BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012212
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 239/476 (50%), Gaps = 24/476 (5%)
Query: 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQ 61
+R+PHV++IPYP QGH+ PL KLA + R +T VNT++ HK+++ S KA D +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 62 IKLVTIPDGLELQAAD---REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD 118
+IPDGL D +D L +SV + +L+ ++N S + P+ C+++D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 119 VTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLS- 177
+ ++ AE + SL + F +E GII + L +G +
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 178 DEIPAWK--RNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDS------ 229
D IP K R + F + I+L V V I+ N+ EL+S
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL 245
Query: 230 ----PACDXXXXXXXXXXXXASNHSGD-LDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSV 284
P+ H D LD N W ED+ CL WL+ + SVVYV FGS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 285 AVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEK 344
V++ +Q E A GL + +K FLW+IR D + G F F +++RG I W PQ+K
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDK 365
Query: 345 VLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADEN 404
VL H S+ F++HCGWNST E + GVP LCWP+F+DQ + +IC W+IG++ D N
Sbjct: 366 VLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI--DTN 423
Query: 405 GIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457
+ R+E+ + + ++ D ++ +++LK+ A ++ GG S+ N I D+
Sbjct: 424 --VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 217/478 (45%), Gaps = 54/478 (11%)
Query: 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIASLQEKAEDS-S 59
S+ PHV +IP P GH+ PL++ A ++ + VT V + + Q DS
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV---IAGEGPPSKAQRTVLDSLP 60
Query: 60 SQIKLVTIP--DGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIA 117
S I V +P D +L ++ R + ++ +V R+ LR + + + ++
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIES-RISLTVTRS-NPELRKVFDSFVEGGRLP--TALVV 116
Query: 118 DVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEA------GIIDPNGFAILND 171
D+ A +VA + P L+ L PKL E + +P ++
Sbjct: 117 DLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEP----LMLP 172
Query: 172 GLISLSDEI---PAWKRNE--YTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYE 226
G + ++ + PA R + Y W + K GI+ ++ N++
Sbjct: 173 GCVPVAGKDFLDPAQDRKDDAYKWLLHNT-KRYKEAEGILVNTFFELE------PNAIKA 225
Query: 227 LDSPACDXXXXXXXXXXXXASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV 286
L P D +E+S CL WLD Q + SV+YV+FGS
Sbjct: 226 LQEPGLDKPPVYPVGPLVNIGKQEAK-----QTEESECLKWLDNQPLGSVLYVSFGSGGT 280
Query: 287 LSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKF------------PDGFIERVSNRG 334
L+ +Q ELALGL ++ FLWVIR + + F P GF+ER RG
Sbjct: 281 LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRG 340
Query: 335 KIVE-WAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAW 393
++ WAPQ +VL H S F++HCGWNST+E + G+P + WP +++Q N + E
Sbjct: 341 FVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDI 400
Query: 394 KIGLQFFADENGIITRQEIQRKVLTLLKNDD---IRSNSLKLKEVARKSLLGGGSSFR 448
+ L+ A ++G++ R+E+ R V L++ ++ +R+ +LKE A + L G+S +
Sbjct: 401 RAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTK 458
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 209/466 (44%), Gaps = 36/466 (7%)
Query: 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL-QEKAEDSSS 60
+ PHV V+ +P H APL+ + ++A A V + F + AS+ +
Sbjct: 5 TTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHA--VFSFFSTSQSNASIFHDSMHTMQC 62
Query: 61 QIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRD-LIEKINQSNDCEPIRCVIADV 119
IK I DG+ P + E RA R ++ + ++ P+ C++AD
Sbjct: 63 NIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETG--RPVSCLVADA 120
Query: 120 TVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDE 179
+ A ++A MG+A GP SL+ + ++ E I +G D L++
Sbjct: 121 FIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREK--IGVSGIQGREDELLNF--- 175
Query: 180 IPAWKRNEYTWSFPDEPSEQKILLGIICAVI--------QAVKISNWIINNSVYELDSPA 231
IP + + ++ I+ G + ++ Q + + + NS ELD
Sbjct: 176 IPGMSKVRF------RDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSL 229
Query: 232 CDXXXXXXXXXXXXASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQ 291
+ + + CL WL E+ SVVY++FG+V +
Sbjct: 230 TNDLKSKLKTYLNIGP-FNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAE 288
Query: 292 FAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSV 351
L+ LE+ + PF+W +R + +R P+GF+E+ G +V WAPQ +VL H +V
Sbjct: 289 VVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAV 344
Query: 352 ACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQE 411
F++HCGWNS E ++ GVP +C P+F DQ N + + +IG++ E G+ T+
Sbjct: 345 GAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSG 401
Query: 412 IQR---KVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFI 454
+ ++L+ K +R N L+E A +++ GSS NF + +
Sbjct: 402 LMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Query: 259 SEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGS 318
S++ CL WLD+ SVVY++FGSV + LA LE PF+W R D
Sbjct: 258 SDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----P 313
Query: 319 RAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY 378
+ K P GF+ER +GKIV WAPQ ++L HSSV F++H GWNS +E + GVP + P+
Sbjct: 314 KEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPF 373
Query: 379 FSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKV-LTLL--KNDDIRSNSLKLKEV 435
F DQ N +IG+ +NG++T++ I++ + LT+ K +R +KLKE
Sbjct: 374 FGDQGLNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKES 430
Query: 436 ARKSLLGGGSSFRNFESFI 454
A K++ G+S +F + I
Sbjct: 431 AFKAVEQNGTSAMDFTTLI 449
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLV 65
HV V+ +P H APL+ L KIA A KVT +L ++ + IK
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTN--DTLFSRSNEFLPNIKYY 72
Query: 66 TIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSAL 125
+ DGL +P + +AM+ + +I++ + + I C++ D
Sbjct: 73 NVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEA-VAETGKNITCLVTDAFFWFGA 131
Query: 126 EVAESMGIARAAVVPFGPGSL 146
++AE M + GP SL
Sbjct: 132 DLAEEMHAKWVPLWTAGPHSL 152
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 218/483 (45%), Gaps = 53/483 (10%)
Query: 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIA--ERAIKVTVVNTQFIHKKIIASLQEKAEDS 58
+++ ++ IP P GH+A ++ A + ++ + +TV +F S + S
Sbjct: 6 INKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS 65
Query: 59 SSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD 118
QI+L+ +P+ P +L +S + L LI + + I+ ++++
Sbjct: 66 QPQIQLIDLPEV-------EPPPQELLKSPEFYILTFLESLIPHVKAT-----IKTILSN 113
Query: 119 VTVG--------SALEVAESMGIARAAVVPFGPG--SLALSLQFPKLLEAGIIDPNGFAI 168
VG S ++V GI + G SL LSL+ ++ E +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 169 LNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELD 228
LN + +S+++P + PD + + + + + II N+ +L+
Sbjct: 174 LN--IPGISNQVP-------SNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLE 224
Query: 229 SPACDXXXXXXXXXX-XXASNHSGDLDGN-----FWSEDSSCLSWLDEQAIRSVVYVAFG 282
+ D A DL G ++ L WLDEQ +SVV++ FG
Sbjct: 225 QSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 283 SVAV-LSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAK-FPDGFIE--RVSNRGKIVE 338
S+ V Q E+ALGL+ FLW N + K FP+GF+E + +G I
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLW------SNSAEKKVFPEGFLEWMELEGKGMICG 338
Query: 339 WAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ 398
WAPQ +VL H ++ F+SHCGWNS +E + GVP L WP +++Q N + + W +GL
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 399 FFADE---NGIITRQEIQRKVLTLLKNDDIRSNSLK-LKEVARKSLLGGGSSFRNFESFI 454
D + ++ +EI++ + L+ D I ++ +KE++R +++ GGSS + I
Sbjct: 399 LRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
Query: 455 SDI 457
DI
Sbjct: 459 DDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 218/483 (45%), Gaps = 53/483 (10%)
Query: 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIA--ERAIKVTVVNTQFIHKKIIASLQEKAEDS 58
+++ ++ IP P GH+A ++ A + ++ + +TV +F S + S
Sbjct: 6 INKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS 65
Query: 59 SSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD 118
QI+L+ +P+ P +L +S + L LI + + I+ ++++
Sbjct: 66 QPQIQLIDLPEV-------EPPPQELLKSPEFYILTFLESLIPHVKAT-----IKTILSN 113
Query: 119 VTVG--------SALEVAESMGIARAAVVPFGPG--SLALSLQFPKLLEAGIIDPNGFAI 168
VG S ++V GI + G SL LSL+ ++ E +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 169 LNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELD 228
LN + +S+++P + PD + + + + + II N+ +L+
Sbjct: 174 LN--IPGISNQVP-------SNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLE 224
Query: 229 SPACDXXXXXXXXXX-XXASNHSGDLDGNF-----WSEDSSCLSWLDEQAIRSVVYVAFG 282
+ D A DL G ++ L WLDEQ +SVV++ FG
Sbjct: 225 QSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 283 SVAV-LSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAK-FPDGFIE--RVSNRGKIVE 338
S+ V Q E+ALGL+ FLW N + K FP+GF+E + +G I
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLW------SNSAEKKVFPEGFLEWMELEGKGMICG 338
Query: 339 WAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ 398
WAPQ +VL H ++ F+SHCGWNS +E + GVP L WP +++Q N + + W +GL
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 399 FFADE---NGIITRQEIQRKVLTLLKNDDIRSNSLK-LKEVARKSLLGGGSSFRNFESFI 454
D + ++ +EI++ + L+ D I ++ +KE++R +++ GGSS + I
Sbjct: 399 LRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
Query: 455 SDI 457
DI
Sbjct: 459 DDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 335 KIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQN 385
++ +W PQ +LGH FI+H G N E + G+P + P F+DQ N
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 335 KIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394
++ +W PQ +L +S FI+H G STME LS VP + P ++Q N I E
Sbjct: 308 EVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LG 364
Query: 395 IGLQFFADENGIITRQEIQRKVLTLLKN 422
+G D+ +T ++++ VL + +
Sbjct: 365 LGRHIPRDQ---VTAEKLREAVLAVASD 389
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 335 KIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394
++VEW P +L + I H G + + L+ GVP P+ S Q NR+ +
Sbjct: 291 RVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT---G 345
Query: 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKE 434
+G+ F A E G + ++ +R LL + +R +L++++
Sbjct: 346 LGIGFDA-EAGSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 335 KIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394
++VEW P +L + I H G + + L+ GVP P+ S Q NR+ +
Sbjct: 291 RVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT---G 345
Query: 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKE 434
+G+ F A E G + ++ +R LL + +R +L++++
Sbjct: 346 LGIGFDA-EAGSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 335 KIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYI 389
++ +W PQ +L + + F++H G + EGL+ P + P DQ+ N + +
Sbjct: 286 EVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 11/127 (8%)
Query: 258 WSEDSSCLSWLDEQ-AIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMN 316
++E +WL + R +VY+ G+ + + + GL L D +
Sbjct: 225 FAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDA--------DVLV 276
Query: 317 GSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCW 376
S + V ++ W PQ +L H V + H G +T+ L GVP L +
Sbjct: 277 ASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSF 334
Query: 377 PYFSDQY 383
P+ D +
Sbjct: 335 PWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQE--------- 53
RQ H+L GHV P + L +++A R ++T V T ++ A+ E
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFD 62
Query: 54 --------KAEDSSSQIKLVTIPDGLELQAADRE 79
K ED+ +Q+ LV + + + + A E
Sbjct: 63 TFHVPEVVKQEDAETQLHLVYVRENVAILRAAEE 96
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 338 EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQ 382
+W P VL H+ AC ++H + +E + GVP + P+F+ +
Sbjct: 287 QWIPFHSVLAHAR-AC-LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 111 PIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSL 146
PIRC + D + ALEVAE G FGPGSL
Sbjct: 192 PIRCELFDQNLKLALEVAEKAGT-------FGPGSL 220
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 111 PIRCVIADVTVGSALEVAESMGIARAAVVPFGPGS 145
PIRC + D + ALEVAE G FGPGS
Sbjct: 192 PIRCELFDQNLKLALEVAEKAGT-------FGPGS 219
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLG 204
LL A ++ PN A D +L+ +I + R ++ PD+PS I++G
Sbjct: 336 LLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVG 385
>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
Human Methionine Synthase Reductase
Length = 539
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLG 204
LL A ++ PN A D +L+ +I + R ++ PD+PS I++G
Sbjct: 336 LLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVG 385
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 128 AESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRN 186
AE G R V G G++ F AG I P+ ILND S+S+ + A +
Sbjct: 137 AEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEXSISENVGALNNH 195
>pdb|1WZU|A Chain A, Crystal Structure Of Quinolinate Synthase (Nada)
Length = 300
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 9 VIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAE 56
+IP P++GH K ERA K+ IH + I +QEKA+
Sbjct: 161 IIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMIHPECIPEVQEKAD 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,211,127
Number of Sequences: 62578
Number of extensions: 522472
Number of successful extensions: 1175
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 27
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)