Query 012211
Match_columns 468
No_of_seqs 167 out of 938
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01826 CofD_related conserv 100.0 5.5E-85 1.2E-89 656.4 32.3 307 62-452 1-309 (310)
2 cd07044 CofD_YvcK Family of Co 100.0 1.7E-81 3.7E-86 632.3 31.2 307 62-450 1-309 (309)
3 cd07187 YvcK_like family of mo 100.0 2.5E-81 5.3E-86 631.3 32.3 305 62-450 1-308 (308)
4 PF01933 UPF0052: Uncharacteri 100.0 4.2E-72 9.1E-77 563.3 20.6 283 62-423 1-292 (300)
5 COG0391 Uncharacterized conser 100.0 5.6E-70 1.2E-74 547.9 22.1 312 57-449 5-322 (323)
6 cd07186 CofD_like LPPG:FO 2-ph 100.0 1.1E-63 2.4E-68 499.0 24.5 290 62-449 1-302 (303)
7 TIGR01819 F420_cofD LPPG:FO 2- 100.0 5.4E-63 1.2E-67 491.9 22.8 284 63-449 1-296 (297)
8 PRK13606 LPPG:FO 2-phospho-L-l 100.0 2.5E-61 5.4E-66 481.6 26.3 290 60-453 1-302 (303)
9 PRK06719 precorrin-2 dehydroge 63.2 7.7 0.00017 35.8 3.4 32 57-88 11-42 (157)
10 cd00466 DHQase_II Dehydroquina 58.8 36 0.00078 31.3 6.8 42 309-357 54-102 (140)
11 PF01220 DHquinase_II: Dehydro 57.3 16 0.00035 33.5 4.3 42 309-357 59-103 (140)
12 PTZ00058 glutathione reductase 56.1 10 0.00022 42.3 3.3 32 58-90 47-78 (561)
13 PRK05395 3-dehydroquinate dehy 55.6 19 0.00041 33.3 4.5 42 309-357 56-104 (146)
14 PF13241 NAD_binding_7: Putati 53.8 9.8 0.00021 32.3 2.2 36 57-92 5-40 (103)
15 PRK13015 3-dehydroquinate dehy 52.7 21 0.00045 33.1 4.2 42 309-357 56-104 (146)
16 PTZ00318 NADH dehydrogenase-li 51.3 13 0.00028 39.4 3.1 31 58-88 9-39 (424)
17 TIGR01470 cysG_Nterm siroheme 51.3 15 0.00033 35.4 3.3 33 58-90 8-40 (205)
18 PRK06718 precorrin-2 dehydroge 49.6 18 0.00038 34.8 3.5 32 57-88 8-39 (202)
19 PF00070 Pyr_redox: Pyridine n 49.1 18 0.00039 28.8 3.0 33 61-94 1-33 (80)
20 PLN00016 RNA-binding protein; 48.8 16 0.00035 37.9 3.3 34 57-90 50-88 (378)
21 PRK05562 precorrin-2 dehydroge 48.1 19 0.00041 35.5 3.5 37 57-93 23-59 (223)
22 PRK06567 putative bifunctional 46.6 30 0.00065 41.3 5.3 44 50-94 882-927 (1028)
23 PRK12770 putative glutamate sy 46.1 26 0.00057 36.0 4.4 42 45-88 6-47 (352)
24 COG1252 Ndh NADH dehydrogenase 45.4 21 0.00045 38.3 3.5 62 58-120 2-66 (405)
25 PF00551 Formyl_trans_N: Formy 45.1 28 0.0006 32.6 4.0 37 60-96 1-41 (181)
26 PF07992 Pyr_redox_2: Pyridine 42.5 21 0.00046 32.7 2.7 28 61-88 1-28 (201)
27 PRK04965 NADH:flavorubredoxin 42.0 26 0.00056 36.3 3.6 37 59-95 2-38 (377)
28 TIGR01088 aroQ 3-dehydroquinat 41.9 43 0.00094 30.8 4.5 42 309-357 54-102 (141)
29 PF01408 GFO_IDH_MocA: Oxidore 41.8 40 0.00088 28.4 4.2 57 61-118 2-59 (120)
30 PTZ00494 tuzin-like protein; P 40.7 61 0.0013 35.8 6.1 74 40-115 375-455 (664)
31 PRK01581 speE spermidine synth 40.0 26 0.00056 37.2 3.2 20 59-79 151-170 (374)
32 PF12953 DUF3842: Domain of un 39.4 19 0.00041 32.7 1.8 66 308-377 56-128 (131)
33 PRK13512 coenzyme A disulfide 39.4 26 0.00057 37.3 3.2 24 60-83 2-25 (438)
34 PRK07236 hypothetical protein; 38.3 33 0.00072 35.5 3.7 31 59-89 6-36 (386)
35 cd06183 cyt_b5_reduct_like Cyt 37.3 45 0.00097 31.6 4.2 33 60-92 105-143 (234)
36 cd00322 FNR_like Ferredoxin re 37.0 50 0.0011 30.8 4.4 36 58-93 96-136 (223)
37 PRK06847 hypothetical protein; 36.9 36 0.00079 34.7 3.7 30 59-88 4-33 (375)
38 COG1648 CysG Siroheme synthase 36.8 34 0.00074 33.3 3.3 35 57-91 10-44 (210)
39 PRK11749 dihydropyrimidine deh 36.2 36 0.00078 36.4 3.7 36 53-88 134-169 (457)
40 PF04820 Trp_halogenase: Trypt 36.1 24 0.00051 38.2 2.2 48 212-263 155-207 (454)
41 cd06193 siderophore_interactin 36.0 54 0.0012 31.7 4.6 36 59-94 120-157 (235)
42 COG0825 AccA Acetyl-CoA carbox 35.8 96 0.0021 32.1 6.3 147 282-454 121-288 (317)
43 cd06191 FNR_iron_sulfur_bindin 35.8 56 0.0012 31.2 4.6 36 59-94 102-142 (231)
44 PRK08163 salicylate hydroxylas 35.0 40 0.00087 34.8 3.7 30 59-88 4-33 (396)
45 TIGR00215 lpxB lipid-A-disacch 35.0 41 0.0009 35.2 3.8 31 59-89 5-39 (385)
46 PRK06753 hypothetical protein; 34.8 37 0.0008 34.7 3.4 29 60-88 1-29 (373)
47 PRK07364 2-octaprenyl-6-methox 34.6 42 0.0009 34.9 3.8 31 59-89 18-48 (415)
48 PF01494 FAD_binding_3: FAD bi 34.5 32 0.00069 34.0 2.7 33 61-93 3-35 (356)
49 PRK09932 glycerate kinase II; 34.4 50 0.0011 35.2 4.3 46 312-357 280-325 (381)
50 TIGR03609 S_layer_CsaB polysac 34.3 61 0.0013 32.3 4.8 23 308-330 56-78 (298)
51 PRK12810 gltD glutamate syntha 33.5 51 0.0011 35.5 4.3 34 55-88 139-172 (471)
52 PF08030 NAD_binding_6: Ferric 33.4 26 0.00057 31.2 1.8 21 61-81 3-23 (156)
53 PRK09564 coenzyme A disulfide 33.0 38 0.00082 35.8 3.2 29 60-88 1-31 (444)
54 PRK07538 hypothetical protein; 32.6 40 0.00087 35.3 3.3 29 60-88 1-29 (413)
55 PRK14138 NAD-dependent deacety 32.3 1.6E+02 0.0036 29.1 7.4 65 307-380 169-242 (244)
56 cd06216 FNR_iron_sulfur_bindin 32.2 68 0.0015 30.9 4.6 35 59-93 122-161 (243)
57 cd06187 O2ase_reductase_like T 32.1 58 0.0013 30.7 4.0 35 59-93 98-137 (224)
58 COG0528 PyrH Uridylate kinase 32.0 23 0.00051 35.2 1.3 34 59-92 124-161 (238)
59 cd06192 DHOD_e_trans_like FAD/ 31.8 66 0.0014 31.1 4.4 35 59-93 97-134 (243)
60 PRK01747 mnmC bifunctional tRN 31.8 57 0.0012 36.8 4.5 40 60-99 261-301 (662)
61 TIGR01373 soxB sarcosine oxida 31.7 63 0.0014 33.6 4.5 49 58-106 29-83 (407)
62 PF01564 Spermine_synth: Sperm 31.5 46 0.001 32.9 3.3 23 58-82 76-98 (246)
63 PRK07588 hypothetical protein; 31.2 44 0.00096 34.5 3.3 30 60-89 1-30 (391)
64 PRK09754 phenylpropionate diox 31.2 41 0.00089 35.2 3.0 26 59-84 3-28 (396)
65 PRK12831 putative oxidoreducta 31.1 58 0.0013 35.2 4.2 35 54-88 135-169 (464)
66 PRK15005 universal stress prot 30.7 83 0.0018 27.2 4.5 45 307-354 96-143 (144)
67 PRK06696 uridine kinase; Valid 30.3 1.4E+02 0.003 28.6 6.4 51 58-108 20-74 (223)
68 TIGR00640 acid_CoA_mut_C methy 30.1 59 0.0013 29.2 3.5 47 307-355 42-90 (132)
69 TIGR00045 glycerate kinase. Th 29.6 62 0.0013 34.5 4.0 46 312-357 279-324 (375)
70 PF12646 DUF3783: Domain of un 29.5 1.5E+02 0.0032 22.8 5.2 46 60-105 1-50 (58)
71 PLN02366 spermidine synthase 29.4 55 0.0012 33.7 3.5 21 59-81 92-112 (308)
72 COG0421 SpeE Spermidine syntha 29.1 71 0.0015 32.6 4.2 53 60-115 78-130 (282)
73 PRK05802 hypothetical protein; 29.0 68 0.0015 33.1 4.2 33 59-91 172-207 (320)
74 PRK10677 modA molybdate transp 28.6 78 0.0017 31.3 4.4 73 36-113 3-78 (257)
75 cd06211 phenol_2-monooxygenase 28.3 50 0.0011 31.8 2.9 33 59-91 109-146 (238)
76 COG0647 NagD Predicted sugar p 28.3 2.1E+02 0.0046 29.0 7.4 107 336-454 25-148 (269)
77 cd06186 NOX_Duox_like_FAD_NADP 28.2 51 0.0011 30.9 2.9 34 48-81 92-128 (210)
78 PRK05868 hypothetical protein; 28.2 55 0.0012 34.0 3.4 30 60-89 2-31 (372)
79 TIGR02360 pbenz_hydroxyl 4-hyd 27.9 58 0.0013 34.0 3.5 33 59-91 2-34 (390)
80 cd06195 FNR1 Ferredoxin-NADP+ 27.6 76 0.0017 30.5 4.0 23 59-81 101-123 (241)
81 PRK06222 ferredoxin-NADP(+) re 27.4 1.2E+02 0.0026 30.4 5.5 32 59-90 98-132 (281)
82 PRK08051 fre FMN reductase; Va 27.4 50 0.0011 31.8 2.7 23 59-81 102-124 (232)
83 TIGR03219 salicylate_mono sali 27.3 58 0.0013 34.1 3.4 30 60-89 1-31 (414)
84 PRK06912 acoL dihydrolipoamide 27.3 56 0.0012 34.9 3.3 36 60-96 1-36 (458)
85 PLN02172 flavin-containing mon 27.1 84 0.0018 34.1 4.6 32 55-86 6-37 (461)
86 TIGR01316 gltA glutamate synth 27.1 68 0.0015 34.4 3.9 34 55-88 129-162 (449)
87 PRK09982 universal stress prot 27.1 68 0.0015 28.3 3.3 43 308-355 93-138 (142)
88 TIGR01292 TRX_reduct thioredox 26.7 60 0.0013 31.6 3.2 28 61-88 2-29 (300)
89 PRK10637 cysG siroheme synthas 26.6 59 0.0013 35.2 3.3 69 57-125 10-82 (457)
90 TIGR03329 Phn_aa_oxid putative 26.4 60 0.0013 34.7 3.4 39 60-99 25-66 (460)
91 COG0665 DadA Glycine/D-amino a 26.3 79 0.0017 32.2 4.1 42 58-99 3-44 (387)
92 PRK00054 dihydroorotate dehydr 26.3 1E+02 0.0023 30.0 4.8 35 58-92 101-138 (250)
93 PF13738 Pyr_redox_3: Pyridine 25.9 66 0.0014 29.5 3.2 33 57-89 165-197 (203)
94 PF00891 Methyltransf_2: O-met 25.7 77 0.0017 30.6 3.7 33 58-94 100-132 (241)
95 PLN02927 antheraxanthin epoxid 25.3 92 0.002 35.7 4.7 33 57-89 79-111 (668)
96 cd06217 FNR_iron_sulfur_bindin 25.3 1E+02 0.0022 29.3 4.4 35 59-93 107-146 (235)
97 PRK06475 salicylate hydroxylas 25.1 71 0.0015 33.3 3.5 30 60-89 3-32 (400)
98 PRK06370 mercuric reductase; V 25.0 65 0.0014 34.4 3.3 28 61-88 7-34 (463)
99 cd06218 DHOD_e_trans FAD/NAD b 24.9 1E+02 0.0022 30.0 4.5 35 58-92 97-134 (246)
100 TIGR01501 MthylAspMutase methy 24.9 1E+02 0.0023 27.9 4.1 42 305-348 39-80 (134)
101 cd06210 MMO_FAD_NAD_binding Me 24.9 98 0.0021 29.5 4.2 34 59-92 108-146 (236)
102 cd06189 flavin_oxioreductase N 24.9 61 0.0013 30.8 2.8 34 59-92 98-136 (224)
103 KOG0534 NADH-cytochrome b-5 re 24.3 1E+02 0.0022 31.7 4.3 24 58-81 155-178 (286)
104 PRK07634 pyrroline-5-carboxyla 24.1 1.2E+02 0.0027 29.1 4.8 56 59-114 4-61 (245)
105 PRK05920 aromatic acid decarbo 24.0 83 0.0018 30.6 3.5 33 58-90 2-38 (204)
106 PRK00711 D-amino acid dehydrog 24.0 73 0.0016 33.0 3.4 31 60-90 1-31 (416)
107 KOG3851 Sulfide:quinone oxidor 23.9 87 0.0019 33.1 3.7 38 57-94 37-75 (446)
108 PRK00005 fmt methionyl-tRNA fo 23.8 1.6E+02 0.0034 30.2 5.7 36 60-95 1-36 (309)
109 PRK13289 bifunctional nitric o 23.8 1E+02 0.0022 32.2 4.4 23 59-81 261-283 (399)
110 PLN02985 squalene monooxygenas 23.6 65 0.0014 35.4 3.0 33 57-89 41-73 (514)
111 TIGR03169 Nterm_to_SelD pyridi 23.5 59 0.0013 33.2 2.5 21 61-81 1-21 (364)
112 cd06214 PA_degradation_oxidore 23.5 66 0.0014 30.8 2.7 23 59-81 108-130 (241)
113 PRK08305 spoVFB dipicolinate s 23.5 80 0.0017 30.6 3.2 33 59-91 5-42 (196)
114 cd06198 FNR_like_3 NAD(P) bind 23.4 1E+02 0.0022 29.1 3.9 35 59-93 95-134 (216)
115 TIGR02651 RNase_Z ribonuclease 23.2 3.6E+02 0.0078 26.7 8.1 65 285-359 200-269 (299)
116 PF08843 DUF1814: Nucleotidyl 23.2 39 0.00084 31.8 1.1 33 62-94 14-46 (233)
117 PRK10116 universal stress prot 23.1 1.3E+02 0.0028 25.9 4.4 45 307-355 91-138 (142)
118 cd06194 FNR_N-term_Iron_sulfur 23.1 69 0.0015 30.3 2.8 23 59-81 97-119 (222)
119 cd06185 PDR_like Phthalate dio 22.9 1.2E+02 0.0026 28.3 4.3 35 59-93 98-135 (211)
120 cd06212 monooxygenase_like The 22.8 69 0.0015 30.6 2.7 23 59-81 103-125 (232)
121 cd06220 DHOD_e_trans_like2 FAD 22.6 1.3E+02 0.0029 28.9 4.7 33 59-91 88-122 (233)
122 PRK12814 putative NADPH-depend 22.5 1.1E+02 0.0024 34.6 4.7 34 55-88 189-222 (652)
123 PRK09126 hypothetical protein; 22.3 81 0.0017 32.4 3.3 30 59-88 3-32 (392)
124 PRK08849 2-octaprenyl-3-methyl 22.3 76 0.0017 32.8 3.1 30 60-89 4-33 (384)
125 PF13460 NAD_binding_10: NADH( 22.1 1.2E+02 0.0025 27.4 4.0 48 308-358 52-100 (183)
126 PF03807 F420_oxidored: NADP o 22.1 88 0.0019 25.4 2.9 49 61-111 1-52 (96)
127 PF14737 DUF4470: Domain of un 22.1 46 0.001 28.2 1.2 17 108-124 30-46 (100)
128 PRK09853 putative selenate red 22.1 82 0.0018 37.8 3.6 33 56-88 536-568 (1019)
129 PRK07045 putative monooxygenas 22.0 1.3E+02 0.0029 30.9 4.9 29 60-88 6-34 (388)
130 PRK12778 putative bifunctional 22.0 87 0.0019 36.0 3.7 33 56-88 428-460 (752)
131 PRK10342 glycerate kinase I; P 21.9 1.2E+02 0.0026 32.4 4.4 46 312-357 280-325 (381)
132 cd06190 T4MO_e_transfer_like T 21.8 75 0.0016 30.3 2.7 23 59-81 97-119 (232)
133 TIGR01133 murG undecaprenyldip 21.8 97 0.0021 30.9 3.6 29 60-88 1-34 (348)
134 PF02601 Exonuc_VII_L: Exonucl 21.7 3.1E+02 0.0066 27.9 7.3 66 305-375 55-129 (319)
135 TIGR03025 EPS_sugtrans exopoly 21.7 1.1E+02 0.0025 32.5 4.3 53 58-115 124-179 (445)
136 PF13380 CoA_binding_2: CoA bi 21.6 1.1E+02 0.0024 26.6 3.5 34 284-328 79-112 (116)
137 PF03575 Peptidase_S51: Peptid 21.5 73 0.0016 28.9 2.4 40 307-347 26-65 (154)
138 PRK08243 4-hydroxybenzoate 3-m 21.5 92 0.002 32.3 3.5 30 59-88 2-31 (392)
139 cd06215 FNR_iron_sulfur_bindin 21.3 76 0.0017 30.1 2.6 23 59-81 103-125 (231)
140 PRK06027 purU formyltetrahydro 21.2 2.2E+02 0.0048 29.0 6.1 71 36-109 63-140 (286)
141 TIGR03315 Se_ygfK putative sel 21.1 90 0.002 37.5 3.7 33 56-88 534-566 (1012)
142 cd06197 FNR_like_2 FAD/NAD(P) 21.1 75 0.0016 30.5 2.6 23 59-81 125-147 (220)
143 PRK12769 putative oxidoreducta 21.1 1E+02 0.0023 34.7 4.1 32 56-87 324-355 (654)
144 COG0543 UbiB 2-polyprenylpheno 21.1 93 0.002 30.8 3.3 22 60-81 108-129 (252)
145 cd00650 LDH_MDH_like NAD-depen 21.0 74 0.0016 31.4 2.6 50 310-360 64-121 (263)
146 TIGR01318 gltD_gamma_fam gluta 20.8 1.1E+02 0.0025 32.9 4.1 33 55-87 137-169 (467)
147 cd06200 SiR_like1 Cytochrome p 20.7 92 0.002 30.4 3.1 24 58-81 108-131 (245)
148 PRK05714 2-octaprenyl-3-methyl 20.7 86 0.0019 32.6 3.1 29 60-88 3-31 (405)
149 cd06182 CYPOR_like NADPH cytoc 20.7 98 0.0021 30.8 3.4 23 59-81 115-137 (267)
150 cd06196 FNR_like_1 Ferredoxin 20.6 67 0.0014 30.3 2.1 22 60-81 100-121 (218)
151 PRK07609 CDP-6-deoxy-delta-3,4 20.1 85 0.0019 32.1 2.9 24 58-81 203-226 (339)
152 PRK06617 2-octaprenyl-6-methox 20.1 89 0.0019 32.3 3.0 28 61-88 3-30 (374)
153 TIGR02032 GG-red-SF geranylger 20.1 91 0.002 30.1 3.0 28 61-88 2-29 (295)
No 1
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=100.00 E-value=5.5e-85 Score=656.39 Aligned_cols=307 Identities=28% Similarity=0.417 Sum_probs=280.9
Q ss_pred EEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 012211 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~~Rf~~ 141 (468)
||+||||||++++++|||+++.++||||||+|||||||+||+++|++||||+||||.|||+.+. .|.+||+|||+.
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGGSSg~lr~~~g~~~~GDiRn~L~aLa~~~~----~~~~lf~yRf~~ 76 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADDGGSSGRLREELDVPPPGDLRNCLAALSDDPS----LLSKLFQYRFGG 76 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcCCcchHHHHHhcCCCCCcHHHHHHHHhCcCCh----HHHHHHhccCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999874 699999999963
Q ss_pred CchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHHHHHH
Q 012211 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (468)
Q Consensus 142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI~~~s 221 (468)
++||+|||+|||||+|++.++|+|.+||+.++
T Consensus 77 ------------------------------------------------~~dl~gh~~GNl~Laal~~~~g~~~~Ai~~~~ 108 (310)
T TIGR01826 77 ------------------------------------------------GGELSGHSLGNLMLAALSEISGSFLEAINLLS 108 (310)
T ss_pred ------------------------------------------------CCcccCCcHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 35799999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCCCccc
Q 012211 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (468)
Q Consensus 222 ~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~~ 301 (468)
++++|+ |+|+|| |+++++|+|+++||++++||++|+.. ..+|++|||.+.
T Consensus 109 ~~l~v~--g~VlP~--t~~~v~L~a~~~dG~~v~Ge~~i~~~------------------~~~I~~v~l~~~-------- 158 (310)
T TIGR01826 109 KILKVK--GRVLPM--SEHPVTLVAEFEDGREVRGESNIPKM------------------GGKIDRVRLEPE-------- 158 (310)
T ss_pred HHhCCC--CEEECC--CCCceEEEEEECCCCEEEEEEhhhcC------------------CCCceEEEEeCC--------
Confidence 999998 899999 89999999999999999999999752 567999999874
Q ss_pred cCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHhc
Q 012211 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAITDALN 380 (468)
Q Consensus 302 ~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~lg 380 (468)
.|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++|||++|.+|+|
T Consensus 159 -~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g 237 (310)
T TIGR01826 159 -DVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGFSLEDHVDALHRHLG 237 (310)
T ss_pred -CCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred ccCCCCCC-CCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHHH
Q 012211 381 RAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLL 452 (468)
Q Consensus 381 ~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l~ 452 (468)
....|.++ +....+.+++++|......++..|.+.++++|++ |+..+.+...+...||||++||++|++++
T Consensus 238 ~~~~D~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~~~~~g~~-vi~~~l~~~~~~~~rHD~~~La~~l~~l~ 309 (310)
T TIGR01826 238 KPFIDTVLVNTEKVPLEVLRNYFEEGSEQVEHDAEGLQKLGIE-VIFEDLLRAENGTIRHDPQKLADALERIL 309 (310)
T ss_pred CCCCCEEEECCCCCChHHHHHHHhccCCcccccHHHHHhCCCE-EEeccccccCCCCcccCHHHHHHHHHHHh
Confidence 87667665 4456788888887666666788899999999999 55676554444468999999999999876
No 2
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=100.00 E-value=1.7e-81 Score=632.26 Aligned_cols=307 Identities=27% Similarity=0.407 Sum_probs=281.5
Q ss_pred EEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 012211 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~~Rf~~ 141 (468)
||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||+|||+.++ .+.++|+|||..
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGgssg~LR~~~g~~~~GDir~~L~aLa~~~~----~~~~l~~~Rf~~ 76 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEITAIVTVADDGGSSGELRNXQDIPPPGDLRNVLVALSDQED----RLEQLFQYRKEE 76 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCcCCccchhHHhccCCCCCccHHHHHHHhCCCCh----HHHHHhcccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999875 589999999863
Q ss_pred CchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHHHHHH
Q 012211 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (468)
Q Consensus 142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI~~~s 221 (468)
| .+++.||++|||+|++++...++|.+||+.+|
T Consensus 77 --------------~---------------------------------~~~l~gh~~GNL~l~~l~~~~~~~~~ai~~~~ 109 (309)
T cd07044 77 --------------G---------------------------------INEGLGHSLGNLAIAGXTSITGDFTDAIVELS 109 (309)
T ss_pred --------------C---------------------------------CCCccCCcHHHHHHHHHHHhccCHHHHHHHHH
Confidence 1 35789999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCCCccc
Q 012211 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (468)
Q Consensus 222 ~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~~ 301 (468)
++|+|+ |+|+|| |+++++|+|+++||+.+.||++|++. .++|++|||.+.+
T Consensus 110 ~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~gq~~i~~~------------------~~~I~~v~l~~~~------- 160 (309)
T cd07044 110 KVFNIK--GNILPS--SDDPVSLHAEXEDGTIVHGESFIPKG------------------EKKIDRVFLTPVD------- 160 (309)
T ss_pred HHhCCC--CEEEcC--cCCceEEEEEECCCceEeeeeeeecC------------------CCCceEEEEcCCC-------
Confidence 999998 899999 89999999999999999999999742 6799999998753
Q ss_pred cCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHhc
Q 012211 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAITDALN 380 (468)
Q Consensus 302 ~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~lg 380 (468)
.|+|+|++++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|++||+|||++||++++.+|+|
T Consensus 161 -~~~~~~~~l~AI~~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni~t~pget~~~s~~~~v~~~~~~~~ 239 (309)
T cd07044 161 -EASPSREVLEAIEKADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNIXTQPGETDEYTSSDHAEALQRHLG 239 (309)
T ss_pred -CCCCCHHHHHHHHhCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCCCCCCcccCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred ccCCCCCC-CCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHH
Q 012211 381 RAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIAD 450 (468)
Q Consensus 381 ~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~ 450 (468)
..+.|.++ +....+.+++++|..+...++..|.++++++|++ |+..++++..+.+.+|||++||++|++
T Consensus 240 ~~~lD~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~l~~~g~~-vi~~d~~~~~~~~~rhd~~~LA~~l~~ 309 (309)
T cd07044 240 RPFIDVVLVDEEDRSDEVXNSYRFDELVPVEVDFFALKRLGCR-VISADFLXEENGGSRHNSKELSEIIVE 309 (309)
T ss_pred CCcceEEEECCCCCchHHHHHHHhcCCceeccCHHHHHhCCCE-EEecCcEEcCCCCcccCHHHHHHHHhC
Confidence 87666654 4456788889988766666788999999999999 567888877667789999999999864
No 3
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=100.00 E-value=2.5e-81 Score=631.26 Aligned_cols=305 Identities=36% Similarity=0.537 Sum_probs=272.9
Q ss_pred EEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHh-cCcCC
Q 012211 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLL-GHRLP 140 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf-~~Rf~ 140 (468)
||+||||||++++++|||+++.++||||||+|||||||+||++||++|||||||||+|||+.++ .+..+| +|||.
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~DdGGSSG~Lr~~~g~~~~GDiR~~L~aLa~~~~----~~~~~~~~~~~~ 76 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALADDES----LAQKLFFLYRRF 76 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCCCCccchhHHHHcCCCCCCcHHHHHHHhcCCCc----hhHHHHHHhccc
Confidence 6999999999999999999999999999999999999999999999999999999999999976 345555 77775
Q ss_pred CCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHHHHH
Q 012211 141 LHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLF 220 (468)
Q Consensus 141 ~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI~~~ 220 (468)
. +++|++||+|||||+|+++++|+|.+||+.+
T Consensus 77 ~------------------------------------------------~~~l~gh~~GNl~L~a~~~~~g~~~~ai~~~ 108 (308)
T cd07187 77 G------------------------------------------------DFDLRGHSLGNLILAALTLITGSFAEAILLL 108 (308)
T ss_pred C------------------------------------------------CCccccCcHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 5789999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCCCcc
Q 012211 221 SRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLH 300 (468)
Q Consensus 221 s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~ 300 (468)
+++++|+ |+|+|| |+++++|+|+++||++++||++|++.. ..++|++|||.+.
T Consensus 109 ~~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~Ge~~i~~~~----------------~~~~I~~v~l~~~------- 161 (308)
T cd07187 109 SRLLGVR--GRVLPV--TNDPLHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPP------- 161 (308)
T ss_pred HHHhCCC--cEEEcc--cCCceEEEEEECCCCEEEEEEEeecCC----------------CCCCceEEEEECC-------
Confidence 9999998 899999 899999999999999999999998741 2579999999875
Q ss_pred ccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHh
Q 012211 301 EVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAITDAL 379 (468)
Q Consensus 301 ~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~l 379 (468)
.|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||++|+++|||++|.+|+
T Consensus 162 --~~~~~~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~~~~~get~~~~~~d~v~~i~~~~ 239 (308)
T cd07187 162 --DPKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMTQPGETDGFTLSDHVRALLRHL 239 (308)
T ss_pred --CCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cccCCCCCC-CCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHH
Q 012211 380 NRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIAD 450 (468)
Q Consensus 380 g~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~ 450 (468)
+....|.++ +....+.+++.+| .....++..|.+.++++|+++ +..+... .+...||||++||++|++
T Consensus 240 ~~~~~d~vlv~~~~~~~~~~~~y-~~~~~~v~~d~~~~~~~g~~~-i~~~~~~-~~~~~rHD~~kLa~~l~~ 308 (308)
T cd07187 240 GEGLLDVVLVNSERPPEEVLRRY-EEGSLPVELDEELLEKLGIRV-IEADLLS-EESGIRHDPEKLAAALLE 308 (308)
T ss_pred CCCCCCEEEECCCCCchHHhhhh-hhcCCCcccCHHHHHhCCCEE-EEecccc-CCCCceECHHHHHHHHhC
Confidence 966666554 4445667777776 344446788999999999995 4566443 556789999999999863
No 4
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=100.00 E-value=4.2e-72 Score=563.35 Aligned_cols=283 Identities=32% Similarity=0.457 Sum_probs=229.4
Q ss_pred EEEEeCCccchHHHHHHHcC-CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHh-cCCCChhHHHHHHHhcCcC
Q 012211 62 LLVFSGGTAFNGVVEELKNI-TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRL-SDESTPEALAVRRLLGHRL 139 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~-~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aL-a~~~~~~~~~l~~Lf~~Rf 139 (468)
||+||||||++++++|||++ +.++|+||||+|||||||+||++||+++|||||||||+| ++.+. .|.+||+|||
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~~~~~lt~IV~~~DdggssG~LR~~~~~~~pGDir~~l~aL~a~~~~----~~~~l~~~rf 76 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRVPPHDLTAIVNTADDGGSSGRLRRELGIIPPGDIRNCLYALIADEEE----TWWGLFGYRF 76 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS-SEEEEEEE--CT-SHHHHHHHHHCTSE-HHHHHHHHHHH-STTTC----HHHHHCT-B-
T ss_pred CEEEeCcccHHHHHHHHHHhCCCCeEEEEECccCCccchhhHhhcCCCCcchHHHHHHHhcCCCch----HHHHhhCCEe
Confidence 79999999999999999999 999999999999999999999999999999999999999 77644 5889999999
Q ss_pred CCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHHHH
Q 012211 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFL 219 (468)
Q Consensus 140 ~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI~~ 219 (468)
+. .++|+|++||+||||+++++++.|+|.+||+.
T Consensus 77 ~~----------------------------------------------~~~~~l~~hslGNl~l~~~~~~~~~~~~ai~~ 110 (300)
T PF01933_consen 77 SG----------------------------------------------DGDFDLAGHSLGNLFLTALLEIGGSLSEAIDE 110 (300)
T ss_dssp CH----------------------------------------------CCSCSGTT-BHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cc----------------------------------------------cCCccHhhCchhHHHHHHHHHHCCCHHHHHHH
Confidence 81 02588999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCccCCCceEEEEEEcCC----cEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCC
Q 012211 220 FSRVSDIPSESQVLPVISTNDRLTLGCELGDG----TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEG 295 (468)
Q Consensus 220 ~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG----~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~ 295 (468)
+|++++|+ ++|+|| |+++++|+|+++|| ++++||++|+++ ..++|++|+|.+.
T Consensus 111 ~~~~l~i~--~~VlP~--t~~~v~l~a~~~dG~~~~~~v~ge~~I~~~-----------------~~~~I~~v~~~~~-- 167 (300)
T PF01933_consen 111 FSRLLGIR--GRVLPM--TDDPVHLVAELEDGLEFQEIVRGESWISHR-----------------CKPPIRRVFLEGA-- 167 (300)
T ss_dssp HHHHTT-S--SEEEES--BSS-EEEEEEETTSEEHH-EEESCCCCCST-----------------S-S-EEEEEEECT--
T ss_pred HHHHhCCC--CcEecC--cCCceEEEEEEcCCCcceeEEcceEeeccc-----------------CCCcccEEEEecC--
Confidence 99999998 799999 89999999999999 999999999873 3679999999853
Q ss_pred CCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHH
Q 012211 296 SNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTA 374 (468)
Q Consensus 296 ~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~a 374 (468)
|..|+|+|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +| |||+||++++|+++
T Consensus 168 -----~~~~~~~p~~l~AI~~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni~~~-Get~~~~~~~~v~~ 241 (300)
T PF01933_consen 168 -----PEEAKANPEALEAIEEADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNIMTD-GETDGLMAADHVEA 241 (300)
T ss_dssp -----STT--B-HHHHHHHHH-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SSB---TTSTTHBHHHHHHH
T ss_pred -----ccccCCCHHHHHHHHhCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCCCCC-CccCCCcHHHhHHH
Confidence 125899999999999999999999999999999999999999999999999999999 67 99999999999999
Q ss_pred HHHHhcccCCCCCCCC--CCCccccceeeEecCCCCCcCCHHHHHhCCCeE
Q 012211 375 ITDALNRAYGDPQKSL--KNSPSQYINTILVPEDGEIPLDIQCLASQGIFD 423 (468)
Q Consensus 375 l~~~lg~~~~~~~~~~--~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~ 423 (468)
+.+++++.+.|.+..+ ..+..+.+++|......++.+|....++++++.
T Consensus 242 ~~~~~~~~~~d~v~~~~~~~~d~~~~~~~~~~~~~~v~~d~~~~~~~~~~~ 292 (300)
T PF01933_consen 242 IARGVGEHYIDYVDVNVIDEPDEDVLDRYEAEGSEPVTVDTEMDEKLGIEA 292 (300)
T ss_dssp HHHHHSSCCTSEEEEEESESTHHHHHHHHHHTTSEBEBE-HHHHHHTTCEE
T ss_pred HHHhhhhhcCCEEEeCCccCCCHHHHHHHHHcCCCcccCChHHhhHhhHHH
Confidence 9999998876654322 223445556655444445667777788888874
No 5
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-70 Score=547.85 Aligned_cols=312 Identities=25% Similarity=0.375 Sum_probs=267.7
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCC-CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhc-CCCChhHHHHHHH
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS-DESTPEALAVRRL 134 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~-~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa-~~~~~~~~~l~~L 134 (468)
.++||||+||||||++++|+|||++. .++|+||||+|||||||+||.++|+++|||+|||+.+|+ +.+. + ..+.+|
T Consensus 5 ~~~~kvvvlgGGtGl~~lL~gLk~~~~~~iTaIVtvaDdggssG~lr~~~~~~~~GD~rn~l~al~~~~e~-~-~~~e~L 82 (323)
T COG0391 5 AKKPKVVVLGGGTGLPKLLSGLKRLLPSEITAIVTVADDGGSSGRLRLDTGLYPPGDLRNCLAALGIDEET-F-RTHERL 82 (323)
T ss_pred ccCceEEEEcCCCCHHHHHHHHHhhcCceEEEEEEecccCCcCceeeeecCCCCChhHHHHHHHhccCCcc-h-hHHHHH
Confidence 57899999999999999999999998 799999999999999999999999999999999999999 5544 2 348999
Q ss_pred hcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHH
Q 012211 135 LGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLD 214 (468)
Q Consensus 135 f~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~ 214 (468)
|+|||.. +.+.|+||++||++|+|+.++.++|.
T Consensus 83 ~qyrf~~-----------------------------------------------~~g~L~gh~lgnl~l~a~~~~~~~~~ 115 (323)
T COG0391 83 FQYRFGE-----------------------------------------------GNGELGGHDLGNLMLAALSLISGSLS 115 (323)
T ss_pred HhcccCC-----------------------------------------------CCCcccCccchhHHHHHHHhhcCCHH
Confidence 9999973 13569999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCC-cEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecC
Q 012211 215 AAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDG-TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSS 293 (468)
Q Consensus 215 ~AI~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG-~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~ 293 (468)
+|++.++++|+++ ++|+|| |+++++|.|+++|| ..|+||+||.... ..+|++|+|.++
T Consensus 116 ~Ai~~~~~~l~v~--~~vlP~--sdd~v~l~a~~~dG~~~v~gE~~i~~~~-----------------~~~v~~V~~~~~ 174 (323)
T COG0391 116 EAIDALSKLLGVK--GRVLPM--SDDPVDLVAETEDGRRIVFGESWIAELG-----------------GPPVHRVRLEGP 174 (323)
T ss_pred HHHHHHHHHhCCC--ceEeec--CCCceeEEEEcCCCcEEEeeeechhhcC-----------------CCcceEEEEecC
Confidence 9999999999998 899999 89999999999999 6999999998631 234999999954
Q ss_pred CCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCC-CCCCCCHHHH
Q 012211 294 EGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDR-ETSGFSASCF 371 (468)
Q Consensus 294 ~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~g-ET~g~s~~d~ 371 (468)
+ +|+|+|+|++||++||+||||||||||||+|||++|||++||+++.||+|||||+ +|+| ||++|+++||
T Consensus 175 ~--------~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g~~t~~~~~~d~ 246 (323)
T COG0391 175 E--------KPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCNLMTQAGKETDGLSVEDH 246 (323)
T ss_pred C--------CCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEeccCCCCCCcccccccHHHH
Confidence 3 6999999999999999999999999999999999999999999999999999999 8999 9999999999
Q ss_pred HHHHHHHhcccCCCCCC-CCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHH
Q 012211 372 VTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIA 449 (468)
Q Consensus 372 v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~ 449 (468)
++++++|+|..+.|.++ +......+...+|++....++..|...+++.+..+.+ ...+...+ .+||++++++.++
T Consensus 247 i~~i~~~~g~~~iD~vivd~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~~-~~~~~~~~--~~h~~~~~~~~~~ 322 (323)
T COG0391 247 IAALAQHYGAFVIDAVIVDNDDVEDEDLIRYVEEKGLEVEIDPTLLDREGLRRAL-ARNLLKLE--VRHDPKKLAEVLL 322 (323)
T ss_pred HHHHHHHhCcccCcEEEECCCCccHHHHHHHhhhcCceeEechhhhhchhhHHHH-HHHhhhhh--hhhhHHHHHHHhh
Confidence 99999999988656544 3333443433355544445566677777777764332 22233322 6999999999875
No 6
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=100.00 E-value=1.1e-63 Score=499.01 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=247.9
Q ss_pred EEEEeCCccchHHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------HH
Q 012211 62 LLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------LA 130 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~~--~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~---~~~------~~ 130 (468)
||+||||||++++|+|||++. .++|+||||+|||||||. +.|+|||||||+||+..+ +|+ ..
T Consensus 1 Iv~lgGGtG~~~lL~GL~~~~~~~~lTaIVnvaDDgg~sG~-------~v~PDidtvlyaLa~~~~~~~~wG~~gdt~~~ 73 (303)
T cd07186 1 IVVLSGGTGGAKLLRGLKRVLDPEELTVVVNTGDDFWLSGL-------YVSPDLDTVLYTLAGLIDRETGWGIEGDTFNT 73 (303)
T ss_pred CEEEeCCccHHHHHHHHHhCCCCCceEEEEECCcCCcccCC-------eeCCcHHHHHHHhcCCCccccccCccCchHHH
Confidence 699999999999999999998 699999999999999994 467799999999998864 343 36
Q ss_pred HHHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhc
Q 012211 131 VRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFF 210 (468)
Q Consensus 131 l~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~ 210 (468)
+.+||+|||+ +|+.+ +|.|+++|++||++|++++
T Consensus 74 ~~~l~~~g~~--------~~~~~-----------------------------------gd~dla~H~~rnl~L~ag~--- 107 (303)
T cd07186 74 LEALERLGGE--------EWFRL-----------------------------------GDRDRATHILRTEMLREGK--- 107 (303)
T ss_pred HHHHHHhCCc--------ccccC-----------------------------------CCccccccHHHHHHHHccC---
Confidence 7777788775 34333 3678999999999998864
Q ss_pred CCHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEE
Q 012211 211 QSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFY 290 (468)
Q Consensus 211 gsl~~AI~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l 290 (468)
+|.+|++.+|++|+|+ ++|+|| |+++++|+|+++||++++||+||.+. .+.+|++|+|
T Consensus 108 -~l~~a~~~l~~~L~v~--grVlPm--Sd~~v~l~a~~~dG~~~f~E~~V~~~-----------------~~~~i~~V~~ 165 (303)
T cd07186 108 -SLSEVTAELAERLGIK--ARILPM--SDDRVETRVVTDEGDLHFQEYWVRRR-----------------GEPEVRDVRF 165 (303)
T ss_pred -CHHHHHHHHHHHHCCC--CEEECC--cCCceEEEEEECCCCEEEEEEEEccc-----------------CCCCeEEEEe
Confidence 8999999999999998 899999 89999999999999999999999853 2579999999
Q ss_pred ecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHH
Q 012211 291 MSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSAS 369 (468)
Q Consensus 291 ~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~ 369 (468)
.+++ .|+|+|+|++||++||+||||||||||||+|||+||||++||++++|+||||||+ +.. .++
T Consensus 166 ~~~e--------~a~~~p~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~------~v~ 231 (303)
T cd07186 166 VGAE--------EARPAPEVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSPIIGGK------AVS 231 (303)
T ss_pred CCcc--------cCCCCHHHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcCCCCCC------CCC
Confidence 8754 5899999999999999999999999999999999999999999999999999999 422 122
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHH
Q 012211 370 CFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIA 449 (468)
Q Consensus 370 d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~ 449 (468)
....++|+++|.+.+ +.+++..|.+++|.+++|..+. .+..+++..|++ |..++++|+. ..|..+||++++
T Consensus 232 Gpa~~~m~a~G~~~s--~~gva~~Y~~~~d~~vid~~D~--~~~~~~~~~g~~-v~~~~t~m~~----~~~~~~la~~~l 302 (303)
T cd07186 232 GPAAKLMAALGFEPS--AAGVAEIYGDLLDGFVIDEADR--ALADAIEALGIE-VSRTDTLMTD----EEDKIRLAREVL 302 (303)
T ss_pred chHHHHHHHcCCCCc--HHHHHHHhhccccEEEEccccc--ccchhcccCCce-eEecCccCCC----HHHHHHHHHHHh
Confidence 334777999897654 5667778999999999998753 234567888998 5689999973 789999999876
No 7
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=100.00 E-value=5.4e-63 Score=491.86 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=242.7
Q ss_pred EEEeCCccchHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------HHH
Q 012211 63 LVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------LAV 131 (468)
Q Consensus 63 Vv~gGGTGl~~llrgLk~~--~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~---~~~------~~l 131 (468)
++||||||++++|+|||++ +.++|+||||+|||||||++ .|+|||||||+||+.++ +|+ ..+
T Consensus 1 ~~l~GGtG~~~lL~GLk~~~~~~~iTaIVnt~DD~~~sG~~-------v~PDidtvlyaLa~~~d~~~~wG~~~dt~~~~ 73 (297)
T TIGR01819 1 TVLSGGTGTPKLLQGLKEVLPDAELTVVVNTGEDVWVSGLL-------VCPDLDTVLYTLGGGIDRERWWGIADDTFHTH 73 (297)
T ss_pred CEEECCcCHHHHHHHHHhcCCCCceEEEEEcCcCCCCcCCE-------eCchHHHHHHHhCCCcccccccccccchHHHH
Confidence 5899999999999999999 78999999999999999975 66699999999998753 233 368
Q ss_pred HHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcC
Q 012211 132 RRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQ 211 (468)
Q Consensus 132 ~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~g 211 (468)
.+||+|||+ +|+.+ +|.|+++|++||++|++++
T Consensus 74 ~~L~~~~~~--------~~~~l-----------------------------------Gd~dla~H~~r~~~L~ag~---- 106 (297)
T TIGR01819 74 ERLKELGVP--------EGLRL-----------------------------------GDRDRATHIVRTQMLRAGH---- 106 (297)
T ss_pred HHHHHhCCc--------ccccC-----------------------------------CcccccccHHHHHHHHccC----
Confidence 888999885 35444 2578999999999999864
Q ss_pred CHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEe
Q 012211 212 SLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYM 291 (468)
Q Consensus 212 sl~~AI~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~ 291 (468)
+|++|++.+|++|+|+ ++|+|| |+++++|+|+++||++++||+||.+.. +.+|++|+|.
T Consensus 107 ~l~~a~~~l~~~L~v~--g~VlPm--Sdd~V~l~a~~~dG~~~fqE~~V~~~~-----------------~~~i~~V~~~ 165 (297)
T TIGR01819 107 SLSEVTEALCDAFGIK--ARLLPM--TDDEVSTYVETDEGAMHFQEFWVRRRG-----------------EPPVEDVDFR 165 (297)
T ss_pred CHHHHHHHHHHHHCCC--CEEECC--CCCceEEEEEECCCCeEcceEeeeecC-----------------CCCeeEEEEC
Confidence 9999999999999998 899999 899999999999999999999997641 5799999997
Q ss_pred cCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHH
Q 012211 292 SSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASC 370 (468)
Q Consensus 292 ~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d 370 (468)
.++ .++|+|+|++||++||+||||||||||||+|||+||||++||++ |+||||||+ +... ++.
T Consensus 166 g~e--------~a~a~peal~AI~~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~--a~vV~Vspiig~~~------v~G 229 (297)
T TIGR01819 166 GAE--------KASIAPKVLEAIRKEDNILIGPSNPITSIGPILSLPGIREALRD--KKVVAVSPIVGNAP------VSG 229 (297)
T ss_pred CCC--------CCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHc--CCEEEEccCcCCCc------CCC
Confidence 543 58999999999999999999999999999999999999999998 999999999 4331 122
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHH
Q 012211 371 FVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIA 449 (468)
Q Consensus 371 ~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~ 449 (468)
...++++++|.+.+ +.+++..|.+++|.+++|+. |...+.+.|++ |..++++|+ ...|..+||++++
T Consensus 230 pA~~~m~a~g~e~s--~~gva~~Y~~~~d~~vid~~-----D~~~~~~~g~~-v~~~~t~m~----~~~~~~~la~~~l 296 (297)
T TIGR01819 230 PAGKLMAAVGVEVS--AAGVAEHYGDFLDVFVVDEV-----DKADEDRFGCH-VRRTDTLMT----TLEDTARLARAVV 296 (297)
T ss_pred hHHHHHHHcCCCcc--HHHHHHHhhccccEEEEecC-----chhhhccCCce-eEecCcccC----CHHHHHHHHHHHh
Confidence 34667888887653 56677889999999999987 55555566998 568999997 4789999999876
No 8
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=100.00 E-value=2.5e-61 Score=481.63 Aligned_cols=290 Identities=17% Similarity=0.204 Sum_probs=246.0
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCC---CChhH------
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDE---STPEA------ 128 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~---~~~~~------ 128 (468)
+|||+||||||++++|+|||++ +.++|+||||+|||||||. ..|+|||||||+||+. +.+|+
T Consensus 1 ~~iv~lgGGtG~~~lL~GL~~~~~~~~iT~IVnt~DDggssG~-------~v~PDidtvlyaLa~~i~~~~~WG~~gdt~ 73 (303)
T PRK13606 1 MMITVLSGGTGTAKLLRGLKAVLPPEEITVVVNTGDDIWLHGL-------RVCPDLDTVMYTLAGLIDPERGWGIAGDTF 73 (303)
T ss_pred CeEEEEeCccCHHHHHHHHHhccCCCCeEEEEECCcCCCccCC-------EeCCChhhHHHHhhcccCcccccCccCchH
Confidence 5899999999999999999999 7999999999999999995 4667999999999988 44453
Q ss_pred HHHHHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHh
Q 012211 129 LAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARV 208 (468)
Q Consensus 129 ~~l~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~ 208 (468)
..+.+|++|||+ ||..+ +|.|+++|++||++|+++
T Consensus 74 ~~~~~L~~~~~~--------e~~~~-----------------------------------Gd~dla~H~~rnl~L~ag-- 108 (303)
T PRK13606 74 HTHEELARLGGP--------EWFGL-----------------------------------GDRDRATHIVRTQLLRAG-- 108 (303)
T ss_pred HHHHHHHHcCCc--------ccccC-----------------------------------CCccccccHHHHHHHHcc--
Confidence 468888888875 34322 367899999999999876
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEE
Q 012211 209 FFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRV 288 (468)
Q Consensus 209 ~~gsl~~AI~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV 288 (468)
++|.+|++.+|++|+|+ ++|+|| |+++++|+|+++||+++|||+||.+. ...+|++|
T Consensus 109 --~~l~~a~~~l~~~l~v~--~~VlPm--Sd~~v~l~a~~~~~~i~fqE~~V~~~-----------------~~~~v~~v 165 (303)
T PRK13606 109 --YPLSEVTEALCDRLGVG--ARLLPM--SDDPVETHVVTDEGELHFQEYWVRRR-----------------GEPPVLDV 165 (303)
T ss_pred --CCHHHHHHHHHHHhCCC--CEEECC--cCCceEEEEEECCCcEEeeeEEeecc-----------------CCCCeEEE
Confidence 69999999999999998 899999 89999999999999999999999864 26789999
Q ss_pred EEecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCC
Q 012211 289 FYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFS 367 (468)
Q Consensus 289 ~l~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s 367 (468)
+|.+.+ .++|+|+|++||++||+||||||||||||+|||++|||++|| ++|+||||||+ +...
T Consensus 166 ~~~~~~--------~a~a~p~vl~AI~~AD~IiiGPgnp~TSI~P~L~v~gi~eAL--~~a~vV~Vsp~Ig~~~------ 229 (303)
T PRK13606 166 VFVGAE--------KAKPAPGVLEAIEEADAVIIGPSNPVTSIGPILAVPGIREAL--TEAPVVAVSPIIGGAP------ 229 (303)
T ss_pred EEeCcc--------cCCCCHHHHHHHHhCCEEEECCCccHHhhchhccchhHHHHH--hCCCEEEEcCCCCCCc------
Confidence 998754 489999999999999999999999999999999999999999 88999999998 4321
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHH
Q 012211 368 ASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQA 447 (468)
Q Consensus 368 ~~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~a 447 (468)
++....+++.+.|.+.+ ..++...|.+++|.+++|..+. .. +..|++ |+.++++|+ ...|..+||++
T Consensus 230 v~GPA~~lm~a~g~e~s--~~gva~~Y~~~~D~~vid~~D~-----~~-~~~g~~-v~~~~t~m~----~~~~~~~la~~ 296 (303)
T PRK13606 230 VSGPAAKLMAAIGVEVS--AAGVAEHYGDLLDGFVIDEADA-----AI-EVPGVE-VLRTDTLMT----DPEDTARLARA 296 (303)
T ss_pred CCChhHHHHHHcCCcch--HHHHHHhccccceEEEECCCcc-----cc-ccCCce-EEEeccCCC----CHHHHHHHHHH
Confidence 11223566777776543 4456678999999999998742 21 566777 567999987 47899999999
Q ss_pred HHHHHh
Q 012211 448 IADLLG 453 (468)
Q Consensus 448 l~~l~~ 453 (468)
+++++.
T Consensus 297 ~l~~~~ 302 (303)
T PRK13606 297 ILELAG 302 (303)
T ss_pred HHHHhc
Confidence 998864
No 9
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.20 E-value=7.7 Score=35.82 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
-.+.+|+|+|||.=....++.|.+.+.++|+|
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999999999999999999977
No 10
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=58.78 E-value=36 Score=31.33 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=34.1
Q ss_pred HHHHHHhc----CCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNA----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~----ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+ +|.||+=||-+ .||| .++|||+....|+ |=++|+
T Consensus 54 elid~I~~a~~~~dgiIINpga~THtSv-------Ai~DAl~~~~~P~VEVHiSNi 102 (140)
T cd00466 54 ELIDWIHEARDGADGIIINPGAYTHTSI-------ALRDALAAVSIPVIEVHISNI 102 (140)
T ss_pred HHHHHHHHhhccCcEEEEcchHHHHHHH-------HHHHHHHcCCCCEEEEecCCc
Confidence 55566655 58999999999 6998 5899999988776 778898
No 11
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=57.27 E-value=16 Score=33.52 Aligned_cols=42 Identities=31% Similarity=0.337 Sum_probs=30.7
Q ss_pred HHHHHHhcCCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
..-+|..++|.||+=||.+ .||+ .++|||+....|+ |=++|+
T Consensus 59 ~I~~a~~~~dgiIINpga~thtS~-------Ai~DAl~~~~~P~vEVHiSNi 103 (140)
T PF01220_consen 59 WIHEARDDVDGIIINPGAYTHTSI-------AIRDALKAISIPVVEVHISNI 103 (140)
T ss_dssp HHHHHTCTTSEEEEE-GGGGHT-H-------HHHHHHHCCTS-EEEEESS-G
T ss_pred HHHHHHhhCCEEEEccchhccccH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 3344555679999999999 9999 7999999998887 667887
No 12
>PTZ00058 glutathione reductase; Provisional
Probab=56.07 E-value=10 Score=42.28 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
+.-.|+|||||.|.......+.+++.+ ++||-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~-ValIE 78 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK-VALVE 78 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe-EEEEe
Confidence 334699999999999999999998876 44444
No 13
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.56 E-value=19 Score=33.34 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=34.4
Q ss_pred HHHHHHhc----CCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNA----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~----ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+ +|.|||=||-+ .||| .++|||+....|+ |=++|+
T Consensus 56 elId~I~~a~~~~dgiiINpga~THtSi-------Al~DAl~~~~~P~VEVHiSNi 104 (146)
T PRK05395 56 ELIDRIHEARDGADGIIINPGAYTHTSV-------ALRDALAAVSIPVIEVHLSNI 104 (146)
T ss_pred HHHHHHHhcccCCcEEEECchHHHHHHH-------HHHHHHHcCCCCEEEEecCCc
Confidence 55666655 58999999999 7998 5899999988776 778888
No 14
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=53.81 E-value=9.8 Score=32.35 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=30.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS 92 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~ 92 (468)
-++.+|+|+|||--...=++.|.+.+.++|+|-+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 357899999999999999999999999998876664
No 15
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=52.67 E-value=21 Score=33.11 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHHHHHh----cCCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLN----AVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~----~ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|. ++|.||+=||-+ +||| -++|||+....|+ |=++|+
T Consensus 56 elId~i~~a~~~~dgiIINpga~THtSi-------Al~DAl~~~~~P~VEVHiSNi 104 (146)
T PRK13015 56 ELIDWIHEARGDVAGIVINPGAYTHTSV-------AIRDALAALELPVIEVHISNV 104 (146)
T ss_pred HHHHHHHHhhhcCCEEEEcchHHhhhHH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 4445444 458999999999 7998 4899999988776 778888
No 16
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=51.35 E-value=13 Score=39.44 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+||||+|||.|.-.+++.|.....++|.|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI 39 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVI 39 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEE
Confidence 4569999999999888888886544566655
No 17
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=51.27 E-value=15 Score=35.39 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
.+.+|+|+|||.-...-++.|.+.+.++|+|=+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 567999999999888888899989888886633
No 18
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.56 E-value=18 Score=34.83 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
-.+.+|+|+|||.=....++.|.+.+.++|+|
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI 39 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVI 39 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 35789999999999999999999998888876
No 19
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.06 E-value=18 Score=28.84 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.6
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd 94 (468)
||||+|||--.-.+...|+++..++|. +...|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl-i~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL-IERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE-EESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE-Eeccch
Confidence 799999999999999999999888855 455555
No 20
>PLN00016 RNA-binding protein; Provisional
Probab=48.80 E-value=16 Score=37.87 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCCCeEEEE---eCCcc--chHHHHHHHcCCCCeEEEEe
Q 012211 57 HTQPSLLVF---SGGTA--FNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 57 ~~~pkIVv~---gGGTG--l~~llrgLk~~~~~lTaIVt 90 (468)
.+.++|+|+ ||||| ...|++.|.+.++++++++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R 88 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTR 88 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEec
Confidence 344567776 58888 78899999988888887765
No 21
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=48.09 E-value=19 Score=35.53 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~D 93 (468)
.++.+|+|+|||.-..+=++.|.+++.++|+|-+...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4678999999999888888899999999999876643
No 22
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=46.58 E-value=30 Score=41.27 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred cccCCCCC--CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC
Q 012211 50 RCFSNPTH--TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 50 ~~~~~~~~--~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd 94 (468)
-|++++-. .+.+|+++|||.|.+-+.+.|++.+.++++|.. .|.
T Consensus 882 GPLG~pF~i~~~k~vLLVgGGVGiApLak~Lk~~G~~V~~~~~-~d~ 927 (1028)
T PRK06567 882 GPTGSPLEIPQNKKIVIVDFEVGNIGLLKVLKENNNEVIFVTY-PDI 927 (1028)
T ss_pred cccCCCCCCCCCCeEEEEEccccHHHHHHHHHHCCCeEEEEEc-CCC
Confidence 35555322 245899999999999999999999999999984 453
No 23
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=46.06 E-value=26 Score=35.97 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=32.9
Q ss_pred hhhhccccCCCCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 45 AATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 45 ~~~~~~~~~~~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
-+-||+ ..++..+.+|||+|||.+.-..+..|++...+++.|
T Consensus 6 ~~~~~~--~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~li 47 (352)
T PRK12770 6 FAFMCK--EKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVY 47 (352)
T ss_pred hhhhcc--cCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 344666 356778889999999998888888888888877754
No 24
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=45.41 E-value=21 Score=38.33 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHc-CCCCCCcHHHHHHHh
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVL-GGPAVGDIRSRCLRL 120 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~--~~lTaIVtv~DdGGSSG~LR~~~-g~~~~GDIRn~L~aL 120 (468)
+.+|||++|||-|.-.+++.|.+.. .++| +|.-.|----+..|-+.. |.+.+++|+--+-.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~it-LVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEIT-LVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEE-EEeCCCccccchhhhhhhcCCCChhheeccHHHH
Confidence 4689999999999999999998775 4444 344444444444444433 445555554433333
No 25
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=45.10 E-value=28 Score=32.63 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=29.2
Q ss_pred CeEEEE--eCCccchHHHHHHHcCCCC--eEEEEeCCCCCc
Q 012211 60 PSLLVF--SGGTAFNGVVEELKNITTR--VAHVLPVSDDGG 96 (468)
Q Consensus 60 pkIVv~--gGGTGl~~llrgLk~~~~~--lTaIVtv~DdGG 96 (468)
+||+|| |+|+-+..++..+++-..+ +..|||-.|+..
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~ 41 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPR 41 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 589999 7777777788899887776 777887777754
No 26
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=42.47 E-value=21 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.7
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+|||+|||.|.-..+..|++...+++.|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 6999999999999999999777777666
No 27
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=42.02 E-value=26 Score=36.29 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG 95 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdG 95 (468)
..+||++|||.+.-.+++.|++...+...+|=.-|++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 3589999999999999999998765544444444554
No 28
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=41.86 E-value=43 Score=30.84 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=34.4
Q ss_pred HHHHHHhcC----CEEEEcCCCch-hhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNAV----DCIIYAMGSLF-TSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~A----DlIvlGPGSly-TSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+| |.||+=||-+- ||| .++|||+....|+ |=++|+
T Consensus 54 elId~i~~a~~~~dgiIINpga~THtSi-------Al~DAl~~~~~P~vEVHiSNi 102 (141)
T TIGR01088 54 QLIDKIHEAEGQYDGIIINPGALTHTSV-------ALRDALAAVSLPVVEVHLSNV 102 (141)
T ss_pred HHHHHHHhccccCCEEEEcChHHhhhHH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 556666554 89999999997 998 5899999888776 778888
No 29
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.81 E-value=40 Score=28.42 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=42.1
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchH-HHHHHcCCCCCCcHHHHHH
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTA-EIVRVLGGPAVGDIRSRCL 118 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG-~LR~~~g~~~~GDIRn~L~ 118 (468)
||.++|.|......+..+.+...+. -|+.+.|...... ...+.+|.+...|++..+-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~ 59 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA 59 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH
Confidence 7999999999999999999885544 4445555554444 3578899999999886443
No 30
>PTZ00494 tuzin-like protein; Provisional
Probab=40.71 E-value=61 Score=35.83 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=42.4
Q ss_pred chhhhhhhhccccCCCCCCCCeEEEEeCCccchH--HHH-HHHcCC-CCeEEEEeCCCCCcchHHHHHHcCC---CCCCc
Q 012211 40 TKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNG--VVE-ELKNIT-TRVAHVLPVSDDGGSTAEIVRVLGG---PAVGD 112 (468)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~pkIVv~gGGTGl~~--llr-gLk~~~-~~lTaIVtv~DdGGSSG~LR~~~g~---~~~GD 112 (468)
++.-++...-..++......|||+||.|..|+.+ ++| ++++-. .-+-+=|-..+|-=.| +-+.+|+ -+|||
T Consensus 375 ~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrs--VVKALgV~nve~CGD 452 (664)
T PTZ00494 375 RREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRS--VVRALGVSNVEVCGD 452 (664)
T ss_pred chhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHH--HHHHhCCCChhhhcc
Confidence 3334444455667777788999999999888855 444 333221 2233334444443222 2366764 46788
Q ss_pred HHH
Q 012211 113 IRS 115 (468)
Q Consensus 113 IRn 115 (468)
+=.
T Consensus 453 lLd 455 (664)
T PTZ00494 453 LLG 455 (664)
T ss_pred HHH
Confidence 654
No 31
>PRK01581 speE spermidine synthase; Validated
Probab=40.02 E-value=26 Score=37.22 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=14.5
Q ss_pred CCeEEEEeCCccchHHHHHHH
Q 012211 59 QPSLLVFSGGTAFNGVVEELK 79 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk 79 (468)
..+|+++|||+|. .+...|+
T Consensus 151 PkrVLIIGgGdG~-tlrelLk 170 (374)
T PRK01581 151 PKRVLILGGGDGL-ALREVLK 170 (374)
T ss_pred CCEEEEECCCHHH-HHHHHHh
Confidence 4599999999998 3344444
No 32
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=39.36 E-value=19 Score=32.72 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCEEEEcCCCchhhhcccccc----hhHHHHHhcCCCCEEEEeCCCCC---CCCCCCCHHHHHHHHHH
Q 012211 308 SAVLDQLNAVDCIIYAMGSLFTSICPSLVL----LGIGEIISSRSCPKVLLLNGLED---RETSGFSASCFVTAITD 377 (468)
Q Consensus 308 p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv----~GI~eAI~~s~a~kV~I~Nl~~~---gET~g~s~~d~v~al~~ 377 (468)
..++-...+||+|+ || ..-++||=+. |-+++||.+|+|+|++++=.... --+...++.++++.+.+
T Consensus 56 NaIv~n~~~aDiIv-Gp---igIv~a~smlGEiTp~mA~AI~~S~A~KiLiPl~~~~~~ivG~~~~pl~~li~~~v~ 128 (131)
T PF12953_consen 56 NAIVVNARKADIIV-GP---IGIVIANSMLGEITPAMAEAIAQSPAKKILIPLNRCNIEIVGVENEPLPHLIDEAVE 128 (131)
T ss_pred chheeccCCCCEEE-Cc---HHHhccCcccccccHHHHHHHhcCCCCEEEEeecCCCCEEECCCCCCHHHHHHHHHH
Confidence 34455567789776 43 3345566554 56789999999999998532111 22345677777776654
No 33
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=39.35 E-value=26 Score=37.28 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=21.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITT 83 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~ 83 (468)
+||||+|||.|.-..++.|++...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~ 25 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK 25 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC
Confidence 489999999999999999987743
No 34
>PRK07236 hypothetical protein; Provisional
Probab=38.31 E-value=33 Score=35.52 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=26.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
.++|+|+|||-+...+...|++.+.+++.+=
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 4699999999999999999999887765554
No 35
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=37.27 E-value=45 Score=31.62 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=24.1
Q ss_pred CeEEEEeCCccchHHHHHHHcC------CCCeEEEEeCC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI------TTRVAHVLPVS 92 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~------~~~lTaIVtv~ 92 (468)
.++|+++||||+.-++.-++++ ..+++.+..+-
T Consensus 105 ~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r 143 (234)
T cd06183 105 KHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR 143 (234)
T ss_pred cEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecC
Confidence 6899999999998888777665 23455555544
No 36
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=37.02 E-value=50 Score=30.84 Aligned_cols=36 Identities=8% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC-----CCeEEEEeCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~-----~~lTaIVtv~D 93 (468)
...++|+|+||||+.-++.=++.+. .+++.+..+-+
T Consensus 96 ~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~ 136 (223)
T cd00322 96 ESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGART 136 (223)
T ss_pred cCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 4568999999999998887666552 34555544433
No 37
>PRK06847 hypothetical protein; Provisional
Probab=36.87 E-value=36 Score=34.72 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~ 33 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLV 33 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999988876555
No 38
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=36.79 E-value=34 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv 91 (468)
-.+.+|||+|||.-...=++-|-+.+.++++|-.-
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 45779999999998888888888888888887443
No 39
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=36.22 E-value=36 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=27.9
Q ss_pred CCCCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 53 SNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 53 ~~~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|..+.+|+|+|||-+.-.....|.+...+++.+
T Consensus 134 ~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 134 KRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred CCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 345677889999999987777888888877776543
No 40
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=36.09 E-value=24 Score=38.16 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhhcCCCCCCeEEeCcc-----CCCceEEEEEEcCCcEEeeeeeecCC
Q 012211 212 SLDAAIFLFSRVSDIPSESQVLPVIS-----TNDRLTLGCELGDGTVIRGQNEISHP 263 (468)
Q Consensus 212 sl~~AI~~~s~~l~I~~~g~VlP~~~-----T~~~v~L~A~l~dG~~v~GE~~I~~~ 263 (468)
.|++.+...+.-.||+ ++.-.. .++.-...+++++|+.+.+.+.|...
T Consensus 155 ~fd~~L~~~A~~~Gv~----~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVE----VIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHTT-E----EEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHhcCCCE----EEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECC
Confidence 5788888888888874 333211 12222346788899999999999864
No 41
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=35.99 E-value=54 Score=31.68 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC--CeEEEEeCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT--RVAHVLPVSDD 94 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~--~lTaIVtv~Dd 94 (468)
..++|+||||||++-++.-|+.... +++.+.-+-+.
T Consensus 120 ~~~~vlia~GtGi~p~~~il~~~~~~~~~~~~~~~~~~ 157 (235)
T cd06193 120 ADWYLLAGDETALPAIAAILEELPADARGTALIEVPDA 157 (235)
T ss_pred cceEEEEeccchHHHHHHHHHhCCCCCeEEEEEEECCH
Confidence 4589999999999999988887643 56666655554
No 42
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=35.81 E-value=96 Score=32.06 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=83.8
Q ss_pred CCCccEEEEecCCCCCCccccCCCCCHHHHHHHhcCCEEE-------EcCCCchhhhcccccchhHHHHHhcC-------
Q 012211 282 PSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCII-------YAMGSLFTSICPSLVLLGIGEIISSR------- 347 (468)
Q Consensus 282 ~~~I~rV~l~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIv-------lGPGSlyTSIiPnLlv~GI~eAI~~s------- 347 (468)
..+|+|=|=.+ .|....+|+...+-||-.. =-||- |-+|-+ -=.|.++||+++
T Consensus 121 k~~~~rNFGm~----------~PeGyRKAlRlm~~AekF~lPiitfIDT~GA-ypG~~A--EErGQ~eAIA~nL~em~~L 187 (317)
T COG0825 121 KEKLKRNFGMP----------RPEGYRKALRLMKLAEKFGLPIITFIDTPGA-YPGIGA--EERGQSEAIARNLREMARL 187 (317)
T ss_pred hhHHHhcCCCC----------CchHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCcch--hhcccHHHHHHHHHHHhCC
Confidence 45676665222 4677788888888888322 23332 222222 124678999875
Q ss_pred CCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCCCccccceeeEecCCCC------CcCCHHHHHhCC
Q 012211 348 SCPKVLLLNG-LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE------IPLDIQCLASQG 420 (468)
Q Consensus 348 ~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~------v~~D~~~l~~~G 420 (468)
+.|.|-|.=. +-.|-+.++-+.|.|..+.... +++. .|+..-.-++-|.... ..+-...|.++|
T Consensus 188 kvPiI~iVIGEGgSGGALAi~vad~V~mle~s~-ySVi--------sPEG~AsILWkD~~ka~eAAe~mkita~dLk~lg 258 (317)
T COG0825 188 KVPIISIVIGEGGSGGALAIGVADRVLMLENST-YSVI--------SPEGCASILWKDASKAKEAAEAMKITAHDLKELG 258 (317)
T ss_pred CCCEEEEEecCCCchhhHHhhHHHHHHHHHhce-eeec--------ChhhhhhhhhcChhhhHHHHHHcCCCHHHHHhCC
Confidence 4455444333 5678888999999999876432 2221 2322222222232211 124455677788
Q ss_pred CeEEEeccceecCCCCCccCHHHHHHHHHHHHhh
Q 012211 421 IFDVITVHSICDPKVGIIFDPKSLIQAIADLLGR 454 (468)
Q Consensus 421 i~~vi~~~~l~~~~~~~rhD~~~La~al~~l~~~ 454 (468)
+- ...+..+.+..++|++..|..|.+.+..
T Consensus 259 iI----D~II~Ep~ggAhr~~~~~a~~l~~~l~~ 288 (317)
T COG0825 259 II----DGIIPEPLGGAHRDPEAAAEALKNALLK 288 (317)
T ss_pred Cc----ceeccCCCCccccCHHHHHHHHHHHHHH
Confidence 62 2223345556789999888888776653
No 43
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=35.80 E-value=56 Score=31.16 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcC-----CCCeEEEEeCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSDD 94 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~-----~~~lTaIVtv~Dd 94 (468)
..++++|+||||+.-++.=++.+ ..+++.+..+-+.
T Consensus 102 ~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~ 142 (231)
T cd06191 102 PGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTP 142 (231)
T ss_pred CCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCH
Confidence 45899999999997766555543 3456665555443
No 44
>PRK08163 salicylate hydroxylase; Provisional
Probab=35.03 E-value=40 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence 458999999999999999999988876655
No 45
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=34.96 E-value=41 Score=35.25 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.8
Q ss_pred CCeEEEEeCCccc----hHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAF----NGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl----~~llrgLk~~~~~lTaIV 89 (468)
-|||++.+||||. +.+++.|++...++..+=
T Consensus 5 ~~ki~i~aGgtsGhi~paal~~~l~~~~~~~~~~g 39 (385)
T TIGR00215 5 IPTIALVAGEASGDILGAGLRQQLKEHYPNARFIG 39 (385)
T ss_pred CCeEEEEeCCccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4899999999987 689999998777776654
No 46
>PRK06753 hypothetical protein; Provisional
Probab=34.76 E-value=37 Score=34.68 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=25.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
++|+|+|||-+...+...|++.+.+++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~ 29 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVF 29 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999988776554
No 47
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=34.61 E-value=42 Score=34.87 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
..+|+|+|||-+...+...|.+.+.+++.|=
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIE 48 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEe
Confidence 4589999999999999999999988766654
No 48
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=34.46 E-value=32 Score=34.05 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=25.4
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEEEeCCC
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~D 93 (468)
+|+|+|||-+...+...|++.+.+++.|=--.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999888666554333
No 49
>PRK09932 glycerate kinase II; Provisional
Probab=34.43 E-value=50 Score=35.18 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=40.0
Q ss_pred HHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC
Q 012211 312 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl 357 (468)
+.|+.||+||-|=|++-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 280 ~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 280 QAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred HHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 6789999999999999988888888999999777777888888754
No 50
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=34.27 E-value=61 Score=32.34 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCEEEEcCCCchhh
Q 012211 308 SAVLDQLNAVDCIIYAMGSLFTS 330 (468)
Q Consensus 308 p~ai~AI~~ADlIvlGPGSlyTS 330 (468)
.+++++|.++|+||+|-|+++..
T Consensus 56 ~~~~~~l~~~D~vI~gGG~l~~d 78 (298)
T TIGR03609 56 LAVLRALRRADVVIWGGGSLLQD 78 (298)
T ss_pred HHHHHHHHHCCEEEECCcccccC
Confidence 47889999999999999999964
No 51
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=33.54 E-value=51 Score=35.53 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+..+.+|+|+|||.+.-.....|++.+.+++.+
T Consensus 139 ~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 139 VKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVF 172 (471)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 3456779999999988888888999888875554
No 52
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=33.43 E-value=26 Score=31.17 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=18.3
Q ss_pred eEEEEeCCccchHHHHHHHcC
Q 012211 61 SLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~ 81 (468)
+||+++||+|..-++.=|.++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l 23 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDL 23 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHH
Confidence 799999999999988877765
No 53
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=33.01 E-value=38 Score=35.76 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.2
Q ss_pred CeEEEEeCCccchHHHHHHHcCCC--CeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITT--RVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~--~lTaI 88 (468)
+||||+|||.|.-..+..|+++.. ++|.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli 31 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVY 31 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 489999999999999999988754 44444
No 54
>PRK07538 hypothetical protein; Provisional
Probab=32.65 E-value=40 Score=35.28 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
++|+|+|||-+...+...|++.+.+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~ 29 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVF 29 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999987775554
No 55
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=32.29 E-value=1.6e+02 Score=29.08 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=36.8
Q ss_pred CHHHHHHHhcCCEEEE-cCCCchhhhcccccchhHHHH--HhcCCCCEEEEeCCC-C--CCCCC---CCCHHHHHHHHHH
Q 012211 307 NSAVLDQLNAVDCIIY-AMGSLFTSICPSLVLLGIGEI--ISSRSCPKVLLLNGL-E--DRETS---GFSASCFVTAITD 377 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvl-GPGSlyTSIiPnLlv~GI~eA--I~~s~a~kV~I~Nl~-~--~gET~---g~s~~d~v~al~~ 377 (468)
-.++.+++++||++++ |- | |.|.-...- .+..+..+|++.|.. . +...+ ...+.+-+..|++
T Consensus 169 ~~~~~~~~~~aDl~lviGT-S--------l~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~ 239 (244)
T PRK14138 169 LREAIRLSSKASLMIVMGS-S--------LVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMS 239 (244)
T ss_pred HHHHHHHHhcCCEEEEeCc-C--------CeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHH
Confidence 4678889999996655 32 2 222222222 123345567788983 2 22221 3357788888887
Q ss_pred Hhc
Q 012211 378 ALN 380 (468)
Q Consensus 378 ~lg 380 (468)
++|
T Consensus 240 ~~~ 242 (244)
T PRK14138 240 EGG 242 (244)
T ss_pred HhC
Confidence 765
No 56
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=32.24 E-value=68 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcC-----CCCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~-----~~~lTaIVtv~D 93 (468)
..++++++||||.+-++.=|+++ ..+++.+..+-+
T Consensus 122 ~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~ 161 (243)
T cd06216 122 PPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYART 161 (243)
T ss_pred CCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCC
Confidence 46899999999999988777665 245666665543
No 57
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=32.11 E-value=58 Score=30.72 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC-----CCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~-----~~lTaIVtv~D 93 (468)
..++++++||||+.-++.=|+.+. .+++.+..+-+
T Consensus 98 ~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 98 DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 457999999999998888777652 46777666554
No 58
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=32.03 E-value=23 Score=35.25 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCeEEEEeCCccchHH----HHHHHcCCCCeEEEEeCC
Q 012211 59 QPSLLVFSGGTAFNGV----VEELKNITTRVAHVLPVS 92 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~l----lrgLk~~~~~lTaIVtv~ 92 (468)
.-|||+||||||-+-. ..+|+....+-..|+..+
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 3599999999998743 234543333333444433
No 59
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=31.77 E-value=66 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---CCCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~~~lTaIVtv~D 93 (468)
..++++++||||+.-++.=++.+ ..+++.+..+-+
T Consensus 97 ~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~ 134 (243)
T cd06192 97 GGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKK 134 (243)
T ss_pred CCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCc
Confidence 56899999999998877666554 346777666554
No 60
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=31.76 E-value=57 Score=36.82 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=29.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCC-CCCcchH
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS-DDGGSTA 99 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~-DdGGSSG 99 (468)
.+|+|+|||.....+...|.+.+.+++.|=--. -..|+||
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg 301 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASG 301 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCc
Confidence 389999999998999999988887765554321 1246666
No 61
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=31.69 E-value=63 Score=33.61 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC-C-CCeEEE----EeCCCCCcchHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI-T-TRVAHV----LPVSDDGGSTAEIVRVLG 106 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~-~-~~lTaI----Vtv~DdGGSSG~LR~~~g 106 (468)
....|+|+|||.-...+...|.+. + .+++.| +.....|.++|.+|..+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~ 83 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYL 83 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeeccc
Confidence 445899999997666666677764 5 355554 233456677777765554
No 62
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.52 E-value=46 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.8
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
...+|++||||.|.. ++.+.++.
T Consensus 76 ~p~~VLiiGgG~G~~--~~ell~~~ 98 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGT--ARELLKHP 98 (246)
T ss_dssp ST-EEEEEESTTSHH--HHHHTTST
T ss_pred CcCceEEEcCCChhh--hhhhhhcC
Confidence 567999999999854 66666664
No 63
>PRK07588 hypothetical protein; Provisional
Probab=31.21 E-value=44 Score=34.54 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=25.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
++|+|+|||-+...+...|.+.+.+++.+=
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E 30 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIE 30 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEe
Confidence 489999999999999999999887765553
No 64
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=31.18 E-value=41 Score=35.17 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
..||||+|||.+.-..++.|++...+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~ 28 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFT 28 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCC
Confidence 45899999999999999999987654
No 65
>PRK12831 putative oxidoreductase; Provisional
Probab=31.07 E-value=58 Score=35.19 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 54 ~~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+..+.+|+|+|||-+.-....-|++.+.+++.+
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 34567889999999988777888888888776443
No 66
>PRK15005 universal stress protein F; Provisional
Probab=30.72 E-value=83 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.9
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEE
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLL 354 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I 354 (468)
....++..+ ++|+||+|.. -.. +..+++..+.+.| ++++||+..|
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~--~~~-~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASH--RPD-ITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCC--CCC-chheeecchHHHHHHhCCCCEEEe
Confidence 466777766 8999999854 234 4567777777664 6678888765
No 67
>PRK06696 uridine kinase; Validated
Probab=30.33 E-value=1.4e+02 Score=28.65 Aligned_cols=51 Identities=22% Similarity=0.118 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCccch--HHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHcCCC
Q 012211 58 TQPSLLVFSGGTAFN--GVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGGP 108 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~--~llrgLk~~~--~~lTaIVtv~DdGGSSG~LR~~~g~~ 108 (468)
.+|.||.|+|++|.- ++.+.|.+.- ...++++-..||---+-..|..+|..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~ 74 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRE 74 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCC
Confidence 468899999988774 4555565442 24677777789987677777776643
No 68
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.05 E-value=59 Score=29.23 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=35.5
Q ss_pred CHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCC--CCEEEEe
Q 012211 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRS--CPKVLLL 355 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~--a~kV~I~ 355 (468)
.++++++..+.|.=+++-+|+.|+-++. ++.+.+++++.. ..+|++.
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHhcCCCCCEEEEe
Confidence 4677888887787777778999888887 789999998764 3456553
No 69
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=29.55 E-value=62 Score=34.46 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC
Q 012211 312 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl 357 (468)
+.|++||+||-|=|++-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 279 ~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~ 324 (375)
T TIGR00045 279 QKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS 324 (375)
T ss_pred HHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecc
Confidence 6789999999999999877777778889998777777888888754
No 70
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.50 E-value=1.5e+02 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=38.3
Q ss_pred CeEEEEeCCcc--chHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHc
Q 012211 60 PSLLVFSGGTA--FNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVL 105 (468)
Q Consensus 60 pkIVv~gGGTG--l~~llrgLk~~--~~~lTaIVtv~DdGGSSG~LR~~~ 105 (468)
+++++|+|=++ +..++..+|+. ...+.|++|..-=.|+...|-+++
T Consensus 1 e~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~~El 50 (58)
T PF12646_consen 1 EEFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLLEEL 50 (58)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHHHHH
Confidence 47889998766 78899999987 467999999999999988877654
No 71
>PLN02366 spermidine synthase
Probab=29.37 E-value=55 Score=33.71 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..||+++|||+|. +++.+.++
T Consensus 92 pkrVLiIGgG~G~--~~rellk~ 112 (308)
T PLN02366 92 PKKVLVVGGGDGG--VLREIARH 112 (308)
T ss_pred CCeEEEEcCCccH--HHHHHHhC
Confidence 5689999999987 56677666
No 72
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=29.09 E-value=71 Score=32.57 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=33.4
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHH
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRS 115 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn 115 (468)
+||+++|||.|. ++|.+-++.. +.-|+-|==|.--=-..|+.|+.+..|..+.
T Consensus 78 k~VLiiGgGdG~--tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 78 KRVLIIGGGDGG--TLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred CeEEEECCCccH--HHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 499999999984 6777766643 4444444335444444567777777665533
No 73
>PRK05802 hypothetical protein; Provisional
Probab=29.05 E-value=68 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---CCCeEEEEeC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPV 91 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~~~lTaIVtv 91 (468)
+.++++++||+|++-++.-++++ ..+++.+...
T Consensus 172 ~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~ 207 (320)
T PRK05802 172 NGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDK 207 (320)
T ss_pred CCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 45899999999999988777655 3455555543
No 74
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=28.62 E-value=78 Score=31.32 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=34.8
Q ss_pred ccccchhhhhhhhccccCCCCCCCCeEEEEeCCc---cchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCc
Q 012211 36 RKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGT---AFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGD 112 (468)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~pkIVv~gGGT---Gl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GD 112 (468)
|+-||..+..-...--..+.+...-.++++++++ -+..+...+.+.+ +++..+ ++|+||.|.+.+.-=.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~a~~~~~~~~~l~~~Fe~~~-g~~v~~----~~~~Sg~l~~qi~~g~~~D 77 (257)
T PRK10677 3 RKWLRLFAGAVLSFAVAGNALADEGKITVFAAASLTNALQDIAAQYKKEK-GVDVVS----SFASSSTLARQIEQGAPAD 77 (257)
T ss_pred chHHHHHHHHHHHhhccccccccCCcEEEEEecChHHHHHHHHHHHHhhh-CCeEEE----EecccHHHHHHHHcCCCCC
Confidence 3445554444332222223334444677777654 2333344444332 455544 4556677776654324466
Q ss_pred H
Q 012211 113 I 113 (468)
Q Consensus 113 I 113 (468)
|
T Consensus 78 v 78 (257)
T PRK10677 78 L 78 (257)
T ss_pred E
Confidence 4
No 75
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=28.34 E-value=50 Score=31.82 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---C--CCeEEEEeC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---T--TRVAHVLPV 91 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~--~~lTaIVtv 91 (468)
..++|+|+||||+.-++.-++.+ . .+++.+...
T Consensus 109 ~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~ 146 (238)
T cd06211 109 QRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGA 146 (238)
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 36899999999998887766544 1 245555544
No 76
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=28.31 E-value=2.1e+02 Score=29.02 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred cchhHHHHHh---cCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHHHHhcccCC-CCCCCCCCCcccccee-------eEe
Q 012211 336 VLLGIGEIIS---SRSCPKVLLLNG-LEDRETSGFSASCFVTAITDALNRAYG-DPQKSLKNSPSQYINT-------ILV 403 (468)
Q Consensus 336 lv~GI~eAI~---~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~~~lg~~~~-~~~~~~~~~~~~~l~~-------~~~ 403 (468)
.+||..++|+ +...|.+||+|. +..+ ....+.|....+.... +.++-......+++.. |++
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~~s~-------~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~vi 97 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNSTRSR-------EVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVI 97 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCCCCH-------HHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEE
Confidence 4677777776 566789999998 4433 3344444433333221 1111000111222222 222
Q ss_pred cCCCCCcCCHHHHHhCCCeEEEeccc-----eecCCCCCccCHHHHHHHHHHHHhh
Q 012211 404 PEDGEIPLDIQCLASQGIFDVITVHS-----ICDPKVGIIFDPKSLIQAIADLLGR 454 (468)
Q Consensus 404 d~~~~v~~D~~~l~~~Gi~~vi~~~~-----l~~~~~~~rhD~~~La~al~~l~~~ 454 (468)
-++ -+.+.++..|+..+-..+. +.-..+ ..+..++++.++..+...
T Consensus 98 G~~----~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d-~~~~~e~l~~a~~~i~~g 148 (269)
T COG0647 98 GEE----GLKEELEGAGFELVDEEEPARVDAVVVGLD-RTLTYEKLAEALLAIAAG 148 (269)
T ss_pred CCc----chHHHHHhCCcEEeccCCCCcccEEEEecC-CCCCHHHHHHHHHHHHcC
Confidence 221 2567788888763321111 111111 367778888888777655
No 77
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=28.19 E-value=51 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=24.6
Q ss_pred hccccCCCC---CCCCeEEEEeCCccchHHHHHHHcC
Q 012211 48 HCRCFSNPT---HTQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 48 ~~~~~~~~~---~~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..-||++.. ....++|+++||+|..-++.=|+.+
T Consensus 92 v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l 128 (210)
T cd06186 92 VEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDL 128 (210)
T ss_pred EECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHH
Confidence 344566543 3456899999999999888777654
No 78
>PRK05868 hypothetical protein; Validated
Probab=28.17 E-value=55 Score=33.98 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=25.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
++|+|+|||-+...+...|++.+.+++.|=
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 489999999999999999999888766553
No 79
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=27.92 E-value=58 Score=33.98 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=27.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv 91 (468)
..+|+|+|||-+...+...|++.+.+++.|=.-
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999998887655443
No 80
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=27.61 E-value=76 Score=30.51 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=19.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.-++.+
T Consensus 101 ~~~~vlIagGtGiaP~~~~l~~~ 123 (241)
T cd06195 101 GKRLWLLATGTGIAPFLSMLRDL 123 (241)
T ss_pred CceEEEEeeccchhhHHHHHHHH
Confidence 46899999999999888777665
No 81
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=27.43 E-value=1.2e+02 Score=30.37 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---CCCeEEEEe
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLP 90 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~~~lTaIVt 90 (468)
..++++++||+|+.-++.-++++ ..+++.+..
T Consensus 98 ~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g 132 (281)
T PRK06222 98 FGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIG 132 (281)
T ss_pred CCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEe
Confidence 35899999999998876655543 344554443
No 82
>PRK08051 fre FMN reductase; Validated
Probab=27.38 E-value=50 Score=31.82 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=18.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.=++.+
T Consensus 102 ~~~~vliagG~GiaP~~~~l~~~ 124 (232)
T PRK08051 102 ERPLLLIAGGTGFSYARSILLTA 124 (232)
T ss_pred CCcEEEEecCcCcchHHHHHHHH
Confidence 45799999999999887766654
No 83
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=27.28 E-value=58 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=24.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCC-CeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITT-RVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~-~lTaIV 89 (468)
+||+|+|||-|.-.+...|++.+. +++.+=
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~E 31 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFE 31 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 489999999999999999998864 655543
No 84
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=27.25 E-value=56 Score=34.94 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=26.5
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCc
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGG 96 (468)
+||||||||.|.......+.+.+.+ ++||--.+-||
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~-V~lie~~~~GG 36 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKN-VTLIDEADLGG 36 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEECCcccc
Confidence 3899999999999988888888776 44444333343
No 85
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=27.15 E-value=84 Score=34.07 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVA 86 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lT 86 (468)
.+....+|+|||||-+.-..++.|++.+.+++
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~ 37 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVV 37 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEE
Confidence 35567899999999888888888888776544
No 86
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=27.12 E-value=68 Score=34.36 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.|..+.+|+|+|||-+.-....-|++.+.++|.+
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vi 162 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVF 162 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 3556789999999988888888898888776544
No 87
>PRK09982 universal stress protein UspD; Provisional
Probab=27.05 E-value=68 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHH--HhcCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEEe
Q 012211 308 SAVLDQ--LNAVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLL 355 (468)
Q Consensus 308 p~ai~A--I~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I~ 355 (468)
...++. =.+||+||+|-+ .+.+- -++ |+.+.+ +.++||+..|.
T Consensus 93 ~~I~~~A~~~~aDLIVmG~~--~~~~~-~~~--~va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 93 ETLLEIMQKEQCDLLVCGHH--HSFIN-RLM--PAYRGMINKMSADLLIVP 138 (142)
T ss_pred HHHHHHHHHcCCCEEEEeCC--hhHHH-HHH--HHHHHHHhcCCCCEEEec
Confidence 444443 358999999976 45443 333 488665 55678776653
No 88
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=26.73 E-value=60 Score=31.58 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=23.5
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+|||+|||.+.-..+..|++...+++.|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~li 29 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLII 29 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 6999999999999999999887775443
No 89
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.60 E-value=59 Score=35.16 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=47.6
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCC----cchHHHHHHcCCCCCCcHHHHHHHhcCCCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG----GSTAEIVRVLGGPAVGDIRSRCLRLSDEST 125 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdG----GSSG~LR~~~g~~~~GDIRn~L~aLa~~~~ 125 (468)
-.+.+|+|+|||.-..+=++.|.+.+.++|+|-+-.++. ...|++++.-.-.-++||..+-+.++..++
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d 82 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDD 82 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCC
Confidence 467899999999987777788989999999987766543 122333333344557888776666555443
No 90
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=26.38 E-value=60 Score=34.73 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=23.6
Q ss_pred CeEEEEeCC-ccchHHHHHHHcC-CCCeEEEEeCCC-CCcchH
Q 012211 60 PSLLVFSGG-TAFNGVVEELKNI-TTRVAHVLPVSD-DGGSTA 99 (468)
Q Consensus 60 pkIVv~gGG-TGl~~llrgLk~~-~~~lTaIVtv~D-dGGSSG 99 (468)
-.|+|+||| ||++.-..-.++. +.+++.+=- .. -+|.||
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~-~~~g~GaSg 66 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA-DLCGAGASG 66 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC-Ccccccccc
Confidence 479999999 8888776654432 445543322 11 245666
No 91
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.29 E-value=79 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchH
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTA 99 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG 99 (468)
+..+|||+|||--.....-.|.+.+.+++.|=.-.--+|+||
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~ 44 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAG 44 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchh
Confidence 467999999998888888899988775555543222224555
No 92
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=26.29 E-value=1e+02 Score=30.01 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC---CCCeEEEEeCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVS 92 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~---~~~lTaIVtv~ 92 (468)
...++++|+||||+.-++.=++++ ..+++.+...-
T Consensus 101 ~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r 138 (250)
T PRK00054 101 IGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGAR 138 (250)
T ss_pred CCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcC
Confidence 446899999999999988766654 34666665543
No 93
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=25.93 E-value=66 Score=29.52 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
-.+.+|+|+|||.-...++..|.+...++|.+.
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEE
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEe
Confidence 467899999999999999999998887777665
No 94
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=25.74 E-value=77 Score=30.60 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=21.5
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd 94 (468)
...+||=+|||+|. ++.++.+..++++++| .|=
T Consensus 100 ~~~~vvDvGGG~G~--~~~~l~~~~P~l~~~v--~Dl 132 (241)
T PF00891_consen 100 GFKTVVDVGGGSGH--FAIALARAYPNLRATV--FDL 132 (241)
T ss_dssp TSSEEEEET-TTSH--HHHHHHHHSTTSEEEE--EE-
T ss_pred CccEEEeccCcchH--HHHHHHHHCCCCccee--ecc
Confidence 34579999999994 4555666667887654 553
No 95
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=25.30 E-value=92 Score=35.67 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=27.8
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
....+|+|+|||-|.-.+..+|++.+.+++.+=
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFE 111 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 345799999999999999999999887766553
No 96
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=25.26 E-value=1e+02 Score=29.28 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=23.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcC-----CCCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~-----~~~lTaIVtv~D 93 (468)
..++++++||||+.-++.-++.+ ..+++.+..+-+
T Consensus 107 ~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~ 146 (235)
T cd06217 107 GDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSART 146 (235)
T ss_pred CceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 46899999999998776655544 134555554443
No 97
>PRK06475 salicylate hydroxylase; Provisional
Probab=25.10 E-value=71 Score=33.27 Aligned_cols=30 Identities=23% Similarity=0.047 Sum_probs=26.2
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
.||+|+|||-+.-.+...|++.+.+++.+=
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E 32 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIE 32 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 589999999999999999999888766554
No 98
>PRK06370 mercuric reductase; Validated
Probab=25.01 E-value=65 Score=34.45 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.5
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.|||||||.|.......+++++.+++.|
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~li 34 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALI 34 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999999999998875555
No 99
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=24.93 E-value=1e+02 Score=30.03 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC---CCeEEEEeCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVS 92 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~---~~lTaIVtv~ 92 (468)
...++++|+||||+.-++.-++.+. .+++.+..+-
T Consensus 97 ~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r 134 (246)
T cd06218 97 DDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFR 134 (246)
T ss_pred CCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 3568999999999999887776653 3455555444
No 100
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.93 E-value=1e+02 Score=27.95 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=33.5
Q ss_pred CCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCC
Q 012211 305 TANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRS 348 (468)
Q Consensus 305 ~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~ 348 (468)
.+.++++++..+-|.=++|.+++.|+-++ .++.+.+++++..
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~--~~~~~~~~l~~~g 80 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEI--DCKGLRQKCDEAG 80 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHH--HHHHHHHHHHHCC
Confidence 44588899988877777788999997776 4788999998875
No 101
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=24.92 E-value=98 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=23.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC-----CCeEEEEeCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVS 92 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~-----~~lTaIVtv~ 92 (468)
..++++|+||||+.-++.=++++. .+++.+..+-
T Consensus 108 ~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r 146 (236)
T cd06210 108 LRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVN 146 (236)
T ss_pred CccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecC
Confidence 357999999999998877666542 3455555443
No 102
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=24.91 E-value=61 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC-----CCeEEEEeCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVS 92 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~-----~~lTaIVtv~ 92 (468)
..++|+|+||||+.-++.=++.+. .+++.+..+-
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r 136 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGAR 136 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 458999999999999876665542 3455555443
No 103
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=24.28 E-value=1e+02 Score=31.65 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+.|.||||+.-+++=++..
T Consensus 155 ~~~~l~miAgGtGItPmlqii~~i 178 (286)
T KOG0534|consen 155 KAKHLGMIAGGTGITPMLQLIRAI 178 (286)
T ss_pred CcceEEEEecccchhhHHHHHHHH
Confidence 367999999999999999877766
No 104
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.08 E-value=1.2e+02 Score=29.08 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=33.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC-CCeEEEEeCCCC-CcchHHHHHHcCCCCCCcHH
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDD-GGSTAEIVRVLGGPAVGDIR 114 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~-~~lTaIVtv~Dd-GGSSG~LR~~~g~~~~GDIR 114 (468)
..||.+||.|.-...++++|.+.. .+...|+.+.++ --..-.+.+.+++....|+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWK 61 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChH
Confidence 468999999999999999998664 344434333332 22333444445544444443
No 105
>PRK05920 aromatic acid decarboxylase; Validated
Probab=24.04 E-value=83 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCCeE-EEEeCCccchHHH---HHHHcCCCCeEEEEe
Q 012211 58 TQPSL-LVFSGGTAFNGVV---EELKNITTRVAHVLP 90 (468)
Q Consensus 58 ~~pkI-Vv~gGGTGl~~ll---rgLk~~~~~lTaIVt 90 (468)
+++|| +.++||.|..+.+ +.|++.+.++.+|+|
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45665 6699999988754 455555677777774
No 106
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=23.99 E-value=73 Score=33.04 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=21.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
++|+|+|||--...+...|.+.+.+++.+=-
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4899999996555566667777776555443
No 107
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=23.91 E-value=87 Score=33.11 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHH-cCCCCeEEEEeCCCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELK-NITTRVAHVLPVSDD 94 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk-~~~~~lTaIVtv~Dd 94 (468)
.+.=+|+|.|||+|.-.+..-+. +++..-.+||-..||
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45559999999999998888887 557888899998887
No 108
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=23.84 E-value=1.6e+02 Score=30.16 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=29.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG 95 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdG 95 (468)
+|||+||-+.=.-..++.|.+...++.+|||..|.-
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~ 36 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRP 36 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 589999877766788888877678999999988763
No 109
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=23.80 E-value=1e+02 Score=32.24 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=18.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.=++.+
T Consensus 261 ~~~~vlIagGtGIaP~~s~l~~~ 283 (399)
T PRK13289 261 DTPVVLISGGVGITPMLSMLETL 283 (399)
T ss_pred CCcEEEEecCccHHHHHHHHHHH
Confidence 45899999999999887766655
No 110
>PLN02985 squalene monooxygenase
Probab=23.62 E-value=65 Score=35.42 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=27.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
....+|+|+|||-+...+..+|.+.+.+++.|=
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlE 73 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIE 73 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 344589999999999999999999877765554
No 111
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.51 E-value=59 Score=33.23 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.0
Q ss_pred eEEEEeCCccchHHHHHHHcC
Q 012211 61 SLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~ 81 (468)
+|||+|||.|.-..++.|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~ 21 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMK 21 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCc
Confidence 699999999998888888643
No 112
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=23.49 E-value=66 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=19.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++++++||||.+-++.=++.+
T Consensus 108 ~~~~llia~GtGiap~~~~~~~~ 130 (241)
T cd06214 108 ARHYVLFAAGSGITPVLSILKTA 130 (241)
T ss_pred CCcEEEEecccChhhHHHHHHHH
Confidence 56899999999998887766654
No 113
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.48 E-value=80 Score=30.59 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCeE-EEEeCCccchHH----HHHHHcCCCCeEEEEeC
Q 012211 59 QPSL-LVFSGGTAFNGV----VEELKNITTRVAHVLPV 91 (468)
Q Consensus 59 ~pkI-Vv~gGGTGl~~l----lrgLk~~~~~lTaIVtv 91 (468)
++|| +.++||.|..+. ++.|++.+.++..|+|-
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 5565 559999998883 66777767888777743
No 114
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=23.36 E-value=1e+02 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC-----CCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~-----~~lTaIVtv~D 93 (468)
..++++|+||||+.-++.=++.+. .+++.+..+-+
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~ 134 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRD 134 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECC
Confidence 468999999999999887666552 35666665543
No 115
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=23.21 E-value=3.6e+02 Score=26.69 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred ccEEEEecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCc-hh----hhcccccchhHHHHHhcCCCCEEEEeCCCC
Q 012211 285 IKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSL-FT----SICPSLVLLGIGEIISSRSCPKVLLLNGLE 359 (468)
Q Consensus 285 I~rV~l~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSl-yT----SIiPnLlv~GI~eAI~~s~a~kV~I~Nl~~ 359 (468)
-+++.|.+. -.++++.++.+++||++|.-.--+ .. .---++-+..+.+..++.+++++++.-+.+
T Consensus 200 g~~i~y~gD----------t~~~~~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~ 269 (299)
T TIGR02651 200 GRKIAYTGD----------TRPCEEVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISP 269 (299)
T ss_pred CcEEEEecC----------CCChHHHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 357888763 345789999999999887754311 00 112356677777777788888888888753
No 116
>PF08843 DUF1814: Nucleotidyl transferase of unknown function (DUF1814); InterPro: IPR014942 This large group of proteins are largely uncharacterised. Some are annotated as abortive infective proteins but support for this annotation could not be found.
Probab=23.20 E-value=39 Score=31.77 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.2
Q ss_pred EEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC
Q 012211 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd 94 (468)
=.+|.|||.+.....+..+++.+|-.++...+.
T Consensus 14 ~~~l~GGtal~l~~~~~~R~S~DiD~~~~~~~~ 46 (233)
T PF08843_consen 14 PFVLKGGTALSLRYGGSHRFSEDIDFVVDRDDW 46 (233)
T ss_pred CEEEECHHHHHHhcCCCcEecCcccEEEecccc
Confidence 368999999999988888999999999887765
No 117
>PRK10116 universal stress protein UspC; Provisional
Probab=23.14 E-value=1.3e+02 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=30.0
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHH-HHHhcCCCCEEEEe
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIG-EIISSRSCPKVLLL 355 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~-eAI~~s~a~kV~I~ 355 (468)
....++.++ ++|+||+|--.. ++ +..+. .+. ..|++++||+..|.
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~~~~-~~-~~~~~--s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGNHNH-SF-FSRAS--CSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcc-hH-HHHHH--HHHHHHHhcCCCCEEEEe
Confidence 467788888 999999976654 22 33333 244 55677788887663
No 118
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=23.09 E-value=69 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++++++||||+.-++.=++++
T Consensus 97 ~~~~v~iagG~Giap~~~~l~~~ 119 (222)
T cd06194 97 EGPLLLVGAGTGLAPLWGIARAA 119 (222)
T ss_pred CCCEEEEecCcchhhHHHHHHHH
Confidence 45899999999999888766643
No 119
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=22.86 E-value=1.2e+02 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---CCCeEEEEeCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVSD 93 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~~~lTaIVtv~D 93 (468)
..++++++||||+.-++.=++.+ ..+++.+...-+
T Consensus 98 ~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r~ 135 (211)
T cd06185 98 ARRHLLIAGGIGITPILSMARALAARGADFELHYAGRS 135 (211)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 45899999999999887765554 345666655443
No 120
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=22.85 E-value=69 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.515 Sum_probs=18.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++++++||||+.-++.=++.+
T Consensus 103 ~~~~l~iagG~Giap~~~~l~~~ 125 (232)
T cd06212 103 DRPIVLIGGGSGMAPLLSLLRDM 125 (232)
T ss_pred CCcEEEEecCcchhHHHHHHHHH
Confidence 45899999999999887766654
No 121
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=22.63 E-value=1.3e+02 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCC--CCeEEEEeC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPV 91 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~--~~lTaIVtv 91 (468)
...+++++||||+.-++.-++.+. .+++.+..+
T Consensus 88 ~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~ 122 (233)
T cd06220 88 GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGA 122 (233)
T ss_pred CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEec
Confidence 568999999999998888776553 456555554
No 122
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=22.47 E-value=1.1e+02 Score=34.57 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+..+++|+|+|||-+.-..+.-|++.+.++|.+
T Consensus 189 ~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 189 APKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 3556789999999999999999999998886654
No 123
>PRK09126 hypothetical protein; Provisional
Probab=22.29 E-value=81 Score=32.44 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~ 32 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLI 32 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 347999999999999999999987776554
No 124
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=22.27 E-value=76 Score=32.84 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=26.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
.+|+|+|||-+...+..+|.+.+.+++.|=
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEc
Confidence 479999999999999999999888877765
No 125
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.14 E-value=1.2e+02 Score=27.39 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCE-EEEeCCC
Q 012211 308 SAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPK-VLLLNGL 358 (468)
Q Consensus 308 p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~k-V~I~Nl~ 358 (468)
..+.+++..+|.|+..-|..... ...+..+.+|+++++.++ |+++..+
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~---~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKD---VDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTH---HHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhcchhhhhhhhhccc---ccccccccccccccccccceeeeccc
Confidence 57788999999999998877764 666778888888888777 4555554
No 126
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=22.13 E-value=88 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=35.3
Q ss_pred eEEEEeCCccchHHHHHHHcCC---CCeEEEEeCCCCCcchHHHHHHcCCCCCC
Q 012211 61 SLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVSDDGGSTAEIVRVLGGPAVG 111 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~---~~lTaIVtv~DdGGSSG~LR~~~g~~~~G 111 (468)
||.+||+|.=...|+++|.+.. .++..+. .-+.-+..++.++++.-...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~--~r~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVS--SRSPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEE--ESSHHHHHHHHHHCTTEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeec--cCcHHHHHHHHHhhcccccc
Confidence 7899999999999999999887 5555443 34444566677777744444
No 127
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=22.13 E-value=46 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHhcCCC
Q 012211 108 PAVGDIRSRCLRLSDES 124 (468)
Q Consensus 108 ~~~GDIRn~L~aLa~~~ 124 (468)
..+||+||.+.+++...
T Consensus 30 ~G~gD~Rhvl~Tl~~~~ 46 (100)
T PF14737_consen 30 LGCGDLRHVLKTLASLP 46 (100)
T ss_pred ecCccHHHHHHHHHhcc
Confidence 57899999999999764
No 128
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=22.12 E-value=82 Score=37.84 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=27.7
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+..+.||+|+|||-+.-..+..|++.+.++|.+
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~ 568 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVF 568 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 356789999999999989999999988876644
No 129
>PRK07045 putative monooxygenase; Reviewed
Probab=22.04 E-value=1.3e+02 Score=30.89 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=25.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||-+...+...|++.+.+++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~ 34 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVV 34 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999987776555
No 130
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.03 E-value=87 Score=36.00 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+..+++|+|+|||.+.-....-|.+.+.++|.+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~ 460 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVF 460 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 457889999999999989999999888875544
No 131
>PRK10342 glycerate kinase I; Provisional
Probab=21.85 E-value=1.2e+02 Score=32.43 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC
Q 012211 312 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl 357 (468)
+.|++||+||-|=|++-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 280 ~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 280 EHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred HHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 6788999999999999887777778889998777777888888754
No 132
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=21.78 E-value=75 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=17.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..+|++++||||+.-++.=++.+
T Consensus 97 ~~~illIagG~GiaP~~~~l~~~ 119 (232)
T cd06190 97 DRDIVCIAGGSGLAPMLSILRGA 119 (232)
T ss_pred CCcEEEEeeCcCHHHHHHHHHHH
Confidence 45799999999998877655543
No 133
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=21.76 E-value=97 Score=30.92 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=23.7
Q ss_pred CeEEEEeCCccchH-----HHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNG-----VVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~-----llrgLk~~~~~lTaI 88 (468)
+||.++.||+|..- |+++|++.+++++.+
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv 34 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWL 34 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEE
Confidence 48999999998765 677888888887777
No 134
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.72 E-value=3.1e+02 Score=27.88 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=44.8
Q ss_pred CCCHHHHHHHhcC---------CEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012211 305 TANSAVLDQLNAV---------DCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAI 375 (468)
Q Consensus 305 ~~~p~ai~AI~~A---------DlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl~~~gET~g~s~~d~v~al 375 (468)
.+.++.++||+.+ |+||++=|-==..=+-.+-=..|++||.+++-|+| +=+++. ..+|+.|+|.-.
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvi--saIGHe---~D~ti~D~vAd~ 129 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVI--SAIGHE---TDFTIADFVADL 129 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEE--EecCCC---CCchHHHHHHHh
Confidence 4567778888765 78888665322222334556789999999987754 556544 345899998865
No 135
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=21.65 E-value=1.1e+02 Score=32.53 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=38.2
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC---CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHH
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRS 115 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~---~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn 115 (468)
...+++++|.|.....+++.|++-. .++.+++ ||..+.+ +...|.|..|++++
T Consensus 124 ~~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~i---dd~~~~~--~~i~g~pVlg~~~~ 179 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAALSRNPDLGYRVVGFV---DDRPSDR--VEVAGLPVLGKLDD 179 (445)
T ss_pred CCCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEE---eCCcccc--cccCCCcccCCHHH
Confidence 4467999999999999999998643 3444444 5544443 45678888888875
No 136
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.58 E-value=1.1e+02 Score=26.59 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=23.5
Q ss_pred CccEEEEecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCch
Q 012211 284 RIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLF 328 (468)
Q Consensus 284 ~I~rV~l~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSly 328 (468)
.++.+|+.+. ..+++++++.+++++-++||+++.
T Consensus 79 g~~~v~~~~g-----------~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 79 GVKAVWLQPG-----------AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp T-SEEEE-TT-----------S--HHHHHHHHHTT-EEEESS-HH
T ss_pred CCCEEEEEcc-----------hHHHHHHHHHHHcCCEEEeCCcce
Confidence 5789998754 457899999999999999998864
No 137
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=21.52 E-value=73 Score=28.89 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=26.6
Q ss_pred CHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcC
Q 012211 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSR 347 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s 347 (468)
.+++.+.|++||+|.++-|+.+- ++-.|-=.++.++|++.
T Consensus 26 ~~~~~~~i~~ad~I~~~GG~~~~-l~~~l~~t~l~~~i~~~ 65 (154)
T PF03575_consen 26 DADILEAIREADAIFLGGGDTFR-LLRQLKETGLDEAIREA 65 (154)
T ss_dssp HHHHHHHHHHSSEEEE--S-HHH-HHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECCCCHHH-HHHHHHhCCHHHHHHHH
Confidence 45899999999999999999864 23344445666677653
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=21.48 E-value=92 Score=32.34 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=25.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~ 31 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVL 31 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999988775544
No 139
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=21.25 E-value=76 Score=30.08 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.=++.+
T Consensus 103 ~~~~vlIagG~Giap~~~~l~~~ 125 (231)
T cd06215 103 ADKLLLLSAGSGITPMMSMARWL 125 (231)
T ss_pred CCcEEEEecCcCcchHHHHHHHH
Confidence 46899999999999666555443
No 140
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.23 E-value=2.2e+02 Score=28.98 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=41.9
Q ss_pred ccccchhhhh---hhhccccCCCCCCCCeEEEEeC--CccchHHHHHHHc--CCCCeEEEEeCCCCCcchHHHHHHcCCC
Q 012211 36 RKSLTKSMSA---ATHCRCFSNPTHTQPSLLVFSG--GTAFNGVVEELKN--ITTRVAHVLPVSDDGGSTAEIVRVLGGP 108 (468)
Q Consensus 36 ~~~~~~~~~~---~~~~~~~~~~~~~~pkIVv~gG--GTGl~~llrgLk~--~~~~lTaIVtv~DdGGSSG~LR~~~g~~ 108 (468)
...|+..|.+ +.+...--+.+.+.+||+||+= ||-+..|+...+. +..++.+|++--++- +.+-+++|+|
T Consensus 63 ~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~---~~lA~~~gIp 139 (286)
T PRK06027 63 LETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDL---RSLVERFGIP 139 (286)
T ss_pred HHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhH---HHHHHHhCCC
Confidence 4445544433 2233333344556779988854 4556677777765 356788888765543 3456777776
Q ss_pred C
Q 012211 109 A 109 (468)
Q Consensus 109 ~ 109 (468)
.
T Consensus 140 ~ 140 (286)
T PRK06027 140 F 140 (286)
T ss_pred E
Confidence 4
No 141
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=21.13 E-value=90 Score=37.48 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=27.3
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+..+.+|+|+|||-|.-..+.-|++.+.++|.+
T Consensus 534 ~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~ 566 (1012)
T TIGR03315 534 KSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVF 566 (1012)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 345679999999999999999999988876544
No 142
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=21.13 E-value=75 Score=30.49 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=18.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++++|+||+|+.-++.=++.+
T Consensus 125 ~~~illIagG~GItP~~sil~~l 147 (220)
T cd06197 125 ERKMVWIAGGVGITPFLAMLRAI 147 (220)
T ss_pred CceEEEEecccchhhHHHHHHHH
Confidence 45799999999998877655543
No 143
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.13 E-value=1e+02 Score=34.72 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTa 87 (468)
+..+.+|+|+|||-+.-..+..|++.+.+++.
T Consensus 324 ~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V 355 (654)
T PRK12769 324 TKSDKRVAIIGAGPAGLACADVLARNGVAVTV 355 (654)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 35678999999999999999999998877443
No 144
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=21.12 E-value=93 Score=30.78 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.9
Q ss_pred CeEEEEeCCccchHHHHHHHcC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~ 81 (468)
.+|++++||||.+-+..=++++
T Consensus 108 ~~vlliagGtG~aPl~~i~~~~ 129 (252)
T COG0543 108 KPVLLIAGGTGIAPLYAIAKEL 129 (252)
T ss_pred CcEEEEecccCHhHHHHHHHHH
Confidence 3499999999998887766655
No 145
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=20.99 E-value=74 Score=31.44 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHhcCCEEEEcCCCchh--------hhcccccchhHHHHHhcCCCCEEEEeCCCCC
Q 012211 310 VLDQLNAVDCIIYAMGSLFT--------SICPSLVLLGIGEIISSRSCPKVLLLNGLED 360 (468)
Q Consensus 310 ai~AI~~ADlIvlGPGSlyT--------SIiPnLlv~GI~eAI~~s~a~kV~I~Nl~~~ 360 (468)
.-+++++||+||+.-|..-. -.-=.-++..+.++|++. ||...+.|.+.|
T Consensus 64 ~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~tNP 121 (263)
T cd00650 64 PYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVSNP 121 (263)
T ss_pred hHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 36778999999995554322 111122467778888776 366666666554
No 146
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=20.80 E-value=1.1e+02 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=27.0
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTa 87 (468)
.+..+.+|+|+|||.+.-..+.-|++.+.+++.
T Consensus 137 ~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i 169 (467)
T TIGR01318 137 VVPTGKRVAVIGAGPAGLACADILARAGVQVVV 169 (467)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 345678999999999999999999988777543
No 147
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=20.71 E-value=92 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++|+|+||||+.-++.=+++.
T Consensus 108 ~~~~~vlIAgGtGIaP~~s~l~~~ 131 (245)
T cd06200 108 DGRPLILIGNGTGLAGLRSHLRAR 131 (245)
T ss_pred CCCCEEEEecCcChHHHHHHHHHH
Confidence 346799999999999887766544
No 148
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.70 E-value=86 Score=32.55 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.4
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..|+|+|||-+...+..+|.+.+.+++.|
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi 31 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLL 31 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999887665444
No 149
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=20.68 E-value=98 Score=30.83 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=18.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.=+++.
T Consensus 115 ~~~~vlIAgGtGIaP~~s~l~~~ 137 (267)
T cd06182 115 TTPIIMVGPGTGIAPFRGFLQER 137 (267)
T ss_pred CCCEEEEecCccHHHHHHHHHHH
Confidence 56899999999999888766543
No 150
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=20.59 E-value=67 Score=30.30 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.1
Q ss_pred CeEEEEeCCccchHHHHHHHcC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~ 81 (468)
.++|+|+||||+.-++.-++..
T Consensus 100 ~~~vlia~GtGiaP~~s~l~~~ 121 (218)
T cd06196 100 GPGVFIAGGAGITPFIAILRDL 121 (218)
T ss_pred CceEEEecCCCcChHHHHHHHH
Confidence 4799999999999887766654
No 151
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=20.14 E-value=85 Score=32.06 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=18.8
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++++|+||||+.-++.=|+++
T Consensus 203 ~~~~ivlIagGtGiaP~~s~l~~~ 226 (339)
T PRK07609 203 SDKPIVLLASGTGFAPIKSIVEHL 226 (339)
T ss_pred CCCCEEEEecCcChhHHHHHHHHH
Confidence 345799999999999887766554
No 152
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.12 E-value=89 Score=32.27 Aligned_cols=28 Identities=4% Similarity=-0.037 Sum_probs=24.5
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+|+|+|||-+...+..+|++.+.+++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~ 30 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIF 30 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEe
Confidence 6999999999999999999988776554
No 153
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.06 E-value=91 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.8
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.|+|+|||-+...+...|++.+.+++.|
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vi 29 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLL 29 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 5899999999999999999887765544
Done!