Query 012211
Match_columns 468
No_of_seqs 167 out of 938
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o2z_A Hypothetical protein; s 100.0 2.4E-85 8.1E-90 661.8 27.4 316 57-456 2-319 (323)
2 2ppv_A Uncharacterized protein 100.0 2.4E-84 8E-89 655.7 30.3 315 58-457 3-321 (332)
3 2q7x_A UPF0052 protein SP_1565 100.0 4.9E-85 1.7E-89 661.9 22.8 316 58-454 3-324 (326)
4 2p0y_A Hypothetical protein LP 100.0 3.5E-85 1.2E-89 665.8 20.3 318 57-455 8-329 (341)
5 3c3d_A 2-phospho-L-lactate tra 100.0 2.4E-69 8.2E-74 542.8 15.9 282 62-457 1-308 (311)
6 4g6h_A Rotenone-insensitive NA 75.4 1.3 4.4E-05 46.5 2.7 33 56-88 39-71 (502)
7 3s2u_A UDP-N-acetylglucosamine 69.6 3.8 0.00013 40.7 4.5 31 58-88 1-36 (365)
8 3vrd_B FCCB subunit, flavocyto 65.1 3.7 0.00013 40.8 3.3 27 59-85 2-28 (401)
9 4eqs_A Coenzyme A disulfide re 64.2 3.7 0.00013 42.0 3.2 26 60-85 1-26 (437)
10 3klj_A NAD(FAD)-dependent dehy 62.5 4.4 0.00015 40.8 3.3 33 56-88 6-38 (385)
11 3hyw_A Sulfide-quinone reducta 54.0 7.4 0.00025 39.4 3.3 27 58-84 1-27 (430)
12 4hb9_A Similarities with proba 46.7 11 0.00039 36.6 3.2 30 59-88 1-30 (412)
13 3kkj_A Amine oxidase, flavin-c 45.5 16 0.00053 31.7 3.6 30 59-88 2-31 (336)
14 3fbs_A Oxidoreductase; structu 43.8 15 0.0005 34.0 3.3 29 60-88 3-31 (297)
15 3itj_A Thioredoxin reductase 1 43.5 12 0.00041 35.4 2.7 31 58-88 21-51 (338)
16 1mo9_A ORF3; nucleotide bindin 43.0 17 0.00058 37.8 4.1 39 54-93 38-76 (523)
17 3fwz_A Inner membrane protein 42.3 26 0.00088 29.5 4.4 36 55-90 3-38 (140)
18 1id1_A Putative potassium chan 41.5 21 0.0007 30.4 3.7 33 58-90 2-34 (153)
19 3r9u_A Thioredoxin reductase; 41.4 21 0.00071 33.3 4.0 33 59-91 4-36 (315)
20 3f8d_A Thioredoxin reductase ( 40.7 17 0.00059 33.9 3.4 30 59-88 15-44 (323)
21 3lwz_A 3-dehydroquinate dehydr 38.0 24 0.00081 31.7 3.5 42 309-357 62-110 (153)
22 3ihm_A Styrene monooxygenase A 38.0 15 0.00051 37.2 2.6 34 56-89 19-52 (430)
23 3ef6_A Toluene 1,2-dioxygenase 37.8 20 0.0007 35.8 3.6 26 59-84 2-27 (410)
24 2gag_B Heterotetrameric sarcos 37.4 22 0.00074 34.7 3.6 42 58-99 20-63 (405)
25 3da8_A Probable 5'-phosphoribo 37.3 18 0.00063 33.9 2.9 52 55-108 8-62 (215)
26 3n8k_A 3-dehydroquinate dehydr 37.0 33 0.0011 31.3 4.3 37 314-357 92-131 (172)
27 3dfz_A SIRC, precorrin-2 dehyd 37.0 25 0.00084 33.1 3.7 34 57-90 29-62 (223)
28 3fg2_P Putative rubredoxin red 36.8 22 0.00076 35.4 3.6 26 59-84 1-26 (404)
29 3tqr_A Phosphoribosylglycinami 36.5 32 0.0011 32.2 4.4 50 59-109 5-57 (215)
30 3kip_A 3-dehydroquinase, type 35.4 39 0.0013 30.7 4.5 58 315-379 82-156 (167)
31 3hgm_A Universal stress protei 35.3 49 0.0017 27.1 5.0 46 307-354 99-147 (147)
32 3lyu_A Putative hydrogenase; t 35.2 19 0.00066 30.9 2.5 23 59-81 18-40 (142)
33 2vdc_G Glutamate synthase [NAD 35.0 28 0.00096 35.8 4.1 31 56-86 119-149 (456)
34 3lrx_A Putative hydrogenase; a 34.9 22 0.00076 31.0 2.9 31 58-88 22-55 (158)
35 3h28_A Sulfide-quinone reducta 34.8 21 0.00073 35.8 3.1 30 59-88 2-33 (430)
36 3alj_A 2-methyl-3-hydroxypyrid 34.8 22 0.00076 34.8 3.2 30 59-88 11-40 (379)
37 1kyq_A Met8P, siroheme biosynt 34.3 22 0.00074 34.6 2.9 36 57-92 11-46 (274)
38 1lss_A TRK system potassium up 34.3 26 0.00087 28.6 3.0 30 59-88 4-33 (140)
39 1ryi_A Glycine oxidase; flavop 34.2 27 0.00094 33.7 3.7 41 59-99 17-57 (382)
40 3ics_A Coenzyme A-disulfide re 34.0 21 0.00072 37.5 3.0 27 56-82 33-59 (588)
41 2bw0_A 10-FTHFDH, 10-formyltet 33.8 45 0.0015 33.1 5.2 35 59-94 22-57 (329)
42 2gpj_A Siderophore-interacting 33.7 35 0.0012 31.9 4.3 31 59-89 112-144 (252)
43 3vot_A L-amino acid ligase, BL 33.6 39 0.0013 33.8 4.9 38 57-94 3-40 (425)
44 2ywl_A Thioredoxin reductase r 33.5 29 0.00099 29.9 3.4 29 61-89 3-31 (180)
45 1yvv_A Amine oxidase, flavin-c 33.2 29 0.00098 32.8 3.6 29 60-88 3-31 (336)
46 2e4g_A Tryptophan halogenase; 33.1 27 0.00093 36.5 3.7 30 59-88 25-57 (550)
47 3lxd_A FAD-dependent pyridine 33.0 23 0.00078 35.3 3.0 27 58-84 8-34 (415)
48 3h8l_A NADH oxidase; membrane 32.9 21 0.00073 35.4 2.7 29 60-88 2-33 (409)
49 1xhc_A NADH oxidase /nitrite r 32.4 23 0.00077 35.1 2.8 27 56-82 5-31 (367)
50 3nix_A Flavoprotein/dehydrogen 32.4 28 0.00097 34.2 3.5 29 60-88 6-34 (421)
51 3a1f_A Cytochrome B-245 heavy 32.0 21 0.00071 31.0 2.2 24 58-81 16-39 (186)
52 3rp8_A Flavoprotein monooxygen 32.0 26 0.00089 34.6 3.2 30 59-88 23-52 (407)
53 3sx6_A Sulfide-quinone reducta 32.0 27 0.00093 35.1 3.4 29 60-88 5-36 (437)
54 2weu_A Tryptophan 5-halogenase 31.7 22 0.00074 36.6 2.6 29 60-88 3-34 (511)
55 3oc4_A Oxidoreductase, pyridin 31.7 22 0.00074 36.1 2.6 27 60-86 3-31 (452)
56 4a9w_A Monooxygenase; baeyer-v 31.7 30 0.001 32.6 3.5 29 60-88 4-32 (357)
57 2a87_A TRXR, TR, thioredoxin r 31.5 28 0.00095 33.3 3.2 32 57-88 12-43 (335)
58 1y56_B Sarcosine oxidase; dehy 30.8 38 0.0013 32.8 4.1 40 59-99 5-45 (382)
59 3lzw_A Ferredoxin--NADP reduct 30.6 32 0.0011 32.2 3.4 29 60-88 8-36 (332)
60 1o94_A Tmadh, trimethylamine d 30.1 33 0.0011 37.5 3.8 56 56-114 386-441 (729)
61 1ps9_A 2,4-dienoyl-COA reducta 29.9 34 0.0012 36.8 3.9 30 57-86 371-400 (671)
62 3d1c_A Flavin-containing putat 29.8 33 0.0011 32.9 3.4 27 60-86 5-32 (369)
63 3fdx_A Putative filament prote 29.7 71 0.0024 26.0 5.1 46 306-354 94-142 (143)
64 1trb_A Thioredoxin reductase; 29.5 22 0.00077 33.3 2.1 30 59-88 5-34 (320)
65 1uqr_A 3-dehydroquinate dehydr 29.3 45 0.0016 29.8 3.9 42 309-357 56-104 (154)
66 3dlo_A Universal stress protei 29.2 47 0.0016 28.2 4.0 47 306-354 105-154 (155)
67 1k0i_A P-hydroxybenzoate hydro 28.9 30 0.001 33.8 3.0 29 60-88 3-31 (394)
68 3cgv_A Geranylgeranyl reductas 28.6 35 0.0012 33.0 3.4 29 60-88 5-33 (397)
69 2gf3_A MSOX, monomeric sarcosi 28.6 36 0.0012 32.9 3.5 30 59-88 3-32 (389)
70 3ps9_A TRNA 5-methylaminomethy 28.4 43 0.0015 35.9 4.4 35 55-89 268-302 (676)
71 2uyg_A 3-dehydroquinate dehydr 28.0 39 0.0013 30.1 3.2 42 309-357 54-103 (149)
72 2bc0_A NADH oxidase; flavoprot 27.9 30 0.001 35.5 2.9 25 58-82 34-58 (490)
73 1qfj_A Protein (flavin reducta 27.7 29 0.001 31.5 2.5 34 59-92 102-140 (232)
74 3jxp_A Coenzyme PQQ synthesis 27.7 1.7E+02 0.0059 28.4 8.3 65 286-360 194-275 (321)
75 2c4w_A 3-dehydroquinate dehydr 27.4 41 0.0014 30.8 3.3 39 312-357 73-115 (176)
76 2vou_A 2,6-dihydroxypyridine h 27.4 40 0.0014 33.2 3.6 30 59-88 5-34 (397)
77 2g1u_A Hypothetical protein TM 27.3 42 0.0014 28.5 3.3 31 58-88 18-48 (155)
78 1mjh_A Protein (ATP-binding do 27.3 97 0.0033 25.8 5.7 48 307-356 109-159 (162)
79 2zbw_A Thioredoxin reductase; 27.3 39 0.0013 31.9 3.4 29 60-88 6-34 (335)
80 2q7v_A Thioredoxin reductase; 27.1 35 0.0012 32.3 3.0 30 59-88 8-37 (325)
81 2eix_A NADH-cytochrome B5 redu 27.1 30 0.001 31.7 2.5 23 59-81 116-138 (243)
82 2gm3_A Unknown protein; AT3G01 27.0 84 0.0029 26.8 5.3 49 307-357 113-164 (175)
83 2aqj_A Tryptophan halogenase, 26.7 35 0.0012 35.4 3.2 30 60-89 6-38 (538)
84 2gqw_A Ferredoxin reductase; f 26.7 37 0.0012 34.0 3.2 27 58-84 6-32 (408)
85 1fdr_A Flavodoxin reductase; f 26.7 34 0.0012 31.3 2.8 23 59-81 106-128 (248)
86 1gqo_A Dehydroquinase; dehydra 26.4 52 0.0018 29.1 3.7 39 312-357 62-103 (143)
87 1h05_A 3-dehydroquinate dehydr 26.4 52 0.0018 29.2 3.7 39 312-357 64-105 (146)
88 1ges_A Glutathione reductase; 26.2 41 0.0014 34.1 3.5 36 60-96 5-40 (450)
89 2ywr_A Phosphoribosylglycinami 26.1 44 0.0015 31.0 3.4 49 60-109 2-54 (216)
90 2xdo_A TETX2 protein; tetracyc 26.0 41 0.0014 33.1 3.4 31 59-89 26-56 (398)
91 1meo_A Phosophoribosylglycinam 26.0 94 0.0032 28.7 5.7 49 60-109 1-53 (209)
92 3tnj_A Universal stress protei 26.0 73 0.0025 26.2 4.5 47 307-356 98-147 (150)
93 3o0h_A Glutathione reductase; 26.0 42 0.0014 34.3 3.6 31 60-90 27-57 (484)
94 1nhp_A NADH peroxidase; oxidor 25.8 31 0.0011 34.8 2.5 27 60-86 1-29 (447)
95 3dme_A Conserved exported prot 25.7 43 0.0015 31.8 3.4 29 60-88 5-33 (369)
96 1zk7_A HGII, reductase, mercur 25.7 42 0.0014 34.0 3.5 30 59-88 4-33 (467)
97 2qae_A Lipoamide, dihydrolipoy 25.6 40 0.0014 34.1 3.3 29 60-88 3-31 (468)
98 3ic5_A Putative saccharopine d 25.4 39 0.0013 26.5 2.6 29 58-86 4-33 (118)
99 3k30_A Histamine dehydrogenase 25.4 44 0.0015 36.1 3.8 31 57-87 389-419 (690)
100 2b9w_A Putative aminooxidase; 25.3 52 0.0018 32.4 4.0 31 58-88 5-36 (424)
101 2r9z_A Glutathione amide reduc 25.3 41 0.0014 34.2 3.3 37 59-96 4-40 (463)
102 1onf_A GR, grase, glutathione 25.3 40 0.0014 34.7 3.3 36 60-96 3-38 (500)
103 2x3n_A Probable FAD-dependent 25.3 43 0.0015 32.8 3.4 29 60-88 7-35 (399)
104 1tvc_A Methane monooxygenase c 25.2 37 0.0013 31.3 2.7 34 59-92 117-155 (250)
105 3c6k_A Spermine synthase; sper 25.1 87 0.003 31.9 5.7 23 59-83 206-228 (381)
106 3tqq_A Methionyl-tRNA formyltr 25.0 1E+02 0.0036 30.2 6.1 38 58-95 1-38 (314)
107 3llv_A Exopolyphosphatase-rela 25.0 55 0.0019 27.1 3.6 31 59-89 6-36 (141)
108 2xve_A Flavin-containing monoo 24.9 45 0.0015 34.0 3.6 25 60-84 3-30 (464)
109 1vdc_A NTR, NADPH dependent th 24.8 45 0.0015 31.5 3.3 29 60-88 9-37 (333)
110 3u80_A 3-dehydroquinate dehydr 24.8 70 0.0024 28.6 4.2 37 314-357 68-110 (151)
111 3mcu_A Dipicolinate synthase, 24.8 66 0.0022 29.9 4.3 33 59-91 5-42 (207)
112 2pyx_A Tryptophan halogenase; 24.7 37 0.0013 35.2 2.9 21 60-80 8-28 (526)
113 2cul_A Glucose-inhibited divis 24.7 53 0.0018 29.9 3.7 31 60-90 4-34 (232)
114 2z08_A Universal stress protei 24.7 1.2E+02 0.004 24.6 5.6 47 306-354 87-136 (137)
115 2hqm_A GR, grase, glutathione 24.6 44 0.0015 34.1 3.4 30 59-88 11-40 (479)
116 3nrn_A Uncharacterized protein 24.6 40 0.0014 33.4 3.0 27 60-86 1-27 (421)
117 1gtz_A 3-dehydroquinate dehydr 24.6 67 0.0023 28.8 4.1 39 312-357 68-110 (156)
118 4gud_A Imidazole glycerol phos 24.5 47 0.0016 29.9 3.2 44 313-357 37-81 (211)
119 3e1t_A Halogenase; flavoprotei 24.5 45 0.0015 34.4 3.5 29 60-88 8-36 (512)
120 1dxl_A Dihydrolipoamide dehydr 24.5 45 0.0015 33.7 3.5 30 59-88 6-35 (470)
121 3iwa_A FAD-dependent pyridine 24.5 38 0.0013 34.4 2.9 28 60-87 4-33 (472)
122 3k7m_X 6-hydroxy-L-nicotine ox 24.3 45 0.0015 32.9 3.3 28 61-88 3-30 (431)
123 1fl2_A Alkyl hydroperoxide red 24.1 51 0.0017 30.7 3.5 29 60-88 2-30 (310)
124 3g3e_A D-amino-acid oxidase; F 24.0 36 0.0012 32.7 2.5 23 60-82 1-23 (351)
125 4eh1_A Flavohemoprotein; struc 24.0 39 0.0013 30.8 2.6 24 58-81 113-136 (243)
126 3nks_A Protoporphyrinogen oxid 23.9 45 0.0015 33.4 3.2 30 59-88 2-33 (477)
127 3cty_A Thioredoxin reductase; 23.8 50 0.0017 31.1 3.4 29 60-88 17-45 (319)
128 3v76_A Flavoprotein; structura 23.8 48 0.0016 33.6 3.5 30 59-88 27-56 (417)
129 2eq6_A Pyruvate dehydrogenase 23.6 47 0.0016 33.7 3.4 29 60-88 7-35 (464)
130 1q1r_A Putidaredoxin reductase 23.6 46 0.0016 33.5 3.3 26 59-84 4-29 (431)
131 3l4e_A Uncharacterized peptida 23.3 44 0.0015 30.8 2.8 39 308-347 71-109 (206)
132 3idf_A USP-like protein; unive 23.2 91 0.0031 25.2 4.6 45 307-354 92-137 (138)
133 2hmt_A YUAA protein; RCK, KTN, 23.2 61 0.0021 26.3 3.5 30 59-88 6-35 (144)
134 3ka7_A Oxidoreductase; structu 23.1 44 0.0015 32.8 3.0 29 60-88 1-29 (425)
135 3kd9_A Coenzyme A disulfide re 22.9 42 0.0014 33.8 2.8 25 59-83 3-27 (449)
136 3i3l_A Alkylhalidase CMLS; fla 22.9 47 0.0016 35.4 3.3 30 59-88 23-52 (591)
137 2dum_A Hypothetical protein PH 22.8 1.2E+02 0.0042 25.5 5.5 49 307-357 106-157 (170)
138 1ebd_A E3BD, dihydrolipoamide 22.8 48 0.0017 33.4 3.3 29 60-88 4-32 (455)
139 1zmd_A Dihydrolipoyl dehydroge 22.6 51 0.0017 33.4 3.4 29 60-88 7-35 (474)
140 2v3a_A Rubredoxin reductase; a 22.5 66 0.0023 31.5 4.1 37 60-96 5-41 (384)
141 3c96_A Flavin-containing monoo 22.3 57 0.002 32.2 3.7 30 60-89 5-35 (410)
142 3c4a_A Probable tryptophan hyd 22.1 41 0.0014 32.9 2.5 29 60-88 1-31 (381)
143 2gv8_A Monooxygenase; FMO, FAD 22.0 54 0.0018 33.0 3.4 25 59-83 6-30 (447)
144 3l4b_C TRKA K+ channel protien 21.8 52 0.0018 29.6 3.0 30 60-89 1-30 (218)
145 3svl_A Protein YIEF; E. coli C 21.8 1.3E+02 0.0043 27.0 5.6 74 307-383 63-141 (193)
146 3urh_A Dihydrolipoyl dehydroge 21.6 55 0.0019 33.4 3.5 28 60-87 26-53 (491)
147 2cdu_A NADPH oxidase; flavoenz 21.6 43 0.0015 33.8 2.6 27 60-86 1-29 (452)
148 2ivd_A PPO, PPOX, protoporphyr 21.6 57 0.0019 32.7 3.5 32 57-88 14-45 (478)
149 2q0l_A TRXR, thioredoxin reduc 21.5 58 0.002 30.3 3.4 28 61-88 3-31 (311)
150 3dje_A Fructosyl amine: oxygen 21.4 64 0.0022 32.0 3.8 31 59-89 6-37 (438)
151 2cnd_A NADH-dependent nitrate 21.4 40 0.0014 31.3 2.2 24 58-81 135-158 (270)
152 1q77_A Hypothetical protein AQ 21.4 84 0.0029 25.4 4.0 37 307-354 98-137 (138)
153 3fvw_A Putative NAD(P)H-depend 21.3 1.6E+02 0.0055 26.1 6.2 72 307-383 58-142 (192)
154 1ojt_A Surface protein; redox- 21.1 57 0.0019 33.3 3.4 29 60-88 7-35 (482)
155 1umk_A B5R, NADH-cytochrome B5 21.0 39 0.0013 31.5 2.0 23 59-81 146-168 (275)
156 3s3t_A Nucleotide-binding prot 20.8 1.2E+02 0.0042 24.5 5.0 46 307-354 96-145 (146)
157 3cwc_A Putative glycerate kina 20.8 58 0.002 33.3 3.3 46 312-357 283-328 (383)
158 3q2o_A Phosphoribosylaminoimid 20.8 91 0.0031 30.8 4.8 33 56-88 11-43 (389)
159 3pvc_A TRNA 5-methylaminomethy 20.7 76 0.0026 34.2 4.4 31 59-89 264-294 (689)
160 3auf_A Glycinamide ribonucleot 20.6 67 0.0023 30.2 3.5 49 60-109 23-75 (229)
161 1lvl_A Dihydrolipoamide dehydr 20.6 50 0.0017 33.5 2.8 29 60-88 6-34 (458)
162 3oz2_A Digeranylgeranylglycero 20.6 60 0.002 31.0 3.3 28 61-88 6-33 (397)
163 1yc5_A NAD-dependent deacetyla 20.5 1.8E+02 0.006 27.3 6.5 64 308-380 172-244 (246)
164 2a8x_A Dihydrolipoyl dehydroge 20.5 60 0.0021 32.8 3.4 29 60-88 4-32 (464)
165 2bry_A NEDD9 interacting prote 20.5 64 0.0022 33.3 3.7 33 56-88 89-121 (497)
166 2yqu_A 2-oxoglutarate dehydrog 20.4 60 0.0021 32.7 3.4 29 60-88 2-30 (455)
167 3lqk_A Dipicolinate synthase s 20.4 67 0.0023 29.7 3.4 43 306-348 138-188 (201)
168 4fk8_A Ferredoxin--NADP reduct 20.3 47 0.0016 31.0 2.4 24 58-81 121-144 (271)
169 4a5l_A Thioredoxin reductase; 20.1 59 0.002 30.3 3.1 32 58-89 151-182 (314)
170 1cjc_A Protein (adrenodoxin re 20.1 50 0.0017 33.8 2.8 26 57-82 4-29 (460)
171 3ab1_A Ferredoxin--NADP reduct 20.1 65 0.0022 30.9 3.4 30 59-88 14-43 (360)
No 1
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=100.00 E-value=2.4e-85 Score=661.85 Aligned_cols=316 Identities=26% Similarity=0.380 Sum_probs=281.6
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhc
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLG 136 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~ 136 (468)
.++||||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||+|||+.++ .+.+||+
T Consensus 2 ~~~~kiv~lgGGtGl~~ll~gL~~~~~~iT~IVtv~DdGgssG~LR~~~~~~~pGDir~~l~aLa~~~~----~~~~L~~ 77 (323)
T 2o2z_A 2 MKKKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQ 77 (323)
T ss_dssp CCCEEEEEEECSHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHHTSCCCHHHHHHHHHHCCCCH----HHHHHHH
T ss_pred CCCCeEEEECCcccHHHHHHHHHhcCCCeEEEEECCcCCccchhhHhhcCCCCCchHHHHHHHhCCCcH----HHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999864 6899999
Q ss_pred CcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHH
Q 012211 137 HRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAA 216 (468)
Q Consensus 137 ~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~A 216 (468)
|||+. ++||+|||+|||||+|+++++|+|.+|
T Consensus 78 ~Rf~~------------------------------------------------~~dlagh~~GNl~L~al~~~~g~~~~a 109 (323)
T 2o2z_A 78 HRFEN------------------------------------------------GNGLSGHSLGNLLLAGMTSITGDFARG 109 (323)
T ss_dssp CBCCC------------------------------------------------C-CCTTCBHHHHHHHHHHHHHTCHHHH
T ss_pred hCCCC------------------------------------------------CCccccCcHHHHHHHHHHHccCCHHHH
Confidence 99974 468999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCC
Q 012211 217 IFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGS 296 (468)
Q Consensus 217 I~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~ 296 (468)
|+.+|++|+|+ ++|+|| |+++++|+|+++||++++||++|+++ ..+|++|||.+.
T Consensus 110 i~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~ge~~I~~~------------------~~~i~~v~~~p~--- 164 (323)
T 2o2z_A 110 ISEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK--- 164 (323)
T ss_dssp HHHHHHHTTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTGGGG------------------CSCEEEEEEEST---
T ss_pred HHHHHHHhCCC--CEEEcC--CCCceEEEEEECCCCEEEEeEcccCC------------------CCCceEEEEeCC---
Confidence 99999999998 899999 89999999999999999999999874 479999999864
Q ss_pred CCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHH
Q 012211 297 NLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAI 375 (468)
Q Consensus 297 ~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al 375 (468)
.|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++||++++
T Consensus 165 ------~~~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl~tq~GET~g~s~~dhv~ai 238 (323)
T 2o2z_A 165 ------DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAI 238 (323)
T ss_dssp ------TCCCCHHHHHHHHHCSEEEECSSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCCCCC-CCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHHHhh
Q 012211 376 TDALNRAYGDPQKSL-KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGR 454 (468)
Q Consensus 376 ~~~lg~~~~~~~~~~-~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l~~~ 454 (468)
.+|++....|.++.+ ...+++++++|..+...++.+|.+.++++|+++ +..+.++.++...+||+++||++|++++.+
T Consensus 239 ~~~~~~~~iD~vlv~~~~~~~~~~~~Y~~~~~~pv~~d~~~l~~~G~~v-i~~~l~~~~~~~~rhD~~~La~al~~l~~~ 317 (323)
T 2o2z_A 239 MDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGT-ISDYFVLEQDDVLRHNASKVSEAILEGKPR 317 (323)
T ss_dssp HHHHCSSSCSEEEEECSCCCHHHHHHHHTTTCCBCCCCHHHHHHTTCEE-EEECCEEEC--CEEECHHHHHHHHHC----
T ss_pred HHhcCCCCCcEEEECCCcCCHHHHHHHHhcCCCccccCHHHHHhCCCEE-EEecccccCCCCCccCHHHHHHHHHHHHhh
Confidence 999998777766543 456777788764334446788999999999994 578877665467899999999999999876
Q ss_pred hc
Q 012211 455 HM 456 (468)
Q Consensus 455 ~~ 456 (468)
..
T Consensus 318 ~~ 319 (323)
T 2o2z_A 318 TS 319 (323)
T ss_dssp --
T ss_pred cc
Confidence 54
No 2
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=100.00 E-value=2.4e-84 Score=655.68 Aligned_cols=315 Identities=25% Similarity=0.366 Sum_probs=286.8
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGH 137 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~~ 137 (468)
++||||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||+|||+.++ .+.+||+|
T Consensus 3 ~~~kIv~lgGGtGl~~ll~gLk~~~~~iTaIVtv~DDGGSsG~LR~~~g~~~pGDiR~~l~aLa~~~~----~~~~L~~~ 78 (332)
T 2ppv_A 3 KQMNVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRDVMDIPAPGDIRNVIAALSDSES----ILTQLFQY 78 (332)
T ss_dssp CCEEEEEEECHHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHSCCCCCHHHHHHHHHTSCTTS----HHHHHHTC
T ss_pred CCCeEEEEcCcccHHHHHHHHHhCCCCeEEEEECCcCCccchhHHHhcCCCCCchHHHHHHHhCCCcH----HHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999876 68999999
Q ss_pred cCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHHH
Q 012211 138 RLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAI 217 (468)
Q Consensus 138 Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~AI 217 (468)
||+. . ||+|||+|||||+|+++++|+|.+||
T Consensus 79 Rf~~------------------------------------------------g-dlagH~~GNl~L~al~~~~g~~~~ai 109 (332)
T 2ppv_A 79 RFGE------------------------------------------------N-QVDGHSLGNLVIAGMTNITNDFGHAI 109 (332)
T ss_dssp BCCT------------------------------------------------T-SGGGCBHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCC------------------------------------------------C-ccccccHHHHHHHHHHHhcCCHHHHH
Confidence 9973 2 69999999999999999999999999
Q ss_pred HHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCCC
Q 012211 218 FLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSN 297 (468)
Q Consensus 218 ~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~ 297 (468)
+.+|++|+|+ ++|+|| |+++++|+|+++||++++||++|++. +++|++|||.+.
T Consensus 110 ~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~Ge~~I~~~------------------~~~i~~v~l~p~---- 163 (332)
T 2ppv_A 110 KELSKVLNIK--GQVIPS--TNASVQLNAVMEDGEIVHGETNIPKT------------------HKKIDRVFLEPS---- 163 (332)
T ss_dssp HHHHHHTTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTSSSS------------------CSCEEEEEEESC----
T ss_pred HHHHHHhCCC--CEEECC--CCCceEEEEEECCCCEEEEeeeccCC------------------CCCceEEEEeCC----
Confidence 9999999998 899999 89999999999999999999999873 679999999874
Q ss_pred CccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHHH
Q 012211 298 LLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAIT 376 (468)
Q Consensus 298 ~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al~ 376 (468)
+|+++|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++||++++.
T Consensus 164 -----~~~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~N~~~~~GEt~g~s~~dhv~ai~ 238 (332)
T 2ppv_A 164 -----DVEPMNEAIEALEQADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVMTQPGETDNYDVKEHIDALT 238 (332)
T ss_dssp -----CCCCCHHHHHHHHHCSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCSBCCTTTCTTCCHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHhcccCCCCCCC-CCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccc-eecCCC-CCccCHHHHHHHHHHHHh
Q 012211 377 DALNRAYGDPQKS-LKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHS-ICDPKV-GIIFDPKSLIQAIADLLG 453 (468)
Q Consensus 377 ~~lg~~~~~~~~~-~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~-l~~~~~-~~rhD~~~La~al~~l~~ 453 (468)
+|++....|.++. ....+++++.+|..+...++.+|.+.++++|+++ +..+. +...+. ..|||+++||++|++++.
T Consensus 239 ~~~~~~~~D~vlv~~~~~p~~~~~~y~~~g~~pv~~D~~~l~~~g~~v-i~~~l~~~~~~~~~~rHD~~~La~al~~l~~ 317 (332)
T 2ppv_A 239 RQVGEPFIDFVICSSESYSKDVLQRYEEKNSKPVAVHKEQLKDSGIRV-LTASNLVEISNEHYVRHNTKVLSKMIYELAL 317 (332)
T ss_dssp HHHSSCCCCEEECCCCCCCHHHHHHHHHTTCCBCCCCHHHHHHTTCEE-ECCTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEECCCcCCHHHHHHHHhcCCCccccCHHHHHhCCCEE-EEeeceeeccCCCCcccCHHHHHHHHHHHHH
Confidence 9999877676543 3456777888876555567889999999999994 56776 443334 689999999999999998
Q ss_pred hhcc
Q 012211 454 RHMK 457 (468)
Q Consensus 454 ~~~~ 457 (468)
+...
T Consensus 318 ~~~~ 321 (332)
T 2ppv_A 318 ELTS 321 (332)
T ss_dssp HHTS
T ss_pred HhCc
Confidence 7654
No 3
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=4.9e-85 Score=661.95 Aligned_cols=316 Identities=24% Similarity=0.335 Sum_probs=276.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHc-CCCCCCcHHHHHHHhcCCCChhHHHHHHHhc
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVL-GGPAVGDIRSRCLRLSDESTPEALAVRRLLG 136 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~-g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~ 136 (468)
++||||+||||||++++++|||+++.++|+||||+|||||||+||++| |++|||||||||+|||+.++ .+.+||+
T Consensus 3 ~~~~IV~igGGtGl~~ll~gLk~~~~~iTaIVtvaDDGGSsG~LR~~~~~i~~pGDiRn~L~aLa~~~~----~~~~L~~ 78 (326)
T 2q7x_A 3 RXPXITVIGGGTGSPVILXSLREXDVEIAAIVTVADDGGSSGELRXNMQQLTPPGDLRNVLVAMSDMPX----FYEXVFQ 78 (326)
T ss_dssp CCCEEEEECCCTTHHHHHHHHHHSSCEEEEEECCBSCGGGGSSCTTTCC----CHHHHHHHHHTSSCHH----HHHHHTT
T ss_pred CCCeEEEEcCcccHHHHHHHhccCCCCeEEEEECccCCccceeehhhhcCCCCccHHHHHHHHhCCCch----HHHHHHH
Confidence 578999999999999999999999999999999999999999999999 99999999999999999853 7999999
Q ss_pred CcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHH
Q 012211 137 HRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAA 216 (468)
Q Consensus 137 ~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~A 216 (468)
|||+. | +.+|+|||+|||||+|+++++|+|.+|
T Consensus 79 yRf~~--------------~---------------------------------d~~lagHs~GNl~Laal~~~~G~~~~a 111 (326)
T 2q7x_A 79 YRFSE--------------D---------------------------------AGAFAGHPLGNLIIAGLSEMQGSTYNA 111 (326)
T ss_dssp CBCCC---------------------------------------------------CCSCBTTHHHHHHHHHHHSSHHHH
T ss_pred cCCCC--------------C---------------------------------CcccccCCHHHHHHHHHHHhcCCHHHH
Confidence 99974 1 234999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEE-ecCCC
Q 012211 217 IFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFY-MSSEG 295 (468)
Q Consensus 217 I~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l-~~~~~ 295 (468)
|+++|++|+|+ ++|+|| |+++++|+|+++||++++||++|++. ..+|++||| .|.+
T Consensus 112 i~~~~~~l~v~--g~VlP~--t~~~v~l~A~~~dG~~v~GE~~I~~~------------------~~~I~~v~l~~p~~- 168 (326)
T 2q7x_A 112 MQLLSXFFHTT--GXIYPS--SDHPLTLHAVFQDGTEVAGESHIVDH------------------RGIIDNVYVTNALN- 168 (326)
T ss_dssp HHHHHHHHTCC--SEEEES--BSSCEEEEEEETTSCEEESHHHHHHS------------------CSCEEEEEEEESSC-
T ss_pred HHHHHHHhCCC--eeEeec--CCCceeEEEEecCCceEeeeeecccC------------------CCCceEEEEeCCCC-
Confidence 99999999998 899999 89999999999999999999999974 579999999 6642
Q ss_pred CCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHH
Q 012211 296 SNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTA 374 (468)
Q Consensus 296 ~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~a 374 (468)
++.|+|+|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++||+++
T Consensus 169 -----~~~~~a~p~al~AI~~AD~IvlgPGSl~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nlm~~~GEt~g~s~~dhv~~ 243 (326)
T 2q7x_A 169 -----DDTPLASRRVVQTILESDMIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCNIMTQRGETEHFTDSDHVEV 243 (326)
T ss_dssp -----SSCCCBCSHHHHHHHHCSEEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECCSBCCTTSCTTCCHHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHhCCEEEECCCCCHHHHhhhhhhccHHHHHHhccCceEEeccCcCCCCCCCCCCHHHHHHH
Confidence 235899999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhcccCCCCCCC-CCCCccccc--eeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHH
Q 012211 375 ITDALNRAYGDPQKS-LKNSPSQYI--NTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADL 451 (468)
Q Consensus 375 l~~~lg~~~~~~~~~-~~~~~~~~l--~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l 451 (468)
+.+|++....|.++. ....+++++ .+|.-. ...|.+|.+.++++|++ |+..++++..+...+||+++||++|+++
T Consensus 244 i~~~~~~~~~D~vlv~~~~~~~~~~~~~~y~~~-~~~v~~d~~~l~~~G~~-vi~~~~~~~~~~~~rhD~~~La~al~~l 321 (326)
T 2q7x_A 244 LHRHLGRPFIDTVLVNIEXVPQEYMNSNRFDEY-LVQVEHDFVGLCXQVSR-VISSNFLRLENGGAFHDGDLIVDELMRI 321 (326)
T ss_dssp HHHHHSSCCCSEEEEECSCCCHHHHHHTTCCTT-CCBCCCCHHHHHHHCSE-EEEECCEEEETTEEEECHHHHHHHHHHH
T ss_pred HHHhcCCCCCCEEEECCCCCchhhhhhhhhhhc-CCccccCHHHHhhcCCE-EEEecccccCCCCCccCHHHHHHHHHHH
Confidence 999999877776553 334455666 444322 22477899999999998 4578887754566899999999999998
Q ss_pred Hhh
Q 012211 452 LGR 454 (468)
Q Consensus 452 ~~~ 454 (468)
+.+
T Consensus 322 ~~~ 324 (326)
T 2q7x_A 322 IQV 324 (326)
T ss_dssp CCC
T ss_pred HHh
Confidence 854
No 4
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=100.00 E-value=3.5e-85 Score=665.82 Aligned_cols=318 Identities=25% Similarity=0.381 Sum_probs=214.1
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhc
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLG 136 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~~~~~l~~Lf~ 136 (468)
.++||||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||+|||+.++ .+.+||+
T Consensus 8 ~~~~kIVvigGGtGl~~ll~gLk~~~~~iTaIVtvaDDGGSSG~lR~~~g~~~pGDiRn~L~aLa~~~~----~~~~L~~ 83 (341)
T 2p0y_A 8 TQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPD----LYKDIFQ 83 (341)
T ss_dssp --CCEEEEECCGGGHHHHHHHHHHSSSEEEEECC----------------------CHHHHHHHCCCCS----HHHHHTC
T ss_pred cCCCeEEEECCcccHHHHHHHHHhCCCCeEEEEECCcCCccceeHHhhcCCCCCcHHHHHHHHhCCCcH----HHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999976 6999999
Q ss_pred CcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhcCCHHHH
Q 012211 137 HRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAA 216 (468)
Q Consensus 137 ~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~gsl~~A 216 (468)
|||+. | +.+|+|||+|||||+|++++.|+|.+|
T Consensus 84 yRf~~--------------g---------------------------------d~~lagHs~GNL~Laal~~~~G~~~~a 116 (341)
T 2p0y_A 84 YRFQG--------------D---------------------------------DQFFAGHAIGNLIIAALTEMKSGVFDA 116 (341)
T ss_dssp --------------------------------------------------------------CCCC---------CHHHH
T ss_pred cCCCC--------------C---------------------------------CcccccCCHHHHHHHHHHHhcCCHHHH
Confidence 99974 1 234999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEEecCCCC
Q 012211 217 IFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGS 296 (468)
Q Consensus 217 I~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~ 296 (468)
|+++|++|+|+ ++|+|| |+++++|+|+++||++++||++|++. +++|++|||.|.+
T Consensus 117 i~~~~~~l~v~--g~VlP~--t~~~v~L~A~~~dG~~v~GE~~I~~~------------------~~~I~~v~l~p~~-- 172 (341)
T 2p0y_A 117 VQELSNMMQVD--GHVYPA--ANEALTLHGKFSDGTELVGEAEITAA------------------HKSLERVWVTDKN-- 172 (341)
T ss_dssp HHHHHHHTTCS--SEEECC------CCEEECCSSCC-----------------------------CCCCCCEEEC-----
T ss_pred HHHHHHHhCCC--CEEEcC--CCCceEEEEEECCCCEEEEeEeccCC------------------CCCceEEEEeCCC--
Confidence 99999999998 899999 89999999999999999999999873 6799999997652
Q ss_pred CCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC-CCCCCCCCCCHHHHHHHH
Q 012211 297 NLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRETSGFSASCFVTAI 375 (468)
Q Consensus 297 ~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl-~~~gET~g~s~~d~v~al 375 (468)
++.|+|+|+|++||++||+||||||||||||+|||+++||++||++++|+||||||+ +|+|||+||+++||++++
T Consensus 173 ----~~~~~a~p~al~AI~~AD~IvlgPGSlyTSI~P~Llv~gi~~Ai~~s~A~kV~V~Nlm~~~GEt~g~s~~dhv~ai 248 (341)
T 2p0y_A 173 ----GKEPQAVQPVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFSDADHVRVL 248 (341)
T ss_dssp -------CCCCHHHHHHHHHCSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECCSBC--CCSTTCBHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCccHHHHHHhCCCCEEEEeCCCCCCCCCCCCCHHHHHHHH
Confidence 235899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCCCC-CCCCccccc--eeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCCCCccCHHHHHHHHHHHH
Q 012211 376 TDALNRAYGDPQKS-LKNSPSQYI--NTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLL 452 (468)
Q Consensus 376 ~~~lg~~~~~~~~~-~~~~~~~~l--~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~~~rhD~~~La~al~~l~ 452 (468)
.+|++....|.++. ....+++++ .+|..... .|.+|.+.++++|++ |+..++++..+...+||+++||++|++++
T Consensus 249 ~~~~~~~~iD~vlvd~~~~~~~~~~~~~y~~~~~-~v~~d~~~l~~~G~~-vi~~~l~~~~~~~~rhD~~~La~al~~l~ 326 (341)
T 2p0y_A 249 NRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSK-QVSHDFRGLREQNCR-VISSNFLKLRDNGAFHDGDQVVAELMNLV 326 (341)
T ss_dssp HHTC----CCEEEEECSCCCHHHHHHC-----CC-BCBCCHHHHHTTTCE-EEEECCCCC------CCSHHHHHHHHHHH
T ss_pred HHhcCCCCCCEEEECCCCCchhhhhhhhhhhcCC-ccccCHHHHHhCCCE-EEEecccccCCCCCccCHHHHHHHHHHHH
Confidence 99999877776543 334556666 45433222 378899999999998 45788777656678999999999999999
Q ss_pred hhh
Q 012211 453 GRH 455 (468)
Q Consensus 453 ~~~ 455 (468)
...
T Consensus 327 ~~~ 329 (341)
T 2p0y_A 327 GHS 329 (341)
T ss_dssp HHC
T ss_pred Hhh
Confidence 764
No 5
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=100.00 E-value=2.4e-69 Score=542.78 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=241.0
Q ss_pred EEEEeCCccchHHHHHHHc--CCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCCh---h---H---HH
Q 012211 62 LLVFSGGTAFNGVVEELKN--ITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTP---E---A---LA 130 (468)
Q Consensus 62 IVv~gGGTGl~~llrgLk~--~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIRn~L~aLa~~~~~---~---~---~~ 130 (468)
||+||||||++++++|||+ ++.++|+||||+|||||||+| + +| ||||||||||+..+. | + ..
T Consensus 1 iv~lgGGtGl~~ll~gLk~~~~~~~itaIVtvaDDGgssG~l-----v-~P-Dir~~l~aLa~~~~~e~~~g~~gdt~~~ 73 (311)
T 3c3d_A 1 MIIFSGGTGTPKLLDGLKEILPEEELTVVVNTAEDLWVSGNL-----I-SP-DLDTVLYLFSDQIDRKRWWGIENDTFGT 73 (311)
T ss_dssp CEEEECTTHHHHHHHHHTTTSCGGGCEEEECCTTCEEETTEE-----E-CH-HHHHHHHHTTTCBCTTTTSSBTTCCCHH
T ss_pred CEEEeCcccHHHHHHHHHhCCCCCCeEEEEECCcCCccccCc-----c-Cc-cHHHHHHHhCCCccccccccccCchHHH
Confidence 6999999999999999998 689999999999999999986 3 33 999999999998532 1 1 45
Q ss_pred HHHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCccchhHHHHHHhHHhhc
Q 012211 131 VRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFF 210 (468)
Q Consensus 131 l~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~e~L~~~~~~~dl~ghslGNL~Laa~~~~~ 210 (468)
+.+||+|||.. | | ..++|||++||+|||||++ .
T Consensus 74 ~~~L~~~rf~~--------~----------------------------~-------~~gd~dlagH~~gNl~L~a----~ 106 (311)
T 3c3d_A 74 YERMKELGIEE--------G----------------------------L-------KLGDRDRATHIIRSNIIRD----G 106 (311)
T ss_dssp HHHHHHTTCCC--------S----------------------------S-------CCCHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHhcCcc--------c----------------------------c-------cCCCcccccChHHHHHHHc----c
Confidence 67777777642 1 1 1346899999999999998 4
Q ss_pred CCHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccCcCCCCCCCccEEEE
Q 012211 211 QSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFY 290 (468)
Q Consensus 211 gsl~~AI~~~s~~l~I~~~g~VlP~~~T~~~v~L~A~l~dG~~v~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l 290 (468)
++|.+||+.+|++++|+ ++|+|| |+++++|+|+++||++++||++|+++. .++|++|||
T Consensus 107 ~~l~~ai~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~ge~~I~~~~-----------------~~~I~~v~l 165 (311)
T 3c3d_A 107 ASLTDSTVKLSSLFGIK--ANILPM--SDDPVSTYIETAEGIMHFQDFWIGKRG-----------------EPDVRGVDI 165 (311)
T ss_dssp CCHHHHHHHHHHHHTCC--SEEEES--CSSCCEEEEEESSCEEEHHHHHTTSTT-----------------CSCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCC--CEEECC--CCCceEEEEEECCCCEEEEeeccCCCC-----------------CCCeeEEEE
Confidence 69999999999999998 899999 899999999999999999999998752 469999999
Q ss_pred ecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeC-------------C
Q 012211 291 MSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN-------------G 357 (468)
Q Consensus 291 ~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~N-------------l 357 (468)
.+.+ .|+|+|+|++||++||+||||||||||||+|||+++||++||+++ +|||||| +
T Consensus 166 ~~~~--------~~~a~p~vl~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Al~~s--~kV~v~n~i~~~~~~Gpa~~~ 235 (311)
T 3c3d_A 166 RGVS--------EASISPKVLEAFEKEENILIGPSNPITSIGPIISLPGMRELLKKK--KVVAVSPIIGNAPVSGPAGKL 235 (311)
T ss_dssp ETTT--------TCCCCHHHHHHHHHCCEEEECSSCTTTTSHHHHHSTTHHHHHHTS--EEEEECCEETTEESSSTHHHH
T ss_pred cCcc--------CCCCCHHHHHHHHhCCEEEECCCCCHHHHhhhcCchhHHHHHHcC--CEEEEccCcCCcccccchhhc
Confidence 8743 589999999999999999999999999999999999999999999 9999999 4
Q ss_pred -CCCC-CCCCCCHHHHHHHHHHHhcccCCCCCCCCCCCccccceeeEecCCCCCcCCHHHHHhCCCeEEEeccceecCCC
Q 012211 358 -LEDR-ETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKV 435 (468)
Q Consensus 358 -~~~g-ET~g~s~~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~l~~~Gi~~vi~~~~l~~~~~ 435 (468)
+|+| ||+++++.+|++ +++|.+++|..+ ..|.++++++|++ |+..+++|+.
T Consensus 236 m~~~G~et~~~~v~~h~~----------------------~~lD~vlvd~~~--~~d~~~~~~~G~~-vi~~~~~~~~-- 288 (311)
T 3c3d_A 236 MPACGIEVSSMGVAEYYQ----------------------DFLDVFVFDERD--RADEFAFERLGCH-ASRADTLMTS-- 288 (311)
T ss_dssp TGGGTCCSSHHHHHHHHT----------------------TTCCEEEEEGGG--CCCHHHHHHHTCE-EEEECCCCCS--
T ss_pred ccCCCCcCchhHHHHHhh----------------------ccCCEEEECCCc--cccHHHHHhCCCE-EEEeccccCC--
Confidence 7888 888777766664 346777777664 3588899999998 5678888653
Q ss_pred CCccCHHHHHHHHHHHHhhhcc
Q 012211 436 GIIFDPKSLIQAIADLLGRHMK 457 (468)
Q Consensus 436 ~~rhD~~~La~al~~l~~~~~~ 457 (468)
+||+++||+++++++..+..
T Consensus 289 --~hd~~~LA~al~~l~~~~~~ 308 (311)
T 3c3d_A 289 --TEKSKELAEIVVQAFLEHHH 308 (311)
T ss_dssp --HHHHHHHHHHHHHHHHHC--
T ss_pred --ccCHHHHHHHHHHHHHhccc
Confidence 99999999999999987643
No 6
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=75.43 E-value=1.3 Score=46.53 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+...|||||+|||.|.-.+++.|++...++|.|
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLI 71 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSII 71 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEE
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEE
Confidence 345789999999999999999998777777765
No 7
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=69.56 E-value=3.8 Score=40.67 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCcc-----chHHHHHHHcCCCCeEEE
Q 012211 58 TQPSLLVFSGGTA-----FNGVVEELKNITTRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTG-----l~~llrgLk~~~~~lTaI 88 (468)
|.+||++-||||| +-.+.+.|++.+++++.|
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~v 36 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWL 36 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4679999999998 346788999888887765
No 8
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=65.15 E-value=3.7 Score=40.76 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCe
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRV 85 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~l 85 (468)
++||||+|||.|.-..+..|++...++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~ 28 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSI 28 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCC
Confidence 689999999999999999998876543
No 9
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=64.21 E-value=3.7 Score=41.97 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=23.0
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCe
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRV 85 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~l 85 (468)
|||||+|||.|.-..+..|++...+.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~ 26 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKES 26 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCC
Confidence 89999999999999999999887553
No 10
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=62.51 E-value=4.4 Score=40.78 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+.|||||+|||.+.-..+..|.....++|.|
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itli 38 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMI 38 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEE
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEE
Confidence 357899999999999999999997666776654
No 11
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=54.04 E-value=7.4 Score=39.44 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
|.+||||+|||.|.-..++.|++...+
T Consensus 1 M~K~VvIIGgG~aGl~aA~~L~~~~~~ 27 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPD 27 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTT
T ss_pred CCCcEEEECCCHHHHHHHHHHhccCcC
Confidence 346899999999999999999987644
No 12
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=46.70 E-value=11 Score=36.60 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+||+|+|||-+...+...|++.+.+++.+
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence 369999999999999999999988775544
No 13
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=45.49 E-value=16 Score=31.68 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
...|+|+|||-+...+...|++.+.+++.+
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLF 31 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 346999999999999999999998875543
No 14
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=43.76 E-value=15 Score=34.03 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-..+..|++...+++.|
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li 31 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLV 31 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999999988776655
No 15
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=43.48 E-value=12 Score=35.37 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=26.2
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+..+|+|+|||.+.-..+..|++.+.+++.|
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vi 51 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILY 51 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 4568999999999999999999988875544
No 16
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=43.03 E-value=17 Score=37.84 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=29.6
Q ss_pred CCCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCC
Q 012211 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (468)
Q Consensus 54 ~~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~D 93 (468)
..+....+|||+|||.+.-..+..|++.+.+++. |--.+
T Consensus 38 ~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~l-iE~~~ 76 (523)
T 1mo9_A 38 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLI-VDRWP 76 (523)
T ss_dssp TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEE-EESSS
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEE-EeCCC
Confidence 3344567899999999999999999998887654 44334
No 17
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=42.33 E-value=26 Score=29.52 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
+.....+|+++|.|.=...+++.|++.+.++++|-.
T Consensus 3 ~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~ 38 (140)
T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIET 38 (140)
T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 345677999999999999999999998887776644
No 18
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=41.47 E-value=21 Score=30.45 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
..++|+++|+|.=...+++.|.+.+.++++|-.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 356899999999999999999998888877754
No 19
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=41.43 E-value=21 Score=33.28 Aligned_cols=33 Identities=9% Similarity=-0.060 Sum_probs=28.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv 91 (468)
.++|||+|||.+.-..+..|++...+++.|+--
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~ 36 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK 36 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC
Confidence 468999999999999999999988888875655
No 20
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=40.75 E-value=17 Score=33.88 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=25.2
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+.-..+..|++...+++.|
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li 44 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVI 44 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 468999999999999999999888775443
No 21
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=38.04 E-value=24 Score=31.66 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=33.5
Q ss_pred HHHHHHhc----CCEEEEcCCCch-hhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNA----VDCIIYAMGSLF-TSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~----ADlIvlGPGSly-TSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+ .|.|||=||-+= ||| -++|||+....|. |=++|+
T Consensus 62 eLId~Ih~a~~~~dgiiINpgA~THtSv-------AlrDAl~~~~~P~VEVHiSNi 110 (153)
T 3lwz_A 62 ALIDSIHQARGNTDFILINPAAFTHTSV-------ALRDALLGVQIPFIEIHLSNV 110 (153)
T ss_dssp HHHHHHHHHTTTCSEEEEECGGGGGTCH-------HHHHHHHHHTCCEEEEESSCG
T ss_pred HHHHHHHHhhhcCceEEEccccceechH-------HHHHHHHhcCCCEEEEEcCCc
Confidence 45555554 699999999995 999 7899998877776 777888
No 22
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=37.98 E-value=15 Score=37.16 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.8
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
..+..+|+|+|||-+...+...|++.+.+++.|=
T Consensus 19 ~~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE 52 (430)
T 3ihm_A 19 SHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYT 52 (430)
T ss_dssp ----CEEEEECCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEc
Confidence 3455789999999999999999999988776664
No 23
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=37.81 E-value=20 Score=35.80 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
.++|||+|||.+.-..+..|++...+
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~~ 27 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGFE 27 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEcccHHHHHHHHHHHccCcC
Confidence 35899999999999999999998876
No 24
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=37.37 E-value=22 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=29.3
Q ss_pred CCCeEEEEeCCccchHHHHHHHc-CC-CCeEEEEeCCCCCcchH
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKN-IT-TRVAHVLPVSDDGGSTA 99 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~-~~-~~lTaIVtv~DdGGSSG 99 (468)
...+|+|+|||.+...+...|.+ .+ .+++.|=--.--+|+|+
T Consensus 20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~~gas~ 63 (405)
T 2gag_B 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMA 63 (405)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCSGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCccc
Confidence 34589999999988888888988 77 67655433222344555
No 25
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=37.35 E-value=18 Score=33.88 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=34.6
Q ss_pred CCCCCCeEEEE--eCCccchHHHHHHHc-CCCCeEEEEeCCCCCcchHHHHHHcCCC
Q 012211 55 PTHTQPSLLVF--SGGTAFNGVVEELKN-ITTRVAHVLPVSDDGGSTAEIVRVLGGP 108 (468)
Q Consensus 55 ~~~~~pkIVv~--gGGTGl~~llrgLk~-~~~~lTaIVtv~DdGGSSG~LR~~~g~~ 108 (468)
+|.+.+||+|| |.||-+..|+..++. +..++.+||+--|-.+ -+.=+.+|+|
T Consensus 8 ~~~~~~ri~vl~SG~gsnl~all~~~~~~~~~eI~~Vis~~~a~~--~~~A~~~gIp 62 (215)
T 3da8_A 8 PPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRA--AEIAAEASVP 62 (215)
T ss_dssp CCCSSEEEEEEESSCCHHHHHHHHHSSTTCSEEEEEEEESSCCHH--HHHHHHTTCC
T ss_pred CCCCCcEEEEEEeCChHHHHHHHHHHhccCCCeEEEEEeCCchHH--HHHHHHcCCC
Confidence 45666799999 666767788887754 3457888888766321 2233567776
No 26
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=37.02 E-value=33 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=31.1
Q ss_pred HhcCCEEEEcCCCch-hhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 314 LNAVDCIIYAMGSLF-TSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 314 I~~ADlIvlGPGSly-TSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
..++|.|||=||-+= ||| .++|||+....|. |=++|+
T Consensus 92 ~~~~dgIIINPgAyTHtSv-------AlrDAL~~v~~P~VEVHiSNi 131 (172)
T 3n8k_A 92 ADAAEPVILNAGGLTHTSV-------ALRDACAELSAPLIEVHISNV 131 (172)
T ss_dssp HHHTCCEEEECGGGGGTCH-------HHHHHHTTCCSCEEEEESSCT
T ss_pred hhcCcEEEECcchhhhhhH-------HHHHHHHhCCCCEEEEEcCCc
Confidence 345799999999995 999 7999999888776 677888
No 27
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=37.01 E-value=25 Score=33.13 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
-.+.+|+|+|||.=....++.|.+.+.++|+|-+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 4678999999999999999999999998887644
No 28
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=36.81 E-value=22 Score=35.35 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
+++|||+|||.+.-..+..|++...+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~ 26 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYP 26 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcC
Confidence 36899999999999999999998773
No 29
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=36.55 E-value=32 Score=32.21 Aligned_cols=50 Identities=12% Similarity=0.281 Sum_probs=35.2
Q ss_pred CCeEEEE--eCCccchHHHHHHHc-CCCCeEEEEeCCCCCcchHHHHHHcCCCC
Q 012211 59 QPSLLVF--SGGTAFNGVVEELKN-ITTRVAHVLPVSDDGGSTAEIVRVLGGPA 109 (468)
Q Consensus 59 ~pkIVv~--gGGTGl~~llrgLk~-~~~~lTaIVtv~DdGGSSG~LR~~~g~~~ 109 (468)
.+||+|| |.||-+..++..++. +..++.+||+--+|... -+.=+.+|+|.
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~-~~~A~~~gIp~ 57 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRADAYG-LKRAQQADIPT 57 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHH-HHHHHHTTCCE
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHH-HHHHHHcCCCE
Confidence 4689999 778888899999876 46688889886555422 12345677764
No 30
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=35.37 E-value=39 Score=30.68 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=42.5
Q ss_pred hcCCEEEEcCCCch-hhhcccccchhHHHHHhcCCCCE--EEEeCC--CCC------------CCCCCCCHHHHHHHHHH
Q 012211 315 NAVDCIIYAMGSLF-TSICPSLVLLGIGEIISSRSCPK--VLLLNG--LED------------RETSGFSASCFVTAITD 377 (468)
Q Consensus 315 ~~ADlIvlGPGSly-TSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl--~~~------------gET~g~s~~d~v~al~~ 377 (468)
.+.|.|||=||-+= ||| .++|||+....|. |=++|+ .++ |--.||.+..+.-+|..
T Consensus 82 ~~~dgIIINpgAyTHtSv-------AlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~ 154 (167)
T 3kip_A 82 QGVGFVVINAGAYTHTSV-------GIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEY 154 (167)
T ss_dssp TTCCEEEEECGGGGGTCH-------HHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHH
T ss_pred cCccEEEEccccceeccH-------HHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHH
Confidence 45789999999995 999 7999999888776 777888 232 22227777777777654
Q ss_pred Hh
Q 012211 378 AL 379 (468)
Q Consensus 378 ~l 379 (468)
.+
T Consensus 155 l~ 156 (167)
T 3kip_A 155 AL 156 (167)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 31
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=35.34 E-value=49 Score=27.07 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=31.9
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHH-HhcCCCCEEEE
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLL 354 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eA-I~~s~a~kV~I 354 (468)
..+.++..+ ++|+||+|--. .+-+..+++..+.+. +++++||++.|
T Consensus 99 ~~~I~~~a~~~~~dliV~G~~~--~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 99 SRTIVRFARKRECDLVVIGAQG--TNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHTTCSEEEECSSC--TTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCC--CccccceeeccHHHHHHhhCCCCEEEC
Confidence 467778888 89999999653 234455666777655 46778887654
No 32
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=35.17 E-value=19 Score=30.90 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=17.8
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++++++||+|+.-++.=++.+
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l 40 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAW 40 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHH
T ss_pred CCeEEEEECcCcHHHHHHHHHHH
Confidence 46899999999988776655543
No 33
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=34.99 E-value=28 Score=35.79 Aligned_cols=31 Identities=26% Similarity=0.148 Sum_probs=25.7
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVA 86 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lT 86 (468)
+..+.+|+|+|||.+.-..+..|++.+.++|
T Consensus 119 ~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~ 149 (456)
T 2vdc_G 119 RELGLSVGVIGAGPAGLAAAEELRAKGYEVH 149 (456)
T ss_dssp SSCCCCEEEECCSHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 3467799999999999999999998877743
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=34.92 E-value=22 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=21.6
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC---CCCeEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI---TTRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~---~~~lTaI 88 (468)
...++++|+||+|+.-++.=++.+ ..+++.+
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~ 55 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTL 55 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEE
Confidence 356899999999988776655544 3444444
No 35
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=34.85 E-value=21 Score=35.80 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcC--CCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI--TTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~--~~~lTaI 88 (468)
..+|||+|||.+.-..+..|++. ..++|.|
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtli 33 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLI 33 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEE
Confidence 35899999999999999999884 4555443
No 36
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=34.80 E-value=22 Score=34.76 Aligned_cols=30 Identities=23% Similarity=-0.030 Sum_probs=25.1
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.|
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~vi 40 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLH 40 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999987665444
No 37
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=34.27 E-value=22 Score=34.61 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS 92 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~ 92 (468)
-.+.+|+|+|||.=..+.++.|.+.+.++|+|-+-.
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 367899999999999999999999999988876544
No 38
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=34.26 E-value=26 Score=28.59 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=24.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+++|+++|+|.=...+++.|.+.+.+++++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~ 33 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLI 33 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 478999999998889999999887766554
No 39
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=34.19 E-value=27 Score=33.73 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchH
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTA 99 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG 99 (468)
..+|+|+|||.+...++..|.+.+.+++.|=.-.--+|+|+
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~ 57 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTS 57 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccch
Confidence 35899999999999999999988777655433222234455
No 40
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=33.99 E-value=21 Score=37.54 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCC
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
+.+.++|||+|||.+.-..+..|++..
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~ 59 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLS 59 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHC
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhC
Confidence 345679999999999999999999873
No 41
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=33.79 E-value=45 Score=33.10 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.4
Q ss_pred CCeEEEEeCCccch-HHHHHHHcCCCCeEEEEeCCCC
Q 012211 59 QPSLLVFSGGTAFN-GVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 59 ~pkIVv~gGGTGl~-~llrgLk~~~~~lTaIVtv~Dd 94 (468)
.+||+||| ++-+. .+++.|.+-..++.+|||--|.
T Consensus 22 ~mrIvf~G-~~~fa~~~L~~L~~~~~~i~~Vvt~pd~ 57 (329)
T 2bw0_A 22 SMKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDK 57 (329)
T ss_dssp CCEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 37999995 45555 4788888777899999998775
No 42
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=33.69 E-value=35 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCC--eEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTR--VAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~--lTaIV 89 (468)
..+++++|||||+.-++.-|+.+..+ +++++
T Consensus 112 ~~~~lliagGtGitPi~s~l~~l~~~~~~~~~~ 144 (252)
T 2gpj_A 112 ADWFLLAGDMTALPAISVNLAKLPNNAVGYAVI 144 (252)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHSCTTCEEEEEE
T ss_pred CceEEEEcchhhHHHHHHHHHhCCCCCcEEEEE
Confidence 35799999999999999888887543 44444
No 43
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=33.62 E-value=39 Score=33.83 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd 94 (468)
.+.++|+++|||..++-++++.++++.++++|-+..|+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~ 40 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAED 40 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSC
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcc
Confidence 46789999999999999999999999988888776665
No 44
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=33.48 E-value=29 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=25.4
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
+|+|+|||-..-.+...|++.+.+++.|-
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie 31 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLD 31 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 79999999999999999999988877654
No 45
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=33.21 E-value=29 Score=32.84 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||-....+...|++.+.+++.|
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vl 31 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLF 31 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEE
Confidence 58999999999999999999988776554
No 46
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=33.13 E-value=27 Score=36.52 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCeEEEEeCCccchHHHHHHHc---CCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKN---ITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~---~~~~lTaI 88 (468)
..+|||+|||++...+...|++ .+.+++.|
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~li 57 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLL 57 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEE
Confidence 3489999999999999999999 66666554
No 47
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=32.99 E-value=23 Score=35.33 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
+..+|||+|||.+.-..+..|++...+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~ 34 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFE 34 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcC
Confidence 456899999999999999999998766
No 48
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=32.92 E-value=21 Score=35.36 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=23.7
Q ss_pred CeEEEEeCCccchHHHHHHHc---CCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKN---ITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~---~~~~lTaI 88 (468)
++|||+|||.+.-..+..|++ ...++|.|
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vi 33 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVI 33 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence 589999999999888898998 55666554
No 49
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=32.43 E-value=23 Score=35.05 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=21.7
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCC
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
-+.+.+|||+|||.|.-..+..|++..
T Consensus 5 ~~~~~~vvIIGgG~AGl~aA~~l~~~g 31 (367)
T 1xhc_A 5 HHHGSKVVIVGNGPGGFELAKQLSQTY 31 (367)
T ss_dssp ----CEEEEECCSHHHHHHHHHHTTTS
T ss_pred ccCCCcEEEECCcHHHHHHHHHHhhcC
Confidence 356789999999999999999999887
No 50
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=32.38 E-value=28 Score=34.22 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=25.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+...+...|++.+.+++.|
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~ 34 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIV 34 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999988775554
No 51
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=32.02 E-value=21 Score=30.96 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++|+|+||||+.-++.-|+.+
T Consensus 16 ~~~~~vlIagG~GItP~~s~l~~l 39 (186)
T 3a1f_A 16 SYEVVMLVGAGIGVTPFASILKSV 39 (186)
T ss_dssp TSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred hCCeEEEEecCccHHHHHHHHHHH
Confidence 345899999999999887766543
No 52
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=32.01 E-value=26 Score=34.56 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=25.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.|
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~ 52 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVY 52 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999988775544
No 53
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=31.95 E-value=27 Score=35.15 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred CeEEEEeCCccchHHHHHHHc---CCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKN---ITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~---~~~~lTaI 88 (468)
++|||+|||.+.-..+..|++ ...++|.|
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtli 36 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEE
Confidence 589999999999999999988 45565544
No 54
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=31.72 E-value=22 Score=36.56 Aligned_cols=29 Identities=31% Similarity=0.225 Sum_probs=24.3
Q ss_pred CeEEEEeCCccchHHHHHHHc---CCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKN---ITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~---~~~~lTaI 88 (468)
.+|||+|||++...+...|.+ .+.+++.|
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lv 34 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLV 34 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence 489999999999999999998 66665544
No 55
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=31.69 E-value=22 Score=36.08 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=22.7
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVA 86 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lT 86 (468)
++|||+|||.+.-..+..|++. ..+++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~ 31 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEIS 31 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEE
Confidence 6999999999999999999987 44444
No 56
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=31.66 E-value=30 Score=32.63 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=24.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-.++..|++...+++.|
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vi 32 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVIL 32 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 48999999999999999999988775544
No 57
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=31.50 E-value=28 Score=33.26 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=26.0
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+..+|+|+|||.+.-..+..|++...+++.|
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li 43 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVF 43 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 34568999999999999999998887776544
No 58
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=30.75 E-value=38 Score=32.80 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCC-CcchH
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD-GGSTA 99 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~Dd-GGSSG 99 (468)
..+|+|+|||.....+...|.+.+.+++.|= -.+- +|+|+
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle-~~~~~~gas~ 45 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIE-KRFIGSGSTF 45 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEC-SSSTTCSHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEe-CCCCCCCccc
Confidence 3589999999999999999998877744443 2232 34555
No 59
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=30.56 E-value=32 Score=32.23 Aligned_cols=29 Identities=10% Similarity=-0.099 Sum_probs=24.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.+.-..+..|++...+++.|
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li 36 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKII 36 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 58999999999999999999887775544
No 60
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=30.10 E-value=33 Score=37.48 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHH
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIR 114 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGGSSG~LR~~~g~~~~GDIR 114 (468)
+....+|||+|||.+.-..+..|++.+.++|. +.-.+. -.|.++....+|...+++
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtl-ie~~~~--~GG~~~~~~~~pg~~~~~ 441 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHL-TDTAEK--IGGHLNQVAALPGLGEWS 441 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSSS--TTTTHHHHTTSTTCGGGH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCCeEEE-EeCCCC--cCCeeeecccCCChHHHH
Confidence 34567999999999999999999988776332 222222 234555544444334544
No 61
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=29.90 E-value=34 Score=36.78 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=24.9
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVA 86 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lT 86 (468)
....+|||+|||.+.-..+..|++.+.+++
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~ 400 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVT 400 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 345689999999999999999998876643
No 62
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=29.79 E-value=33 Score=32.92 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.9
Q ss_pred CeEEEEeCCccchHHHHHHHcCCC-CeE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITT-RVA 86 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~-~lT 86 (468)
.+|+|+|||.+.-..+..|++... +++
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~ 32 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVI 32 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEE
Confidence 479999999999999999998876 543
No 63
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=29.65 E-value=71 Score=25.95 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEE
Q 012211 306 ANSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLL 354 (468)
Q Consensus 306 ~~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I 354 (468)
+..+.++..+ ++|+||+|-.. + -+-.+++..+.+.+ ++++||++.|
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~~~--~-~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIASHR--P-DITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSC--T-TCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred hHHHHHHHHHHhCCCEEEEeCCC--C-CCeeeeeccHHHHHHHhCCCCEEEe
Confidence 3467777777 79999999862 3 35666777777655 6678887665
No 64
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=29.46 E-value=22 Score=33.34 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+.-..+..|++...+++.|
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li 34 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLI 34 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 358999999999999999999888776543
No 65
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=29.31 E-value=45 Score=29.85 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHhc----CCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNA----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~----ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+ .|-|||=||-+ .||| .++|||+....|. |=++|+
T Consensus 56 eLId~Ih~a~~~~dgiIINpgA~THtSv-------AlrDAl~~v~~P~VEVHiSNi 104 (154)
T 1uqr_A 56 SLINRIHQAFQNTDFIIINPGAFTHTSV-------AIRDALLAVSIPFIEVHLSNV 104 (154)
T ss_dssp HHHHHHHHTTTTCCEEEEECTTHHHHCH-------HHHHHHHHHTCCEEEEESSCG
T ss_pred HHHHHHHHhhhcCcEEEECcchhccchH-------HHHHHHHhCCCCEEEEEecCc
Confidence 55666655 57999999999 5998 5899999887776 777888
No 66
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=29.22 E-value=47 Score=28.20 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=32.8
Q ss_pred CCHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEE
Q 012211 306 ANSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLL 354 (468)
Q Consensus 306 ~~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I 354 (468)
+..+.+++.+ +||+||+|--.. +-+-.+++..+.+.| ++++||++.|
T Consensus 105 ~~~~I~~~a~~~~~DLIV~G~~g~--~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 105 PPDDIVDFADEVDAIAIVIGIRKR--SPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCEE--CTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC--CCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 3467778888 899999996542 444556666777554 6778887665
No 67
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=28.92 E-value=30 Score=33.80 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=25.0
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||-+...+...|++.+.+++.|
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~ 31 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVIL 31 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 47999999999999999999988775544
No 68
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=28.64 E-value=35 Score=33.02 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=24.7
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..|+|+|||.+...+...|.+.+.+++.|
T Consensus 5 ~dVvIvG~G~aGl~~A~~La~~G~~V~l~ 33 (397)
T 3cgv_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMI 33 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 37999999999999999999988775544
No 69
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=28.60 E-value=36 Score=32.89 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+...+...|.+.+.+++.|
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vi 32 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 358999999999999999999887775543
No 70
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=28.39 E-value=43 Score=35.90 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 55 ~~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
++....+|||+|||.+.......|.+.+.+++.|=
T Consensus 268 ~~~~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlE 302 (676)
T 3ps9_A 268 TGSSKREAAIIGGGIASALLSLALLRRGWQVTLYC 302 (676)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 33445689999999999999999998877665553
No 71
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=28.00 E-value=39 Score=30.15 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.0
Q ss_pred HHHHHHhc-----CCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 309 AVLDQLNA-----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 309 ~ai~AI~~-----ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+.++.|.+ .|-|||=||-+ .||| .++|||+....|. |=++|+
T Consensus 54 eLId~Ih~a~~~~~dgiIINpgA~THtSv-------AlrDAl~~v~~P~VEVHiSNi 103 (149)
T 2uyg_A 54 QLIEWVQQAHQEGFLAIVLNPGALTHYSY-------ALLDAIRAQPLPVVEVHLTNL 103 (149)
T ss_dssp HHHHHHHHTTTTTCSEEEEECGGGGGTCH-------HHHHHHHTSCSCEEEEESSCG
T ss_pred HHHHHHHHhccCCeeEEEEccchhccccH-------HHHHHHHhCCCCEEEEEecCc
Confidence 45555544 57999999999 9998 5899999988776 777888
No 72
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=27.91 E-value=30 Score=35.47 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
+..+|||+|||.+.-..+..|++..
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g 58 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNY 58 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcC
Confidence 4579999999999999999998875
No 73
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=27.75 E-value=29 Score=31.50 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---C--CCeEEEEeCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---T--TRVAHVLPVS 92 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~--~~lTaIVtv~ 92 (468)
..++|+++||||+.-++.=++.+ . .+++.+..+-
T Consensus 102 ~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r 140 (232)
T 1qfj_A 102 ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGR 140 (232)
T ss_dssp SSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEES
T ss_pred CCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeC
Confidence 56899999999999877666544 1 4555554433
No 74
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=27.66 E-value=1.7e+02 Score=28.37 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=46.0
Q ss_pred cEEEEecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchh--------------hhcccccch---hHHHHHhcCC
Q 012211 286 KRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFT--------------SICPSLVLL---GIGEIISSRS 348 (468)
Q Consensus 286 ~rV~l~~~~~~~~~~~~~p~~~p~ai~AI~~ADlIvlGPGSlyT--------------SIiPnLlv~---GI~eAI~~s~ 348 (468)
+++.|.+.- ...++++++.++++|++|+- +++|+ +-.-++-.. +..+++++.+
T Consensus 194 ~~i~y~~Dt---------~~~~~~~~~~~~~~D~li~e-at~~~d~e~~~~glk~r~~~~~gH~s~~~~~eA~~~a~~~~ 263 (321)
T 3jxp_A 194 GKLFYAPGL---------GQVDEKLLAMMHGADCLLVD-GTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFP 263 (321)
T ss_dssp CEEEEESSC---------CCCCHHHHHHHHHCSEEEEE-CCCSSTTHHHHHTSCSCCCC-CCCCCSSSTTCHHHHHTTCS
T ss_pred cEEEEECCC---------CCCCHHHHHHhcCCCEEEEe-CCCCCcHHHhhccccccccCCCcccCCCCHHHHHHHHHhCC
Confidence 367777641 23568899999999998873 44444 233567777 7777778888
Q ss_pred CCEEEEeCCCCC
Q 012211 349 CPKVLLLNGLED 360 (468)
Q Consensus 349 a~kV~I~Nl~~~ 360 (468)
++++++.-+.+.
T Consensus 264 ~k~lvLtH~s~~ 275 (321)
T 3jxp_A 264 RQRKVLIHINNT 275 (321)
T ss_dssp SSEEEEESBCTT
T ss_pred CCeEEEEEeCCC
Confidence 899999888644
No 75
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=27.44 E-value=41 Score=30.76 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHhc-CCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 312 DQLNA-VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 312 ~AI~~-ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+|..+ .|-|||=||-+ .||| .++|||+....|. |=++|+
T Consensus 73 ~a~~~~~dgIIINpgAyTHtSv-------AlrDAl~~v~~P~VEVHiSNi 115 (176)
T 2c4w_A 73 ESVGSEYEGIIINPGAFSHTSI-------AIADAIMLAGKPVIEVHLTNI 115 (176)
T ss_dssp HHHSSSCCEEEEECGGGGGTCH-------HHHHHHHTSSSCEEEEESSCG
T ss_pred HhccCCeeEEEECcchhccchH-------HHHHHHHhCCCCEEEEEecCc
Confidence 34445 68999999999 5998 5899999988776 677888
No 76
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=27.42 E-value=40 Score=33.21 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=25.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||-+...+...|++.+.+++.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~ 34 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVY 34 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999987765544
No 77
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=27.33 E-value=42 Score=28.53 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+++|+|+|+|.=...+++.|++.+.+++++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vi 48 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVV 48 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 4579999999988888999999887765554
No 78
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=27.27 E-value=97 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.7
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEEeC
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLLN 356 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I~N 356 (468)
..+.+++.+ ++|+||+|--.. +-+-.+++..+.+.| ++++||++.|.+
T Consensus 109 ~~~I~~~a~~~~~dlIV~G~~g~--~~~~~~~~GSv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 109 HEEIVKIAEDEGVDIIIMGSHGK--TNLKEILLGSVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCS--SCCTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCC--CCccceEecchHHHHHHhCCCCEEEEeC
Confidence 356677777 899999995432 445566677787655 677899887753
No 79
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=27.26 E-value=39 Score=31.93 Aligned_cols=29 Identities=10% Similarity=-0.102 Sum_probs=24.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-..+..|++...+++.|
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li 34 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFV 34 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999998887775443
No 80
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=27.11 E-value=35 Score=32.25 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=24.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+.-..+..|++...+++.|
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li 37 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLIL 37 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 358999999999999999999888775544
No 81
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=27.10 E-value=30 Score=31.67 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.6
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+++||||+.-++.-++.+
T Consensus 116 ~~~~vliagG~GiaP~~~~l~~l 138 (243)
T 2eix_A 116 VKEMGMIAGGTGITPMLQVARAI 138 (243)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHH
T ss_pred CcEEEEEecCccHHHHHHHHHHH
Confidence 46899999999999877666544
No 82
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=26.97 E-value=84 Score=26.76 Aligned_cols=49 Identities=6% Similarity=0.228 Sum_probs=29.0
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHH-HhcCCCCEEEEeCC
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLLLNG 357 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eA-I~~s~a~kV~I~Nl 357 (468)
..+.++..+ ++|+||+|--. .+-+..+++..+.+. +++++||++.|..-
T Consensus 113 ~~~I~~~a~~~~~DLIVmG~~g--~~~~~~~~~Gsva~~vl~~a~~pVlvv~~~ 164 (175)
T 2gm3_A 113 KDVICQEVKRVRPDFLVVGSRG--LGRFQKVFVGTVSAFCVKHAECPVMTIKRN 164 (175)
T ss_dssp HHHHHHHHHHHCCSEEEEEECC--CC--------CHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHHhCCCEEEEeCCC--CChhhhhhcCchHHHHHhCCCCCEEEEcCC
Confidence 356667776 69999999532 233445566667755 56788999888765
No 83
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=26.72 E-value=35 Score=35.45 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=24.9
Q ss_pred CeEEEEeCCccchHHHHHHHc---CCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKN---ITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~---~~~~lTaIV 89 (468)
.+|||+|||.+...+...|.+ .+.+++.|=
T Consensus 6 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE 38 (538)
T 2aqj_A 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38 (538)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 589999999999999999998 666665553
No 84
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=26.71 E-value=37 Score=33.95 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
+..+|||+|||.+.-..+..|++...+
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~ 32 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQ 32 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCC
Confidence 456899999999999999999988764
No 85
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=26.71 E-value=34 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+++||||+.-++.-++.+
T Consensus 106 ~~~~vliagG~GitP~~~~l~~l 128 (248)
T 1fdr_A 106 CETLWMLATGTAIGPYLSILRLG 128 (248)
T ss_dssp CSEEEEEEEGGGGHHHHHHHHHC
T ss_pred CceEEEEEecccHHHHHHHHHHH
Confidence 56899999999999998888876
No 86
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=26.42 E-value=52 Score=29.12 Aligned_cols=39 Identities=31% Similarity=0.286 Sum_probs=31.8
Q ss_pred HHHhcCCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 312 DQLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+|..+.|-|||=||-+ .||| .++|||+....|. |=++|+
T Consensus 62 ~a~~~~dgiiiNpgA~THtSv-------AlrDAl~~v~~P~VEVHiSNi 103 (143)
T 1gqo_A 62 EAEEQYSGIVLNPGALSHYSY-------AIRDAVSSISLPVVEVHLSNL 103 (143)
T ss_dssp HHTTTCSEEEEECGGGGGTCH-------HHHHHHHTSCSCEEEEESSCG
T ss_pred HhhhcCcEEEEccchhccccH-------HHHHHHHhCCCCEEEEEecCc
Confidence 3344568999999999 5998 5899999988776 777888
No 87
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=26.36 E-value=52 Score=29.21 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHhcCCEEEEcCCCc-hhhhcccccchhHHHHHhcCCCCE--EEEeCC
Q 012211 312 DQLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~a~k--V~I~Nl 357 (468)
+|..+.|-|||=||-+ .||| .++|||+....|. |=++|+
T Consensus 64 ~a~~~~dgiiINpgA~THtSv-------AlrDAl~~v~~P~VEVHiSNi 105 (146)
T 1h05_A 64 QAADAAEPVILNAGGLTHTSV-------ALRDACAELSAPLIEVHISNV 105 (146)
T ss_dssp HHHHHTCCEEEECGGGGGTCH-------HHHHHHHTCCSCEEEEESSCG
T ss_pred HhhhcCcEEEECchhhccccH-------HHHHHHHhCCCCEEEEEecCc
Confidence 4445679999999999 5998 5899999988776 777888
No 88
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=26.17 E-value=41 Score=34.06 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=27.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCc
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGG 96 (468)
.+|+|+|||.|.-..+..|++.+.+++.|=. .+-||
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~-~~~GG 40 (450)
T 1ges_A 5 YDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGG 40 (450)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEcC-CCCCC
Confidence 4899999999999999999998877655433 34443
No 89
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=26.14 E-value=44 Score=31.03 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=32.7
Q ss_pred CeEEEE--eCCccchHHHHHHHcCCC--CeEEEEeCCCCCcchHHHHHHcCCCC
Q 012211 60 PSLLVF--SGGTAFNGVVEELKNITT--RVAHVLPVSDDGGSTAEIVRVLGGPA 109 (468)
Q Consensus 60 pkIVv~--gGGTGl~~llrgLk~~~~--~lTaIVtv~DdGGSSG~LR~~~g~~~ 109 (468)
+||+|| |.|+-+..++..|.+-.. ++.+||+--|+-. .-+.-+++|+|.
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~-~~~~A~~~gIp~ 54 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAY-AIERCKKHNVEC 54 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCH-HHHHHHHHTCCE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChH-HHHHHHHcCCCE
Confidence 489999 556667788888886544 7888998766632 112235667663
No 90
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=26.03 E-value=41 Score=33.12 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
..+|+|+|||-+...+...|++.+.+++.+=
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E 56 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE 56 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 3589999999999999999999877655443
No 91
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=26.01 E-value=94 Score=28.70 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=32.7
Q ss_pred CeEEEEe--CCccchHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCC
Q 012211 60 PSLLVFS--GGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPA 109 (468)
Q Consensus 60 pkIVv~g--GGTGl~~llrgLk~~--~~~lTaIVtv~DdGGSSG~LR~~~g~~~ 109 (468)
+||+||. +||-+..|+..++.- ..++.+|||--|+-.. -+.-+++|+|.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~-~~~A~~~gIp~ 53 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG-LDKAERAGIPT 53 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHH-HHHHHHTTCCE
T ss_pred CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHH-HHHHHHcCCCE
Confidence 4788884 455588888877654 5789999988776422 12236667764
No 92
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=25.98 E-value=73 Score=26.20 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=28.8
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHH-HhcCCCCEEEEeC
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLLLN 356 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eA-I~~s~a~kV~I~N 356 (468)
..+.++..+ ++|+||+|--.- +-+. +++..+.+. +++++||++.|.+
T Consensus 98 ~~~I~~~a~~~~~dliV~G~~~~--~~~~-~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVGSHGR--HGLA-LLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCCC--CCcC-eEecchHHHHHHhCCCCEEEEeC
Confidence 367778888 899999995431 2233 566667655 5677888877653
No 93
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=25.98 E-value=42 Score=34.31 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=25.9
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
..|+|||||.|.-.....|++.+.+++.|=.
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk 57 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE 57 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC
Confidence 4899999999999999999998887655543
No 94
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=25.79 E-value=31 Score=34.79 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.1
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVA 86 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lT 86 (468)
++|||+|||.|.-..+..|++. ..+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~ 29 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQ 29 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEE
Confidence 4799999999999999999887 44443
No 95
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=25.71 E-value=43 Score=31.76 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=24.7
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.......|.+.+.+++.|
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vl 33 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVA 33 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 48999999999999999999888776554
No 96
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=25.70 E-value=42 Score=34.00 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|||+|||.+.-..+..|++.+.+++.|
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~li 33 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLI 33 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 458999999999999999999887664433
No 97
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=25.59 E-value=40 Score=34.14 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.|.-..+..|++.+.+++.|
T Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~li 31 (468)
T 2qae_A 3 YDVVVIGGGPGGYVASIKAAQLGMKTACV 31 (468)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 48999999999999999999988775443
No 98
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=25.43 E-value=39 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=21.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC-CCeE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT-TRVA 86 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~-~~lT 86 (468)
++++|+++|+|.=...+++.|.+.+ .+++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~ 33 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVT 33 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEE
Confidence 3468999999877788888888876 4443
No 99
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=25.40 E-value=44 Score=36.09 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.1
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTa 87 (468)
....+|||+|||.+.-..+..|++.+.+++.
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~l 419 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVL 419 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 3456899999999999999999988776443
No 100
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=25.35 E-value=52 Score=32.44 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCC-CCeEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNIT-TRVAHV 88 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~-~~lTaI 88 (468)
+..+|+|+|||-+.-....-|++.+ .+++.+
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~ 36 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTIL 36 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEE
Confidence 4568999999998888888888887 676654
No 101
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=25.32 E-value=41 Score=34.24 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=28.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCc
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGG 96 (468)
..+|+|+|||.|.-..+..|++.+.+++.|= -.+-||
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE-~~~~GG 40 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIE-SKALGG 40 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE-SSCTTH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEc-CCCCCC
Confidence 3589999999999999999998887765443 333343
No 102
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=25.30 E-value=40 Score=34.69 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=27.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCc
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGG 96 (468)
.+|||+|||.|.-..+..|++...+++.| --.+-||
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~li-E~~~~GG 38 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHNAKVALV-EKSRLGG 38 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEE-ESSSTTH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEE-eCCCcCc
Confidence 57999999999999999999887775444 3334343
No 103
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=25.25 E-value=43 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=24.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||-+...+...|++.+.+++.|
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~vi 35 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVV 35 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999988775544
No 104
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=25.17 E-value=37 Score=31.33 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcC---C--CCeEEEEeCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI---T--TRVAHVLPVS 92 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~---~--~~lTaIVtv~ 92 (468)
..++|+++||||+.-++.=++.+ . .+++.+..+-
T Consensus 117 ~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r 155 (250)
T 1tvc_A 117 MAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVN 155 (250)
T ss_dssp SSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECS
T ss_pred CceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeC
Confidence 36899999999999887766544 2 4566555443
No 105
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=25.14 E-value=87 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=17.1
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT 83 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~ 83 (468)
.+||+++|||.|. ++|.+-++..
T Consensus 206 pkrVLIIGgGdG~--~~revlkh~~ 228 (381)
T 3c6k_A 206 GKDVLILGGGDGG--ILCEIVKLKP 228 (381)
T ss_dssp TCEEEEEECTTCH--HHHHHHTTCC
T ss_pred CCeEEEECCCcHH--HHHHHHhcCC
Confidence 4699999999995 5666655543
No 106
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=25.02 E-value=1e+02 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG 95 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdG 95 (468)
+.+|||++|-..=....|++|.+..+++.+|||--|.-
T Consensus 1 ~~mrivf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~ 38 (314)
T 3tqq_A 1 MSLKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRP 38 (314)
T ss_dssp CCCEEEEEECSGGGHHHHHHHHHSSSEEEEEECCCC--
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCCCc
Confidence 45799999988767778888887788999999988864
No 107
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=25.00 E-value=55 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
.++|+++|+|.=...+++.|++.+.+++++-
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id 36 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVD 36 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 4689999999878889999998888776553
No 108
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=24.90 E-value=45 Score=34.05 Aligned_cols=25 Identities=4% Similarity=0.153 Sum_probs=21.9
Q ss_pred CeEEEEeCCccchHHHHHHHc---CCCC
Q 012211 60 PSLLVFSGGTAFNGVVEELKN---ITTR 84 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~---~~~~ 84 (468)
.+|+|||||.+.-..+..|++ .+.+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~ 30 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAE 30 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCC
Confidence 589999999999999999988 6666
No 109
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=24.84 E-value=45 Score=31.49 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=25.0
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-.++..|++...+++.|
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~li 37 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLF 37 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 48999999999999999999888776555
No 110
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=24.80 E-value=70 Score=28.56 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.3
Q ss_pred HhcCCEEEEcCCCch-hhhcccccchhHHHH---HhcCCCCE--EEEeCC
Q 012211 314 LNAVDCIIYAMGSLF-TSICPSLVLLGIGEI---ISSRSCPK--VLLLNG 357 (468)
Q Consensus 314 I~~ADlIvlGPGSly-TSIiPnLlv~GI~eA---I~~s~a~k--V~I~Nl 357 (468)
..+.|.|||=||-+- ||| .++|| |.....|. |=++|+
T Consensus 68 ~~~~dgiiINpgA~THtSv-------AlrDAl~~l~~~~~P~VEVHiSNi 110 (151)
T 3u80_A 68 ADEKTPVVMNPAAFTHYSY-------ALADAAHMVIDENLPLMEVHISNP 110 (151)
T ss_dssp HHHTCCEEEECTTCCSCCH-------HHHHHHHHHHHTTCCEEEEESSCC
T ss_pred hhcCcEEEECcchhhhhhH-------HHHHHHHHHhhcCCCEEEEEcCCc
Confidence 345699999999998 999 78999 55556665 777888
No 111
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=24.76 E-value=66 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCeE-EEEeCCccch----HHHHHHHcCCCCeEEEEeC
Q 012211 59 QPSL-LVFSGGTAFN----GVVEELKNITTRVAHVLPV 91 (468)
Q Consensus 59 ~pkI-Vv~gGGTGl~----~llrgLk~~~~~lTaIVtv 91 (468)
++|| +.++||.+.. .+++.|++.+.++..|+|-
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 4566 5589998877 5778888888888877754
No 112
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=24.72 E-value=37 Score=35.17 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.8
Q ss_pred CeEEEEeCCccchHHHHHHHc
Q 012211 60 PSLLVFSGGTAFNGVVEELKN 80 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~ 80 (468)
.+|||+|||++...+...|.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~ 28 (526)
T 2pyx_A 8 TEIIIVGGGTAGWITAGLLAA 28 (526)
T ss_dssp CEEEEECCHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 589999999999999999998
No 113
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=24.69 E-value=53 Score=29.85 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=26.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEe
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVt 90 (468)
.+|+|+|||.+.-.....|++...+++.|=.
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~ 34 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ 34 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence 4799999999999999999998887665543
No 114
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=24.68 E-value=1.2e+02 Score=24.56 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHHH-hcCCCCEEEE
Q 012211 306 ANSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLL 354 (468)
Q Consensus 306 ~~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eAI-~~s~a~kV~I 354 (468)
+..+.++..+ ++|+||+|--.. |-+..+++..+.+.+ ++++||+..|
T Consensus 87 ~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 87 PAEAILQAARAEKADLIVMGTRGL--GALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCT--TCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC--chhhhhhhccHHHHHHhcCCCCEEEe
Confidence 3467778887 899999995431 334456666777554 6678888765
No 115
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=24.64 E-value=44 Score=34.12 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.|.-..+..|++.+.+++.|
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~li 40 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASYGAKTLLV 40 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTSCCEEEE
T ss_pred cCCEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence 358999999999999999999888776544
No 116
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=24.61 E-value=40 Score=33.38 Aligned_cols=27 Identities=11% Similarity=-0.110 Sum_probs=22.4
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVA 86 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lT 86 (468)
++|+|+|||-+.-....-|++.+.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~ 27 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEII 27 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 479999999988888888888776644
No 117
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=24.60 E-value=67 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=32.2
Q ss_pred HHHhcCCEEEEcCCCc-hhhhcccccchhHHHHHhcCC-CCE--EEEeCC
Q 012211 312 DQLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRS-CPK--VLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSl-yTSIiPnLlv~GI~eAI~~s~-a~k--V~I~Nl 357 (468)
+|..+.|-|||=||-+ .||| .++|||+... .|. |=++|+
T Consensus 68 ~a~~~~dgiIINpgA~THtSv-------AlrDAl~~v~~~P~VEVHiSNi 110 (156)
T 1gtz_A 68 EARLNHCGIVINPAAYSHTSV-------AILDALNTCDGLPVVEVHISNI 110 (156)
T ss_dssp HHHHHCSEEEEECTTHHHHCH-------HHHHHHHTSTTCCEEEEESSCG
T ss_pred HhhhcCcEEEECchhhccccH-------HHHHHHHhcCCCCEEEEEecCc
Confidence 4445679999999999 5998 5899999887 776 777888
No 118
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.55 E-value=47 Score=29.89 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHhcCCEEEE-cCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC
Q 012211 313 QLNAVDCIIY-AMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 357 (468)
Q Consensus 313 AI~~ADlIvl-GPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl 357 (468)
.|+++|.||+ |||+ ++..+-.+-..++.+++.+..-|..=||..
T Consensus 37 ~l~~~D~lilPG~g~-~~~~~~~~~~~~~i~~~~~~~~PvlGIClG 81 (211)
T 4gud_A 37 VVLAADKLFLPGVGT-ASEAMKNLTERDLIELVKRVEKPLLGICLG 81 (211)
T ss_dssp HHHHCSEEEECCCSC-HHHHHHHHHHTTCHHHHHHCCSCEEEETHH
T ss_pred HHhCCCEEEECCCCC-HHHHHHHHHhcChHHHHHHcCCCEEEEchh
Confidence 4678999988 3344 344555565566777888888899999984
No 119
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=24.52 E-value=45 Score=34.37 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.8
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+...+...|++.+.+++.|
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~li 36 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLL 36 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999887775554
No 120
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=24.51 E-value=45 Score=33.68 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=25.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+.-..+..|++.+.+++.|
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~li 35 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCI 35 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999887776544
No 121
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=24.48 E-value=38 Score=34.40 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=22.9
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVAH 87 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lTa 87 (468)
++|||+|||.+.-..+..|++. ..++|.
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtv 33 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTM 33 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEE
Confidence 6899999999999999999987 444443
No 122
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=24.32 E-value=45 Score=32.90 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.7
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+|+|||||.+.-.....|++.+.+++.|
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vl 30 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLL 30 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 7999999999988999999888765544
No 123
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=24.13 E-value=51 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=25.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-..+..|++...+++.|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li 30 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLM 30 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 37999999999999999999988887765
No 124
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=24.05 E-value=36 Score=32.73 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=17.9
Q ss_pred CeEEEEeCCccchHHHHHHHcCC
Q 012211 60 PSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
++|+|+|||-....+...|.+.+
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G 23 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERY 23 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHhc
Confidence 47999999977667777777765
No 125
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=23.96 E-value=39 Score=30.80 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++++++||||+.-++.-|+++
T Consensus 113 ~~~~~vliagGtGitp~~~~l~~l 136 (243)
T 4eh1_A 113 RERPVVLISAGVGATPMQAILHTL 136 (243)
T ss_dssp CSSCEEEEEEGGGHHHHHHHHHHH
T ss_pred CCCCEEEEEccccHHHHHHHHHHH
Confidence 456899999999998887766654
No 126
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=23.88 E-value=45 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC--CeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT--RVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~--~lTaI 88 (468)
.++|+|+|||-+.-....-|++.+. +++.+
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vl 33 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLV 33 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEE
Confidence 3689999999888888888888876 44443
No 127
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=23.77 E-value=50 Score=31.06 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=24.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-..+..|++.+.+++.|
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li 45 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAIL 45 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999888775544
No 128
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=23.76 E-value=48 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.7
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|+|+|||.+.-.....|.+.+.+++.|
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~ll 56 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVI 56 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 458999999999999999999888775544
No 129
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=23.63 E-value=47 Score=33.75 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=25.0
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.|.-..+..|++...+++.|
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~li 35 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAV 35 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 47999999999999999999988776544
No 130
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=23.55 E-value=46 Score=33.51 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=23.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTR 84 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~ 84 (468)
..+|||+|||.+.-..+..|++.+.+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~ 29 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWE 29 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcC
Confidence 46899999999999999999988764
No 131
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.32 E-value=44 Score=30.76 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcC
Q 012211 308 SAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSR 347 (468)
Q Consensus 308 p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s 347 (468)
++..+.|++||.|+++=|+.+ .++-.|-=.|+.++|++.
T Consensus 71 ~~~~~~l~~ad~I~l~GG~~~-~l~~~L~~~gl~~~l~~~ 109 (206)
T 3l4e_A 71 GEITTKLRKNDFIYVTGGNTF-FLLQELKRTGADKLILEE 109 (206)
T ss_dssp HHHHHHHHHSSEEEECCSCHH-HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCCCHH-HHHHHHHHCChHHHHHHH
Confidence 566789999999999888887 588888888888888874
No 132
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=23.17 E-value=91 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=30.5
Q ss_pred CHHHHHHHhcCCEEEEcCCCchhhhcccccchhHH-HHHhcCCCCEEEE
Q 012211 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG-EIISSRSCPKVLL 354 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~-eAI~~s~a~kV~I 354 (468)
..+.++..+++|+||+|--. -+-+-.++ ..+. +-+++++||++.|
T Consensus 92 ~~~I~~~a~~~dliV~G~~~--~~~~~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 92 VEMVLEEAKDYNLLIIGSSE--NSFLNKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHHHTTCSEEEEECCT--TSTTSSCC-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHHhcCCEEEEeCCC--cchHHHHh-CcHHHHHHhcCCCCEEEe
Confidence 46777888899999999653 23334445 5555 4557788887765
No 133
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=23.17 E-value=61 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+.+|+++|+|.=...+++.|++.+.+++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~ 35 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAV 35 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 457999999888888999999887776544
No 134
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=23.07 E-value=44 Score=32.83 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=22.7
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
++|+|+|||-+.-....-|++.+.+++.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vl 29 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVF 29 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence 47999999988888888888877665444
No 135
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=22.92 E-value=42 Score=33.80 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT 83 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~ 83 (468)
.++|||+|||.+.-..+..|++...
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~ 27 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKP 27 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCc
Confidence 3689999999999999999998743
No 136
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=22.86 E-value=47 Score=35.41 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|||+|||.+...+...|.+.+.+++.|
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~Li 52 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIY 52 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEE
Confidence 358999999999999999999987665444
No 137
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=22.84 E-value=1.2e+02 Score=25.49 Aligned_cols=49 Identities=10% Similarity=-0.003 Sum_probs=32.8
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHHHH-HhcCCCCEEEEeCC
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLLLNG 357 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~eA-I~~s~a~kV~I~Nl 357 (468)
..+.++..+ ++|+||+|--.. +-+-.+++..+.+. +++++||++.|..-
T Consensus 106 ~~~I~~~a~~~~~DlIV~G~~g~--~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 106 WDEIVKVAEEENVSLIILPSRGK--LSLSHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCC--CC--TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCC--CccccceechHHHHHHHhCCCCEEEEccC
Confidence 467777777 899999995432 33445666667755 46778888877643
No 138
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=22.80 E-value=48 Score=33.42 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=25.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.|.-..+..|++.+.+++.|
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~li 32 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIV 32 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999999988776554
No 139
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=22.58 E-value=51 Score=33.44 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=24.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.|.-..+..|++.+.+++.|
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~li 35 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCI 35 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999999987775443
No 140
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=22.47 E-value=66 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEEeCCCCCc
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIVtv~DdGG 96 (468)
.+|||+|||.+.-..+..|++...+...++--.++|+
T Consensus 5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~ 41 (384)
T 2v3a_A 5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGR 41 (384)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCC
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCC
Confidence 5899999999999999999988765444333344443
No 141
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=22.32 E-value=57 Score=32.18 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=25.9
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCC-eEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTR-VAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~-lTaIV 89 (468)
.+|+|+|||-+...+...|++.+.+ ++.|=
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E 35 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLE 35 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 5899999999999999999998877 66554
No 142
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=22.15 E-value=41 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.7
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lTaI 88 (468)
++|+|+|||-+...+...|++. +.+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~ 31 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIV 31 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999999987 5554433
No 143
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=21.96 E-value=54 Score=32.99 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=22.4
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT 83 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~ 83 (468)
..+|+|+|||-+.-.++..|++.+.
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~ 30 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKA 30 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCC
Confidence 4689999999999999999998876
No 144
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=21.81 E-value=52 Score=29.62 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=26.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
+||+++|+|.=...+++.|.+.+.++++|-
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid 30 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIIN 30 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 589999999999999999999888877664
No 145
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=21.76 E-value=1.3e+02 Score=27.04 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=45.7
Q ss_pred CHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhc-----CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHhcc
Q 012211 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISS-----RSCPKVLLLNGLEDRETSGFSASCFVTAITDALNR 381 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~-----s~a~kV~I~Nl~~~gET~g~s~~d~v~al~~~lg~ 381 (468)
..+..+.|++||.||++-=-.+-|+-+. ++..-|-+.. -+.+++.+... ..|...|..+..|++.++.++|.
T Consensus 63 ~~~l~~~i~~AD~iv~~sP~y~~~~~~~--lK~~iD~~~~~~~~~~~gK~~~~~~~-s~g~~gg~~a~~~Lr~~l~~lg~ 139 (193)
T 3svl_A 63 VEALAEQIRQADGVVIVTPEYNYSVPGG--LKNAIDWLSRLPDQPLAGKPVLIQTS-SMGVIGGARCQYHLRQILVFLDA 139 (193)
T ss_dssp HHHHHHHHHHSSEEEEEECCBTTBCCHH--HHHHHHHHHTSTTCTTTTCEEEEEEE-CSSTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCEEEEEecccCCCCCHH--HHHHHHHHhhcCccccCCCeEEEEEe-CCCCcchHHHHHHHHHHHHHCCC
Confidence 4677899999999999865555555432 2333333332 23456655432 22333455688999999988876
Q ss_pred cC
Q 012211 382 AY 383 (468)
Q Consensus 382 ~~ 383 (468)
.+
T Consensus 140 ~v 141 (193)
T 3svl_A 140 MV 141 (193)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 146
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=21.63 E-value=55 Score=33.39 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.1
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAH 87 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTa 87 (468)
.+|+|+|||.|.-..+..|++.+.+++.
T Consensus 26 ~dVvVIGgG~aGl~aA~~la~~G~~V~l 53 (491)
T 3urh_A 26 YDLIVIGSGPGGYVCAIKAAQLGMKVAV 53 (491)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 5899999999999999999998877543
No 147
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=21.60 E-value=43 Score=33.76 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=22.1
Q ss_pred CeEEEEeCCccchHHHHHHHcC--CCCeE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNI--TTRVA 86 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~--~~~lT 86 (468)
.+|||+|||.|.-..+..|++. ..+++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~ 29 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVT 29 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEE
Confidence 3799999999999999999887 44443
No 148
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=21.58 E-value=57 Score=32.72 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
...++|+|+|||-+.-.....|++.+.+++.+
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~ 45 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLL 45 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 34679999999998888888898877665543
No 149
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=21.49 E-value=58 Score=30.31 Aligned_cols=28 Identities=11% Similarity=-0.071 Sum_probs=23.6
Q ss_pred eEEEEeCCccchHHHHHHHcCCC-CeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITT-RVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~-~lTaI 88 (468)
+|+|+|||-+.-..+..|++... +++.|
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~li 31 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLF 31 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEE
Confidence 79999999999999999998877 65444
No 150
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=21.37 E-value=64 Score=31.95 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCC-CeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITT-RVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~-~lTaIV 89 (468)
...|||+|||.+.......|.+.+. +++.|=
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE 37 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLD 37 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEe
Confidence 3489999999988888889998887 665553
No 151
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=21.37 E-value=40 Score=31.31 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++|+++||||+.-++.=++.+
T Consensus 135 ~~~~~vliagGtGiaP~~~~l~~l 158 (270)
T 2cnd_A 135 NARRLAMICGGSGITPMYQIIQAV 158 (270)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred cCCEEEEEeccccHHHHHHHHHHH
Confidence 356899999999999887666543
No 152
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=21.37 E-value=84 Score=25.43 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=25.6
Q ss_pred CHHHHHHHh--cCCEEEEcCCCchhhhcccccchhHH-HHHhcCCCCEEEE
Q 012211 307 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIG-EIISSRSCPKVLL 354 (468)
Q Consensus 307 ~p~ai~AI~--~ADlIvlGPGSlyTSIiPnLlv~GI~-eAI~~s~a~kV~I 354 (468)
..+.++..+ ++|+||+|--.. .+. +.+++++||+..|
T Consensus 98 ~~~I~~~a~~~~~dliV~G~~g~-----------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 98 SEEVKKFVEGKGYELVVWACYPS-----------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHHHHHHTTSCCSEEEECSCCG-----------GGTHHHHHHSSSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-----------chHHHHHHhCCCceEee
Confidence 356677777 799999996544 333 4567778887654
No 153
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=21.31 E-value=1.6e+02 Score=26.11 Aligned_cols=72 Identities=8% Similarity=-0.106 Sum_probs=44.0
Q ss_pred CHHHHHHHhcCCEEEEcCCCchhhhcccccchhHHHHHhc------------CCCCEEEEeCC-CCCCCCCCCCHHHHHH
Q 012211 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISS------------RSCPKVLLLNG-LEDRETSGFSASCFVT 373 (468)
Q Consensus 307 ~p~ai~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~------------s~a~kV~I~Nl-~~~gET~g~s~~d~v~ 373 (468)
..+.++.|++||.||++-=-.+-|+-+. ++..-|-+.. -+.+++++.-. +.. .+..+..+++
T Consensus 58 ~~~~~~~i~~AD~iV~~sP~y~~~~p~~--lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~---g~~~~~~~l~ 132 (192)
T 3fvw_A 58 VAHAREEVQEADAIWIFSPVYNYAIPGP--VKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA---SPEEVFEDYR 132 (192)
T ss_dssp HHHHHHHHHHCSEEEEECCCBTTBCCHH--HHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC------CCSHHHH
T ss_pred HHHHHHHHHhCCEEEEECcccccCCCHH--HHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc---chhHHHHHHH
Confidence 3678899999999999865555555432 2344444432 23456655443 322 2335668999
Q ss_pred HHHHHhcccC
Q 012211 374 AITDALNRAY 383 (468)
Q Consensus 374 al~~~lg~~~ 383 (468)
.++.++|...
T Consensus 133 ~~l~~~G~~~ 142 (192)
T 3fvw_A 133 SLLPFIRMHL 142 (192)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHcCCee
Confidence 9999988754
No 154
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=21.09 E-value=57 Score=33.27 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.+.-..+..|++.+.+++.|
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~li 35 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIV 35 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999999988775443
No 155
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=21.02 E-value=39 Score=31.54 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=18.9
Q ss_pred CCeEEEEeCCccchHHHHHHHcC
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
..++|+|+||||+.-++.-|+.+
T Consensus 146 ~~~~vliagGtGIaP~~~~l~~l 168 (275)
T 1umk_A 146 VKSVGMIAGGTGITPMLQVIRAI 168 (275)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHH
T ss_pred CceEEEEecCccHhHHHHHHHHH
Confidence 46899999999999887766654
No 156
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=20.84 E-value=1.2e+02 Score=24.53 Aligned_cols=46 Identities=11% Similarity=0.219 Sum_probs=29.9
Q ss_pred CHHHHH-HH--hcCCEEEEcCCCchhhhcccccchhHHHH-HhcCCCCEEEE
Q 012211 307 NSAVLD-QL--NAVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLL 354 (468)
Q Consensus 307 ~p~ai~-AI--~~ADlIvlGPGSlyTSIiPnLlv~GI~eA-I~~s~a~kV~I 354 (468)
..+.++ .. .++|+||+|--. -+-+..+++..+.+. +++++||++.|
T Consensus 96 ~~~I~~~~a~~~~~dliV~G~~~--~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 96 KHTIEDYAKQHPEIDLIVLGATG--TNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHHHHHHHSTTCCEEEEESCC--SSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEECCCC--CCCcceEEEcchHHHHhccCCCCEEEe
Confidence 356666 56 689999999543 233445566666654 56778887665
No 157
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=20.76 E-value=58 Score=33.26 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHhcCCEEEEcCCCchhhhcccccchhHHHHHhcCCCCEEEEeCC
Q 012211 312 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 357 (468)
Q Consensus 312 ~AI~~ADlIvlGPGSlyTSIiPnLlv~GI~eAI~~s~a~kV~I~Nl 357 (468)
+.|++||+||-|=|++=..-+--=.+-||.+.-++...|+|.||--
T Consensus 283 ~~l~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~ 328 (383)
T 3cwc_A 283 ACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGS 328 (383)
T ss_dssp HHHHHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hhhcCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEeCC
Confidence 6789999999999998665555666789999888888899999865
No 158
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=20.76 E-value=91 Score=30.76 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
...+++|.++|||.-...+++++++++.++.++
T Consensus 11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~ 43 (389)
T 3q2o_A 11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVL 43 (389)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 346779999999998899999999998776554
No 159
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=20.70 E-value=76 Score=34.17 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=26.3
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
...|||+|||.+.......|.+.+.+++.|=
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlE 294 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYC 294 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEe
Confidence 4689999999999999999999888766553
No 160
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.63 E-value=67 Score=30.20 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=32.5
Q ss_pred CeEEEE--eCCccchHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCC
Q 012211 60 PSLLVF--SGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPA 109 (468)
Q Consensus 60 pkIVv~--gGGTGl~~llrgLk~~--~~~lTaIVtv~DdGGSSG~LR~~~g~~~ 109 (468)
+||+|| |.|+-+..++..|.+- ..++.+||+--+|-.. -+.-+.+|+|.
T Consensus 23 ~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~-~~~A~~~gIp~ 75 (229)
T 3auf_A 23 IRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYG-LERARRAGVDA 75 (229)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHH-HHHHHHTTCEE
T ss_pred cEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHH-HHHHHHcCCCE
Confidence 599999 6666677788888764 4678899986555321 12335666664
No 161
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=20.60 E-value=50 Score=33.52 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.5
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|||+|||.|.-..+..|++.+.+++.|
T Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~li 34 (458)
T 1lvl_A 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLV 34 (458)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999998887775544
No 162
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=20.56 E-value=60 Score=30.96 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=24.7
Q ss_pred eEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 61 kIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
-|+|+|||-+...+...|.+.+.+++.|
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~ 33 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMI 33 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 4999999999999999999998886654
No 163
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.49 E-value=1.8e+02 Score=27.32 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCE-EEEcCCCchhh--hcccccchhHHHHHhcCCCCEEEEeCCCC---CCCCC---CCCHHHHHHHHHHH
Q 012211 308 SAVLDQLNAVDC-IIYAMGSLFTS--ICPSLVLLGIGEIISSRSCPKVLLLNGLE---DRETS---GFSASCFVTAITDA 378 (468)
Q Consensus 308 p~ai~AI~~ADl-IvlGPGSlyTS--IiPnLlv~GI~eAI~~s~a~kV~I~Nl~~---~gET~---g~s~~d~v~al~~~ 378 (468)
..+.+++++||+ ||+| || +.|.- ++....++. ..++++.|... +...+ ...+.+-+..|.+.
T Consensus 172 ~~a~~~~~~adl~lviG-----TSl~V~P~~---~l~~~a~~~-g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~ 242 (246)
T 1yc5_A 172 REAIGLSSRASLMIVLG-----SSLVVYPAA---ELPLITVRS-GGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE 242 (246)
T ss_dssp HHHHHHHHHCSEEEEES-----CCSCEETGG---GHHHHHHHH-TCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEC-----CCCcchhHH---HHHHHHHHc-CCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHH
Confidence 567889999994 5555 44 23432 232222222 34566778732 11121 34677778888777
Q ss_pred hc
Q 012211 379 LN 380 (468)
Q Consensus 379 lg 380 (468)
||
T Consensus 243 lg 244 (246)
T 1yc5_A 243 GG 244 (246)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 164
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=20.46 E-value=60 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=24.6
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.+.-.....|++.+.+++.|
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~li 32 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIV 32 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 37999999999999999999988775544
No 165
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=20.45 E-value=64 Score=33.30 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCCCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 56 ~~~~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
+....+|+|+|||-+.-.+...|++.+.+++.|
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~li 121 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLV 121 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence 345679999999999999999999887665444
No 166
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=20.40 E-value=60 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.3
Q ss_pred CeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 60 pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
.+|+|+|||.|.-..+..|++.+.+++.|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~li 30 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVV 30 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEE
Confidence 37999999999999999999887775433
No 167
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=20.38 E-value=67 Score=29.66 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=29.1
Q ss_pred CCHHHHHHHhcCCEEEEcCC---Cchh---hhcc--cccchhHHHHHhcCC
Q 012211 306 ANSAVLDQLNAVDCIIYAMG---SLFT---SICP--SLVLLGIGEIISSRS 348 (468)
Q Consensus 306 ~~p~ai~AI~~ADlIvlGPG---SlyT---SIiP--nLlv~GI~eAI~~s~ 348 (468)
.+|+.+..+.+.-.+|++|- .+|. |+++ .+++.-|.+|+....
T Consensus 138 ~h~~Nm~~L~~~G~~i~~P~~~~~~~~~p~s~~a~~~~i~~tv~~al~~~~ 188 (201)
T 3lqk_A 138 LNGINIMRLMATKNIYFIPFGQDNPQVKPNSLVARMEALPETIEAALRGQQ 188 (201)
T ss_dssp TTHHHHHHHHTSTTEEECCEEESCTTTCTTCEEECGGGHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHHCCCEEECCCCccccccCCCcccCCHHHHHHHHHHHHhcCC
Confidence 35668888888888888887 6665 5553 345556666666554
No 168
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=20.28 E-value=47 Score=30.99 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.1
Q ss_pred CCCeEEEEeCCccchHHHHHHHcC
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~ 81 (468)
...++++++||||+.-++.=++.+
T Consensus 121 ~~~~~vliagG~GitP~~~~l~~l 144 (271)
T 4fk8_A 121 PGKTLWMLSTGTGLAPFMSIIRDP 144 (271)
T ss_dssp CCSEEEEEECGGGGHHHHHHTTCH
T ss_pred CCCeEEEEECCEEHHHHHHHHHHH
Confidence 456899999999999998877654
No 169
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=20.13 E-value=59 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCccchHHHHHHHcCCCCeEEEE
Q 012211 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (468)
Q Consensus 58 ~~pkIVv~gGGTGl~~llrgLk~~~~~lTaIV 89 (468)
.+.+|+|+|||--.-.+...|++++.++|.|.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~ 182 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILH 182 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEEC
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCCeeeeec
Confidence 46799999999988899999999999988664
No 170
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=20.11 E-value=50 Score=33.82 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.3
Q ss_pred CCCCeEEEEeCCccchHHHHHHHcCC
Q 012211 57 HTQPSLLVFSGGTAFNGVVEELKNIT 82 (468)
Q Consensus 57 ~~~pkIVv~gGGTGl~~llrgLk~~~ 82 (468)
....+|||+|||.+.-..+..|++..
T Consensus 4 ~~~~~vvIIG~G~aGl~aA~~l~~~g 29 (460)
T 1cjc_A 4 EQTPQICVVGSGPAGFYTAQHLLKHH 29 (460)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHC
T ss_pred CCCceEEEECcCHHHHHHHHHHHhcC
Confidence 34569999999999999999898876
No 171
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=20.08 E-value=65 Score=30.92 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=24.2
Q ss_pred CCeEEEEeCCccchHHHHHHHcCCCCeEEE
Q 012211 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (468)
Q Consensus 59 ~pkIVv~gGGTGl~~llrgLk~~~~~lTaI 88 (468)
..+|||+|||-+.-..+..|++...+++.|
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li 43 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRII 43 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999998877765443
Done!