhhhhhc
Q 012209 125 SFFYRFIPLPVVRGVQLSQGLSFAFTAIKYVRF 157 (468)
Q Consensus 125 ~ll~~~Ip~pVi~Gf~aGigl~I~~~ql~~~lg 157 (468)
+.+.+++|....-|..+|++++....+ +.++.
T Consensus 12 ~~~~~w~psa~~~Gaaa~v~~ly~tdw-r~IL~ 43 (56)
T 2fyu_K 12 QLARNWVPTASLWGAVGAVGLVWATDW-RLILD 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHT
T ss_pred HHHHHHhhhhhhhhhhhhhheeeeccH-HHHHh
Confidence 345789999999999999999888774 66653
No 8
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=4.78 E-value=2.1e+02 Score=20.52 Aligned_cols=16 Identities=44% Similarity=0.920 Sum_probs=10.4
Q ss_pred ccCCCchhhhhhHHhh
Q 012209 17 HHNHRPGRRKHSLVSE 32 (468)
Q Consensus 17 ~~~~~~~~~~~~~~~e 32 (468)
||.|.++++|.|+...
T Consensus 5 hhhhepgdlrhdlnqq 20 (69)
T 2i9f_A 5 HHHHEPGDLRHDLNQQ 20 (69)
T ss_dssp -CCCCCSSGGGGCCHH
T ss_pred cccCCCccccchhhHH
Confidence 4555778888887543
No 9
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=4.49 E-value=2e+03 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHhCCChhhHH
Q 012209 38 GDLGTFIPIVLTLTLVSNLDLSTTL 62 (468)
Q Consensus 38 ~~~~t~lP~~~a~a~~aGlpp~~~l 62 (468)
+...+++|....++...|+||..-.
T Consensus 367 a~~~~l~Pi~~~~a~~~g~~p~~~~ 391 (449)
T 4f35_D 367 ASAALLIPVFATVAEAFGMSPVLLS 391 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344688999999999999998633
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=4.08 E-value=2.6e+03 Score=21.29 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred CChhhhH-HHHHHHhhhhHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHhHHHHHhhhhCCccccchhhhhhhhhc
Q 012209 268 ITWDDWK-VGFLRAAIPQIPLSVLNSVIAVCKLSGDLFPDREELSATKVSISVGVMNFVGCWFGAMPVCHGAGGLAGQYR 346 (468)
Q Consensus 268 p~~~~~~-~~~l~~~l~~~~lt~~~svia~~~l~~~l~~~~~~~~~n~el~a~GlaNl~~~~fGg~p~~~s~srsa~n~~ 346 (468)
|+|+.+. ...+..+..|...++....-......+ +-++ +-|..|+.+.....|...+++.|+.+-.-.+=.+.+.+
T Consensus 233 Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~S--Y~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 233 PDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYAS--YVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHT--TSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhc--ccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q ss_pred -------CC-------------CcchhHHHHHHHHHHHHHHHhccchhhHhhhcChHHHHHHHHHHHHHHHHHhhhcCCc
Q 012209 347 -------FG-------------ARSGMAVVFLGLGKLAIGLVFGNSFMRILGQFPIGILGVLLLFAGIELAMASRDMNTK 406 (468)
Q Consensus 347 -------~G-------------arT~la~vv~g~~~ll~~L~~~~~~~~ll~~iP~avLaaili~ag~~L~~~~~~~~~~ 406 (468)
+| ++=+.+.+++.+++ +.+++++ +...+...=.-...-..+.+.+
T Consensus 310 ~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF-~~l~~ag--------------ltS~i~~~E~~vt~l~D~~~~~ 374 (519)
T 2a65_A 310 NAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWF-FLLFFAG--------------LTSSIAIMQPMIAFLEDELKLS 374 (519)
T ss_dssp HHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHH-HHHHHHH--------------HHHHHHHHHHHHHHHHHTSCCC
T ss_pred chHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHH-HHHHHHH--------------HHHHHHHhhHhHHHHHHhhCCc
Q ss_pred chHHHHHHHHHHHHHHh
Q 012209 407 EESFVMLVCAAVSLTGS 423 (468)
Q Consensus 407 ~~~~v~~~t~~~tl~~~ 423 (468)
++..+..++.+.-+.+.
T Consensus 375 R~~~~~~v~~~~fllgl 391 (519)
T 2a65_A 375 RKHAVLWTAAIVFFSAH 391 (519)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Done!