Query 012212
Match_columns 468
No_of_seqs 121 out of 1298
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 00:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 3E-66 6.6E-71 504.3 45.8 436 1-458 3-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.3E-64 1.6E-68 486.0 44.2 434 3-459 6-450 (451)
3 PLN02173 UDP-glucosyl transfer 100.0 1E-63 2.2E-68 482.5 43.7 427 1-458 1-447 (449)
4 PLN02555 limonoid glucosyltran 100.0 1.8E-63 3.9E-68 484.7 44.6 448 4-460 7-470 (480)
5 PLN02207 UDP-glycosyltransfera 100.0 2.1E-63 4.5E-68 482.0 44.7 444 3-460 2-466 (468)
6 PLN02210 UDP-glucosyl transfer 100.0 4.4E-63 9.6E-68 482.5 43.6 431 3-459 7-455 (456)
7 PLN02152 indole-3-acetate beta 100.0 5.9E-63 1.3E-67 478.0 44.0 432 3-457 2-454 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.8E-63 2.1E-67 481.4 43.1 445 3-461 8-473 (477)
9 PLN02554 UDP-glycosyltransfera 100.0 2.4E-62 5.2E-67 482.5 43.3 443 4-462 2-481 (481)
10 PLN02992 coniferyl-alcohol glu 100.0 1.3E-61 2.8E-66 470.3 43.4 429 3-461 4-471 (481)
11 PLN02670 transferase, transfer 100.0 1E-61 2.2E-66 470.7 41.5 436 3-461 5-467 (472)
12 PLN02448 UDP-glycosyltransfera 100.0 1.9E-61 4.2E-66 474.5 43.8 432 3-459 9-457 (459)
13 PLN03007 UDP-glucosyltransfera 100.0 3.7E-61 8E-66 474.8 43.8 444 1-460 1-481 (482)
14 PLN00164 glucosyltransferase; 100.0 8.4E-61 1.8E-65 469.5 43.8 439 3-461 2-475 (480)
15 PLN02208 glycosyltransferase f 100.0 1.2E-60 2.6E-65 462.3 41.7 415 1-460 1-440 (442)
16 PLN03004 UDP-glycosyltransfera 100.0 9.4E-61 2E-65 462.2 40.5 430 4-448 3-450 (451)
17 PLN02167 UDP-glycosyltransfera 100.0 2.5E-60 5.4E-65 467.5 43.1 447 2-459 1-472 (475)
18 PLN02764 glycosyltransferase f 100.0 4.4E-60 9.6E-65 455.5 43.2 423 3-464 4-450 (453)
19 PLN02534 UDP-glycosyltransfera 100.0 1.4E-59 3E-64 458.1 43.9 442 1-460 5-487 (491)
20 PLN03015 UDP-glucosyl transfer 100.0 1.5E-59 3.2E-64 453.1 42.7 434 3-457 2-466 (470)
21 PLN00414 glycosyltransferase f 100.0 1.3E-59 2.7E-64 455.7 41.4 418 1-462 1-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.9E-52 4.1E-57 413.3 31.4 394 4-439 20-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-52 2.4E-57 423.0 11.4 392 5-439 1-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2E-45 4.4E-50 358.8 34.4 371 11-455 2-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7E-45 1.5E-49 356.8 26.9 365 5-438 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 3.6E-44 7.8E-49 345.2 21.6 394 4-459 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-41 3.6E-46 342.1 22.4 413 4-439 5-439 (496)
28 PF13528 Glyco_trans_1_3: Glyc 100.0 3.9E-26 8.5E-31 216.9 27.2 306 5-419 1-317 (318)
29 PRK12446 undecaprenyldiphospho 100.0 1E-25 2.2E-30 214.7 28.7 323 4-431 1-335 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.1E-23 4.6E-28 197.6 25.6 309 6-426 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 4E-21 8.7E-26 180.6 28.7 323 5-438 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.9 1E-20 2.2E-25 182.8 27.9 345 4-458 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.5E-19 9.7E-24 171.0 25.8 324 6-433 1-335 (350)
34 COG4671 Predicted glycosyl tra 99.8 2E-18 4.3E-23 154.2 27.2 329 2-424 7-367 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.2E-16 2.7E-21 153.9 25.5 320 5-433 1-332 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 1E-16 2.2E-21 155.1 22.0 351 5-454 6-383 (385)
37 PRK13609 diacylglycerol glucos 99.8 1.4E-15 3.1E-20 148.1 28.8 141 273-431 201-347 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 8.5E-16 1.9E-20 141.8 21.8 103 275-388 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 2E-14 4.3E-19 140.2 22.6 350 4-457 1-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 5.3E-14 1.1E-18 137.0 24.5 163 273-457 201-369 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 1.1E-16 2.4E-21 136.7 -0.6 141 276-427 1-149 (167)
42 PLN02605 monogalactosyldiacylg 99.6 2.9E-12 6.4E-17 124.6 26.1 94 332-438 265-361 (382)
43 TIGR03492 conserved hypothetic 99.5 2.8E-11 6.1E-16 117.4 25.0 334 14-430 6-372 (396)
44 cd03814 GT1_like_2 This family 99.5 1.5E-10 3.2E-15 111.8 29.4 110 330-455 245-361 (364)
45 PF03033 Glyco_transf_28: Glyc 99.4 1.3E-13 2.9E-18 113.9 5.4 126 7-144 1-133 (139)
46 COG3980 spsG Spore coat polysa 99.4 2E-11 4.4E-16 106.5 17.7 144 276-435 160-306 (318)
47 PLN02871 UDP-sulfoquinovose:DA 99.4 1.3E-09 2.7E-14 109.2 30.9 137 276-433 264-411 (465)
48 cd03823 GT1_ExpE7_like This fa 99.4 7E-10 1.5E-14 106.8 27.7 90 331-432 242-339 (359)
49 cd03818 GT1_ExpC_like This fam 99.4 2.8E-09 6.1E-14 104.5 31.7 87 331-429 280-373 (396)
50 cd03794 GT1_wbuB_like This fam 99.3 1.2E-09 2.5E-14 106.4 25.0 350 6-435 1-378 (394)
51 cd03800 GT1_Sucrose_synthase T 99.3 2.2E-09 4.8E-14 105.3 27.0 88 331-430 282-376 (398)
52 cd03801 GT1_YqgM_like This fam 99.3 5.9E-09 1.3E-13 100.3 29.6 319 15-433 14-352 (374)
53 cd04962 GT1_like_5 This family 99.3 9E-09 1.9E-13 100.0 30.7 88 331-430 252-344 (371)
54 cd03808 GT1_cap1E_like This fa 99.3 6.6E-09 1.4E-13 99.7 28.9 326 6-433 1-340 (359)
55 cd03816 GT1_ALG1_like This fam 99.3 1.9E-08 4.1E-13 99.0 31.9 83 332-428 294-390 (415)
56 cd03817 GT1_UGDG_like This fam 99.3 6E-09 1.3E-13 100.8 27.5 83 331-426 258-347 (374)
57 PRK10307 putative glycosyl tra 99.2 8.7E-08 1.9E-12 94.5 35.2 118 332-462 284-410 (412)
58 PRK05749 3-deoxy-D-manno-octul 99.2 1.2E-08 2.6E-13 101.0 28.4 84 343-436 314-402 (425)
59 cd03825 GT1_wcfI_like This fam 99.2 3.2E-08 6.9E-13 95.8 29.0 113 331-458 243-363 (365)
60 TIGR03449 mycothiol_MshA UDP-N 99.2 8E-08 1.7E-12 94.6 31.1 113 331-459 282-401 (405)
61 cd03795 GT1_like_4 This family 99.2 3.4E-08 7.5E-13 95.2 27.7 134 276-431 192-341 (357)
62 cd03798 GT1_wlbH_like This fam 99.2 8.1E-08 1.7E-12 92.7 29.3 83 331-425 258-347 (377)
63 TIGR00236 wecB UDP-N-acetylglu 99.2 1.9E-09 4.1E-14 104.5 17.7 136 275-431 198-343 (365)
64 cd03805 GT1_ALG2_like This fam 99.1 2.1E-07 4.4E-12 91.2 31.3 85 331-428 279-370 (392)
65 cd03820 GT1_amsD_like This fam 99.1 7.8E-08 1.7E-12 91.8 27.6 94 331-436 234-333 (348)
66 TIGR02468 sucrsPsyn_pln sucros 99.1 1.3E-07 2.8E-12 99.5 30.6 404 3-460 168-671 (1050)
67 TIGR02472 sucr_P_syn_N sucrose 99.1 1.8E-07 3.8E-12 93.0 28.2 87 331-427 316-411 (439)
68 PF04007 DUF354: Protein of un 99.1 3.1E-07 6.8E-12 85.9 28.0 302 5-420 1-308 (335)
69 cd03821 GT1_Bme6_like This fam 99.1 4.2E-07 9E-12 87.8 30.3 92 331-436 261-359 (375)
70 cd03796 GT1_PIG-A_like This fa 99.1 4.3E-07 9.2E-12 89.2 29.6 114 331-461 249-369 (398)
71 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 1.4E-08 3.1E-13 98.3 17.6 136 274-429 198-344 (363)
72 cd03811 GT1_WabH_like This fam 99.0 3E-07 6.6E-12 87.8 24.9 89 331-431 245-341 (353)
73 cd03799 GT1_amsK_like This is 99.0 7.7E-07 1.7E-11 85.7 27.6 86 331-428 235-333 (355)
74 cd03819 GT1_WavL_like This fam 99.0 1.9E-06 4.2E-11 83.0 29.7 85 331-427 245-336 (355)
75 PLN02275 transferase, transfer 99.0 1.4E-06 3E-11 84.6 28.3 128 1-140 1-134 (371)
76 cd03822 GT1_ecORF704_like This 98.9 4.9E-07 1.1E-11 87.3 24.7 87 331-430 246-342 (366)
77 cd05844 GT1_like_7 Glycosyltra 98.9 5.1E-07 1.1E-11 87.5 24.7 87 331-429 244-343 (367)
78 PRK09922 UDP-D-galactose:(gluc 98.9 3.2E-07 7E-12 88.7 23.1 134 276-425 181-327 (359)
79 PRK14089 ipid-A-disaccharide s 98.9 3.3E-07 7.1E-12 86.5 22.2 144 275-436 168-332 (347)
80 cd03812 GT1_CapH_like This fam 98.9 1.5E-06 3.3E-11 83.9 27.5 88 331-431 248-340 (358)
81 cd03802 GT1_AviGT4_like This f 98.9 1.1E-06 2.4E-11 83.9 26.0 126 278-423 174-309 (335)
82 cd04955 GT1_like_6 This family 98.9 1.7E-06 3.6E-11 83.7 27.5 130 278-429 196-337 (363)
83 TIGR02470 sucr_synth sucrose s 98.9 1.2E-05 2.7E-10 83.0 33.2 92 331-432 618-723 (784)
84 PRK01021 lpxB lipid-A-disaccha 98.9 2.2E-06 4.7E-11 85.1 25.7 217 217-452 363-601 (608)
85 PLN02949 transferase, transfer 98.8 1.2E-05 2.5E-10 79.8 30.2 111 331-461 334-458 (463)
86 cd04951 GT1_WbdM_like This fam 98.8 2.2E-06 4.8E-11 82.7 24.7 88 331-432 244-337 (360)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.8 5.7E-06 1.2E-10 77.7 25.8 321 7-438 51-402 (419)
88 cd03807 GT1_WbnK_like This fam 98.8 1.5E-05 3.2E-10 76.7 29.5 82 331-426 250-336 (365)
89 TIGR02149 glgA_Coryne glycogen 98.8 1.4E-05 3.1E-10 78.1 28.2 141 276-429 202-359 (388)
90 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 1.4E-06 3E-11 83.9 20.2 134 274-427 201-343 (365)
91 TIGR03087 stp1 sugar transfera 98.7 1.3E-05 2.8E-10 78.7 26.9 87 331-431 279-371 (397)
92 cd03809 GT1_mtfB_like This fam 98.7 4.5E-06 9.8E-11 80.5 22.8 92 330-435 251-349 (365)
93 PRK15179 Vi polysaccharide bio 98.7 4.1E-05 8.8E-10 79.1 30.1 93 331-433 573-674 (694)
94 TIGR03088 stp2 sugar transfera 98.7 0.00015 3.3E-09 70.5 32.9 85 331-427 254-343 (374)
95 cd03806 GT1_ALG11_like This fa 98.7 2.7E-05 5.8E-10 76.8 27.6 81 331-424 304-394 (419)
96 PLN02846 digalactosyldiacylgly 98.6 3.9E-05 8.5E-10 75.2 27.0 71 338-423 290-364 (462)
97 cd03792 GT1_Trehalose_phosphor 98.6 6.5E-05 1.4E-09 73.0 28.4 111 331-458 251-370 (372)
98 PF02684 LpxB: Lipid-A-disacch 98.6 1.7E-05 3.8E-10 75.4 22.2 207 216-446 134-364 (373)
99 cd03804 GT1_wbaZ_like This fam 98.5 1E-05 2.2E-10 77.9 19.7 136 278-435 198-340 (351)
100 PF02350 Epimerase_2: UDP-N-ac 98.5 7.3E-07 1.6E-11 84.9 10.0 139 272-431 178-327 (346)
101 KOG3349 Predicted glycosyltran 98.5 8.3E-07 1.8E-11 70.1 8.4 118 275-400 4-133 (170)
102 COG0381 WecB UDP-N-acetylgluco 98.5 7.6E-06 1.7E-10 76.3 15.5 140 275-433 205-352 (383)
103 cd04950 GT1_like_1 Glycosyltra 98.4 0.0002 4.3E-09 69.6 26.1 79 331-423 253-341 (373)
104 PLN00142 sucrose synthase 98.4 0.0003 6.4E-09 73.1 28.0 92 331-432 641-746 (815)
105 PRK00654 glgA glycogen synthas 98.4 0.00019 4.2E-09 71.9 25.8 117 330-460 335-463 (466)
106 COG0763 LpxB Lipid A disacchar 98.4 0.00014 3E-09 67.9 22.1 348 4-457 1-379 (381)
107 TIGR02095 glgA glycogen/starch 98.3 0.00056 1.2E-08 68.8 25.6 87 330-428 344-447 (473)
108 PRK10017 colanic acid biosynth 98.2 0.0089 1.9E-07 58.5 30.4 175 266-457 226-422 (426)
109 TIGR02918 accessory Sec system 98.2 0.00053 1.1E-08 68.9 22.1 100 331-436 375-484 (500)
110 PF13844 Glyco_transf_41: Glyc 98.1 6.5E-05 1.4E-09 73.0 14.9 153 273-438 283-447 (468)
111 cd03791 GT1_Glycogen_synthase_ 98.1 0.001 2.2E-08 67.1 23.6 98 331-436 350-456 (476)
112 PRK15427 colanic acid biosynth 98.0 0.00019 4E-09 70.5 15.9 86 331-428 278-377 (406)
113 PLN02501 digalactosyldiacylgly 98.0 0.0032 7E-08 63.9 24.2 79 333-426 602-685 (794)
114 cd03813 GT1_like_3 This family 98.0 0.0089 1.9E-07 60.1 27.8 90 331-431 353-451 (475)
115 cd04949 GT1_gtfA_like This fam 98.0 0.00054 1.2E-08 66.5 18.6 87 331-426 260-349 (372)
116 cd04946 GT1_AmsK_like This fam 98.0 0.00027 5.9E-09 69.5 15.9 89 331-428 288-383 (407)
117 PF00534 Glycos_transf_1: Glyc 98.0 0.0001 2.2E-09 62.9 11.3 92 331-434 72-170 (172)
118 COG5017 Uncharacterized conser 97.9 0.00014 3E-09 56.7 9.7 108 277-400 2-122 (161)
119 COG1817 Uncharacterized protei 97.9 0.017 3.6E-07 52.4 24.4 107 13-144 8-116 (346)
120 PRK15484 lipopolysaccharide 1, 97.8 0.001 2.2E-08 64.8 17.2 86 330-426 255-348 (380)
121 PRK15490 Vi polysaccharide bio 97.8 0.015 3.2E-07 58.1 24.2 65 331-402 454-523 (578)
122 cd01635 Glycosyltransferase_GT 97.7 0.0051 1.1E-07 54.6 17.8 48 331-380 160-215 (229)
123 PRK10125 putative glycosyl tra 97.6 0.079 1.7E-06 52.0 28.8 101 290-416 256-365 (405)
124 PLN02316 synthase/transferase 97.6 0.098 2.1E-06 56.5 28.8 119 331-459 899-1033(1036)
125 TIGR02193 heptsyl_trn_I lipopo 97.5 0.025 5.3E-07 53.7 21.0 135 273-420 178-319 (319)
126 PF13692 Glyco_trans_1_4: Glyc 97.4 0.00061 1.3E-08 55.4 6.9 80 331-422 52-135 (135)
127 PF13477 Glyco_trans_4_2: Glyc 97.0 0.012 2.5E-07 48.1 11.3 103 6-140 1-107 (139)
128 PRK09814 beta-1,6-galactofuran 96.9 0.0039 8.4E-08 59.5 8.8 108 331-455 206-331 (333)
129 PRK10422 lipopolysaccharide co 96.9 0.4 8.6E-06 46.1 22.1 109 1-137 1-113 (352)
130 COG3914 Spy Predicted O-linked 96.8 0.04 8.7E-07 54.2 14.1 133 273-417 428-573 (620)
131 KOG4626 O-linked N-acetylgluco 96.7 0.04 8.7E-07 54.5 13.2 150 273-439 757-918 (966)
132 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.43 9.2E-06 44.8 19.4 101 274-380 146-259 (311)
133 PRK10916 ADP-heptose:LPS hepto 96.6 0.72 1.6E-05 44.3 21.8 103 5-137 1-106 (348)
134 PHA01633 putative glycosyl tra 96.5 0.099 2.1E-06 49.5 14.7 84 331-422 200-307 (335)
135 COG0859 RfaF ADP-heptose:LPS h 96.4 0.79 1.7E-05 43.7 20.2 107 4-139 1-109 (334)
136 PF06722 DUF1205: Protein of u 96.2 0.011 2.3E-07 44.6 5.2 53 261-313 27-84 (97)
137 PRK10964 ADP-heptose:LPS hepto 96.2 1.1 2.3E-05 42.6 19.8 45 5-49 1-47 (322)
138 TIGR02195 heptsyl_trn_II lipop 96.1 0.92 2E-05 43.2 19.2 102 6-137 1-105 (334)
139 PHA01630 putative group 1 glyc 96.0 0.32 7E-06 46.2 15.4 105 338-458 196-329 (331)
140 PF12000 Glyco_trans_4_3: Gkyc 96.0 0.08 1.7E-06 44.5 9.7 96 30-141 1-97 (171)
141 cd03789 GT1_LPS_heptosyltransf 95.9 0.89 1.9E-05 42.1 17.9 102 6-137 1-105 (279)
142 TIGR02201 heptsyl_trn_III lipo 95.9 1.4 3E-05 42.3 19.4 105 6-137 1-108 (344)
143 PRK14098 glycogen synthase; Pr 95.7 0.22 4.7E-06 50.2 13.6 116 329-460 359-486 (489)
144 TIGR03713 acc_sec_asp1 accesso 95.5 0.38 8.2E-06 48.7 14.3 83 332-431 409-497 (519)
145 PF13579 Glyco_trans_4_4: Glyc 95.5 0.02 4.3E-07 47.6 4.4 98 19-140 5-104 (160)
146 PF08660 Alg14: Oligosaccharid 95.4 0.27 5.8E-06 41.6 10.9 115 10-140 3-129 (170)
147 COG3660 Predicted nucleoside-d 95.2 2.2 4.9E-05 38.1 16.6 72 295-376 189-271 (329)
148 PF13524 Glyco_trans_1_2: Glyc 95.1 0.21 4.5E-06 37.3 8.6 82 357-454 9-91 (92)
149 KOG2941 Beta-1,4-mannosyltrans 94.9 3.2 6.9E-05 38.7 28.5 126 2-145 10-142 (444)
150 PF01975 SurE: Survival protei 94.4 0.31 6.7E-06 42.2 8.8 42 5-47 1-42 (196)
151 PRK14099 glycogen synthase; Pr 93.7 1.9 4.2E-05 43.4 14.4 40 3-42 2-47 (485)
152 COG1618 Predicted nucleotide k 93.5 0.32 7E-06 40.0 6.7 101 3-122 4-111 (179)
153 PF10093 DUF2331: Uncharacteri 93.4 7.6 0.00017 37.1 20.1 87 288-378 193-292 (374)
154 TIGR02400 trehalose_OtsA alpha 93.0 0.71 1.5E-05 46.0 9.9 101 338-458 342-455 (456)
155 PRK13932 stationary phase surv 92.5 1.3 2.8E-05 40.0 9.9 115 3-140 4-133 (257)
156 TIGR02919 accessory Sec system 92.5 1.6 3.4E-05 43.2 11.3 137 274-436 283-426 (438)
157 PF13439 Glyco_transf_4: Glyco 92.4 1.6 3.5E-05 36.5 10.3 29 14-42 11-39 (177)
158 COG0438 RfaG Glycosyltransfera 91.5 9.9 0.00021 35.4 15.7 88 332-431 257-351 (381)
159 PLN02939 transferase, transfer 91.4 4.8 0.0001 43.4 13.9 92 331-430 836-943 (977)
160 cd02067 B12-binding B12 bindin 91.3 1.2 2.7E-05 35.0 7.7 44 6-49 1-44 (119)
161 COG0003 ArsA Predicted ATPase 91.0 3.4 7.3E-05 38.9 11.2 46 4-49 1-47 (322)
162 PRK02261 methylaspartate mutas 91.0 1.1 2.4E-05 36.3 7.2 50 2-51 1-50 (137)
163 TIGR00087 surE 5'/3'-nucleotid 90.6 2.9 6.2E-05 37.7 10.0 112 5-140 1-128 (244)
164 cd03788 GT1_TPS Trehalose-6-Ph 90.4 2.8 6.2E-05 41.9 11.0 104 334-457 342-459 (460)
165 COG4370 Uncharacterized protei 90.3 1 2.2E-05 41.0 6.7 95 331-433 293-390 (412)
166 COG2894 MinD Septum formation 89.9 3.8 8.2E-05 35.8 9.5 39 4-42 1-41 (272)
167 PRK14501 putative bifunctional 89.4 3.4 7.3E-05 44.1 11.1 110 336-461 346-464 (726)
168 PF02374 ArsA_ATPase: Anion-tr 89.1 1.1 2.4E-05 42.0 6.4 47 5-51 1-48 (305)
169 PRK13935 stationary phase surv 88.9 6.1 0.00013 35.7 10.7 42 5-48 1-42 (253)
170 PRK13933 stationary phase surv 88.5 7.5 0.00016 35.1 11.0 41 5-47 1-41 (253)
171 PLN03063 alpha,alpha-trehalose 88.3 2.2 4.7E-05 45.8 8.8 105 338-461 362-479 (797)
172 KOG1111 N-acetylglucosaminyltr 88.1 24 0.00052 33.4 20.2 82 288-376 209-301 (426)
173 PF07429 Glyco_transf_56: 4-al 87.9 13 0.00028 35.0 12.3 82 332-421 245-332 (360)
174 PRK13934 stationary phase surv 87.9 8.3 0.00018 35.1 10.9 41 5-47 1-41 (266)
175 PRK02797 4-alpha-L-fucosyltran 87.7 13 0.00028 34.5 12.0 81 332-420 206-292 (322)
176 PF02951 GSH-S_N: Prokaryotic 87.5 1.1 2.4E-05 35.2 4.5 40 5-44 1-43 (119)
177 TIGR02370 pyl_corrinoid methyl 86.8 4.3 9.3E-05 35.3 8.4 105 4-134 84-188 (197)
178 cd00561 CobA_CobO_BtuR ATP:cor 86.1 19 0.00041 30.0 12.5 99 5-122 3-106 (159)
179 PRK06849 hypothetical protein; 85.9 8.1 0.00018 37.7 10.8 39 1-43 1-39 (389)
180 PRK05986 cob(I)alamin adenolsy 85.8 22 0.00047 30.6 11.8 105 4-122 22-126 (191)
181 PF00448 SRP54: SRP54-type pro 85.6 12 0.00026 32.5 10.5 40 6-45 3-42 (196)
182 PRK00346 surE 5'(3')-nucleotid 84.9 14 0.00029 33.5 10.7 111 5-140 1-124 (250)
183 COG4088 Predicted nucleotide k 84.7 12 0.00026 32.5 9.5 38 4-41 1-38 (261)
184 PF09314 DUF1972: Domain of un 84.3 26 0.00055 30.1 11.6 58 4-69 1-63 (185)
185 COG0541 Ffh Signal recognition 84.0 10 0.00022 36.9 9.8 44 4-47 100-143 (451)
186 COG0552 FtsY Signal recognitio 83.7 15 0.00032 34.5 10.5 43 5-47 140-182 (340)
187 PRK12342 hypothetical protein; 83.3 25 0.00054 31.9 11.7 30 111-140 109-144 (254)
188 TIGR00715 precor6x_red precorr 83.1 6.7 0.00014 35.7 8.1 35 5-44 1-35 (256)
189 PF05159 Capsule_synth: Capsul 83.0 9.8 0.00021 34.9 9.4 43 332-377 182-225 (269)
190 PF04464 Glyphos_transf: CDP-G 83.0 1.9 4E-05 41.8 4.8 113 331-453 251-367 (369)
191 COG1703 ArgK Putative periplas 82.9 6.5 0.00014 36.2 7.7 118 5-140 52-174 (323)
192 COG0496 SurE Predicted acid ph 82.9 5.8 0.00013 35.6 7.4 41 5-48 1-42 (252)
193 PRK05632 phosphate acetyltrans 82.8 18 0.0004 38.2 12.3 103 6-143 4-117 (684)
194 COG4394 Uncharacterized protei 82.7 38 0.00083 30.9 12.6 29 14-42 13-42 (370)
195 PF02441 Flavoprotein: Flavopr 82.5 2.2 4.7E-05 34.2 4.3 45 5-50 1-45 (129)
196 PF07015 VirC1: VirC1 protein; 82.5 5.4 0.00012 35.3 6.9 45 5-49 2-47 (231)
197 KOG0853 Glycosyltransferase [C 82.1 0.73 1.6E-05 45.5 1.6 62 362-431 381-442 (495)
198 PRK08305 spoVFB dipicolinate s 82.0 2.6 5.7E-05 36.3 4.8 46 2-47 3-48 (196)
199 cd01425 RPS2 Ribosomal protein 81.7 7.2 0.00016 33.8 7.5 113 20-143 44-161 (193)
200 COG1484 DnaC DNA replication p 81.5 2.9 6.3E-05 38.0 5.2 46 4-49 105-150 (254)
201 cd03793 GT1_Glycogen_synthase_ 81.3 9.7 0.00021 38.8 9.1 83 341-429 467-558 (590)
202 KOG0780 Signal recognition par 81.2 17 0.00038 34.7 9.9 42 5-46 102-143 (483)
203 PRK13789 phosphoribosylamine-- 81.1 6 0.00013 39.1 7.7 38 1-43 1-38 (426)
204 COG2910 Putative NADH-flavin r 80.6 2.2 4.7E-05 36.1 3.6 35 5-43 1-35 (211)
205 PRK05973 replicative DNA helic 80.4 20 0.00043 32.2 9.9 45 6-50 66-110 (237)
206 PRK01077 cobyrinic acid a,c-di 80.0 18 0.00039 36.1 10.6 38 4-41 3-41 (451)
207 PF02142 MGS: MGS-like domain 80.0 5.4 0.00012 29.9 5.4 84 21-136 2-94 (95)
208 PHA02542 41 41 helicase; Provi 79.9 16 0.00034 36.7 10.1 43 7-49 193-235 (473)
209 PRK00090 bioD dithiobiotin syn 79.4 16 0.00035 32.3 9.3 33 7-39 2-35 (222)
210 smart00851 MGS MGS-like domain 79.1 23 0.00049 26.1 8.5 28 21-50 2-29 (90)
211 TIGR03600 phage_DnaB phage rep 78.9 16 0.00035 36.1 9.9 43 7-49 197-240 (421)
212 PRK08506 replicative DNA helic 78.8 13 0.00029 37.2 9.3 43 7-49 195-237 (472)
213 PF06925 MGDG_synth: Monogalac 78.7 5.8 0.00013 33.5 5.9 22 17-38 1-23 (169)
214 TIGR02015 BchY chlorophyllide 78.6 22 0.00047 35.2 10.5 27 110-139 354-380 (422)
215 PF02310 B12-binding: B12 bind 78.0 8 0.00017 30.3 6.2 44 6-49 2-45 (121)
216 PRK10867 signal recognition pa 77.6 31 0.00066 34.1 11.1 42 6-47 102-144 (433)
217 cd00550 ArsA_ATPase Oxyanion-t 77.5 23 0.00051 32.1 9.8 38 7-44 3-40 (254)
218 TIGR01425 SRP54_euk signal rec 77.5 30 0.00064 34.1 10.9 41 5-45 101-141 (429)
219 PRK00784 cobyric acid synthase 77.3 18 0.00038 36.6 9.7 35 6-40 4-39 (488)
220 cd00984 DnaB_C DnaB helicase C 77.2 24 0.00053 31.6 9.9 43 7-49 16-59 (242)
221 COG2185 Sbm Methylmalonyl-CoA 77.2 23 0.00049 28.8 8.3 46 3-48 11-56 (143)
222 TIGR00064 ftsY signal recognit 76.9 53 0.0012 30.2 12.0 40 6-45 74-113 (272)
223 PRK14098 glycogen synthase; Pr 76.9 3.9 8.4E-05 41.3 5.0 40 3-42 4-49 (489)
224 cd01423 MGS_CPS_I_III Methylgl 76.1 35 0.00075 26.6 9.2 87 17-137 11-106 (116)
225 TIGR00347 bioD dethiobiotin sy 76.0 24 0.00053 29.4 9.0 28 11-38 5-32 (166)
226 PRK05595 replicative DNA helic 75.9 6.2 0.00013 39.3 6.0 44 7-50 204-248 (444)
227 PRK14099 glycogen synthase; Pr 75.7 4.5 9.7E-05 40.8 5.0 117 331-460 349-479 (485)
228 PRK12311 rpsB 30S ribosomal pr 75.4 21 0.00045 33.7 8.8 34 110-143 151-186 (326)
229 PRK03359 putative electron tra 75.3 49 0.0011 30.1 11.0 31 111-141 112-148 (256)
230 PRK08006 replicative DNA helic 75.2 19 0.00042 36.1 9.2 43 7-49 227-270 (471)
231 PF12146 Hydrolase_4: Putative 74.5 7.6 0.00016 28.0 4.6 35 5-39 16-50 (79)
232 cd02070 corrinoid_protein_B12- 74.3 8.7 0.00019 33.5 5.9 107 4-136 82-188 (201)
233 PRK11519 tyrosine kinase; Prov 74.1 80 0.0017 33.8 14.0 118 4-139 525-667 (719)
234 PF03796 DnaB_C: DnaB-like hel 74.0 21 0.00045 32.5 8.6 43 7-49 22-65 (259)
235 cd01121 Sms Sms (bacterial rad 73.3 5.1 0.00011 38.7 4.5 42 7-48 85-126 (372)
236 COG1435 Tdk Thymidine kinase [ 73.2 61 0.0013 28.0 10.8 40 3-42 2-42 (201)
237 PRK13931 stationary phase surv 72.8 24 0.00051 32.2 8.4 99 20-140 15-129 (261)
238 PRK11889 flhF flagellar biosyn 72.2 49 0.0011 32.3 10.6 40 5-44 242-281 (436)
239 PRK13234 nifH nitrogenase redu 72.2 7.4 0.00016 36.3 5.3 42 1-42 1-42 (295)
240 PRK08760 replicative DNA helic 72.2 21 0.00046 35.8 8.7 43 7-49 232-275 (476)
241 TIGR00708 cobA cob(I)alamin ad 72.0 60 0.0013 27.5 12.1 98 4-121 5-107 (173)
242 PRK07313 phosphopantothenoylcy 71.9 5.9 0.00013 33.9 4.1 45 4-49 1-45 (182)
243 PF01075 Glyco_transf_9: Glyco 71.7 11 0.00024 33.9 6.2 94 273-376 104-208 (247)
244 COG1066 Sms Predicted ATP-depe 71.7 3.3 7.1E-05 39.8 2.7 102 7-140 96-218 (456)
245 PF01012 ETF: Electron transfe 71.6 6.2 0.00013 33.1 4.2 110 6-140 1-122 (164)
246 PRK00771 signal recognition pa 71.5 47 0.001 32.9 10.7 41 5-45 96-136 (437)
247 cd07039 TPP_PYR_POX Pyrimidine 71.3 43 0.00094 28.0 9.2 29 347-377 62-96 (164)
248 PF00731 AIRC: AIR carboxylase 71.1 57 0.0012 26.8 11.8 139 276-438 2-148 (150)
249 PRK06921 hypothetical protein; 71.1 82 0.0018 28.9 11.7 36 5-40 118-154 (266)
250 PF06506 PrpR_N: Propionate ca 70.9 8.5 0.00018 32.7 4.9 33 347-380 31-63 (176)
251 PRK14974 cell division protein 70.5 40 0.00088 32.0 9.7 41 5-45 141-181 (336)
252 PRK06029 3-octaprenyl-4-hydrox 70.5 8.3 0.00018 33.1 4.7 45 4-49 1-46 (185)
253 PRK06321 replicative DNA helic 70.3 17 0.00036 36.5 7.5 43 7-49 229-272 (472)
254 TIGR00959 ffh signal recogniti 70.1 60 0.0013 32.1 11.1 41 6-46 101-142 (428)
255 KOG0202 Ca2+ transporting ATPa 69.8 62 0.0013 34.4 11.3 152 275-458 572-748 (972)
256 PRK08840 replicative DNA helic 69.8 28 0.00061 34.8 9.0 44 7-50 220-264 (464)
257 PRK11823 DNA repair protein Ra 69.5 7.1 0.00015 38.8 4.7 42 7-48 83-124 (446)
258 PRK04885 ppnK inorganic polyph 69.0 8.8 0.00019 35.1 4.8 53 351-423 36-94 (265)
259 PF00551 Formyl_trans_N: Formy 69.0 44 0.00095 28.5 9.0 34 5-41 1-36 (181)
260 cd02071 MM_CoA_mut_B12_BD meth 68.9 12 0.00026 29.6 5.1 44 6-49 1-44 (122)
261 PRK07206 hypothetical protein; 68.9 19 0.0004 35.5 7.6 32 6-42 4-35 (416)
262 cd01980 Chlide_reductase_Y Chl 68.7 53 0.0011 32.4 10.6 28 110-140 349-376 (416)
263 PF02572 CobA_CobO_BtuR: ATP:c 68.7 52 0.0011 27.8 9.0 103 4-121 3-106 (172)
264 TIGR02655 circ_KaiC circadian 68.2 26 0.00057 35.3 8.5 45 6-50 265-309 (484)
265 PRK09165 replicative DNA helic 68.2 38 0.00082 34.3 9.6 43 7-49 220-277 (497)
266 cd01124 KaiC KaiC is a circadi 67.9 23 0.00049 30.2 7.1 43 7-49 2-44 (187)
267 PRK06904 replicative DNA helic 67.7 29 0.00064 34.8 8.6 44 7-50 224-268 (472)
268 COG0052 RpsB Ribosomal protein 67.1 40 0.00087 30.1 8.2 34 110-143 155-190 (252)
269 TIGR00416 sms DNA repair prote 66.9 13 0.00027 37.2 5.8 42 7-48 97-138 (454)
270 cd01424 MGS_CPS_II Methylglyox 66.9 56 0.0012 25.1 9.3 84 16-137 10-100 (110)
271 PRK05920 aromatic acid decarbo 66.7 11 0.00023 33.0 4.6 45 4-49 3-47 (204)
272 PRK13768 GTPase; Provisional 66.4 13 0.00027 33.9 5.3 38 6-43 4-41 (253)
273 PRK12446 undecaprenyldiphospho 65.9 20 0.00043 34.5 6.9 32 345-376 86-120 (352)
274 PRK13011 formyltetrahydrofolat 65.5 69 0.0015 29.7 10.0 121 1-139 1-144 (286)
275 COG2109 BtuR ATP:corrinoid ade 65.2 89 0.0019 26.8 10.9 98 7-122 31-133 (198)
276 TIGR00665 DnaB replicative DNA 65.2 46 0.00099 33.0 9.5 43 7-49 198-241 (434)
277 KOG1250 Threonine/serine dehyd 65.1 35 0.00077 32.7 7.9 63 354-424 248-318 (457)
278 PRK07773 replicative DNA helic 65.1 48 0.001 36.4 10.3 44 7-50 220-264 (886)
279 COG2874 FlaH Predicted ATPases 64.8 14 0.0003 32.3 4.8 95 11-122 35-134 (235)
280 TIGR03029 EpsG chain length de 64.8 1.1E+02 0.0025 27.9 11.7 38 4-41 102-141 (274)
281 PRK08116 hypothetical protein; 64.8 49 0.0011 30.4 8.9 42 7-48 117-158 (268)
282 PRK00843 egsA NAD(P)-dependent 64.6 82 0.0018 30.2 10.8 116 1-143 1-122 (350)
283 cd01974 Nitrogenase_MoFe_beta 64.6 49 0.0011 32.9 9.5 27 110-139 376-402 (435)
284 PRK13869 plasmid-partitioning 64.4 85 0.0018 30.8 11.0 39 5-43 121-161 (405)
285 CHL00067 rps2 ribosomal protei 64.4 31 0.00067 30.8 7.2 34 110-143 160-195 (230)
286 TIGR03499 FlhF flagellar biosy 63.5 18 0.00039 33.5 5.8 39 6-44 196-236 (282)
287 TIGR02398 gluc_glyc_Psyn gluco 63.5 34 0.00073 34.4 8.0 106 334-459 364-482 (487)
288 PRK02155 ppnK NAD(+)/NADH kina 63.4 12 0.00026 34.8 4.7 53 351-423 64-120 (291)
289 PF08433 KTI12: Chromatin asso 63.2 40 0.00086 31.0 7.9 102 5-144 2-109 (270)
290 cd01122 GP4d_helicase GP4d_hel 63.1 57 0.0012 29.8 9.2 44 6-49 32-76 (271)
291 cd02069 methionine_synthase_B1 63.0 21 0.00045 31.5 5.9 49 3-51 87-135 (213)
292 TIGR03880 KaiC_arch_3 KaiC dom 63.0 50 0.0011 29.2 8.5 46 6-51 18-63 (224)
293 PRK05636 replicative DNA helic 63.0 30 0.00065 35.0 7.7 43 7-49 268-311 (505)
294 PRK10416 signal recognition pa 62.9 1.3E+02 0.0028 28.4 11.5 39 6-44 116-154 (318)
295 TIGR00313 cobQ cobyric acid sy 62.7 1.2E+02 0.0026 30.5 11.9 28 14-41 9-36 (475)
296 TIGR02195 heptsyl_trn_II lipop 62.5 41 0.00089 31.9 8.4 98 6-140 176-278 (334)
297 PRK02649 ppnK inorganic polyph 62.2 12 0.00026 35.0 4.4 54 350-423 68-125 (305)
298 TIGR00379 cobB cobyrinic acid 62.1 73 0.0016 31.8 10.2 35 7-41 2-37 (449)
299 PRK06988 putative formyltransf 62.1 81 0.0018 29.7 10.0 33 4-41 2-34 (312)
300 PRK07004 replicative DNA helic 61.8 1E+02 0.0022 30.9 11.2 43 7-49 216-259 (460)
301 PRK14077 pnk inorganic polypho 61.6 14 0.0003 34.3 4.6 54 350-423 64-121 (287)
302 cd03115 SRP The signal recogni 61.5 96 0.0021 25.9 10.8 39 7-45 3-41 (173)
303 PRK05647 purN phosphoribosylgl 61.4 1.1E+02 0.0024 26.6 10.4 35 4-41 1-37 (200)
304 cd00532 MGS-like MGS-like doma 61.1 70 0.0015 24.7 8.0 34 16-51 9-42 (112)
305 PRK14618 NAD(P)H-dependent gly 61.0 9.9 0.00021 36.1 3.8 36 1-41 1-36 (328)
306 PF01695 IstB_IS21: IstB-like 61.0 15 0.00032 31.4 4.4 46 4-49 47-92 (178)
307 PRK05748 replicative DNA helic 60.9 23 0.0005 35.3 6.5 43 7-49 206-249 (448)
308 KOG3339 Predicted glycosyltran 60.9 55 0.0012 27.8 7.4 24 8-31 41-64 (211)
309 COG2861 Uncharacterized protei 60.9 40 0.00087 30.0 7.0 39 93-137 137-178 (250)
310 PF01656 CbiA: CobQ/CobB/MinD/ 60.8 88 0.0019 26.5 9.6 121 10-144 5-127 (195)
311 PF08323 Glyco_transf_5: Starc 60.5 12 0.00027 33.8 4.1 27 16-42 17-43 (245)
312 PRK12726 flagellar biosynthesi 60.2 1.4E+02 0.0031 29.0 11.1 39 7-45 209-247 (407)
313 KOG2825 Putative arsenite-tran 59.7 1.3E+02 0.0027 27.3 9.8 50 4-53 18-68 (323)
314 cd03466 Nitrogenase_NifN_2 Nit 59.7 71 0.0015 31.7 9.6 27 110-139 371-397 (429)
315 PF04127 DFP: DNA / pantothena 59.6 10 0.00023 32.5 3.3 22 21-42 32-53 (185)
316 TIGR02852 spore_dpaB dipicolin 59.5 16 0.00035 31.3 4.4 40 6-45 2-41 (187)
317 PRK14106 murD UDP-N-acetylmura 59.4 89 0.0019 31.1 10.5 34 4-42 5-38 (450)
318 COG0859 RfaF ADP-heptose:LPS h 59.3 28 0.00061 33.1 6.6 98 5-140 176-278 (334)
319 PF03446 NAD_binding_2: NAD bi 59.1 8.2 0.00018 32.3 2.6 33 4-41 1-33 (163)
320 TIGR01011 rpsB_bact ribosomal 59.0 51 0.0011 29.3 7.6 34 110-143 154-189 (225)
321 PRK08229 2-dehydropantoate 2-r 58.5 10 0.00022 36.2 3.4 41 4-49 2-42 (341)
322 PF01210 NAD_Gly3P_dh_N: NAD-d 57.9 6.8 0.00015 32.6 1.9 32 6-42 1-32 (157)
323 PRK11199 tyrA bifunctional cho 57.8 1E+02 0.0023 29.8 10.2 35 3-42 97-132 (374)
324 TIGR01285 nifN nitrogenase mol 57.7 73 0.0016 31.6 9.3 87 5-139 312-398 (432)
325 cd02037 MRP-like MRP (Multiple 57.5 41 0.0009 28.1 6.7 33 10-42 6-38 (169)
326 TIGR01501 MthylAspMutase methy 57.4 48 0.001 26.7 6.5 46 5-50 2-47 (134)
327 PF06564 YhjQ: YhjQ protein; 57.4 1.5E+02 0.0032 26.8 12.3 38 4-41 1-39 (243)
328 TIGR03878 thermo_KaiC_2 KaiC d 57.3 98 0.0021 28.2 9.5 38 7-44 39-76 (259)
329 PRK06249 2-dehydropantoate 2-r 57.2 30 0.00066 32.5 6.3 41 3-49 4-44 (313)
330 PRK02231 ppnK inorganic polyph 57.1 16 0.00034 33.6 4.2 55 351-425 43-101 (272)
331 COG1448 TyrB Aspartate/tyrosin 56.6 1.7E+02 0.0037 28.2 10.8 80 348-442 252-331 (396)
332 PRK04539 ppnK inorganic polyph 56.5 18 0.0004 33.7 4.6 53 351-423 69-125 (296)
333 CHL00072 chlL photochlorophyll 56.0 22 0.00047 33.1 5.1 39 5-43 1-39 (290)
334 PRK01911 ppnK inorganic polyph 55.9 19 0.00041 33.5 4.5 53 351-423 65-121 (292)
335 TIGR01286 nifK nitrogenase mol 55.6 75 0.0016 32.3 9.1 27 110-139 436-462 (515)
336 PLN02939 transferase, transfer 55.6 21 0.00046 38.7 5.3 41 3-43 480-526 (977)
337 PRK05579 bifunctional phosphop 55.4 21 0.00045 35.0 4.9 48 1-49 3-50 (399)
338 PRK03372 ppnK inorganic polyph 55.0 20 0.00044 33.5 4.6 54 350-423 72-129 (306)
339 PRK12921 2-dehydropantoate 2-r 55.0 21 0.00046 33.3 4.9 40 5-49 1-40 (305)
340 cd07038 TPP_PYR_PDC_IPDC_like 54.9 35 0.00076 28.5 5.7 26 352-377 61-92 (162)
341 PRK07414 cob(I)yrinic acid a,c 54.9 1.3E+02 0.0029 25.5 11.8 101 3-121 20-125 (178)
342 PF07355 GRDB: Glycine/sarcosi 54.6 29 0.00062 32.8 5.4 47 90-140 63-119 (349)
343 PF04413 Glycos_transf_N: 3-De 54.5 76 0.0017 27.2 7.8 99 6-139 22-125 (186)
344 PRK06732 phosphopantothenate-- 54.4 20 0.00043 32.1 4.3 21 21-41 29-49 (229)
345 PRK05299 rpsB 30S ribosomal pr 54.2 74 0.0016 29.0 8.0 34 110-143 156-191 (258)
346 COG1663 LpxK Tetraacyldisaccha 54.1 31 0.00066 32.5 5.5 33 10-42 55-87 (336)
347 PRK09841 cryptic autophosphory 53.9 3.1E+02 0.0067 29.4 14.2 42 4-45 530-573 (726)
348 TIGR03575 selen_PSTK_euk L-ser 53.9 1.9E+02 0.0041 27.7 10.9 37 8-44 3-40 (340)
349 PRK01185 ppnK inorganic polyph 53.8 21 0.00047 32.7 4.5 53 351-423 53-106 (271)
350 COG0287 TyrA Prephenate dehydr 53.3 1.9E+02 0.0041 26.8 10.7 42 3-49 2-43 (279)
351 TIGR00345 arsA arsenite-activa 53.3 82 0.0018 29.2 8.4 29 22-50 3-31 (284)
352 COG0801 FolK 7,8-dihydro-6-hyd 53.3 29 0.00063 28.8 4.7 34 276-309 3-36 (160)
353 TIGR02201 heptsyl_trn_III lipo 53.3 71 0.0015 30.4 8.3 27 112-140 261-287 (344)
354 PRK14573 bifunctional D-alanyl 53.2 16 0.00034 39.7 4.2 35 1-39 1-35 (809)
355 COG2120 Uncharacterized protei 53.2 23 0.0005 31.8 4.6 41 2-42 8-48 (237)
356 PRK01175 phosphoribosylformylg 53.2 1.8E+02 0.0039 26.5 10.8 57 4-72 3-59 (261)
357 TIGR00421 ubiX_pad polyprenyl 52.9 18 0.00038 31.0 3.6 41 7-48 2-42 (181)
358 TIGR02237 recomb_radB DNA repa 52.6 1.5E+02 0.0034 25.6 10.8 44 7-50 15-59 (209)
359 cd02032 Bchl_like This family 52.5 24 0.00052 32.2 4.8 38 5-42 1-38 (267)
360 COG1763 MobB Molybdopterin-gua 52.4 30 0.00065 28.9 4.8 41 4-44 1-42 (161)
361 cd07035 TPP_PYR_POX_like Pyrim 52.4 82 0.0018 25.8 7.6 25 353-377 62-92 (155)
362 PF02585 PIG-L: GlcNAc-PI de-N 52.4 1.1E+02 0.0025 24.0 9.1 24 19-42 12-35 (128)
363 TIGR03371 cellulose_yhjQ cellu 52.4 1.7E+02 0.0037 26.0 11.4 39 6-44 3-42 (246)
364 PRK03501 ppnK inorganic polyph 52.2 26 0.00056 32.0 4.7 54 351-423 40-98 (264)
365 cd03789 GT1_LPS_heptosyltransf 51.6 42 0.00092 30.8 6.3 86 19-140 140-225 (279)
366 PRK03378 ppnK inorganic polyph 51.4 22 0.00049 33.0 4.3 54 350-423 63-120 (292)
367 TIGR01281 DPOR_bchL light-inde 51.3 27 0.00057 32.0 4.8 38 5-42 1-38 (268)
368 PRK06522 2-dehydropantoate 2-r 51.2 22 0.00048 33.1 4.4 40 5-49 1-41 (304)
369 PF08766 DEK_C: DEK C terminal 51.2 54 0.0012 21.4 5.0 46 408-456 1-51 (54)
370 PRK09739 hypothetical protein; 51.0 40 0.00088 29.2 5.7 38 3-40 2-42 (199)
371 PRK09620 hypothetical protein; 50.8 39 0.00084 30.2 5.6 37 5-41 4-52 (229)
372 PRK06067 flagellar accessory p 50.5 87 0.0019 27.9 8.0 44 6-49 27-70 (234)
373 cd01965 Nitrogenase_MoFe_beta_ 50.5 99 0.0022 30.6 9.0 27 110-139 370-396 (428)
374 PF05693 Glycogen_syn: Glycoge 50.4 17 0.00037 37.1 3.5 89 340-436 461-566 (633)
375 PF07905 PucR: Purine cataboli 50.4 1.2E+02 0.0025 24.0 7.7 44 263-310 35-79 (123)
376 PRK08939 primosomal protein Dn 50.3 32 0.00069 32.3 5.2 45 5-49 157-201 (306)
377 PRK14075 pnk inorganic polypho 50.2 28 0.00061 31.7 4.7 54 350-423 41-95 (256)
378 PF01075 Glyco_transf_9: Glyco 50.0 1E+02 0.0022 27.5 8.5 98 4-140 105-210 (247)
379 PRK06835 DNA replication prote 49.4 29 0.00062 32.9 4.8 44 5-48 184-227 (329)
380 PF02606 LpxK: Tetraacyldisacc 49.3 56 0.0012 31.0 6.7 33 10-42 43-75 (326)
381 PF03808 Glyco_tran_WecB: Glyc 49.2 1.6E+02 0.0035 24.8 11.0 95 21-143 37-136 (172)
382 cd03113 CTGs CTP synthetase (C 49.1 1.9E+02 0.0041 26.1 9.3 43 7-49 2-47 (255)
383 PRK05380 pyrG CTP synthetase; 49.0 1.6E+02 0.0034 30.0 9.9 46 4-49 1-49 (533)
384 PRK12724 flagellar biosynthesi 49.0 1.5E+02 0.0032 29.3 9.4 41 7-47 226-267 (432)
385 TIGR00750 lao LAO/AO transport 48.9 1.1E+02 0.0025 28.5 8.7 41 4-44 34-74 (300)
386 cd03114 ArgK-like The function 48.6 1.5E+02 0.0032 24.2 10.6 36 7-42 2-37 (148)
387 TIGR02113 coaC_strep phosphopa 48.4 25 0.00054 30.0 3.8 42 6-48 2-43 (177)
388 TIGR02329 propionate_PrpR prop 48.4 1.6E+02 0.0035 30.1 10.1 41 94-141 132-172 (526)
389 PRK04328 hypothetical protein; 48.3 2.1E+02 0.0045 25.8 12.6 44 6-49 25-68 (249)
390 PRK12723 flagellar biosynthesi 48.3 1.9E+02 0.0041 28.2 10.2 43 5-47 175-221 (388)
391 cd02034 CooC The accessory pro 48.2 43 0.00093 26.1 4.9 37 6-42 1-37 (116)
392 PLN02470 acetolactate synthase 48.1 78 0.0017 32.9 8.1 78 292-377 16-109 (585)
393 PRK10422 lipopolysaccharide co 48.1 51 0.0011 31.6 6.4 26 112-139 263-288 (352)
394 PRK06749 replicative DNA helic 48.0 2.2E+02 0.0048 28.2 10.9 43 7-49 189-231 (428)
395 cd01985 ETF The electron trans 47.9 1.7E+02 0.0037 24.7 11.0 29 111-139 91-122 (181)
396 cd02040 NifH NifH gene encodes 47.8 33 0.00072 31.3 4.9 39 5-43 2-40 (270)
397 TIGR00725 conserved hypothetic 47.6 83 0.0018 26.2 6.8 95 263-377 22-122 (159)
398 PRK10037 cell division protein 47.5 2.1E+02 0.0046 25.7 13.2 38 5-42 2-40 (250)
399 PRK14478 nitrogenase molybdenu 47.3 1.1E+02 0.0025 30.7 8.9 25 110-137 392-416 (475)
400 PRK06731 flhF flagellar biosyn 47.2 1E+02 0.0022 28.3 7.8 40 5-44 76-115 (270)
401 PF05673 DUF815: Protein of un 47.1 2.2E+02 0.0047 25.7 12.7 56 395-459 185-247 (249)
402 PRK08057 cobalt-precorrin-6x r 47.1 76 0.0017 28.7 6.9 34 4-42 2-35 (248)
403 cd02065 B12-binding_like B12 b 46.9 47 0.001 25.9 5.1 43 7-49 2-44 (125)
404 COG0143 MetG Methionyl-tRNA sy 46.8 37 0.00081 34.7 5.3 44 1-44 1-54 (558)
405 cd01452 VWA_26S_proteasome_sub 46.7 1.2E+02 0.0026 26.1 7.7 64 5-70 108-175 (187)
406 PF05225 HTH_psq: helix-turn-h 46.6 29 0.00064 21.8 3.0 25 408-432 1-26 (45)
407 PRK05703 flhF flagellar biosyn 46.6 44 0.00095 33.0 5.7 39 6-44 223-263 (424)
408 TIGR00640 acid_CoA_mut_C methy 46.5 1.5E+02 0.0033 23.7 8.9 45 3-47 1-45 (132)
409 PRK13230 nitrogenase reductase 46.5 37 0.0008 31.3 5.0 39 4-42 1-39 (279)
410 PRK13185 chlL protochlorophyll 46.1 37 0.00081 31.0 5.0 37 6-42 4-40 (270)
411 PRK07530 3-hydroxybutyryl-CoA 46.0 24 0.00051 32.8 3.7 36 1-41 1-36 (292)
412 PRK06270 homoserine dehydrogen 45.9 1.5E+02 0.0033 28.3 9.1 58 341-399 80-149 (341)
413 PF01591 6PF2K: 6-phosphofruct 45.8 2.2E+02 0.0047 25.3 11.1 113 6-142 14-132 (222)
414 TIGR01918 various_sel_PB selen 45.6 45 0.00097 32.5 5.3 44 92-139 61-114 (431)
415 PRK10916 ADP-heptose:LPS hepto 45.6 48 0.001 31.7 5.8 88 20-140 201-288 (348)
416 TIGR01007 eps_fam capsular exo 45.5 52 0.0011 28.5 5.6 40 5-44 17-58 (204)
417 PF02571 CbiJ: Precorrin-6x re 45.3 89 0.0019 28.3 7.1 36 5-46 1-36 (249)
418 PRK06718 precorrin-2 dehydroge 45.3 2.1E+02 0.0045 24.9 10.3 144 273-439 10-165 (202)
419 TIGR01917 gly_red_sel_B glycin 45.3 45 0.00098 32.4 5.3 46 90-139 59-114 (431)
420 COG2085 Predicted dinucleotide 45.3 41 0.00089 29.4 4.6 35 4-43 1-35 (211)
421 KOG0023 Alcohol dehydrogenase, 45.0 52 0.0011 30.8 5.4 44 3-51 181-226 (360)
422 PRK00094 gpsA NAD(P)H-dependen 45.0 22 0.00048 33.5 3.4 33 4-41 1-33 (325)
423 PRK06719 precorrin-2 dehydroge 45.0 40 0.00087 28.0 4.5 32 5-41 14-45 (157)
424 PF09001 DUF1890: Domain of un 44.6 17 0.00036 29.1 2.0 32 19-50 14-45 (139)
425 PRK08181 transposase; Validate 44.5 39 0.00085 31.0 4.7 44 4-47 106-149 (269)
426 PRK13896 cobyrinic acid a,c-di 44.3 3.3E+02 0.0072 27.1 11.3 36 6-41 3-39 (433)
427 PRK01231 ppnK inorganic polyph 44.2 37 0.00081 31.6 4.6 53 351-423 63-119 (295)
428 PRK03767 NAD(P)H:quinone oxido 44.1 44 0.00095 29.0 4.8 38 4-41 1-40 (200)
429 TIGR00853 pts-lac PTS system, 44.0 66 0.0014 24.1 5.1 40 3-42 2-41 (95)
430 PLN02929 NADH kinase 44.0 37 0.0008 31.6 4.4 66 350-423 64-138 (301)
431 PLN02935 Bifunctional NADH kin 43.8 39 0.00084 33.8 4.8 53 350-423 262-319 (508)
432 PRK09423 gldA glycerol dehydro 43.5 3E+02 0.0065 26.5 10.9 97 21-143 18-119 (366)
433 PRK00207 sulfur transfer compl 43.4 50 0.0011 26.4 4.6 38 5-42 1-42 (128)
434 TIGR03877 thermo_KaiC_1 KaiC d 43.2 2.4E+02 0.0053 25.1 10.0 45 5-49 22-66 (237)
435 PRK15062 hydrogenase isoenzyme 43.1 2.7E+02 0.0059 26.7 9.9 150 266-439 123-294 (364)
436 TIGR00337 PyrG CTP synthase. C 43.1 1.8E+02 0.004 29.5 9.3 45 5-49 1-48 (525)
437 PRK13982 bifunctional SbtC-lik 43.1 35 0.00077 34.1 4.4 37 5-41 257-305 (475)
438 PRK10353 3-methyl-adenine DNA 43.0 1.2E+02 0.0027 26.0 7.1 76 375-453 22-119 (187)
439 PF00282 Pyridoxal_deC: Pyrido 42.9 57 0.0012 31.6 5.8 70 351-422 104-191 (373)
440 PF04695 Pex14_N: Peroxisomal 42.6 38 0.00083 27.3 3.9 49 410-461 3-51 (136)
441 KOG1509 Predicted nucleic acid 42.5 1E+02 0.0022 26.5 6.3 67 30-106 7-73 (209)
442 COG0297 GlgA Glycogen synthase 42.5 3.8E+02 0.0082 27.1 14.6 159 289-464 309-482 (487)
443 PRK12377 putative replication 42.4 45 0.00098 30.2 4.7 44 5-48 102-145 (248)
444 PRK14619 NAD(P)H-dependent gly 41.9 28 0.0006 32.7 3.5 35 3-42 3-37 (308)
445 cd01715 ETF_alpha The electron 41.8 2.1E+02 0.0045 23.9 10.2 31 110-140 82-115 (168)
446 PRK03708 ppnK inorganic polyph 41.7 37 0.0008 31.3 4.1 53 350-422 57-112 (277)
447 PRK09590 celB cellobiose phosp 41.7 64 0.0014 24.7 4.8 38 4-41 1-38 (104)
448 TIGR01005 eps_transp_fam exopo 41.6 4.2E+02 0.0091 28.6 12.7 40 5-44 546-587 (754)
449 PRK14076 pnk inorganic polypho 41.6 37 0.0008 35.1 4.5 54 350-423 348-405 (569)
450 PLN02327 CTP synthase 41.5 2.2E+02 0.0048 29.1 9.6 44 6-49 2-48 (557)
451 PLN02695 GDP-D-mannose-3',5'-e 40.5 56 0.0012 31.6 5.4 36 1-40 18-53 (370)
452 TIGR01283 nifE nitrogenase mol 40.4 3.3E+02 0.0071 27.3 11.0 26 110-138 394-419 (456)
453 KOG0781 Signal recognition par 40.3 1E+02 0.0022 30.7 6.8 42 5-46 379-420 (587)
454 PLN00016 RNA-binding protein; 40.3 37 0.0008 32.9 4.2 39 4-42 52-90 (378)
455 PF08497 Radical_SAM_N: Radica 40.1 3.1E+02 0.0066 25.4 9.6 47 5-51 17-67 (302)
456 COG2084 MmsB 3-hydroxyisobutyr 40.1 35 0.00076 31.5 3.6 35 5-44 1-35 (286)
457 PRK13235 nifH nitrogenase redu 39.9 50 0.0011 30.3 4.8 38 5-42 2-39 (274)
458 PF04244 DPRP: Deoxyribodipyri 39.8 39 0.00085 30.0 3.8 26 17-42 47-72 (224)
459 COG2236 Predicted phosphoribos 39.8 1.1E+02 0.0023 26.5 6.3 49 93-143 13-64 (192)
460 PHA02754 hypothetical protein; 39.7 46 0.001 21.9 3.0 26 414-439 5-30 (67)
461 PRK11064 wecC UDP-N-acetyl-D-m 39.4 39 0.00085 33.3 4.2 36 1-42 1-36 (415)
462 COG0503 Apt Adenine/guanine ph 39.4 70 0.0015 27.3 5.2 30 110-139 52-83 (179)
463 TIGR02699 archaeo_AfpA archaeo 39.4 51 0.0011 28.0 4.2 35 15-49 9-45 (174)
464 PF01924 HypD: Hydrogenase for 39.3 80 0.0017 30.0 5.8 110 266-421 118-229 (355)
465 TIGR02700 flavo_MJ0208 archaeo 39.3 48 0.001 29.7 4.4 36 14-49 8-46 (234)
466 PRK06130 3-hydroxybutyryl-CoA 39.2 35 0.00076 32.0 3.7 36 1-41 1-36 (311)
467 PF06506 PrpR_N: Propionate ca 39.1 60 0.0013 27.5 4.8 110 16-143 17-154 (176)
468 PRK07819 3-hydroxybutyryl-CoA 39.0 38 0.00082 31.4 3.8 37 1-42 1-38 (286)
469 cd00672 CysRS_core catalytic c 39.0 79 0.0017 27.8 5.6 94 13-137 34-131 (213)
470 PF02558 ApbA: Ketopantoate re 38.8 43 0.00093 27.3 3.8 29 23-51 12-40 (151)
471 PRK06526 transposase; Provisio 38.8 31 0.00067 31.4 3.1 44 4-47 98-141 (254)
472 COG1090 Predicted nucleoside-d 38.3 3E+02 0.0064 25.4 9.0 25 22-46 12-36 (297)
473 TIGR00730 conserved hypothetic 38.3 2.5E+02 0.0054 23.9 9.2 35 6-40 2-40 (178)
474 TIGR00745 apbA_panE 2-dehydrop 38.2 47 0.001 30.7 4.4 27 23-49 5-31 (293)
475 PRK03094 hypothetical protein; 38.1 31 0.00067 24.8 2.3 20 21-40 10-29 (80)
476 COG1348 NifH Nitrogenase subun 38.1 72 0.0016 28.4 5.0 43 4-46 1-43 (278)
477 PF02702 KdpD: Osmosensitive K 37.9 55 0.0012 28.4 4.2 40 4-43 5-44 (211)
478 PRK09219 xanthine phosphoribos 37.9 86 0.0019 27.0 5.5 30 110-139 49-80 (189)
479 PF00318 Ribosomal_S2: Ribosom 37.9 66 0.0014 28.3 5.0 34 110-143 142-177 (211)
480 PRK02910 light-independent pro 37.8 2.5E+02 0.0053 28.7 9.7 27 110-139 361-387 (519)
481 COG1440 CelA Phosphotransferas 37.8 79 0.0017 23.9 4.5 38 4-41 1-38 (102)
482 PRK13236 nitrogenase reductase 37.7 67 0.0015 29.9 5.3 39 5-43 6-45 (296)
483 PRK14569 D-alanyl-alanine synt 37.6 74 0.0016 29.6 5.6 39 2-40 1-43 (296)
484 PF06745 KaiC: KaiC; InterPro 37.5 1E+02 0.0022 27.2 6.3 47 5-51 20-67 (226)
485 PRK07952 DNA replication prote 37.3 60 0.0013 29.3 4.7 42 6-47 101-142 (244)
486 PLN02545 3-hydroxybutyryl-CoA 37.2 41 0.00088 31.3 3.8 37 1-42 1-37 (295)
487 PRK00881 purH bifunctional pho 37.0 2E+02 0.0043 29.1 8.5 43 3-51 3-45 (513)
488 PF13419 HAD_2: Haloacid dehal 37.0 2.3E+02 0.005 23.1 8.7 92 21-138 82-176 (176)
489 PF10649 DUF2478: Protein of u 36.9 2.5E+02 0.0054 23.4 8.8 117 11-141 5-132 (159)
490 COG0773 MurC UDP-N-acetylmuram 36.9 45 0.00097 33.0 4.0 30 3-36 6-35 (459)
491 PLN02240 UDP-glucose 4-epimera 36.8 66 0.0014 30.6 5.3 34 3-40 4-37 (352)
492 PRK08322 acetolactate synthase 36.6 1.4E+02 0.0031 30.6 8.0 26 352-377 65-96 (547)
493 COG1797 CobB Cobyrinic acid a, 36.5 46 0.00099 32.6 3.9 33 6-38 2-35 (451)
494 cd01983 Fer4_NifH The Fer4_Nif 36.4 85 0.0018 22.6 4.9 33 7-39 2-34 (99)
495 TIGR00521 coaBC_dfp phosphopan 36.4 54 0.0012 31.9 4.5 45 4-49 3-47 (390)
496 PLN02880 tyrosine decarboxylas 36.3 80 0.0017 31.9 5.9 70 351-421 147-235 (490)
497 cd01394 radB RadB. The archaea 36.3 2.9E+02 0.0063 24.0 13.2 38 5-42 19-57 (218)
498 COG0240 GpsA Glycerol-3-phosph 36.2 52 0.0011 31.0 4.1 34 4-42 1-34 (329)
499 KOG3062 RNA polymerase II elon 36.2 82 0.0018 27.9 5.0 37 4-40 1-38 (281)
500 PF13481 AAA_25: AAA domain; P 36.1 2.6E+02 0.0057 23.6 8.5 45 6-50 34-88 (193)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3e-66 Score=504.31 Aligned_cols=436 Identities=32% Similarity=0.626 Sum_probs=340.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
|..+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+.. ....+++|+.+|++.+.. ...+
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~-----~~~~~i~~v~lp~g~~~~--~~~~ 75 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL-----DPKLGITFMSISDGQDDD--PPRD 75 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc-----CCCCCEEEEECCCCCCCC--cccc
Confidence 445679999999999999999999999999999999999998877665431 111369999999876532 2234
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
+..+...+...+.+.++++++.+... .++++||+|.+..|+..+|+.+|||++.++++++.......++|.....+.
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~~---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDED---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCC---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 44555555556778888888876532 245999999999999999999999999999998887777666655443332
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhh--------
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPAC-------- 232 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~-------- 232 (468)
.+..+.+ .....+..+|+++.++.++++.. ..........+..+.+..+....++.+++||+.+||+...
T Consensus 153 ~~~~~~~-~~~~~~~~~Pg~~~l~~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 153 ISETGCP-RQLEKICVLPEQPLLSTEDLPWL-IGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred ccccccc-ccccccccCCCCCCCChhhCcch-hcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 2211111 11111235788877777777732 2221111223445555566677889999999999998532
Q ss_pred -ccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccc-cCCHHHHHHHHHHHHhCCCCEEEEE
Q 012212 233 -DLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVA-VLSQQQFAELALGLESLQKPFLWVI 310 (468)
Q Consensus 233 -~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~l~~~ 310 (468)
+..|+++.|||++............|..+.++.+||+++++++||||||||.. ..+.+++++++.+++.++.+|||++
T Consensus 231 ~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~ 310 (448)
T PLN02562 231 NGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVL 310 (448)
T ss_pred cccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 23578999999987542111012223445567899999988889999999975 6799999999999999999999999
Q ss_pred cCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHH
Q 012212 311 RQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYIC 390 (468)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~ 390 (468)
... ....+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||++++
T Consensus 311 ~~~----~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 386 (448)
T PLN02562 311 NPV----WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIV 386 (448)
T ss_pred cCC----chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 753 2235888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 391 EAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 391 ~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
+.+|+|+.++ + ++.++|+++|+++|+|++||+||++++++++++ .+||||.+++++||++++
T Consensus 387 ~~~g~g~~~~--~---~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 387 DVWKIGVRIS--G---FGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHhCceeEeC--C---CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 6469998884 4 899999999999999999999999999999987 667999999999999863
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.3e-64 Score=485.98 Aligned_cols=434 Identities=28% Similarity=0.502 Sum_probs=334.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
++.||+++|++++||++|++.||+.|+.||+.|||++++.+... . . ....+++|..+|+++++.........
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~-~-----~~~~~i~~~~ip~glp~~~~~~~~~~ 77 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--P-S-----DDFTDFQFVTIPESLPESDFKNLGPI 77 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--c-c-----cCCCCeEEEeCCCCCCcccccccCHH
Confidence 35799999999999999999999999999999999999976421 1 0 11136999999988765321112234
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC-C
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI-I 161 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~-~ 161 (468)
.++..+...+.+.++++++.+.... ..++++||+|.+..|+..+|+.+|||.+.++++++.......+++.....+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~L~~l~~~~-~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 78 EFLHKLNKECQVSFKDCLGQLVLQQ-GNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc-CCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 5555555566777888887764211 1457999999999999999999999999999999988776665544443221 1
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC-----C
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI-----P 236 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-----p 236 (468)
+... ........+|+++.++..+++ .+..... ......+.. ......++.+++||+.+||....+.. +
T Consensus 157 ~~~~---~~~~~~~~iPg~~~~~~~dlp-~~~~~~~--~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~ 229 (451)
T PLN02410 157 PLKE---PKGQQNELVPEFHPLRCKDFP-VSHWASL--ESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQLQI 229 (451)
T ss_pred Cccc---cccCccccCCCCCCCChHHCc-chhcCCc--HHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhccCC
Confidence 1000 001112257777766666666 2221111 112222222 22356889999999999998755433 5
Q ss_pred CceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 012212 237 NILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMN 316 (468)
Q Consensus 237 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~ 316 (468)
++++|||++...... ...+..+.++.+||+++++++||||+|||....+.+++++++.+|+..+.+|+|++......
T Consensus 230 ~v~~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~ 306 (451)
T PLN02410 230 PVYPIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR 306 (451)
T ss_pred CEEEecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc
Confidence 899999998643211 11123345688999999888999999999999999999999999999999999999843111
Q ss_pred --CcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhh
Q 012212 317 --GSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394 (468)
Q Consensus 317 --~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG 394 (468)
+....+|++|.|++++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||
T Consensus 307 ~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~ 386 (451)
T PLN02410 307 GSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWK 386 (451)
T ss_pred ccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhC
Confidence 112248999999999999999999999999999999999999999999999999999999999999999999987569
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
+|+.+. .. ++.++|+++|+++|.|+ +||++|++|++++++++.+||||.+++++||+.++.
T Consensus 387 ~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 387 IGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred eeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999997 34 99999999999999875 699999999999999999999999999999998864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-63 Score=482.49 Aligned_cols=427 Identities=30% Similarity=0.574 Sum_probs=333.4
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc-CCC
Q 012212 1 MSR-QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA-ADR 78 (468)
Q Consensus 1 m~~-~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 78 (468)
|.+ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ...+++|+.+|++++... ...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~~~~~ 73 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGGFSSA 73 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcccccc
Confidence 544 46999999999999999999999999999999999999876554321 114599999998877631 122
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCc-eEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhh
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPI-RCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~p-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
.+...++..+...+.+.++++++.+... .+| |+||+|.+..|+..+|+.+|||.+.+++++++......+ +.. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~ 148 (449)
T PLN02173 74 GSVPEYLQNFKTFGSKTVADIIRKHQST---DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-N 148 (449)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHhhcc---CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-c
Confidence 3455666666667788889988876432 245 999999999999999999999999999988776644332 111 1
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC--
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI-- 235 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-- 235 (468)
.+ .....+|+++.++..+++ .++............+.+..+...+++.+++||+.+||....+..
T Consensus 149 ~~------------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 149 NG------------SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred cC------------CccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh
Confidence 00 011236777777777777 323221111223344445556677899999999999998755444
Q ss_pred -CCceeeccccCCCC----CCCCC---CCCC--CCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCC
Q 012212 236 -PNILPIGPLLASNH----SGDLD---GNFW--SEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKP 305 (468)
Q Consensus 236 -p~v~~vGpl~~~~~----~~~~~---~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 305 (468)
++++.|||+++... ..... ...| ..++++.+||+.+++++||||||||....+.+++.+++.++ .+.+
T Consensus 216 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 216 VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 47999999974311 00000 1122 23456999999999899999999999889999999999999 5778
Q ss_pred EEEEEcCCCCCCcccCCchhHHHHh-CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhh
Q 012212 306 FLWVIRQDFMNGSRAKFPDGFIERV-SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQ 384 (468)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~ 384 (468)
|+|++... ....+|+++.+++ ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 294 flWvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 369 (449)
T PLN02173 294 YLWVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPM 369 (449)
T ss_pred EEEEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchH
Confidence 99999753 2235888998887 688999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhceeEeeccC-CCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 385 NRNYICEAWKIGLQFFADE-NGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 385 na~rv~~~lG~g~~l~~~~-~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
||+++++.||+|+.+..++ ++.++.++|+++|+++|.|+ ++|+||++++++.++++.+||||.+++++|++++.
T Consensus 370 Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 370 NAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9999997679999997543 34579999999999999774 48999999999999999999999999999999875
No 4
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-63 Score=484.70 Aligned_cols=448 Identities=30% Similarity=0.529 Sum_probs=342.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhh--hh--ccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQ--EK--AEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~--~~--~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
..||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+... .. .......+.|..+|++++.......
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 5899999999999999999999999999999999999987766542110 00 0001123677777777654321222
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcC
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAG 159 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 159 (468)
++..++..+...+.+.++++++.+.... .++++||+|.+..|+..+|+.+|||.++++++++.......+++ .+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~ 160 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HG 160 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hc
Confidence 4444555555567778888888764322 23499999999999999999999999999999998888776653 12
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC---C
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI---P 236 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---p 236 (468)
..+..... .. .....+|+++.++..+++ .+.............+.+..+...+++.+++||+.+||....... .
T Consensus 161 ~~~~~~~~-~~-~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 237 (480)
T PLN02555 161 LVPFPTET-EP-EIDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC 237 (480)
T ss_pred CCCccccc-CC-CceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC
Confidence 11100000 01 112357888878888887 333221112234444555556677899999999999998755433 1
Q ss_pred CceeeccccCCCCCC-CC-CCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012212 237 NILPIGPLLASNHSG-DL-DGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDF 314 (468)
Q Consensus 237 ~v~~vGpl~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 314 (468)
.++.|||+....... .. ....|..+.++.+||+.+++++||||+|||....+.+++.+++.+++..+.+|||++....
T Consensus 238 ~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~ 317 (480)
T PLN02555 238 PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPH 317 (480)
T ss_pred CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCc
Confidence 389999997642211 11 0222445678999999998888999999999889999999999999999999999987431
Q ss_pred CC--CcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHH
Q 012212 315 MN--GSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEA 392 (468)
Q Consensus 315 ~~--~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~ 392 (468)
.. .....+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+++++.
T Consensus 318 ~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~ 397 (480)
T PLN02555 318 KDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDV 397 (480)
T ss_pred ccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHH
Confidence 11 1123578899888999999999999999999999999999999999999999999999999999999999998886
Q ss_pred hhceeEeecc--CCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 393 WKIGLQFFAD--ENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 393 lG~g~~l~~~--~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
||+|+.+... ..+.++.++|.++|+++|.++ ++|+||++|+++.++++.+||||.+++++||+++.+.
T Consensus 398 ~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 398 FKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred hCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 7999999531 123489999999999999764 4999999999999999999999999999999999865
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-63 Score=482.05 Aligned_cols=444 Identities=23% Similarity=0.416 Sum_probs=330.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECCcchH-HHHHhhhhhccCCCCCeEEEEcCCCCCCCc-CCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQFIHK-KIIASLQEKAEDSSSQIKLVTIPDGLELQA-ADR 78 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 78 (468)
++.||+|+|++++||++|++.||+.|+.+| ..|||++++.+.. .+...... ......+++|..+|+...... ...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~-~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKS-IASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhh-ccCCCCCeEEEEeCCCCCCCccccc
Confidence 457999999999999999999999999998 9999999998652 22221110 001113699999996432111 012
Q ss_pred CCHHHHHHHHHHHhhH----HHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 79 EDPLKLGESVARAMRG----CLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
.+....+..+...+.+ .+.++++...... .++++||+|.+..|+..+|+.+|||.+.++++++.......++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 2344344334444533 3444444321111 234999999999999999999999999999999988777766553
Q ss_pred HhhcCCCCCCCcccccCCcccccCCC-ccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhh-
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEI-PAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPAC- 232 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~- 232 (468)
....... ...+ .. +....+|++ +.+...+++. +...... +..+.+......+++.+++||+++||.+..
T Consensus 159 ~~~~~~~--~~~~-~~-~~~~~vPgl~~~l~~~dlp~-~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 159 RHSKDTS--VFVR-NS-EEMLSIPGFVNPVPANVLPS-ALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred ccccccc--cCcC-CC-CCeEECCCCCCCCChHHCcc-hhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 3211000 0000 11 122357887 5677777773 3322211 233445555677899999999999998732
Q ss_pred -----ccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 012212 233 -----DLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFL 307 (468)
Q Consensus 233 -----~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l 307 (468)
+..|+++.|||++........ ...+..++++.+||+++++++||||||||....+.+++++++.+|+.++++|+
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~fl 308 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFL 308 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 345789999999864321110 00112346799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHH
Q 012212 308 WVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRN 387 (468)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 387 (468)
|++..... +....+|+++++++++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 309 W~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 387 (468)
T PLN02207 309 WSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAF 387 (468)
T ss_pred EEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHH
Confidence 99985311 11234889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeecc----CCCccCHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 388 YICEAWKIGLQFFAD----ENGIITRQEIQRKVLTLLK--NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 388 rv~~~lG~g~~l~~~----~~~~~t~~~l~~ai~~~l~--~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
++++.+|+|+.+..+ .++.++.++|+++|+++|+ +++||+||++|++++++++.+||||.+++++|+++++..
T Consensus 388 ~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 388 LMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 876646999987421 1234699999999999997 678999999999999999999999999999999998753
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=4.4e-63 Score=482.53 Aligned_cols=431 Identities=28% Similarity=0.502 Sum_probs=327.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--HHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATK--IAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~--L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
...||+|+|+|++||++|++.||+. |++||++|||++++.+...+...+ .....+++..+++++++.. ..+
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~glp~~~--~~~ 79 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSDGLPKDD--PRA 79 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCCCCCCCc--ccC
Confidence 4579999999999999999999999 569999999999998877664322 1124578887887766542 234
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
...++..+.+.+.+.++++++. .+||+||+|.+..|+..+|+.+|||.+.+++.++.......+++... +.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~ 150 (456)
T PLN02210 80 PETLLKSLNKVGAKNLSKIIEE-------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NS 150 (456)
T ss_pred HHHHHHHHHHhhhHHHHHHHhc-------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CC
Confidence 4455555555555555655544 46999999999999999999999999999998888777665533211 11
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc---CCC
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL---IPN 237 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~---~p~ 237 (468)
.+.. ........+|+++.++..+++. ++..... ..+.....+..+....++.+++||+.++|....+. .++
T Consensus 151 ~~~~----~~~~~~~~~Pgl~~~~~~dl~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 224 (456)
T PLN02210 151 FPDL----EDLNQTVELPALPLLEVRDLPS-FMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKP 224 (456)
T ss_pred CCcc----cccCCeeeCCCCCCCChhhCCh-hhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCC
Confidence 1100 0001123467777666677663 2222211 11112222333445678999999999999876554 357
Q ss_pred ceeeccccCCC---CCCC---C--CCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012212 238 ILPIGPLLASN---HSGD---L--DGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWV 309 (468)
Q Consensus 238 v~~vGpl~~~~---~~~~---~--~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~ 309 (468)
+++|||++... .... . ....|..+.++.+|++.+++++||||+|||....+.+++++++.+|+..+.+|+|+
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~ 304 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWV 304 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999997521 1110 0 01235566789999999888899999999998889999999999999999999999
Q ss_pred EcCCCCCCcccCCchhHHHHh-CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHH
Q 012212 310 IRQDFMNGSRAKFPDGFIERV-SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNY 388 (468)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 388 (468)
+.... ....+..+.++. ++|+.+++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++
T Consensus 305 ~~~~~----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~ 380 (456)
T PLN02210 305 IRPKE----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARL 380 (456)
T ss_pred EeCCc----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHH
Confidence 97531 112334566666 4888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhceeEeeccC-CCccCHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 389 ICEAWKIGLQFFADE-NGIITRQEIQRKVLTLLKNDD---IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 389 v~~~lG~g~~l~~~~-~~~~t~~~l~~ai~~~l~~~~---~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
+++.||+|+.+...+ ++.++.++|+++|+++|.+++ +|+||++|++..++++.+||||.+++++||++++.
T Consensus 381 ~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 381 LVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDITI 455 (456)
T ss_pred HHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 987469999997532 345999999999999998765 99999999999999999999999999999998863
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.9e-63 Score=477.96 Aligned_cols=432 Identities=27% Similarity=0.501 Sum_probs=331.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcc-hHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC-CCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFI-HKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA-DRE 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~-~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 79 (468)
++.||+++|+++.||++|++.||+.|+. +|+.|||++++.+ ...+.... ....+++|+.++++++.... ...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-----~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-----NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-----CCCCCEEEEEcCCCCCCccccccc
Confidence 4469999999999999999999999996 7999999999864 22211110 11136999999987765421 233
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcC
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAG 159 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 159 (468)
+....+..+...+.+.++++++.+.... .++++||+|.+..|+..+|+.+|||.+.++++++......++++. +
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~ 150 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----G 150 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----c
Confidence 4555566666677888888888764322 345999999999999999999999999999999988777665331 1
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhc--cccEEEEcCcccCChhhhccC--
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVK--ISNWIINNSVYELDSPACDLI-- 235 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~-- 235 (468)
. + ....+|+++.++..+++ .++............+.+..+... .++.+++||+.+||....+..
T Consensus 151 ~-~----------~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 151 N-N----------SVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred C-C----------CeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 0 0 01246777767777777 333221111122233334444333 347999999999998776655
Q ss_pred CCceeeccccCCCCC-CCCCC---CCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012212 236 PNILPIGPLLASNHS-GDLDG---NFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIR 311 (468)
Q Consensus 236 p~v~~vGpl~~~~~~-~~~~~---~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 311 (468)
..++.|||++..... ....+ ..+..+.++.+||+.+++++||||+|||...++.+++++++.+|+.++.+|+|++.
T Consensus 219 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 219 IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 369999999753210 00000 11333457999999998889999999999999999999999999999999999997
Q ss_pred CCCCC------Cc--ccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchh
Q 012212 312 QDFMN------GS--RAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQY 383 (468)
Q Consensus 312 ~~~~~------~~--~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~ 383 (468)
..... +. ...+++++.|+.++|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++|+++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 53110 00 11347889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 384 QNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD--IRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 384 ~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~--~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
.||+++++.||+|+.+..++++..+.++|+++|+++|+|+. ||+||++|+++++++..+||||.+++++||+++
T Consensus 379 ~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999988568888886544345799999999999998765 899999999999999999999999999999876
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.8e-63 Score=481.42 Aligned_cols=445 Identities=25% Similarity=0.412 Sum_probs=326.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCC----CCCCCcCC-
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPD----GLELQAAD- 77 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~- 77 (468)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.... .....+++..+|- +++.+...
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-----~~~~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-----SKHPSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-----ccCCCeeEEeCCCCCcCCCCCCCcCh
Confidence 4689999999999999999999999999999999999999887776532 1113577765441 22222111
Q ss_pred ---CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 78 ---REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
..+....+......+.+.+.++++.+ . .+|++||+|.+..|+..+|+.+|||++.+++++++....+.+++.
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSH---P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhC---C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 11111222222333444455555442 2 467999999999999999999999999999999999888777543
Q ss_pred HhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL 234 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 234 (468)
..+..... .. . .....+..+|+++.++..+++. +.............+.+.......++.+++||+.+||....+.
T Consensus 158 ~~~~~~~~-~~-~-~~~~~~~~iPg~~~~~~~dlp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 233 (477)
T PLN02863 158 EMPTKINP-DD-Q-NEILSFSKIPNCPKYPWWQISS-LYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEH 233 (477)
T ss_pred cccccccc-cc-c-ccccccCCCCCCCCcChHhCch-hhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHH
Confidence 21110000 00 0 0000122467777777777663 2211101112233333444445577889999999999876543
Q ss_pred C------CCceeeccccCCCCCCC---CC-CCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012212 235 I------PNILPIGPLLASNHSGD---LD-GNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQK 304 (468)
Q Consensus 235 ~------p~v~~vGpl~~~~~~~~---~~-~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (468)
. ++++.|||++....... .. ...+..++++.+||+.+++++||||||||....+.+++.+++.+|+..+.
T Consensus 234 ~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~ 313 (477)
T PLN02863 234 LKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGV 313 (477)
T ss_pred HHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCC
Confidence 2 57999999975332110 00 11111346799999999888999999999988899999999999999999
Q ss_pred CEEEEEcCCCCC-CcccCCchhHHHHhCC-CceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccch
Q 012212 305 PFLWVIRQDFMN-GSRAKFPDGFIERVSN-RGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQ 382 (468)
Q Consensus 305 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ 382 (468)
+|+|+++..... .....+|+++.+++.+ ++++.+|+||.+||.|+++++||||||+||++||+++|||||++|+++||
T Consensus 314 ~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 393 (477)
T PLN02863 314 HFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ 393 (477)
T ss_pred cEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccc
Confidence 999999743211 1123588899888744 55566999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 383 YQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLL-KNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 383 ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l-~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
+.||+++++.||+|+.+...+.+..+.+++.++|+++| ++++||+||++++++.++++.+||||.+++++||+.+++..
T Consensus 394 ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 394 FVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred hhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 99999976547999999653334578999999999998 67889999999999999999999999999999999998653
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.4e-62 Score=482.51 Aligned_cols=443 Identities=25% Similarity=0.434 Sum_probs=329.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECCcchHHHH--Hhhhhhcc-CCCCCeEEEEcCCCCCCCcCCC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQFIHKKII--ASLQEKAE-DSSSQIKLVTIPDGLELQAADR 78 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~--~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 78 (468)
++||+++|+++.||++|++.||+.|+.+| ..|||++++.+...+. ........ ....+++|+.+|.+..... ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-ED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-cc
Confidence 36999999999999999999999999998 8899999987754321 10000000 0123699999997764221 11
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhC-C-CCCCc-eEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhH
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQS-N-DCEPI-RCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKL 155 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~-~~~~p-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 155 (468)
..+.. +...+.+.+++.++++... . ...+| ++||+|.+..|+..+|+.+|||++.++++++.......++|..
T Consensus 81 ~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 81 PTFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 12222 2334444555555554321 0 00134 8999999999999999999999999999999998888776654
Q ss_pred hhcCCCCCCCcccccCCcccccCCCc-cCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhc-
Q 012212 156 LEAGIIDPNGFAILNDGLISLSDEIP-AWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACD- 233 (468)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~- 233 (468)
...+..+..+.+ .. .....+|+++ +++..+++ .+...+ .....+.+....+..++.+++||+.+||.....
T Consensus 157 ~~~~~~~~~~~~-~~-~~~v~iPgl~~pl~~~dlp-~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 157 YDEKKYDVSELE-DS-EVELDVPSLTRPYPVKCLP-SVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred ccccccCccccC-CC-CceeECCCCCCCCCHHHCC-CcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 322111100011 11 0122477773 56666766 323221 223444455566778999999999999985432
Q ss_pred ------cCCCceeeccccC-CCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCE
Q 012212 234 ------LIPNILPIGPLLA-SNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPF 306 (468)
Q Consensus 234 ------~~p~v~~vGpl~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 306 (468)
..|+++.|||++. ..... ......+.++.+|++++++++||||+|||....+.+++++++.+++.++++|
T Consensus 230 l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~f 306 (481)
T PLN02554 230 FSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRF 306 (481)
T ss_pred HHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCe
Confidence 3478999999943 22111 0001245689999999988889999999998889999999999999999999
Q ss_pred EEEEcCCCC----------CCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecc
Q 012212 307 LWVIRQDFM----------NGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCW 376 (468)
Q Consensus 307 l~~~~~~~~----------~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~ 376 (468)
+|++..... .+....+|+++.+++++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++
T Consensus 307 lW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~ 386 (481)
T PLN02554 307 LWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAW 386 (481)
T ss_pred EEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEec
Confidence 999975210 0001126899999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHH-HHHHHhhceeEeecc--------CCCccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhcCCCch
Q 012212 377 PYFSDQYQNRN-YICEAWKIGLQFFAD--------ENGIITRQEIQRKVLTLLK-NDDIRSNSLKLKEVARKSLLGGGSS 446 (468)
Q Consensus 377 P~~~DQ~~na~-rv~~~lG~g~~l~~~--------~~~~~t~~~l~~ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g~~ 446 (468)
|+++||+.||+ ++++ +|+|+.++.. +++.++.++|+++|+++|+ |++||+||+++++++++++.+||||
T Consensus 387 P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss 465 (481)
T PLN02554 387 PLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSS 465 (481)
T ss_pred CccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChH
Confidence 99999999995 5777 6999999741 1235899999999999996 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 012212 447 FRNFESFISDIKMLIS 462 (468)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (468)
.+++++||++++.+++
T Consensus 466 ~~~l~~lv~~~~~~~~ 481 (481)
T PLN02554 466 HTALKKFIQDVTKNIA 481 (481)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999998764
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-61 Score=470.34 Aligned_cols=429 Identities=26% Similarity=0.438 Sum_probs=328.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCC----CCCCCcCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPD----GLELQAAD 77 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~ 77 (468)
.+.||+++|++++||++|++.||+.|+ .+|++|||++++.+...+.+... ...++++..+|. ++++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCCC--
Confidence 457999999999999999999999998 78999999999988765543221 113588888884 332111
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhh
Q 012212 78 REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
.+....+..+...+.+.++++++.+. .+|++||+|.+..|+..+|+.+|||++.++++++.......++|....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 77 -AHVVTKIGVIMREAVPTLRSKIAEMH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -ccHHHHHHHHHHHhHHHHHHHHHhcC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 12222333334455667777776642 468999999999999999999999999999999988776665553221
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC--
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI-- 235 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-- 235 (468)
..... .. . ......+|+++.++..+++. .+..+.. ..+..+.+.......++.+++||+.+||....+..
T Consensus 151 ~~~~~---~~-~-~~~~~~iPg~~~l~~~dlp~-~~~~~~~--~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 151 DIKEE---HT-V-QRKPLAMPGCEPVRFEDTLD-AYLVPDE--PVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred ccccc---cc-c-CCCCcccCCCCccCHHHhhH-hhcCCCc--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 10000 00 0 01123477777666666662 1212211 23344445555677899999999999998765532
Q ss_pred ---------CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCE
Q 012212 236 ---------PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPF 306 (468)
Q Consensus 236 ---------p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 306 (468)
+.++.|||++...... ..+.++.+||+.+++++||||+|||...++.+++++++.+|+.++++|
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 295 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF 295 (481)
T ss_pred ccccccccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCE
Confidence 4699999997642111 235569999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCC---------------C-cccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhc
Q 012212 307 LWVIRQDFMN---------------G-SRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSM 369 (468)
Q Consensus 307 l~~~~~~~~~---------------~-~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~ 369 (468)
+|++....+. + ....+|++|.|++.++..++ +|+||.+||+|+++++||||||+||+.||+++
T Consensus 296 lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~ 375 (481)
T PLN02992 296 VWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVG 375 (481)
T ss_pred EEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHc
Confidence 9999642110 0 12248899999987666555 99999999999999999999999999999999
Q ss_pred CCceeccccccchhhhHHHHH-HHhhceeEeeccCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhc--CC
Q 012212 370 GVPFLCWPYFSDQYQNRNYIC-EAWKIGLQFFADENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLL--GG 443 (468)
Q Consensus 370 GvP~v~~P~~~DQ~~na~rv~-~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~--~~ 443 (468)
|||||++|+++||+.||++++ + +|+|+.++.. ++.++.++|+++|+++|.++ ++|++++++++++++++. +|
T Consensus 376 GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~G 453 (481)
T PLN02992 376 GVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGG 453 (481)
T ss_pred CCCEEecCccchhHHHHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999995 6 7999999752 23489999999999999763 699999999999999994 59
Q ss_pred CchHHHHHHHHHHHHhhc
Q 012212 444 GSSFRNFESFISDIKMLI 461 (468)
Q Consensus 444 g~~~~~~~~~~~~~~~~~ 461 (468)
|||.+++++|+++++...
T Consensus 454 GSS~~~l~~~v~~~~~~~ 471 (481)
T PLN02992 454 GVAHESLCRVTKECQRFL 471 (481)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 999999999999988543
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-61 Score=470.69 Aligned_cols=436 Identities=28% Similarity=0.421 Sum_probs=323.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC----CCCCCCcCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP----DGLELQAADR 78 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~ 78 (468)
.+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+..... .....++++.+| +++++.....
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCCCeeEEECCCCccCCCCCCcccc
Confidence 56799999999999999999999999999999999999988766653211 111358999888 5555432111
Q ss_pred CCH----HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 79 EDP----LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 79 ~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
.+. ..++....+.+++.++++++. .++++||+|.+..|+..+|+.+|||+++++++++.......+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLET-------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHh-------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 122 123334445566666666655 358999999999999999999999999999999887776554432
Q ss_pred HhhcCCCCCCCcccccCCcccccCCC----c--cCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCC
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEI----P--AWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELD 228 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 228 (468)
....+... .........|+. + .+...+++ .+.............+.+....+.+++.+++||+.+||
T Consensus 154 ~~~~~~~~------~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE 226 (472)
T PLN02670 154 LMEGGDLR------STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFE 226 (472)
T ss_pred hhhcccCC------CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHh
Confidence 22222211 100111112322 1 12333444 22211110111122233444456688999999999999
Q ss_pred hhhhccC-----CCceeeccccCCC-CCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC
Q 012212 229 SPACDLI-----PNILPIGPLLASN-HSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL 302 (468)
Q Consensus 229 ~~~~~~~-----p~v~~vGpl~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~ 302 (468)
....+.. ++++.|||++... ....+.....+..+++.+||+++++++||||||||...++.+++++++.+|+.+
T Consensus 227 ~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 227 PEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 8765543 5799999997531 111000000011256899999998889999999999999999999999999999
Q ss_pred CCCEEEEEcCCCC--CCcccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc
Q 012212 303 QKPFLWVIRQDFM--NGSRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF 379 (468)
Q Consensus 303 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~ 379 (468)
+++|+|++....+ .+....+|++|.+++.++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 9999999985311 1112358999999988887775 999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhceeEeeccC-CCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 380 SDQYQNRNYICEAWKIGLQFFADE-NGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 380 ~DQ~~na~rv~~~lG~g~~l~~~~-~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
+||+.||+++++ +|+|+.++..+ ++.++.++|+++|+++|.|+ +||+||+++++++++ .+....++++|++
T Consensus 387 ~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~ 461 (472)
T PLN02670 387 NEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVH 461 (472)
T ss_pred hccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHH
Confidence 999999999998 59999997533 34589999999999999876 699999999999998 7888999999999
Q ss_pred HHHhhc
Q 012212 456 DIKMLI 461 (468)
Q Consensus 456 ~~~~~~ 461 (468)
.+.+++
T Consensus 462 ~l~~~~ 467 (472)
T PLN02670 462 YLRENR 467 (472)
T ss_pred HHHHhc
Confidence 999887
No 12
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-61 Score=474.52 Aligned_cols=432 Identities=29% Similarity=0.475 Sum_probs=330.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
...||+++|+|+.||++|++.||+.|+.| ||+|||++++.+...+.+.. ...+++|+.+|++.+.......+
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~------~~~gi~fv~lp~~~p~~~~~~~~ 82 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP------KPDNIRFATIPNVIPSELVRAAD 82 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC------CCCCEEEEECCCCCCCccccccC
Confidence 46899999999999999999999999999 99999999999888777632 11469999999765443212234
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
...++..+.+.+.+.++++++.+. .++|+||+|.++.|+..+|+.+|||++.++++++.......+++.....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 445555555566677777777653 358999999999999999999999999999999877776666543322111
Q ss_pred CCCCCcccc-cCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc-----
Q 012212 161 IDPNGFAIL-NDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL----- 234 (468)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~----- 234 (468)
.+.. .+ . .......+|+++.+...+++ .+.... .......+.+......+++.+++||+.+||....+.
T Consensus 158 ~~~~-~~-~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 232 (459)
T PLN02448 158 FPVE-LS-ESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF 232 (459)
T ss_pred CCCc-cc-cccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc
Confidence 1100 00 0 01112246777666666666 333222 112334445555566678899999999999864332
Q ss_pred CCCceeeccccCCCCCCCCCCCCC--CCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 012212 235 IPNILPIGPLLASNHSGDLDGNFW--SEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQ 312 (468)
Q Consensus 235 ~p~v~~vGpl~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~ 312 (468)
.++++.|||+.............+ ..+.++.+|++.++++++|||||||....+.+++++++.+|+..+.+|||++..
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 357999999976422110001101 123478899999888899999999998888999999999999999999998763
Q ss_pred CCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHH
Q 012212 313 DFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEA 392 (468)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~ 392 (468)
. ..++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+++++.
T Consensus 313 ~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 383 (459)
T PLN02448 313 E---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED 383 (459)
T ss_pred c---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 2 1245555667899999999999999999999999999999999999999999999999999999999876
Q ss_pred hhceeEeecc--CCCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 393 WKIGLQFFAD--ENGIITRQEIQRKVLTLLKND-----DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 393 lG~g~~l~~~--~~~~~t~~~l~~ai~~~l~~~-----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
||+|+.+... +++.+++++|+++|+++|.|+ +||+||++|+++++.++.+||||.+++++||+.+++
T Consensus 384 ~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 384 WKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred hCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 7999998642 123479999999999999864 699999999999999999999999999999999874
No 13
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.7e-61 Score=474.81 Aligned_cols=444 Identities=26% Similarity=0.461 Sum_probs=318.1
Q ss_pred CC-CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhcc-CCC--CCeEEEEcC---CCCCC
Q 012212 1 MS-RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAE-DSS--SQIKLVTIP---DGLEL 73 (468)
Q Consensus 1 m~-~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~-~~~--~~i~~~~~~---~~~~~ 73 (468)
|+ ++.||+|+|+|+.||++|++.||+.|+.|||+|||++++.+...+++.+..... ... ..+.+..+| .+++.
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 55 467999999999999999999999999999999999999998887776543210 111 134445555 33433
Q ss_pred CcCC--------CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHH
Q 012212 74 QAAD--------REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGS 145 (468)
Q Consensus 74 ~~~~--------~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (468)
.... ......++..+..... .+.+.++++... .+||+||+|.++.|+..+|+.+|||.+++++++++.
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~---~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTK-YFKDQLEKLLET---TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHH-HHHHHHHHHHhc---CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 2110 0112233444432222 233333333222 469999999999999999999999999999998877
Q ss_pred HHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCcc---CcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEc
Q 012212 146 LALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPA---WKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINN 222 (468)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (468)
......+....+..... .. .....+|+++. +...+++ .. .. ...+...+....+....++.+++|
T Consensus 157 ~~~~~~~~~~~~~~~~~------~~-~~~~~~pg~p~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~~~~~~~vl~N 224 (482)
T PLN03007 157 LCASYCIRVHKPQKKVA------SS-SEPFVIPDLPGDIVITEEQIN-DA--DE--ESPMGKFMKEVRESEVKSFGVLVN 224 (482)
T ss_pred HHHHHHHHhcccccccC------CC-CceeeCCCCCCccccCHHhcC-CC--CC--chhHHHHHHHHHhhcccCCEEEEE
Confidence 65544322111100000 00 01112455542 1222222 11 11 112233334444567788999999
Q ss_pred CcccCChhhhccC-----CCceeeccccCCCCCCC---C-CCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHH
Q 012212 223 SVYELDSPACDLI-----PNILPIGPLLASNHSGD---L-DGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFA 293 (468)
Q Consensus 223 ~~~~le~~~~~~~-----p~v~~vGpl~~~~~~~~---~-~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~ 293 (468)
|+.+||.+..+.. ..+++|||+........ . ....+..+.++.+||+.+++++||||||||....+.+.+.
T Consensus 225 t~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~ 304 (482)
T PLN03007 225 SFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLF 304 (482)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHH
Confidence 9999998755544 36899999865322100 0 0111223567999999998889999999999888899999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCC-CcccCCchhHHHHh-CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCC
Q 012212 294 ELALGLESLQKPFLWVIRQDFMN-GSRAKFPDGFIERV-SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGV 371 (468)
Q Consensus 294 ~~~~a~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~Gv 371 (468)
+++.+|+.++++|+|+++...+. +....+|+++.+++ +.|+++.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 305 ~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GV 384 (482)
T PLN03007 305 EIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGL 384 (482)
T ss_pred HHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCC
Confidence 99999999999999999864221 11235888998886 56777779999999999999999999999999999999999
Q ss_pred ceeccccccchhhhHHHHHHHhhceeEeecc-----CCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCC
Q 012212 372 PFLCWPYFSDQYQNRNYICEAWKIGLQFFAD-----ENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGG 443 (468)
Q Consensus 372 P~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~-----~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~ 443 (468)
|||++|+++||+.||+++++.+++|+.+... +.+.++.++|+++|+++|.|+ +||+||+++++.+++++.+|
T Consensus 385 P~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 385 PMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred CeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987545666665321 223489999999999999988 79999999999999999999
Q ss_pred CchHHHHHHHHHHHHhh
Q 012212 444 GSSFRNFESFISDIKML 460 (468)
Q Consensus 444 g~~~~~~~~~~~~~~~~ 460 (468)
|||.+++++||+.+.+.
T Consensus 465 GsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 465 GSSFNDLNKFMEELNSR 481 (482)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.4e-61 Score=469.52 Aligned_cols=439 Identities=24% Similarity=0.419 Sum_probs=333.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCC----CEEEEEECCcchH----HHHHhhhhhccCCCCCeEEEEcCCCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERA----IKVTVVNTQFIHK----KIIASLQEKAEDSSSQIKLVTIPDGLELQ 74 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG----H~Vt~~~~~~~~~----~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 74 (468)
++.||+|+|++++||++|++.||+.|+.|| +.|||++++.+.. .+........ .....++|..+|.+..+.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCCCCCC
Confidence 446999999999999999999999999997 7999999987532 3333211101 111259999999764322
Q ss_pred cCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 75 AADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
..++...++..+...+.+.++++++.+. .++++||+|.+..|+..+|+.+|||++.++++++.......++|.
T Consensus 81 --~~e~~~~~~~~~~~~~~~~l~~~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 81 --DAAGVEEFISRYIQLHAPHVRAAIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred --ccccHHHHHHHHHHhhhHHHHHHHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 2224445555555666777777776651 347999999999999999999999999999999988887777654
Q ss_pred HhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL 234 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 234 (468)
.... .. .... ... ....+|+++.++..+++ .+...... ..+..+....+...+++.+++||+.+||....+.
T Consensus 154 ~~~~--~~-~~~~-~~~-~~~~iPGlp~l~~~dlp-~~~~~~~~--~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 154 LDEE--VA-VEFE-EME-GAVDVPGLPPVPASSLP-APVMDKKS--PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hccc--cc-Cccc-ccC-cceecCCCCCCChHHCC-chhcCCCc--HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 3211 00 0011 100 11247888777777777 33322211 1122333344556789999999999999865432
Q ss_pred C-----------CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC
Q 012212 235 I-----------PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ 303 (468)
Q Consensus 235 ~-----------p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (468)
. |+++.|||++...... ..+..++++.+||+.+++++||||+|||....+.+++.+++.+|+.++
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~ 301 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSG 301 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcC
Confidence 2 5799999998532111 112356679999999988899999999998889999999999999999
Q ss_pred CCEEEEEcCCCCC--------CcccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCcee
Q 012212 304 KPFLWVIRQDFMN--------GSRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFL 374 (468)
Q Consensus 304 ~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v 374 (468)
.+|+|++...... +....+|+++.+++.++..++ +|+||.+||.|+++++||||||+||++||+++|||||
T Consensus 302 ~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l 381 (480)
T PLN00164 302 HRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMA 381 (480)
T ss_pred CCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEE
Confidence 9999999853210 111247889999988877777 9999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeEeeccC--CCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhcCCCchH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFFADE--NGIITRQEIQRKVLTLLKND-----DIRSNSLKLKEVARKSLLGGGSSF 447 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~~~~--~~~~t~~~l~~ai~~~l~~~-----~~r~~a~~l~~~~~~~~~~~g~~~ 447 (468)
++|+++||+.||+++++.||+|+.+..++ ++.++.++|.++|+++|.|+ ++|++|++|++++++++.+||||.
T Consensus 382 ~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~ 461 (480)
T PLN00164 382 PWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSY 461 (480)
T ss_pred eCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999988754479999986431 23479999999999999764 389999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 012212 448 RNFESFISDIKMLI 461 (468)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (468)
+++++|++++...+
T Consensus 462 ~~l~~~v~~~~~~~ 475 (480)
T PLN00164 462 AALQRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998554
No 15
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-60 Score=462.29 Aligned_cols=415 Identities=22% Similarity=0.375 Sum_probs=307.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC----CCCCCCcC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP----DGLELQAA 76 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~ 76 (468)
|..+.||+++|+++.||++|++.||+.|++|||+|||++++.+...+.+.+ .....+++..++ ++++....
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-----a~~~~i~~~~l~~p~~dgLp~g~~ 75 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-----LFPDSIVFHPLTIPPVNGLPAGAE 75 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-----CCCCceEEEEeCCCCccCCCCCcc
Confidence 667889999999999999999999999999999999999998877766533 111346666543 34443321
Q ss_pred CCCCHH-HHHHHH---HHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhh
Q 012212 77 DREDPL-KLGESV---ARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQF 152 (468)
Q Consensus 77 ~~~~~~-~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (468)
...++. .....+ ...+.+.++++++. .++|+||+| +..|+..+|+.+|||++.++++++.... ..++
T Consensus 76 ~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~-------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~ 146 (442)
T PLN02208 76 TTSDIPISMDNLLSEALDLTRDQVEAAVRA-------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV 146 (442)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhh-------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc
Confidence 111222 111222 22333444444433 468999999 5789999999999999999999887653 3332
Q ss_pred hhHhhcCCCCCCCcccccCCcccccCCCcc----CcccccCcCCCCCChhHHHHHHHHHH-HHHhhccccEEEEcCcccC
Q 012212 153 PKLLEAGIIDPNGFAILNDGLISLSDEIPA----WKRNEYTWSFPDEPSEQKILLGIICA-VIQAVKISNWIINNSVYEL 227 (468)
Q Consensus 153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 227 (468)
+. +..+ ...|+++. ++..+++ .+... ...+..+.+ ..+...+++.+++||+.+|
T Consensus 147 ~~----~~~~------------~~~pglp~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~vl~Ntf~eL 205 (442)
T PLN02208 147 PG----GKLG------------VPPPGYPSSKVLFRENDAH-ALATL----SIFYKRLYHQITTGLKSCDVIALRTCKEI 205 (442)
T ss_pred Cc----cccC------------CCCCCCCCcccccCHHHcC-ccccc----chHHHHHHHHHHhhhccCCEEEEECHHHH
Confidence 21 0000 01345543 2233344 22111 112222222 2245668999999999999
Q ss_pred Chhhhc-----cCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC
Q 012212 228 DSPACD-----LIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL 302 (468)
Q Consensus 228 e~~~~~-----~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~ 302 (468)
|....+ +.|+++.|||++...... ...+.++.+||+++++++||||||||...++.+++.+++.+++..
T Consensus 206 E~~~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s 279 (442)
T PLN02208 206 EGKFCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELT 279 (442)
T ss_pred HHHHHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhC
Confidence 986543 347999999998653211 125678999999998889999999999888999999999998888
Q ss_pred CCCEEEEEcCCCC-CCcccCCchhHHHHhCC-CceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccccc
Q 012212 303 QKPFLWVIRQDFM-NGSRAKFPDGFIERVSN-RGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 303 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~ 380 (468)
+.+++|++....+ .+....+|++|.+++.+ |+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++
T Consensus 280 ~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~ 359 (442)
T PLN02208 280 GLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLS 359 (442)
T ss_pred CCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcch
Confidence 8999999985421 11224689999998755 555559999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 381 DQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD-----IRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 381 DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~-----~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
||+.||+++++.+|+|+.++..+++.++.++|+++|+++|+|++ +|++++++++.+.+ +|||.+++++||+
T Consensus 360 DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~ 435 (442)
T PLN02208 360 DQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVE 435 (442)
T ss_pred hhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 99999998765469999997643456899999999999997653 99999999999854 7899999999999
Q ss_pred HHHhh
Q 012212 456 DIKML 460 (468)
Q Consensus 456 ~~~~~ 460 (468)
++++.
T Consensus 436 ~l~~~ 440 (442)
T PLN02208 436 ELQEY 440 (442)
T ss_pred HHHHh
Confidence 99764
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=9.4e-61 Score=462.16 Aligned_cols=430 Identities=25% Similarity=0.452 Sum_probs=319.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEE--EECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC--C
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTV--VNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA--D 77 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~--~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~ 77 (468)
..||+++|++++||++|++.||+.|+.+| +.||+ ++++.+...+.+...... ....+++|+.+|.+...... .
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVS-SSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhcccc-CCCCCeEEEEcCCCCCCCCcccc
Confidence 36999999999999999999999999998 55666 444432222221110100 11236999999976532221 1
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhh
Q 012212 78 REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
..+....+..+...+.+.++++++++... .++++||+|.+..|+..+|+.+|||.+.++++++.......++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN---FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC---CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 11233344444556677788888776321 345999999999999999999999999999999988887777554221
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC--
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI-- 235 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-- 235 (468)
. .+... ........+|+++.++..+++. +...+. ......+.+....+..++.+++||+.+||....+..
T Consensus 159 ~--~~~~~---~~~~~~v~iPg~p~l~~~dlp~-~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 159 T--TPGKN---LKDIPTVHIPGVPPMKGSDMPK-AVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred c--ccccc---cccCCeecCCCCCCCChHHCch-hhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 1 00000 0011123578888878888773 332221 123344455556677889999999999998654322
Q ss_pred ----CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012212 236 ----PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIR 311 (468)
Q Consensus 236 ----p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 311 (468)
++++.|||++....... .. .+ .+.++.+||+.+++++||||||||...++.+++++++.+|+.++++|+|++.
T Consensus 231 ~~~~~~v~~vGPl~~~~~~~~-~~-~~-~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r 307 (451)
T PLN03004 231 ELCFRNIYPIGPLIVNGRIED-RN-DN-KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVR 307 (451)
T ss_pred cCCCCCEEEEeeeccCccccc-cc-cc-hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 57999999975322110 01 11 2356999999998889999999999999999999999999999999999998
Q ss_pred CCCCCC----ccc-CCchhHHHHhCC-CceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhh
Q 012212 312 QDFMNG----SRA-KFPDGFIERVSN-RGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQN 385 (468)
Q Consensus 312 ~~~~~~----~~~-~~~~~~~~~~~~-nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~n 385 (468)
.....+ ... .+|++|++++.+ |+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 308 ~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~n 387 (451)
T PLN03004 308 NPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387 (451)
T ss_pred CCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhh
Confidence 531100 112 288999999865 55666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHH
Q 012212 386 RNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFR 448 (468)
Q Consensus 386 a~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 448 (468)
|+++++.||+|+.++..+.+.++.++|+++|+++|+|++||++++++++..+.++.+||||.+
T Consensus 388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999975479999997543345899999999999999999999999999999999999999864
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-60 Score=467.46 Aligned_cols=447 Identities=24% Similarity=0.416 Sum_probs=325.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCC---CEEEEEECCcchH-HHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERA---IKVTVVNTQFIHK-KIIASLQEKAEDSSSQIKLVTIPDGLELQAAD 77 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG---H~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 77 (468)
+++.||+|+|+|++||++|++.||+.|+.+| +.||++++..... .......... ...++++|+.+|.+..+....
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI-ASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc-cCCCCeEEEECCCCCCCcccc
Confidence 3567999999999999999999999999998 4577777654322 1111110000 111369999999654221100
Q ss_pred --CCCHHHHHHHHHHHhhHHHHHHHHHHhhCC-C-CC-CceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhh
Q 012212 78 --REDPLKLGESVARAMRGCLRDLIEKINQSN-D-CE-PIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQF 152 (468)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~-~~-~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (468)
.......+..+...+.+.+++.++.+.... . .. ++++||+|.+..|+..+|+.+|||.++++++++.......++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 112222333344556666777776653211 0 01 459999999999999999999999999999999888877766
Q ss_pred hhHhhcCCCCCCCcccccCCcccccCCC-ccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhh
Q 012212 153 PKLLEAGIIDPNGFAILNDGLISLSDEI-PAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPA 231 (468)
Q Consensus 153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 231 (468)
|..... .. ..++.........+|++ +.++..+++ .+..... .+..+.+..+....++.+++||+.+||...
T Consensus 160 ~~~~~~--~~-~~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 160 PERHRK--TA-SEFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHhccc--cc-cccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 543211 00 00000000112246777 345666665 2222211 122344555567789999999999999865
Q ss_pred hcc-------CCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012212 232 CDL-------IPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQK 304 (468)
Q Consensus 232 ~~~-------~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (468)
.+. .|++++|||++....... .......+.++.+||+.+++++||||+|||....+.+++.+++.+|+.++.
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~-~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTS-PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccC-CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 543 278999999986432110 010011235799999999888999999999988899999999999999999
Q ss_pred CEEEEEcCCCCC--CcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccch
Q 012212 305 PFLWVIRQDFMN--GSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQ 382 (468)
Q Consensus 305 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ 382 (468)
+|||+++..... +....+|+++.|++.+++++++|+||.+||+|++|++||||||+||++||+++|||||++|+++||
T Consensus 311 ~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 390 (475)
T PLN02167 311 RFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ 390 (475)
T ss_pred cEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 999999753211 112348899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHH-HHHHhhceeEeecc----CCCccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 012212 383 YQNRNY-ICEAWKIGLQFFAD----ENGIITRQEIQRKVLTLLKND-DIRSNSLKLKEVARKSLLGGGSSFRNFESFISD 456 (468)
Q Consensus 383 ~~na~r-v~~~lG~g~~l~~~----~~~~~t~~~l~~ai~~~l~~~-~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (468)
+.||++ +++ +|+|+.+... +++.++.++|+++|+++|.++ +||+||+++++++++++.+||||.+++++||++
T Consensus 391 ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~ 469 (475)
T PLN02167 391 QLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDD 469 (475)
T ss_pred hhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999976 566 7999998642 123479999999999999765 799999999999999999999999999999999
Q ss_pred HHh
Q 012212 457 IKM 459 (468)
Q Consensus 457 ~~~ 459 (468)
++.
T Consensus 470 i~~ 472 (475)
T PLN02167 470 LLG 472 (475)
T ss_pred HHh
Confidence 875
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-60 Score=455.49 Aligned_cols=423 Identities=26% Similarity=0.423 Sum_probs=315.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC--CCCCCCcCCCC-
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP--DGLELQAADRE- 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~- 79 (468)
.++||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+... ... .....+.+..+| ++++.......
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~-~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLF-PHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccC-CCCceEEEEECCCcCCCCCccccccc
Confidence 468999999999999999999999999999999999999876655431 100 001237777777 55544311111
Q ss_pred ---CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 80 ---DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
.....+....+.+.+.++++++. .+||+||+|+ ..|+..+|+.+|||.+.++++++........ +
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~-------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~--- 148 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRA-------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P--- 148 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHh-------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c---
Confidence 11122223333455667777665 3589999995 7799999999999999999999877666542 1
Q ss_pred hcCCCCCCCcccccCCcccccCCCcc----CcccccCcCCCC-CC-hhHHHHHHHHHHHHHhhccccEEEEcCcccCChh
Q 012212 157 EAGIIDPNGFAILNDGLISLSDEIPA----WKRNEYTWSFPD-EP-SEQKILLGIICAVIQAVKISNWIINNSVYELDSP 230 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 230 (468)
.+..+ ...|+++. ++..+++. +.. .. ...........+..+.+..++.+++||+.+||..
T Consensus 149 -~~~~~------------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~ 214 (453)
T PLN02764 149 -GGELG------------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGN 214 (453)
T ss_pred -cccCC------------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHH
Confidence 01100 01244442 33333332 111 01 0111122223333355678899999999999987
Q ss_pred hhccC-----CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCC
Q 012212 231 ACDLI-----PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKP 305 (468)
Q Consensus 231 ~~~~~-----p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 305 (468)
..+.. ++++.|||++...... ...+.++.+||+.+++++||||+|||....+.+++.+++.+|+..+.+
T Consensus 215 ~~~~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~p 288 (453)
T PLN02764 215 FCDYIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSP 288 (453)
T ss_pred HHHHHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 65443 5799999997543111 113567999999999999999999999888999999999999999999
Q ss_pred EEEEEcCCCCC-CcccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchh
Q 012212 306 FLWVIRQDFMN-GSRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQY 383 (468)
Q Consensus 306 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~ 383 (468)
|+|++...... +....+|++|++++.++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 289 flwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 368 (453)
T PLN02764 289 FLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQV 368 (453)
T ss_pred eEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchH
Confidence 99999853211 123468999999988777766 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 384 QNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD-----IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 384 ~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~-----~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
.||+++++.+|+|+.+..++.+.++.++|+++|+++|++++ +|++++++++.+++ +|||.+++++||++++
T Consensus 369 ~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~ 444 (453)
T PLN02764 369 LNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQ 444 (453)
T ss_pred HHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 99999965479999885432234899999999999998742 99999999999976 8999999999999999
Q ss_pred hhcccC
Q 012212 459 MLISGC 464 (468)
Q Consensus 459 ~~~~~~ 464 (468)
+..+++
T Consensus 445 ~~~~~~ 450 (453)
T PLN02764 445 DLVSGT 450 (453)
T ss_pred Hhcccc
Confidence 988765
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-59 Score=458.07 Aligned_cols=442 Identities=29% Similarity=0.486 Sum_probs=320.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC-----CCCCCCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP-----DGLELQA 75 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~ 75 (468)
|.++.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+........ .....++|+.+| ++++...
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~-~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRAR-ESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcc-ccCCCeEEEEcCCCCccCCCCCCc
Confidence 5567899999999999999999999999999999999999988766654321110 111248999988 4665432
Q ss_pred CCCCC--HHHHHHHH---HHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHh
Q 012212 76 ADRED--PLKLGESV---ARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSL 150 (468)
Q Consensus 76 ~~~~~--~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 150 (468)
....+ ...+...+ ...+.+.++++++.. . .+||+||+|.+..|+..+|+.+|||.+.+++++++......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 11111 11233322 233455666666542 1 46899999999999999999999999999999888776544
Q ss_pred hhhhHhhcCCCCCCCcccccCCcccccCCCcc---CcccccCcCCCCCChhHHHHHHHHHHHHHh-hccccEEEEcCccc
Q 012212 151 QFPKLLEAGIIDPNGFAILNDGLISLSDEIPA---WKRNEYTWSFPDEPSEQKILLGIICAVIQA-VKISNWIINNSVYE 226 (468)
Q Consensus 151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 226 (468)
.+.........+ .......+|+++. +...+++..+... .. ...+...+.. ...++.+++||+.+
T Consensus 159 ~~~~~~~~~~~~-------~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~----~~~~~~~~~~~~~~a~~vlvNTf~e 226 (491)
T PLN02534 159 NIRLHNAHLSVS-------SDSEPFVVPGMPQSIEITRAQLPGAFVSL-PD----LDDVRNKMREAESTAFGVVVNSFNE 226 (491)
T ss_pred HHHHhcccccCC-------CCCceeecCCCCccccccHHHCChhhcCc-cc----HHHHHHHHHhhcccCCEEEEecHHH
Confidence 321111111011 0111223566653 4555555211111 11 1222222232 23577999999999
Q ss_pred CChhhhcc-----CCCceeeccccCCCCCCCCC---CCCCC-CCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHH
Q 012212 227 LDSPACDL-----IPNILPIGPLLASNHSGDLD---GNFWS-EDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELAL 297 (468)
Q Consensus 227 le~~~~~~-----~p~v~~vGpl~~~~~~~~~~---~~~~~-~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~ 297 (468)
||....+. .++++.|||++.......+. +..+. .+.++.+||+.+++++||||+|||.....++++.+++.
T Consensus 227 LE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~ 306 (491)
T PLN02534 227 LEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGL 306 (491)
T ss_pred hhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 99865432 35799999997532111000 11111 23569999999998899999999998899999999999
Q ss_pred HHHhCCCCEEEEEcCCCC-CCc-ccCCchhHHHHh-CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCcee
Q 012212 298 GLESLQKPFLWVIRQDFM-NGS-RAKFPDGFIERV-SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFL 374 (468)
Q Consensus 298 a~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v 374 (468)
+|+.++.+|+|++..... .+. ...+|++|.+++ ..++++.+|+||.+||+|+++++||||||+||++||+++|||||
T Consensus 307 gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v 386 (491)
T PLN02534 307 GLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMI 386 (491)
T ss_pred HHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEE
Confidence 999999999999984311 111 113678898886 45666679999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeEeecc-------CC--C-ccCHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFFAD-------EN--G-IITRQEIQRKVLTLLK-----NDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~~~-------~~--~-~~t~~~l~~ai~~~l~-----~~~~r~~a~~l~~~~~~~ 439 (468)
++|++.||+.||+++++.||+|+.+... ++ + ..+.++|+++|+++|. ..++|+||++|+++.+++
T Consensus 387 ~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~A 466 (491)
T PLN02534 387 TWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKA 466 (491)
T ss_pred eccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998768999988521 11 2 4899999999999996 246999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHhh
Q 012212 440 LLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~ 460 (468)
+.+||||.+++++||+++...
T Consensus 467 v~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 467 MELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred hcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999753
No 20
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.5e-59 Score=453.12 Aligned_cols=434 Identities=25% Similarity=0.422 Sum_probs=325.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHH-HhhhhhccCCCCCeEEEEcCCCCCCCc-CCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKII-ASLQEKAEDSSSQIKLVTIPDGLELQA-ADRE 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 79 (468)
.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. +...... .....+++..+|......- ....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccccCCCCCc
Confidence 45799999999999999999999999987 99999999887654431 1111100 0112599999985432210 0011
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCc-eEEEcccchHHHHHHhhhhhHhhc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIA-RAAVVPFGPGSLALSLQFPKLLEA 158 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~ 158 (468)
+....+..+...+.+.++++++.+. .+|++||+|.+..|+..+|+.+||| .++++++++.......++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~- 154 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT- 154 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc-
Confidence 3332333344567777888887653 3589999999999999999999999 58888888777666666554321
Q ss_pred CCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC---
Q 012212 159 GIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI--- 235 (468)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~--- 235 (468)
.... ... .. .....+|+++.+...+++. .+..+.. ..+..+.+..+....++.+++||+.+||....+..
T Consensus 155 -~~~~-~~~-~~-~~~~~vPg~p~l~~~dlp~-~~~~~~~--~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 155 -VVEG-EYV-DI-KEPLKIPGCKPVGPKELME-TMLDRSD--QQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred -cccc-ccC-CC-CCeeeCCCCCCCChHHCCH-hhcCCCc--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 1110 000 00 1123478888888887773 2222211 11233334445577899999999999998654322
Q ss_pred --------CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 012212 236 --------PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFL 307 (468)
Q Consensus 236 --------p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l 307 (468)
+.++.|||++.... . ...+.++.+||+.+++++||||+|||...++.+++++++.+|+.++++|+
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~-~------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNV-H------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred cccccccCCceEEecCCCCCcc-c------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 56999999985321 1 11234799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCC--------CC-cccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccc
Q 012212 308 WVIRQDFM--------NG-SRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 308 ~~~~~~~~--------~~-~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P 377 (468)
|++..... .+ ....+|+++.+++.++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 99974211 11 12258899999998887665 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHhhceeEeec-cCCCccCHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 012212 378 YFSDQYQNRNYICEAWKIGLQFFA-DENGIITRQEIQRKVLTLLK-----NDDIRSNSLKLKEVARKSLLGGGSSFRNFE 451 (468)
Q Consensus 378 ~~~DQ~~na~rv~~~lG~g~~l~~-~~~~~~t~~~l~~ai~~~l~-----~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 451 (468)
+++||+.||+++++.||+|+.+.. ...+.++.++|+++|+++|. ..++|+||++|+++.++++.+||||.++++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999998554899999962 12345999999999999994 245999999999999999999999999999
Q ss_pred HHHHHH
Q 012212 452 SFISDI 457 (468)
Q Consensus 452 ~~~~~~ 457 (468)
+|+..+
T Consensus 461 ~~~~~~ 466 (470)
T PLN03015 461 EWAKRC 466 (470)
T ss_pred HHHHhc
Confidence 999875
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-59 Score=455.73 Aligned_cols=418 Identities=24% Similarity=0.412 Sum_probs=307.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC----CCCCCCcC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP----DGLELQAA 76 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~ 76 (468)
|..+.||+++|+|+.||++|++.||+.|+++|++|||++++.+...+...+. ....++|..++ ++++....
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~dGLP~g~e 75 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPVDGLPFGAE 75 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCcCCCCCccc
Confidence 7778999999999999999999999999999999999999988766654321 11247775543 45544321
Q ss_pred CCCCHH-HHHHHHHH---HhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhh
Q 012212 77 DREDPL-KLGESVAR---AMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQF 152 (468)
Q Consensus 77 ~~~~~~-~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (468)
...++. .....+.. .+.+.++++++. .+||+||+|. ..|+..+|+.+|||++.++++++.......+
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~-------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~- 146 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRA-------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA- 146 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhc-------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-
Confidence 111111 11112222 333334443332 4689999995 7899999999999999999999987776654
Q ss_pred hhHhhcCCCCCCCcccccCCcccccCCCcc----CcccccCc-CCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccC
Q 012212 153 PKLLEAGIIDPNGFAILNDGLISLSDEIPA----WKRNEYTW-SFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYEL 227 (468)
Q Consensus 153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 227 (468)
+.. ..+ . ..|+++. ++..+... .+.. . ....+.+..+...+++.+++||+.+|
T Consensus 147 ~~~-~~~------~---------~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eL 204 (446)
T PLN00414 147 PRA-ELG------F---------PPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVEL 204 (446)
T ss_pred cHh-hcC------C---------CCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHH
Confidence 110 000 0 1133331 11111110 1111 0 11233344456678999999999999
Q ss_pred ChhhhccC-----CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC
Q 012212 228 DSPACDLI-----PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL 302 (468)
Q Consensus 228 e~~~~~~~-----p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~ 302 (468)
|....+.. ++++.|||++....... . ...+.++.+|||.+++++||||+|||....+.+++.+++.+|+..
T Consensus 205 E~~~~~~~~~~~~~~v~~VGPl~~~~~~~~--~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s 280 (446)
T PLN00414 205 EGNLCDFIERQCQRKVLLTGPMLPEPQNKS--G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELT 280 (446)
T ss_pred HHHHHHHHHHhcCCCeEEEcccCCCccccc--C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 98765433 46999999975432110 1 112356899999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCC-CcccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccccc
Q 012212 303 QKPFLWVIRQDFMN-GSRAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 303 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~ 380 (468)
+.+|+|++...... +....+|++|++++.++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.
T Consensus 281 ~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 360 (446)
T PLN00414 281 GLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLA 360 (446)
T ss_pred CCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCccc
Confidence 99999999753211 122368999999999888887 9999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 381 DQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD-----IRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 381 DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~-----~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
||+.||+++++.+|+|+.+..++++.++.++|+++++++|.|++ +|++++++++.+.+ +||++ ..+++||+
T Consensus 361 dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~ 436 (446)
T PLN00414 361 DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVE 436 (446)
T ss_pred chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHH
Confidence 99999999964379999997543345899999999999997643 99999999999855 36634 44899999
Q ss_pred HHHhhcc
Q 012212 456 DIKMLIS 462 (468)
Q Consensus 456 ~~~~~~~ 462 (468)
++++...
T Consensus 437 ~~~~~~~ 443 (446)
T PLN00414 437 ALENEVN 443 (446)
T ss_pred HHHHhcc
Confidence 9976543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-52 Score=413.28 Aligned_cols=394 Identities=18% Similarity=0.204 Sum_probs=270.1
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC--CCC-
Q 012212 4 QPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA--DRE- 79 (468)
Q Consensus 4 ~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~- 79 (468)
..||+++ |.++.||+..+.+|+++|++|||+||++++...... .. ....+++.+.++...+.... ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-AS-------HLCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-cc-------CCCCCEEEEEcCCChHHHHHHHhhhh
Confidence 4689855 888999999999999999999999999987542111 00 01145665555311111000 000
Q ss_pred ---------CHHHH----HHHHHHHhhHHH--HHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHh-CCceEEEcccch
Q 012212 80 ---------DPLKL----GESVARAMRGCL--RDLIEKINQSNDCEPIRCVIADVTVGSALEVAESM-GIARAAVVPFGP 143 (468)
Q Consensus 80 ---------~~~~~----~~~~~~~~~~~~--~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l-giP~v~~~~~~~ 143 (468)
+.... ...+...+...+ .++.+.|++ ++.+||+||+|.+..|+..+|+.+ ++|.|.++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00011 111112222222 122333331 126799999999888999999999 999988887655
Q ss_pred HHHHHH-----hhhhhHhh---cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHH-H----HHH
Q 012212 144 GSLALS-----LQFPKLLE---AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGII-C----AVI 210 (468)
Q Consensus 144 ~~~~~~-----~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~ 210 (468)
...... +..|++.+ .+..+.|++. ++..++.... +....+.... +. .....+.. . ...
T Consensus 170 ~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~-~R~~N~~~~~------~~~~~~~~~~-~~-~~~l~~~~f~~~~~~~~ 240 (507)
T PHA03392 170 LAENFETMGAVSRHPVYYPNLWRSKFGNLNVW-ETINEIYTEL------RLYNEFSLLA-DE-QNKLLKQQFGPDTPTIR 240 (507)
T ss_pred chhHHHhhccCCCCCeeeCCcccCCCCCCCHH-HHHHHHHHHH------HHHHHHHHhh-HH-HHHHHHHHcCCCCCCHH
Confidence 322111 11112211 1222223332 2221111000 0000000001 11 11111111 1 122
Q ss_pred HhhccccEEEEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccc---cC
Q 012212 211 QAVKISNWIINNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVA---VL 287 (468)
Q Consensus 211 ~~~~~~~~~l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~---~~ 287 (468)
+-....+++|+|+++.++++ +|++|++.+|||++.+.... .+.++++.+|++..+ +++|||||||.. ..
T Consensus 241 ~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~ 312 (507)
T PHA03392 241 ELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDM 312 (507)
T ss_pred HHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCC
Confidence 33447799999999999998 89999999999998753211 247889999998764 469999999974 35
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhh
Q 012212 288 SQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGL 367 (468)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal 367 (468)
+.++++.+++++++++.+++|++++. ..+. ..++||++.+|+||.+||+||+|++||||||+||++||+
T Consensus 313 ~~~~~~~~l~a~~~l~~~viw~~~~~-------~~~~----~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal 381 (507)
T PHA03392 313 DNEFLQMLLRTFKKLPYNVLWKYDGE-------VEAI----NLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAI 381 (507)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCC-------cCcc----cCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHH
Confidence 78999999999999999999999854 1111 237899999999999999999999999999999999999
Q ss_pred hcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 368 SMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 368 ~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
++|||+|++|+++||+.||+|++++ |+|+.++..+ +|.++|.++|+++|+|++||+||+++++.+++.
T Consensus 382 ~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~---~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 382 DALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTVT---VSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ 449 (507)
T ss_pred HcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccCC---cCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999995 9999999887 999999999999999999999999999999983
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-52 Score=422.99 Aligned_cols=392 Identities=25% Similarity=0.347 Sum_probs=230.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC--CCCCH-
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA--DREDP- 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~- 81 (468)
.|||++|. ++||+.++..|+++|++|||+||++++.... .+.. ....++++..++........ ...+.
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP-------SKPSNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc-------ccccceeeEEEcCCcchHHHhhhhHHHH
Confidence 37888885 7899999999999999999999999885422 2221 11255677776654443321 11111
Q ss_pred HHHHH---------HHH-------HHhhHHH------HHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 82 LKLGE---------SVA-------RAMRGCL------RDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 82 ~~~~~---------~~~-------~~~~~~~------~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
...+. ... ......+ .++++.+++ .++|++|+|.+..|+..+|+.+++|.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~ 147 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALAHYLGIPVIIIS 147 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHHHHHHHTHHHHH
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHHHHhcCCeEEEe
Confidence 01111 000 0011111 112233333 459999999999999999999999998755
Q ss_pred ccchHHHHHH-----hhhhhHhhc---CCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHH
Q 012212 140 PFGPGSLALS-----LQFPKLLEA---GIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQ 211 (468)
Q Consensus 140 ~~~~~~~~~~-----~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (468)
+..+...... +..|++.+. ...+.|.+. ++..+....-....+ ....... .+.. .....+......+
T Consensus 148 s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~-~Ri~N~l~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~ 222 (500)
T PF00201_consen 148 SSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFW-QRIKNFLFYLYFRFI-FRYFFSP--QDKL-YKKYFGFPFSFRE 222 (500)
T ss_dssp HCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSS-T--TTSHHHHHHHHH-HHHGGGS---TTS--EEESS-GGGCHH
T ss_pred cccccchhhhhccCCCCChHHhccccccCCCccchh-hhhhhhhhhhhhccc-cccchhh--HHHH-HhhhcccccccHH
Confidence 4322110000 000111110 111111111 111110000000000 0000000 0000 0000000001122
Q ss_pred hhccccEEEEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccc-cCCHH
Q 012212 212 AVKISNWIINNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVA-VLSQQ 290 (468)
Q Consensus 212 ~~~~~~~~l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~ 290 (468)
.+...+++++|+++.+++| +|.+|++.++|+++.+.+.+ .+.++.+|+++...+++|||||||.. .++.+
T Consensus 223 ~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~~--------l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~ 293 (500)
T PF00201_consen 223 LLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAKP--------LPEELWNFLDSSGKKGVVYVSFGSIVSSMPEE 293 (500)
T ss_dssp HHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S----T--------CHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHH
T ss_pred HHHHHHHHhhhccccCcCC-cchhhcccccCccccccccc--------cccccchhhhccCCCCEEEEecCcccchhHHH
Confidence 3346678999999999999 89999999999998876554 67889999998556679999999985 45566
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcC
Q 012212 291 QFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMG 370 (468)
Q Consensus 291 ~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~G 370 (468)
.++.+++++++++.+++|++.+. .+.. .++|+++++|+||.+||+||++++||||||+||++||+++|
T Consensus 294 ~~~~~~~~~~~~~~~~iW~~~~~--------~~~~----l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~g 361 (500)
T PF00201_consen 294 KLKEIAEAFENLPQRFIWKYEGE--------PPEN----LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHG 361 (500)
T ss_dssp HHHHHHHHHHCSTTEEEEEETCS--------HGCH----HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT
T ss_pred HHHHHHHHHhhCCCccccccccc--------cccc----ccceEEEeccccchhhhhcccceeeeeccccchhhhhhhcc
Confidence 68899999999999999999854 1122 36899999999999999999999999999999999999999
Q ss_pred CceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 371 VPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 371 vP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
||+|++|+++||+.||++++++ |+|+.++..+ +|.++|.++|+++|+|++|++||+++++.+++.
T Consensus 362 vP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~---~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 362 VPMLGIPLFGDQPRNAARVEEK-GVGVVLDKND---LTEEELRAAIREVLENPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp --EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC----SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--
T ss_pred CCccCCCCcccCCccceEEEEE-eeEEEEEecC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999996 9999999988 999999999999999999999999999999984
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2e-45 Score=358.82 Aligned_cols=371 Identities=18% Similarity=0.281 Sum_probs=261.4
Q ss_pred cCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC----CCCHHHHHH
Q 012212 11 PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD----REDPLKLGE 86 (468)
Q Consensus 11 ~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~ 86 (468)
.+|+.||++|+++||++|++|||+|+|++++.+.+.+.+ .++.|..++......... ..+....++
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~----------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA----------AGAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH----------cCCEEEecCCcCccccccccccCcchHHHHH
Confidence 578999999999999999999999999999999999998 457787777554332111 123445555
Q ss_pred HHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCCCCc
Q 012212 87 SVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGF 166 (468)
Q Consensus 87 ~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 166 (468)
.+.......++.+.+.+.. .+||+||+|.+++++..+|+.+|||+|.+.+.+..... +|.... +
T Consensus 72 ~~~~~~~~~~~~l~~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~~~~~----~---- 135 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FEEMVS----P---- 135 (392)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----cccccc----c----
Confidence 5555555555555544443 57999999998889999999999999988654321100 000000 0
Q ss_pred ccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHH----------h--hccccEEEEcCcccCChhhhcc
Q 012212 167 AILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQ----------A--VKISNWIINNSVYELDSPACDL 234 (468)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~l~~~~~~le~~~~~~ 234 (468)
.........+.. . . . ...+...+....+ . ....+..+..+.+.|+++..++
T Consensus 136 --~~~~~~~~~~~~--------~-~---~---~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 198 (392)
T TIGR01426 136 --AGEGSAEEGAIA--------E-R---G---LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETF 198 (392)
T ss_pred --cchhhhhhhccc--------c-c---h---hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcccc
Confidence 000000000000 0 0 0 0001111111111 1 1234456778888888765577
Q ss_pred CCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012212 235 IPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDF 314 (468)
Q Consensus 235 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 314 (468)
+++++++||+....... .+|.....++++||+|+||.......+++.+++++.+.+.++++..+...
T Consensus 199 ~~~~~~~Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 199 DDSFTFVGPCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred CCCeEEECCCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 88999999977653211 12555455678999999998655667889999999999999888876541
Q ss_pred CCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhh
Q 012212 315 MNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394 (468)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG 394 (468)
+ ... ....++|+++.+|+||.++|.++++ +|||||+||+.||+++|+|+|++|...||+.||.++++ +|
T Consensus 266 ~-------~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g 334 (392)
T TIGR01426 266 D-------PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LG 334 (392)
T ss_pred C-------hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CC
Confidence 1 111 1224688999999999999977655 99999999999999999999999999999999999999 59
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
+|+.+...+ +++++|.++|+++|+|++|+++++++++++++. ++..++++.+.+
T Consensus 335 ~g~~l~~~~---~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~ 388 (392)
T TIGR01426 335 LGRHLPPEE---VTAEKLREAVLAVLSDPRYAERLRKMRAEIREA----GGARRAADEIEG 388 (392)
T ss_pred CEEEecccc---CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 999998777 999999999999999999999999999999983 444444444433
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7e-45 Score=356.83 Aligned_cols=365 Identities=19% Similarity=0.159 Sum_probs=252.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC-------
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD------- 77 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------- 77 (468)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...+.. .+++|..++.........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~----------~G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA----------AGLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH----------cCCceeeCCCCHHHHHhhhhhcccc
Confidence 699999999999999999999999999999999999999998887 557888777543221100
Q ss_pred ----CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhh
Q 012212 78 ----REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFP 153 (468)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 153 (468)
..........+.......++++++.++. .+||+||+|.+..++..+|+.+|||++.+++.+........+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-- 144 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP-- 144 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC--
Confidence 1112233344445555555666655543 679999999988899999999999999998765432110000
Q ss_pred hHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhc---------cccEEEEcCc
Q 012212 154 KLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVK---------ISNWIINNSV 224 (468)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 224 (468)
+ . .. .....+....................+.+. ..+..+....
T Consensus 145 -------------~---------~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 197 (401)
T cd03784 145 -------------P---------L---GR--ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS 197 (401)
T ss_pred -------------c---------c---ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC
Confidence 0 0 00 000000000000000001111111111121 1234455555
Q ss_pred ccCChhhhccCCCceeec-cccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHHhC
Q 012212 225 YELDSPACDLIPNILPIG-PLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLESL 302 (468)
Q Consensus 225 ~~le~~~~~~~p~v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~~~ 302 (468)
+.+..+..+++++..++| ++...... +..+.++..|++. ++++|||++||... ....+...+++++...
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 198 PAVLPPPPDWPRFDLVTGYGFRDVPYN-------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred cccCCCCCCccccCcEeCCCCCCCCCC-------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 555555467777877876 33322221 1245667778765 45699999999865 3456788899999988
Q ss_pred CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccch
Q 012212 303 QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQ 382 (468)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ 382 (468)
+.+++|+++... ... ...++|+++.+|+||.++|.|+++ ||||||+||++||+++|||+|++|+..||
T Consensus 269 ~~~~i~~~g~~~-------~~~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 269 GQRAILSLGWGG-------LGA---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred CCeEEEEccCcc-------ccc---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 999999887651 111 123689999999999999977555 99999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 383 YQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 383 ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
+.||+++++ +|+|+.++..+ ++.++|.++|+++|++ +++++++++++.+++
T Consensus 337 ~~~a~~~~~-~G~g~~l~~~~---~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 337 PFWAARVAE-LGAGPALDPRE---LTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHHHHH-CCCCCCCCccc---CCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 999999999 59999998877 8999999999999985 466777777777765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-44 Score=345.15 Aligned_cols=394 Identities=20% Similarity=0.227 Sum_probs=249.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
+|||+|+..|.+||++|+++||++|.++||+|+|+|++.+.+.+++.| +.|..++..-.... ...+...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag----------~~f~~~~~~~~~~~-~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG----------LAFVAYPIRDSELA-TEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC----------cceeeccccCChhh-hhhhhhh
Confidence 589999999999999999999999999999999999999999999954 56666654311111 1111112
Q ss_pred HHHHH---HHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHh-hhhhHhhcC
Q 012212 84 LGESV---ARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSL-QFPKLLEAG 159 (468)
Q Consensus 84 ~~~~~---~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~p~~~~~~ 159 (468)
..+.+ .........++++-+.+ ..||+++.|.-...+ .++...++|++.............. +.|.....+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 70 GVKSFRRLLQQFKKLIRELLELLRE----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred ccchhHHHhhhhhhhhHHHHHHHHh----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 12222 22222333444444544 459999999766655 8999999999887665443221111 111111000
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHH-HHHhhc-cccEEEEcCcccCChhhhccCCC
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICA-VIQAVK-ISNWIINNSVYELDSPACDLIPN 237 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~le~~~~~~~p~ 237 (468)
... .+ . ....+...........| ...........+....+ ..+... .+...+...+..+... ..++..
T Consensus 145 ~~~---~~---~--~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~ 214 (406)
T COG1819 145 KLP---IP---L--YPLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG-DRLPFI 214 (406)
T ss_pred ccc---cc---c--cccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC-CCCCCC
Confidence 000 00 0 00000000000000000 00000000000000000 011111 1111111111111110 223345
Q ss_pred ceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Q 012212 238 ILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNG 317 (468)
Q Consensus 238 v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~ 317 (468)
..++||+....... ...| ...++++||+|+||.... .++++.+++++.+++.++++.+.+. ..
T Consensus 215 ~~~~~~~~~~~~~~------------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~- 277 (406)
T COG1819 215 GPYIGPLLGEAANE------------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD- 277 (406)
T ss_pred cCcccccccccccc------------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc-
Confidence 55666666554322 2233 334567999999999765 8999999999999999999988652 11
Q ss_pred cccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhcee
Q 012212 318 SRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGL 397 (468)
Q Consensus 318 ~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~ 397 (468)
-....++|+++.+|+||.++|.++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|+
T Consensus 278 --------~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~ 346 (406)
T COG1819 278 --------TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGI 346 (406)
T ss_pred --------ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCce
Confidence 11234788899999999999966655 99999999999999999999999999999999999999 59999
Q ss_pred EeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 398 QFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 398 ~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
.++.++ +|.+.++++|+++|+|+.|+++++++++.++.. +| .+.+.+++++...
T Consensus 347 ~l~~~~---l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~ 400 (406)
T COG1819 347 ALPFEE---LTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFAR 400 (406)
T ss_pred ecCccc---CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHh
Confidence 999988 999999999999999999999999999999995 33 5656666666443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.7e-41 Score=342.07 Aligned_cols=413 Identities=29% Similarity=0.454 Sum_probs=259.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhc---cCCCCCeEEEEcCCCCCCCcCCC-C
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKA---EDSSSQIKLVTIPDGLELQAADR-E 79 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-~ 79 (468)
..+++++++|+.||++|+..||+.|+++||+||++++.......... .... ........+...+++.+...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 35778888889999999999999999999999999998766554321 0000 00001111111111111111000 0
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhC-CceEEEcccchHHHHHHhhhhhHhhc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMG-IARAAVVPFGPGSLALSLQFPKLLEA 158 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (468)
........+...+...+++.+..+.... ..++|++|+|.+..+...++.... +|...+.+..........+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~--- 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLK-SEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS--- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhh-cCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc---
Confidence 1111123344444555555443333221 133999999998666776776664 88877777666554433322211
Q ss_pred CCCCCCCcccccCCcccccCCCccCcccccCc---CCCCCChhHHHHHHHHH-------HHHHhhccccEEEEcCcccCC
Q 012212 159 GIIDPNGFAILNDGLISLSDEIPAWKRNEYTW---SFPDEPSEQKILLGIIC-------AVIQAVKISNWIINNSVYELD 228 (468)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~le 228 (468)
..+....+ ..........+...+....+.. ...............+. ....-+...+..+.|+++.++
T Consensus 160 -~~p~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~ 237 (496)
T KOG1192|consen 160 -YVPSPFSL-SSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLD 237 (496)
T ss_pred -ccCcccCc-cccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccC
Confidence 11100000 0000000000000000000000 00000000000000000 011223466788999999888
Q ss_pred hhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCc--cEEEEEecccc---cCCHHHHHHHHHHHHhC-
Q 012212 229 SPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIR--SVVYVAFGSVA---VLSQQQFAELALGLESL- 302 (468)
Q Consensus 229 ~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~Gs~~---~~~~~~~~~~~~a~~~~- 302 (468)
++..+..+++++|||++...... + .....+|++..+.. ++|||||||.. .++.++...++.+++.+
T Consensus 238 ~~~~~~~~~v~~IG~l~~~~~~~------~--~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~ 309 (496)
T KOG1192|consen 238 FEPRPLLPKVIPIGPLHVKDSKQ------K--SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQ 309 (496)
T ss_pred CCCCCCCCCceEECcEEecCccc------c--ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCC
Confidence 85477789999999999983322 1 11345666665554 79999999997 79999999999999999
Q ss_pred CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHH-hcCCCCCceeeccCchhHHHhhhcCCceeccccccc
Q 012212 303 QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKV-LGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSD 381 (468)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-l~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~D 381 (468)
+..|+|++... ....+++++.++.++||...+|+||.++ |.|+++++||||||+||++|++++|||+|++|+++|
T Consensus 310 ~~~FiW~~~~~----~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~D 385 (496)
T KOG1192|consen 310 GVTFLWKYRPD----DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGD 385 (496)
T ss_pred CceEEEEecCC----cchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcccc
Confidence 77889999865 1111233332112457888899999998 599999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 382 QYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 382 Q~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
|+.||++++++ |.|..+...+ .+...+.+++.+++++++|+++++++++.+++.
T Consensus 386 Q~~Na~~i~~~-g~~~v~~~~~---~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~ 439 (496)
T KOG1192|consen 386 QPLNARLLVRH-GGGGVLDKRD---LVSEELLEAIKEILENEEYKEAAKRLSEILRDQ 439 (496)
T ss_pred chhHHHHHHhC-CCEEEEehhh---cCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcC
Confidence 99999999997 7777776665 666669999999999999999999999999873
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=3.9e-26 Score=216.94 Aligned_cols=306 Identities=17% Similarity=0.159 Sum_probs=193.5
Q ss_pred CEEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 5 PHVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
|||+|...+ |.||+.+++.||++| |||+|+|++.....+.+.. .+....+++.........-+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGLGPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCceEeccCCccchHH
Confidence 789977666 779999999999999 6999999999876655533 13444444321111111112212
Q ss_pred HHHHHH---HHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 84 LGESVA---RAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 84 ~~~~~~---~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
...... .......+++++.+.. .+||+||+|. .+.+..+|+..|||++.+.........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~------------- 129 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLRE----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHP------------- 129 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccc-------------
Confidence 222111 2233445555555555 5699999995 445778999999999998764431100
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh--hccccEEEEcCcccCChhhhccCCCc
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA--VKISNWIINNSVYELDSPACDLIPNI 238 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~le~~~~~~~p~v 238 (468)
. ....... .....+.+.... ...++..+..+++ . + .+...++
T Consensus 130 ------------------~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~-~~~~~~~ 173 (318)
T PF13528_consen 130 ------------------N-----------FWLPWDQ---DFGRLIERYIDRYHFPPADRRLALSFY-P--P-LPPFFRV 173 (318)
T ss_pred ------------------c-----------CCcchhh---hHHHHHHHhhhhccCCcccceecCCcc-c--c-ccccccc
Confidence 0 0000000 011111111211 2234444433332 1 1 2223356
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCC
Q 012212 239 LPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ-KPFLWVIRQDFMNG 317 (468)
Q Consensus 239 ~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~l~~~~~~~~~~ 317 (468)
.++||+..+.... . . ..+++.|+|++|+.... .+++++...+ +.+++. +..
T Consensus 174 ~~~~p~~~~~~~~--------~--------~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~---- 225 (318)
T PF13528_consen 174 PFVGPIIRPEIRE--------L--------P-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN---- 225 (318)
T ss_pred cccCchhcccccc--------c--------C-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC----
Confidence 6788877654332 1 1 12345799999986432 5667777766 455544 433
Q ss_pred cccCCchhHHHHhCCCceEEccc--ChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc--ccchhhhHHHHHHHh
Q 012212 318 SRAKFPDGFIERVSNRGKIVEWA--PQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY--FSDQYQNRNYICEAW 393 (468)
Q Consensus 318 ~~~~~~~~~~~~~~~nv~~~~~~--p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~rv~~~l 393 (468)
. .+..++|+.+.+|. ...++|..+ +++|+|||+||++|++++|+|+|++|. ..||..||+++++ +
T Consensus 226 ----~----~~~~~~ni~~~~~~~~~~~~~m~~a--d~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~ 294 (318)
T PF13528_consen 226 ----A----ADPRPGNIHVRPFSTPDFAELMAAA--DLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-L 294 (318)
T ss_pred ----c----ccccCCCEEEeecChHHHHHHHHhC--CEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-C
Confidence 1 01126888999876 457789555 559999999999999999999999999 7899999999999 5
Q ss_pred hceeEeeccCCCccCHHHHHHHHHHH
Q 012212 394 KIGLQFFADENGIITRQEIQRKVLTL 419 (468)
Q Consensus 394 G~g~~l~~~~~~~~t~~~l~~ai~~~ 419 (468)
|+|+.++.++ ++++.|+++|+++
T Consensus 295 G~~~~~~~~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 295 GLGIVLSQED---LTPERLAEFLERL 317 (318)
T ss_pred CCeEEccccc---CCHHHHHHHHhcC
Confidence 9999998877 9999999999764
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1e-25 Score=214.65 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=198.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
|.||++.+.++.||++|.++||++|.++||+|+|++.....+.- . ....++.+..++..--. ......
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~---l-----~~~~g~~~~~~~~~~l~----~~~~~~ 68 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT---I-----IEKENIPYYSISSGKLR----RYFDLK 68 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccc---c-----CcccCCcEEEEeccCcC----CCchHH
Confidence 45789999999999999999999999999999999976543321 1 11145777777632111 111122
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGII 161 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (468)
.+..........+ ..++-+++ .+||+|+...-.. .+..+|..+++|++.......
T Consensus 69 ~~~~~~~~~~~~~-~~~~i~~~----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~------------------ 125 (352)
T PRK12446 69 NIKDPFLVMKGVM-DAYVRIRK----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT------------------ 125 (352)
T ss_pred HHHHHHHHHHHHH-HHHHHHHh----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC------------------
Confidence 2333333333222 22222333 6799999987554 467899999999987543111
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC-CCcee
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI-PNILP 240 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-p~v~~ 240 (468)
+++. .... .+.++.++.. +++ ....+. .++.+
T Consensus 126 ----------------~g~~------------------nr~~---------~~~a~~v~~~-f~~---~~~~~~~~k~~~ 158 (352)
T PRK12446 126 ----------------PGLA------------------NKIA---------LRFASKIFVT-FEE---AAKHLPKEKVIY 158 (352)
T ss_pred ----------------ccHH------------------HHHH---------HHhhCEEEEE-ccc---hhhhCCCCCeEE
Confidence 0000 0011 1122333322 221 101122 36788
Q ss_pred eccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCcc
Q 012212 241 IGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQ-QQFAELALGLESLQKPFLWVIRQDFMNGSR 319 (468)
Q Consensus 241 vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~ 319 (468)
+|+-+.+.... ...+...+.+...+++++|+|.-||...... +.+..++..+.. +.+++++++..
T Consensus 159 tG~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~------ 224 (352)
T PRK12446 159 TGSPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG------ 224 (352)
T ss_pred ECCcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc------
Confidence 89755543221 0111111223333456799999999854222 233334444322 46777777744
Q ss_pred cCCchhHHHHhCCCceEEccc-C-hHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc-----cchhhhHHHHHHH
Q 012212 320 AKFPDGFIERVSNRGKIVEWA-P-QEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF-----SDQYQNRNYICEA 392 (468)
Q Consensus 320 ~~~~~~~~~~~~~nv~~~~~~-p-~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~rv~~~ 392 (468)
.+.... +. .++.++.+|+ + ..+++.++++ +|||||.+|+.|++++|+|+|++|+. .||..||..+++.
T Consensus 225 -~~~~~~-~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~ 299 (352)
T PRK12446 225 -NLDDSL-QN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ 299 (352)
T ss_pred -hHHHHH-hh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC
Confidence 111111 11 1355666887 4 5678977765 99999999999999999999999974 4899999999995
Q ss_pred hhceeEeeccCCCccCHHHHHHHHHHHhcChH-HHHHHHH
Q 012212 393 WKIGLQFFADENGIITRQEIQRKVLTLLKNDD-IRSNSLK 431 (468)
Q Consensus 393 lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~-~r~~a~~ 431 (468)
|+|..+..++ ++++.|.+++.++++|++ |++++++
T Consensus 300 -g~~~~l~~~~---~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 300 -GYASVLYEED---VTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred -CCEEEcchhc---CCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999998777 999999999999998875 5544433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=2.1e-23 Score=197.56 Aligned_cols=309 Identities=14% Similarity=0.115 Sum_probs=174.2
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeE-EEEcCCCCCCCcCCCCCHHH
Q 012212 6 HVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIK-LVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 6 ~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 83 (468)
||+|...+ |.||+.|.++||++|.+ ||+|+|+++......+...+ +. +...|..........-+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~----------~~~~~~~p~~~~~~~~~~~~~~~ 69 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG----------FKVFETFPGIKLKGEDGKVNIVK 69 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc----------CcceeccCCceEeecCCcCcHHH
Confidence 57776555 55999999999999999 99999999888555555432 22 22222110000000011111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDP 163 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 163 (468)
.+..........+.+.++.+++ .+||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 70 ~l~~~~~~~~~~~~~~~~~l~~----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------------ 126 (321)
T TIGR00661 70 TLRNKEYSPKKAIRREINIIRE----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------------ 126 (321)
T ss_pred HHHhhccccHHHHHHHHHHHHh----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------------------
Confidence 1110001101234444444444 679999999 55567889999999999876521100
Q ss_pred CCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhh-ccccEEEEcCcccCChhhhccCCCce--e
Q 012212 164 NGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAV-KISNWIINNSVYELDSPACDLIPNIL--P 240 (468)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~le~~~~~~~p~v~--~ 240 (468)
+ ++. . .. ...... .....+ ...+......++... +..|.+. .
T Consensus 127 --~-----------~~~------------~-~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~ 171 (321)
T TIGR00661 127 --Y-----------PLK------------T-DL--IVYPTM---AALRIFNERCERFIVPDYPFPY----TICPKIIKNM 171 (321)
T ss_pred --C-----------Ccc------------c-ch--hHHHHH---HHHHHhccccceEeeecCCCCC----CCCccccccC
Confidence 0 000 0 00 000000 111111 122333223222111 1111110 0
Q ss_pred eccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccc
Q 012212 241 IGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRA 320 (468)
Q Consensus 241 vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 320 (468)
-+|.. ..+..++.. .+++.|++.+|+... ..+++++.+.+. +.+++... .
T Consensus 172 ~~~~~---------------~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~------~ 221 (321)
T TIGR00661 172 EGPLI---------------RYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSY------E 221 (321)
T ss_pred CCccc---------------chhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCC------C
Confidence 01111 011112221 134568888777432 345677776654 33333322 0
Q ss_pred CCchhHHHHhCCCceEEcccC--hHHHhcCCCCCceeeccCchhHHHhhhcCCceecccccc--chhhhHHHHHHHhhce
Q 012212 321 KFPDGFIERVSNRGKIVEWAP--QEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFS--DQYQNRNYICEAWKIG 396 (468)
Q Consensus 321 ~~~~~~~~~~~~nv~~~~~~p--~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~g 396 (468)
..... .++|+.+.+|.| ..++| +.++++|||||++|++|++++|+|++++|... ||..||+.+++. |+|
T Consensus 222 ~~~~~----~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~ 294 (321)
T TIGR00661 222 VAKNS----YNENVEIRRITTDNFKELI--KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCG 294 (321)
T ss_pred CCccc----cCCCEEEEECChHHHHHHH--HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCE
Confidence 11112 257889999998 35566 55566999999999999999999999999854 999999999995 999
Q ss_pred eEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 397 LQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 397 ~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
+.++..+ + ++.+++.++++|++|.
T Consensus 295 ~~l~~~~---~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 295 IALEYKE---L---RLLEAILDIRNMKRYK 318 (321)
T ss_pred EEcChhh---H---HHHHHHHhcccccccc
Confidence 9998765 4 7777888888888875
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4e-21 Score=180.64 Aligned_cols=323 Identities=18% Similarity=0.175 Sum_probs=195.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+.... ...++.++.++.+.............
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEecccccccCcHHHHHH
Confidence 47888888999999999999999999999 5888866554443332 11467777777543333211112222
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGII 161 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (468)
.+..+.. ....+.++++ .+||+|+.-.-+. .+..+|..+|||.+..-.-..
T Consensus 73 ~~~~~~~--~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~------------------ 125 (357)
T COG0707 73 PFKLLKG--VLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV------------------ 125 (357)
T ss_pred HHHHHHH--HHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC------------------
Confidence 2222221 1124555555 6799999955444 667889999999987542111
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceee
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPI 241 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~v 241 (468)
++.. | .+. ...++.+. .+++..+. ..-..+++.+
T Consensus 126 ----------------~G~a--------n----------k~~---------~~~a~~V~-~~f~~~~~--~~~~~~~~~t 159 (357)
T COG0707 126 ----------------PGLA--------N----------KIL---------SKFAKKVA-SAFPKLEA--GVKPENVVVT 159 (357)
T ss_pred ----------------cchh--------H----------HHh---------HHhhceee-eccccccc--cCCCCceEEe
Confidence 1110 0 000 00112222 22221110 1111257777
Q ss_pred cc-ccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHH-HHHHHHhCC--CCEEEEEcCCCCCC
Q 012212 242 GP-LLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAE-LALGLESLQ--KPFLWVIRQDFMNG 317 (468)
Q Consensus 242 Gp-l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~-~~~a~~~~~--~~~l~~~~~~~~~~ 317 (468)
|- +..+-.. .+.....+ ....++++|+|+-||... ..+.. +.+++..+. ..++..++..
T Consensus 160 G~Pvr~~~~~---------~~~~~~~~-~~~~~~~~ilV~GGS~Ga---~~ln~~v~~~~~~l~~~~~v~~~~G~~---- 222 (357)
T COG0707 160 GIPVRPEFEE---------LPAAEVRK-DGRLDKKTILVTGGSQGA---KALNDLVPEALAKLANRIQVIHQTGKN---- 222 (357)
T ss_pred cCcccHHhhc---------cchhhhhh-hccCCCcEEEEECCcchh---HHHHHHHHHHHHHhhhCeEEEEEcCcc----
Confidence 73 3222111 00111111 111256799999888743 22333 333443443 4555555543
Q ss_pred cccCCchhHHHHh-CCC-ceEEcccCh-HHHhcCCCCCceeeccCchhHHHhhhcCCceecccc-cc---chhhhHHHHH
Q 012212 318 SRAKFPDGFIERV-SNR-GKIVEWAPQ-EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY-FS---DQYQNRNYIC 390 (468)
Q Consensus 318 ~~~~~~~~~~~~~-~~n-v~~~~~~p~-~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~-~~---DQ~~na~rv~ 390 (468)
. .+...... ..+ +.+.+|..+ ..+++-+++ +||++|.+|+.|++++|+|+|.+|+ .+ +|..||..++
T Consensus 223 ---~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~ 296 (357)
T COG0707 223 ---D-LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLE 296 (357)
T ss_pred ---h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHH
Confidence 1 12222222 233 666788866 668855555 9999999999999999999999997 33 8999999999
Q ss_pred HHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 391 EAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 391 ~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
++ |.|+.++..+ +|.+++.+.|.+++++ .++.+++++..++
T Consensus 297 ~~-gaa~~i~~~~---lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~ 337 (357)
T COG0707 297 KA-GAALVIRQSE---LTPEKLAELILRLLSN---PEKLKAMAENAKK 337 (357)
T ss_pred hC-CCEEEecccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHh
Confidence 97 9999999988 9999999999999998 4455556666655
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=1e-20 Score=182.82 Aligned_cols=345 Identities=14% Similarity=0.094 Sum_probs=199.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
||||+++..+..||...++.||++|.++||+|++++.+..... .. ....+++++.++..-.. ......
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~----~~~~~~ 68 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL-------VPKAGIEFHFIPSGGLR----RKGSLA 68 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc-------cccCCCcEEEEeccCcC----CCChHH
Confidence 4889999888889999999999999999999999998653211 00 00035666665532111 111122
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGII 161 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (468)
........ ...+..+.+.+++ .+||+|++..... .+..+++..++|+++......
T Consensus 69 ~l~~~~~~-~~~~~~~~~~ik~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------ 125 (357)
T PRK00726 69 NLKAPFKL-LKGVLQARKILKR----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------ 125 (357)
T ss_pred HHHHHHHH-HHHHHHHHHHHHh----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC------------------
Confidence 22222111 1223333334443 5699999996332 445667888999986421000
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceee
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPI 241 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~v 241 (468)
+ . ....+ . ...+|.++..+...+. .....++.++
T Consensus 126 ----------------~------------~------~~~r~---~------~~~~d~ii~~~~~~~~---~~~~~~i~vi 159 (357)
T PRK00726 126 ----------------P------------G------LANKL---L------ARFAKKVATAFPGAFP---EFFKPKAVVT 159 (357)
T ss_pred ----------------c------------c------HHHHH---H------HHHhchheECchhhhh---ccCCCCEEEE
Confidence 0 0 00000 0 1122333333321111 1122467777
Q ss_pred ccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCcc
Q 012212 242 GPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQK--PFLWVIRQDFMNGSR 319 (468)
Q Consensus 242 Gpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~l~~~~~~~~~~~~ 319 (468)
|+........ .+. ....+...++.++|++..|+.. ...+...+.+++.++.. .+++.++.+ .
T Consensus 160 ~n~v~~~~~~--------~~~-~~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g----~- 223 (357)
T PRK00726 160 GNPVREEILA--------LAA-PPARLAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKG----D- 223 (357)
T ss_pred CCCCChHhhc--------ccc-hhhhccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCC----c-
Confidence 7544332111 000 0001111223446666555532 11222233366554433 344555544 1
Q ss_pred cCCchhHHHH--hCCCceEEccc-ChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc----ccchhhhHHHHHHH
Q 012212 320 AKFPDGFIER--VSNRGKIVEWA-PQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY----FSDQYQNRNYICEA 392 (468)
Q Consensus 320 ~~~~~~~~~~--~~~nv~~~~~~-p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~ 392 (468)
. +.+.+. ..-++.+.+|+ +..+++..+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+.
T Consensus 224 --~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~ 298 (357)
T PRK00726 224 --L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA 298 (357)
T ss_pred --H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC
Confidence 1 222222 22237778998 45788955555 9999999999999999999999996 46899999999995
Q ss_pred hhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 393 WKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 393 lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
|.|+.++.++ ++++.++++|.++++|++++++..+-+.++.+ .+++.+.++.+++.++
T Consensus 299 -~~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 299 -GAALLIPQSD---LTPEKLAEKLLELLSDPERLEAMAEAARALGK----PDAAERLADLIEELAR 356 (357)
T ss_pred -CCEEEEEccc---CCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC----cCHHHHHHHHHHHHhh
Confidence 9999998776 78999999999999999888766665544432 4555555555555443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=4.5e-19 Score=170.98 Aligned_cols=324 Identities=15% Similarity=0.107 Sum_probs=186.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLG 85 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (468)
+|++...+..||......||+.|.++||+|++++....... .. ....++++..++..... .......+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RL-------VPKAGIPLHTIPVGGLR----RKGSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hc-------ccccCCceEEEEecCcC----CCChHHHH
Confidence 57888888889999999999999999999999988643211 10 11134666666532111 11112212
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCC
Q 012212 86 ESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDP 163 (468)
Q Consensus 86 ~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 163 (468)
..+..... .+..+.+.+++ .+||+|++..... .+..+|...++|+++.....
T Consensus 69 ~~~~~~~~-~~~~~~~~i~~----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~--------------------- 122 (350)
T cd03785 69 KAPFKLLK-GVLQARKILKK----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA--------------------- 122 (350)
T ss_pred HHHHHHHH-HHHHHHHHHHh----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC---------------------
Confidence 11111111 12223333333 5799999875332 45677888899988632100
Q ss_pred CCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceeecc
Q 012212 164 NGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPIGP 243 (468)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~vGp 243 (468)
+ ++ ....+ ....++.++..+....++ -...++.++|.
T Consensus 123 --~-----------~~----------------------~~~~~-----~~~~~~~vi~~s~~~~~~---~~~~~~~~i~n 159 (350)
T cd03785 123 --V-----------PG----------------------LANRL-----LARFADRVALSFPETAKY---FPKDKAVVTGN 159 (350)
T ss_pred --C-----------cc----------------------HHHHH-----HHHhhCEEEEcchhhhhc---CCCCcEEEECC
Confidence 0 00 00000 011245666555433332 01235666775
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCC
Q 012212 244 LLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLS-QQQFAELALGLESLQKPFLWVIRQDFMNGSRAKF 322 (468)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~ 322 (468)
........ .... ...+...+++++|++..|+..... .+++..++..+.+.+..+++.++.+ .
T Consensus 160 ~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~---- 222 (350)
T cd03785 160 PVREEILA--------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----D---- 222 (350)
T ss_pred CCchHHhh--------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----c----
Confidence 44322111 0000 112222234446666555542211 1122233333432233445555433 1
Q ss_pred chhHHHHh---CCCceEEccc-ChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc----ccchhhhHHHHHHHhh
Q 012212 323 PDGFIERV---SNRGKIVEWA-PQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY----FSDQYQNRNYICEAWK 394 (468)
Q Consensus 323 ~~~~~~~~---~~nv~~~~~~-p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG 394 (468)
.+.+.+.. .+|+++.+|+ ....++..+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |
T Consensus 223 ~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g 299 (350)
T cd03785 223 LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-G 299 (350)
T ss_pred HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-C
Confidence 12222222 4689999998 55778865555 9999999999999999999999985 46899999999995 9
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
.|+.++..+ .+.+++.++|+++++|++.+++..+-+
T Consensus 300 ~g~~v~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 300 AAVLIPQEE---LTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred CEEEEecCC---CCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999998765 689999999999999887665444433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.85 E-value=2e-18 Score=154.24 Aligned_cols=329 Identities=14% Similarity=0.118 Sum_probs=208.0
Q ss_pred CCCCEEEEEcCC--CccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC-
Q 012212 2 SRQPHVLVIPYP--AQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA- 76 (468)
Q Consensus 2 ~~~~~Il~~~~~--~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 76 (468)
.+++||+|++-- |.||+..+..||++|++. |.+|+++|+.+-..... .+.+++++.+|........
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~---------~~~gVd~V~LPsl~k~~~G~ 77 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP---------GPAGVDFVKLPSLIKGDNGE 77 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC---------CcccCceEecCceEecCCCc
Confidence 456799999765 569999999999999988 99999999987655542 2378999999953322211
Q ss_pred -CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHH-----HHHHHh--CCceEEEcccchHHHHH
Q 012212 77 -DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSAL-----EVAESM--GIARAAVVPFGPGSLAL 148 (468)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~-----~~A~~l--giP~v~~~~~~~~~~~~ 148 (468)
...+...-...+.+...+.+...++. .+||++|+|.+.++.. .+++.- +-+++..
T Consensus 78 ~~~~d~~~~l~e~~~~Rs~lil~t~~~-------fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~---------- 140 (400)
T COG4671 78 YGLVDLDGDLEETKKLRSQLILSTAET-------FKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLG---------- 140 (400)
T ss_pred eeeeecCCCHHHHHHHHHHHHHHHHHh-------cCCCEEEEeccccchhhhhhHHHHHHhhcCCcceee----------
Confidence 11111111444444445545555555 6799999998766411 111111 1001000
Q ss_pred HhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCC
Q 012212 149 SLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELD 228 (468)
Q Consensus 149 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 228 (468)
.. ..++.+ ......-.......... +..|.+++..+|.|-
T Consensus 141 -----------lr----------------------~i~D~p-~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~ 180 (400)
T COG4671 141 -----------LR----------------------SIRDIP-QELEADWRRAETVRLIN------RFYDLVLVYGDPDFY 180 (400)
T ss_pred -----------hH----------------------hhhhch-hhhccchhhhHHHHHHH------HhheEEEEecCcccc
Confidence 00 001111 00000000011111111 145888999998876
Q ss_pred hhhhcc--C----CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHh-
Q 012212 229 SPACDL--I----PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLES- 301 (468)
Q Consensus 229 ~~~~~~--~----p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~- 301 (468)
-+...+ . .++.|+|-+..+ .+.. ...|+. .+++..|+||-|... ...+++...+.|-..
T Consensus 181 d~~~~~~~~~~i~~k~~ytG~vq~~--~~~~-~~p~~~----------~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l 246 (400)
T COG4671 181 DPLTEFPFAPAIRAKMRYTGFVQRS--LPHL-PLPPHE----------APEGFDILVSVGGGA-DGAELIETALAAAQLL 246 (400)
T ss_pred ChhhcCCccHhhhhheeEeEEeecc--CcCC-CCCCcC----------CCccceEEEecCCCh-hhHHHHHHHHHHhhhC
Confidence 553222 2 378999988332 1110 000111 133347999998854 367788888877654
Q ss_pred CCCC--EEEEEcCCCCCCcccCCchhHHHHh----C--CCceEEcccCh-HHHhcCCCCCceeeccCchhHHHhhhcCCc
Q 012212 302 LQKP--FLWVIRQDFMNGSRAKFPDGFIERV----S--NRGKIVEWAPQ-EKVLGHSSVACFISHCGWNSTMEGLSMGVP 372 (468)
Q Consensus 302 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~----~--~nv~~~~~~p~-~~ll~~~~~~~~I~hGG~~s~~eal~~GvP 372 (468)
.+.+ .++++++ .+|.....+. + +++.+..|.-+ ..++.-++. +|+-||+||++|-|.+|+|
T Consensus 247 ~~l~~~~~ivtGP--------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~ 316 (400)
T COG4671 247 AGLNHKWLIVTGP--------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKP 316 (400)
T ss_pred CCCCcceEEEeCC--------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCc
Confidence 3334 4444443 4666554433 4 78888999866 668865655 9999999999999999999
Q ss_pred eeccccc---cchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 373 FLCWPYF---SDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 373 ~v~~P~~---~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
.+++|.. .||-..|.|+++ ||+.-++..++ +|++.++++|...++-|+
T Consensus 317 aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~---lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 317 ALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPEN---LTPQNLADALKAALARPS 367 (400)
T ss_pred eEEeccCCCcHHHHHHHHHHHh-cCcceeeCccc---CChHHHHHHHHhcccCCC
Confidence 9999973 599999999999 89999999988 999999999999998554
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=1.2e-16 Score=153.85 Aligned_cols=320 Identities=15% Similarity=0.143 Sum_probs=173.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
|||+|+..+..||+.....||++|.++||+|++++.+..... .. ....+++++.++..... ...+...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~------~~~~g~~~~~i~~~~~~----~~~~~~~ 68 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RL------VPKAGIEFYFIPVGGLR----RKGSFRL 68 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--cc------cccCCCceEEEeccCcC----CCChHHH
Confidence 489999999999999888999999999999999987542110 00 00135666665532111 1122222
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCC
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIID 162 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 162 (468)
+....... ..+..+.+.+++ .+||+|++..... .+..++..+++|++.......
T Consensus 69 l~~~~~~~-~~~~~l~~~i~~----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 124 (348)
T TIGR01133 69 IKTPLKLL-KAVFQARRILKK----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------- 124 (348)
T ss_pred HHHHHHHH-HHHHHHHHHHHh----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC-------------------
Confidence 22222111 123333333443 6799999985433 344568888999874321000
Q ss_pred CCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceeec
Q 012212 163 PNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPIG 242 (468)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~vG 242 (468)
+ . .. . +.. ...+|.++..+...-++. ...++|
T Consensus 125 ---------------~------------~---------~~-~---~~~--~~~~d~ii~~~~~~~~~~------~~~~i~ 156 (348)
T TIGR01133 125 ---------------P------------G---------LT-N---KLL--SRFAKKVLISFPGAKDHF------EAVLVG 156 (348)
T ss_pred ---------------c------------c---------HH-H---HHH--HHHhCeeEECchhHhhcC------CceEEc
Confidence 0 0 00 0 000 113455544443211111 123444
Q ss_pred cccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHh---CCCCEEEEEcCCCCCCcc
Q 012212 243 PLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLES---LQKPFLWVIRQDFMNGSR 319 (468)
Q Consensus 243 pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~l~~~~~~~~~~~~ 319 (468)
.-....... .+.. ...+...++.++|.+.-|+.. .....+.+.+++.. .+.++++..++.
T Consensus 157 n~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~------ 219 (348)
T TIGR01133 157 NPVRQEIRS--------LPVP-RERFGLREGKPTILVLGGSQG--AKILNELVPKALAKLAEKGIQIVHQTGKN------ 219 (348)
T ss_pred CCcCHHHhc--------ccch-hhhcCCCCCCeEEEEECCchh--HHHHHHHHHHHHHHHhhcCcEEEEECCcc------
Confidence 322211000 0000 011222223345544434433 22222223344433 344555444332
Q ss_pred cCCchhHHHHhCC-C-ceEEccc--ChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc---cchhhhHHHHHHH
Q 012212 320 AKFPDGFIERVSN-R-GKIVEWA--PQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF---SDQYQNRNYICEA 392 (468)
Q Consensus 320 ~~~~~~~~~~~~~-n-v~~~~~~--p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~ 392 (468)
.. +.+.+...+ + ..++.|. ....++..+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++.
T Consensus 220 -~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~ 295 (348)
T TIGR01133 220 -DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL 295 (348)
T ss_pred -hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC
Confidence 11 222222221 1 1233343 45778866655 99999988999999999999998863 4788899999985
Q ss_pred hhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 393 WKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 393 lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
|.|..++..+ .+.++|.++++++++|++++++..+-+
T Consensus 296 -~~G~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 296 -GAGLVIRQKE---LLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred -CCEEEEeccc---CCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999987765 689999999999999988765444433
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=1e-16 Score=155.10 Aligned_cols=351 Identities=11% Similarity=0.071 Sum_probs=195.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
.||++...++.||++|. +||++|.++|++|+|++.... .+++.|.+ ..+++..++. ..+.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~------~~~~~~~l~v---------~G~~~~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE------VLYSMEELSV---------MGLREV 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc------cccChHHhhh---------ccHHHH
Confidence 68999998899999999 999999999999999997643 45553321 1233332221 122222
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC-cccHHH--HHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCC
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT-VGSALE--VAESMGIARAAVVPFGPGSLALSLQFPKLLEAGII 161 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~-~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (468)
+..+... ...+.++.+.+++ .+||+||.=.. .+.... +|+.+|||++.+.+ |- .
T Consensus 68 l~~~~~~-~~~~~~~~~~l~~----~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~-~---------------- 124 (385)
T TIGR00215 68 LGRLGRL-LKIRKEVVQLAKQ----AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQ-V---------------- 124 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHh----cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-Cc-H----------------
Confidence 2222221 1223344444444 67999887443 223233 88999999987542 10 0
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceee
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPI 241 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~v 241 (468)
|.|.... . .... ..+|.++..+..+-++. ....-+..++
T Consensus 125 ----------------------------waw~~~~--~-r~l~---------~~~d~v~~~~~~e~~~~-~~~g~~~~~v 163 (385)
T TIGR00215 125 ----------------------------WAWRKWR--A-KKIE---------KATDFLLAILPFEKAFY-QKKNVPCRFV 163 (385)
T ss_pred ----------------------------hhcCcch--H-HHHH---------HHHhHhhccCCCcHHHH-HhcCCCEEEE
Confidence 0111100 0 1111 12233333333222221 1222356678
Q ss_pred ccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCC
Q 012212 242 GPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFMN 316 (468)
Q Consensus 242 Gpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~~ 316 (468)
|.-..+.... ......+..+.+...+++++|.+.-||....-...+..+++++..+ +.++++........
T Consensus 164 GnPv~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~ 238 (385)
T TIGR00215 164 GHPLLDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRR 238 (385)
T ss_pred CCchhhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhH
Confidence 8433221110 0001111112223334556888877886432233445555554432 22344444332000
Q ss_pred CcccCCchhHHHHh--CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecc----cccc---------c
Q 012212 317 GSRAKFPDGFIERV--SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCW----PYFS---------D 381 (468)
Q Consensus 317 ~~~~~~~~~~~~~~--~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~----P~~~---------D 381 (468)
..+ +.+.+.. ..++.+..+ ....++..+++ +|+-.|..|+ |++++|+|+|++ |+.. .
T Consensus 239 ---~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~ 310 (385)
T TIGR00215 239 ---LQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTD 310 (385)
T ss_pred ---HHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCC
Confidence 001 1111122 123333322 33557855555 9999999988 999999999999 7632 3
Q ss_pred hhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 012212 382 QYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND----DIRSNSLKLKEVARKSLLGGGSSFRNFESFI 454 (468)
Q Consensus 382 Q~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (468)
|..|+..+... |+...+--++ +|++.|.+++.++|+|+ +++++.+.--.++++...++|.+.++.+.++
T Consensus 311 ~~~~~nil~~~-~~~pel~q~~---~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 311 YISLPNILANR-LLVPELLQEE---CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred eeeccHHhcCC-ccchhhcCCC---CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 78899999886 8888887666 99999999999999999 7777666666666665555666666665554
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.75 E-value=1.4e-15 Score=148.07 Aligned_cols=141 Identities=17% Similarity=0.252 Sum_probs=98.3
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHH---HhCCCceEEcccCh-HHHhc
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIE---RVSNRGKIVEWAPQ-EKVLG 347 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~nv~~~~~~p~-~~ll~ 347 (468)
++++|++.-|+.... ..+..+++++.+. +.+++++.+.. ..+.+.+.+ ..++|+++.+|+++ .+++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 445777766776421 2345667777554 34555555432 111122222 22458899999987 57887
Q ss_pred CCCCCceeeccCchhHHHhhhcCCceecc-ccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 348 HSSVACFISHCGWNSTMEGLSMGVPFLCW-PYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 348 ~~~~~~~I~hGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+.. -+.+++.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHHCCHHHH
Confidence 7766 99999988999999999999985 6667778899988885 888754 35789999999999998866
Q ss_pred HHHHH
Q 012212 427 SNSLK 431 (468)
Q Consensus 427 ~~a~~ 431 (468)
++..+
T Consensus 343 ~~m~~ 347 (380)
T PRK13609 343 LQMKE 347 (380)
T ss_pred HHHHH
Confidence 55443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.73 E-value=8.5e-16 Score=141.79 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=75.3
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCcccCCchhHHHH--hCCCceEEcccCh-HHHhcCC
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL--QKPFLWVIRQDFMNGSRAKFPDGFIER--VSNRGKIVEWAPQ-EKVLGHS 349 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~-~~ll~~~ 349 (468)
+.|++++|.... ......+++++.+. +.++.++++.. .+..+.+.+. ..+|+++..++++ ..+|..+
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS------NPNLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 479999997632 22445666777654 34677777654 1222333322 2468898899987 5799666
Q ss_pred CCCceeeccCchhHHHhhhcCCceeccccccchhhhHHH
Q 012212 350 SVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNY 388 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 388 (468)
++ +|++|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 55 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=2e-14 Score=140.18 Aligned_cols=350 Identities=14% Similarity=0.097 Sum_probs=172.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
+|||++...+..||++|.. ++++|.++++++.++..... .+++.+.+ ..+.++.++ ...+..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~l~---------~~g~~~ 62 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE------SLFDMEELA---------VMGLVE 62 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc------cccCHHHhh---------hccHHH
Confidence 4689999999999999998 99999999888888875442 34432211 112222222 111222
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC-cccH--HHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT-VGSA--LEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
.+..+.... ..+..+.+.++. .+||+|+.-.. ..+. ...|...|||++.+.....+
T Consensus 63 ~~~~~~~~~-~~~~~~~~~l~~----~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~---------------- 121 (380)
T PRK00025 63 VLPRLPRLL-KIRRRLKRRLLA----EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW---------------- 121 (380)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH----cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh----------------
Confidence 222221111 123333333433 67999877332 2233 33467789998765321000
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCcee
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILP 240 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~ 240 (468)
.+.. ...... ...+|.++..+...-+.. ....-++.+
T Consensus 122 ------------------------------~~~~--~~~~~~----------~~~~d~i~~~~~~~~~~~-~~~g~~~~~ 158 (380)
T PRK00025 122 ------------------------------AWRQ--GRAFKI----------AKATDHVLALFPFEAAFY-DKLGVPVTF 158 (380)
T ss_pred ------------------------------hcCc--hHHHHH----------HHHHhhheeCCccCHHHH-HhcCCCeEE
Confidence 0000 000000 112344444443222221 112223666
Q ss_pred eccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCC
Q 012212 241 IGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFM 315 (468)
Q Consensus 241 vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~ 315 (468)
+|....+..... .....+...+.-.+++++|++..||........+..+++++..+ +.+++++.+..
T Consensus 159 ~G~p~~~~~~~~------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-- 230 (380)
T PRK00025 159 VGHPLADAIPLL------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-- 230 (380)
T ss_pred ECcCHHHhcccc------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--
Confidence 773222211000 01111222222223445666666665332223344555554322 22455543322
Q ss_pred CCcccCCchhHHHHhC----CCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccccc--------chh
Q 012212 316 NGSRAKFPDGFIERVS----NRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFS--------DQY 383 (468)
Q Consensus 316 ~~~~~~~~~~~~~~~~----~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~--------DQ~ 383 (468)
...+.+.+... -++.+.+- ....+++.+++ +|+-+|.+++ |++++|+|+|++|... .|.
T Consensus 231 -----~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~ 301 (380)
T PRK00025 231 -----KRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLV 301 (380)
T ss_pred -----hhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHH
Confidence 11122222221 23444321 23567766655 9999998887 9999999999985321 121
Q ss_pred hh-----HHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 384 QN-----RNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 384 ~n-----a~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
.| +..+... |++..+.... .+++.+.+++.++|+|++.+++..+-.+.++... ..|.+.+.++.+.+.+
T Consensus 302 ~~~~~~l~~~~~~~-~~~~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 302 KVPYVSLPNLLAGR-ELVPELLQEE---ATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred cCCeeehHHHhcCC-CcchhhcCCC---CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 22 2222222 3333333344 7899999999999999987766555554444432 3454545544444443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=5.3e-14 Score=137.03 Aligned_cols=163 Identities=13% Similarity=0.197 Sum_probs=106.7
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHh-C-CCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccCh-HHHhc
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLES-L-QKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQ-EKVLG 347 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~-~~ll~ 347 (468)
++++|+++.|+... ...+..+++++.+ . +.+++++.+.. ..+-+.+.+.. .+++.+.+|+.+ .+++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 45688888888642 2345555555432 2 34555554433 11112222222 357888899965 56886
Q ss_pred CCCCCceeeccCchhHHHhhhcCCceecc-ccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 348 HSSVACFISHCGWNSTMEGLSMGVPFLCW-PYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 348 ~~~~~~~I~hGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
.+++ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+++. |+|+.. -+.+++.++|.++++|++.+
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~-------~~~~~l~~~i~~ll~~~~~~ 342 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIA-------DTPEEAIKIVASLTNGNEQL 342 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEe-------CCHHHHHHHHHHHhcCHHHH
Confidence 6655 99998888999999999999998 6666778999999996 999875 36888999999999988644
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 427 SNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 427 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
+ ++++..+.. ....+....++.+++.+
T Consensus 343 ~---~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 343 T---NMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 3 444555443 22344444444444433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.59 E-value=1.1e-16 Score=136.67 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=96.7
Q ss_pred EEEEEecccccC-CHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccC-hHHHhcCCCC
Q 012212 276 VVYVAFGSVAVL-SQQQFAELALGLES--LQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAP-QEKVLGHSSV 351 (468)
Q Consensus 276 vv~vs~Gs~~~~-~~~~~~~~~~a~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~~ 351 (468)
+|+|+.||.... -...+..+...+.. ...+++++++.. ........+ +....|+++.+|++ ..+++..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~----~~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN----NYEELKIKV-ENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC----ECHHHCCCH-CCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC----cHHHHHHHH-hccCCcEEEEechhhHHHHHHHcCE
Confidence 589999986321 01111222333322 245677777655 111111111 11136889999999 7889977766
Q ss_pred CceeeccCchhHHHhhhcCCceecccccc----chhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHH
Q 012212 352 ACFISHCGWNSTMEGLSMGVPFLCWPYFS----DQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 352 ~~~I~hGG~~s~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
+|||||.||++|++++|+|+|++|... +|..||..+++. |.|+.+.... .+.+.|.++|.+++.++..+.
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~---~~~~~L~~~i~~l~~~~~~~~ 149 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESE---LNPEELAEAIEELLSDPEKLK 149 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC----SCCCHHHHHHCHCCCHH-SH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCccc---CCHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999988 999999999995 9999999887 889999999999999888533
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.55 E-value=2.9e-12 Score=124.64 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=74.7
Q ss_pred CCceEEcccCh-HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchh-hhHHHHHHHhhceeEeeccCCCccCH
Q 012212 332 NRGKIVEWAPQ-EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQY-QNRNYICEAWKIGLQFFADENGIITR 409 (468)
Q Consensus 332 ~nv~~~~~~p~-~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~lG~g~~l~~~~~~~~t~ 409 (468)
.++++.+|+++ .+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCH
Confidence 46788899986 668865655 999999999999999999999998766675 799889886 999764 368
Q ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Q 012212 410 QEIQRKVLTLLKN-DDIRSNSLKLKEVARK 438 (468)
Q Consensus 410 ~~l~~ai~~~l~~-~~~r~~a~~l~~~~~~ 438 (468)
+++.++|.++++| ++.+++ +++..+.
T Consensus 335 ~~la~~i~~ll~~~~~~~~~---m~~~~~~ 361 (382)
T PLN02605 335 KEIARIVAEWFGDKSDELEA---MSENALK 361 (382)
T ss_pred HHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 9999999999988 654443 4444444
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.46 E-value=2.8e-11 Score=117.37 Aligned_cols=334 Identities=11% Similarity=0.007 Sum_probs=177.4
Q ss_pred CccChHHHHHHHHHHHH--CCCEEE---EEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHH
Q 012212 14 AQGHVAPLMKLATKIAE--RAIKVT---VVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESV 88 (468)
Q Consensus 14 ~~GH~~p~~~LA~~L~~--rGH~Vt---~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (468)
|.|-=.-.++||++|.+ .|++|. |++..... ++.. ....+ .+..+|.+-- ...++...+...
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~---e~~~-----ip~~g-~~~~~~sgg~----~~~~~~~~~~~~ 72 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY---QNLG-----IPIIG-PTKELPSGGF----SYQSLRGLLRDL 72 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH---hhCC-----CceeC-CCCCCCCCCc----cCCCHHHHHHHH
Confidence 44444567789999998 699999 99887543 2211 11122 4444443221 223344444444
Q ss_pred HH-HhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCCCCcc
Q 012212 89 AR-AMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFA 167 (468)
Q Consensus 89 ~~-~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (468)
.. .... +...+..+++.. .+||+||.=.-+. ...+|...|+|++++.+.-..... .+..++
T Consensus 73 ~~gl~~~-~~~~~~~~~~~~--~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-------------~~~~~~- 134 (396)
T TIGR03492 73 RAGLVGL-TLGQWRALRKWA--KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-------------ESGPRR- 134 (396)
T ss_pred HhhHHHH-HHHHHHHHHHHh--hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-------------cCCCCC-
Confidence 43 2222 222222333321 2699999876655 888999999999986542221100 000000
Q ss_pred cccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCCceeeccccCC
Q 012212 168 ILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPNILPIGPLLAS 247 (468)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~v~~vGpl~~~ 247 (468)
...+...-++|... .+| . +..+. .+.++.++..+...-++. ....-++.++|--..+
T Consensus 135 -~~~~~~~~~~G~~~-----~p~---e----~n~l~---------~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~d 191 (396)
T TIGR03492 135 -SPSDEYHRLEGSLY-----LPW---E----RWLMR---------SRRCLAVFVRDRLTARDL-RRQGVRASYLGNPMMD 191 (396)
T ss_pred -ccchhhhccCCCcc-----CHH---H----HHHhh---------chhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHHh
Confidence 00000111121111 000 0 00110 124555655553333332 2333488899954444
Q ss_pred CCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCcccCCc
Q 012212 248 NHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL----QKPFLWVIRQDFMNGSRAKFP 323 (468)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~l~~~~~~~~~~~~~~~~ 323 (468)
.-... ... . + .++.++|.+--||....-...+..+++++..+ +..+++.+.+.. ..
T Consensus 192 ~l~~~-------~~~---~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-------~~ 251 (396)
T TIGR03492 192 GLEPP-------ERK---P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-------SL 251 (396)
T ss_pred cCccc-------ccc---c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-------CH
Confidence 32110 000 0 1 12345788888887433333444566665544 345666663331 11
Q ss_pred hhHHHHh-------------------CCCceEEccc-ChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchh
Q 012212 324 DGFIERV-------------------SNRGKIVEWA-PQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQY 383 (468)
Q Consensus 324 ~~~~~~~-------------------~~nv~~~~~~-p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~ 383 (468)
+.+.+.. .+++.+..+. ...++++.+++ +|+-+|..| .|+...|+|+|++|.-..|.
T Consensus 252 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~ 328 (396)
T TIGR03492 252 EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF 328 (396)
T ss_pred HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH
Confidence 1121111 1234555554 34678866666 999999776 99999999999999766676
Q ss_pred hhHHHHHHH--h-hceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHH
Q 012212 384 QNRNYICEA--W-KIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSL 430 (468)
Q Consensus 384 ~na~rv~~~--l-G~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~ 430 (468)
||...++. + |.++.+.. .+.+.|.+++.++|+|++.+++..
T Consensus 329 -na~~~~~~~~l~g~~~~l~~-----~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 329 -TYGFAEAQSRLLGGSVFLAS-----KNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred -HHHHHHhhHhhcCCEEecCC-----CCHHHHHHHHHHHHcCHHHHHHHH
Confidence 98766651 1 66666654 456999999999999987665544
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.45 E-value=1.5e-10 Score=111.80 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=78.0
Q ss_pred hCCCceEEcccChHH---HhcCCCCCceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 330 VSNRGKIVEWAPQEK---VLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 330 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
..+|+.+.+|+|+.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+.
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-
Confidence 367889999999765 6766655 886654 47899999999999988644 456667764 88988865
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
-+.+++.++|.+++.|++.+++..+-+.+..+ .-+.....+++++
T Consensus 317 ----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 361 (364)
T cd03814 317 ----GDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLE 361 (364)
T ss_pred ----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHH
Confidence 46888999999999999876655554444432 2233444444444
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.43 E-value=1.3e-13 Score=113.90 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=83.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGE 86 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (468)
|+|.+.++.||++|+++||++|++|||+|++++++.+.+.+++ .++.|..++.. .... ..........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~----------~Gl~~~~~~~~-~~~~-~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA----------AGLEFVPIPGD-SRLP-RSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH----------TT-EEEESSSC-GGGG-HHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc----------cCceEEEecCC-cCcC-cccchhhhhh
Confidence 7899999999999999999999999999999999999999988 66999998866 0000 0000111111
Q ss_pred HHHHH--hhHHHHHHHHHHh-----hCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchH
Q 012212 87 SVARA--MRGCLRDLIEKIN-----QSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 87 ~~~~~--~~~~~~~ll~~l~-----~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
...+. ......+.++... .......+|+++.+.....+..+|+++|||++.....+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11111 1111222222222 1112245788888988888999999999999998776653
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=2e-11 Score=106.50 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccC-hHHHhcCCCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAP-QEKVLGHSSVA 352 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p-~~~ll~~~~~~ 352 (468)
-|+|++|.. .+..+...++..+.+....+-++++.. .+-..++..+. .+|..+.-... +..++..+++
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~- 230 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL- 230 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch-
Confidence 599999875 134466788888887776666777633 23334444333 46677664444 5678866655
Q ss_pred ceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHH
Q 012212 353 CFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKL 432 (468)
Q Consensus 353 ~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l 432 (468)
.|+.||. |++|++.-|+|.+++|+..-|--.|...+. +|+-..++.. ++...+...+.++.+|...|.+.-.-
T Consensus 231 -aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 231 -AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred -heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 9999887 699999999999999999999999999988 5887776643 67777778888999988877766544
Q ss_pred HHH
Q 012212 433 KEV 435 (468)
Q Consensus 433 ~~~ 435 (468)
++.
T Consensus 304 ~~~ 306 (318)
T COG3980 304 SKL 306 (318)
T ss_pred cce
Confidence 433
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.38 E-value=1.3e-09 Score=109.16 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=86.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh-CCCceEEcccChHH---HhcCCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV-SNRGKIVEWAPQEK---VLGHSSV 351 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~---ll~~~~~ 351 (468)
.+++..|+.. ....+..++++++..+.-.++.++.+ ...+.+.+.. ..+|++.+++|+.+ ++..+++
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv 334 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV 334 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE
Confidence 3455567763 33456677888877643233344433 1222332222 35788889998655 6655555
Q ss_pred CceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHH---HhhceeEeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 352 ACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICE---AWKIGLQFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 352 ~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
+|.-.. ..++.||+++|+|+|+.... .....++. . +.|..++.. +.+++.++|.++++|++
T Consensus 335 --~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~-----d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 335 --FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG-----DVDDCVEKLETLLADPE 402 (465)
T ss_pred --EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC-----CHHHHHHHHHHHHhCHH
Confidence 885432 35789999999999987532 34444554 4 778888763 58999999999999988
Q ss_pred HHHHHHHHH
Q 012212 425 IRSNSLKLK 433 (468)
Q Consensus 425 ~r~~a~~l~ 433 (468)
.+++..+-+
T Consensus 403 ~~~~~~~~a 411 (465)
T PLN02871 403 LRERMGAAA 411 (465)
T ss_pred HHHHHHHHH
Confidence 655444433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.37 E-value=7e-10 Score=106.84 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee----ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS----HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~----hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
.+++++.+|+|+.+ ++..+++ +|+ ..| ..++.||+++|+|+|+.+ .......+... +.|..++.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i~~~-~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELVRDG-VNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHhcCC-CcEEEECC-
Confidence 57888899998655 5756655 773 233 458999999999999874 34566666663 57888866
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHH
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKL 432 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l 432 (468)
-+.+++.++|.++++|++.++...+-
T Consensus 314 ----~d~~~l~~~i~~l~~~~~~~~~~~~~ 339 (359)
T cd03823 314 ----GDAEDLAAALERLIDDPDLLERLRAG 339 (359)
T ss_pred ----CCHHHHHHHHHHHHhChHHHHHHHHh
Confidence 35899999999999988865554443
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.36 E-value=2.8e-09 Score=104.49 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee---ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|++.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+. |.......+... ..|+.++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC--
Confidence 36788889999865 5555655 663 2333 4899999999999987 445566666663 56877765
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNS 429 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a 429 (468)
-+.++++++|.++++|++.+++.
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~~l 373 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRARL 373 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHH
Confidence 46999999999999998754443
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.30 E-value=1.2e-09 Score=106.37 Aligned_cols=350 Identities=16% Similarity=0.044 Sum_probs=170.9
Q ss_pred EEEEEcCC----CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCH
Q 012212 6 HVLVIPYP----AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDP 81 (468)
Q Consensus 6 ~Il~~~~~----~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (468)
||++++.. ..|+......++++|+++||+|++++............. .......++++..++....... ..+
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~ 76 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKN---GLL 76 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCcc---chH
Confidence 46666443 258999999999999999999999998654433221000 0000114566665554322111 111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc----cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhh
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG----SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
...... ..........+.. .. .+||+|++..... .+..++...++|++..............
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~--~~----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~------- 142 (394)
T cd03794 77 KRLLNY-LSFALSALLALLK--RR----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVAL------- 142 (394)
T ss_pred HHHHhh-hHHHHHHHHHHHh--cc----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHc-------
Confidence 111111 1111111111111 11 6799999996222 3344566679999876542110000000
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhh-hccC-
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPA-CDLI- 235 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~-~~~~- 235 (468)
+. ............... ...+..++.++..+....+.-. ....
T Consensus 143 -~~--------------------------------~~~~~~~~~~~~~~~--~~~~~~~d~vi~~s~~~~~~~~~~~~~~ 187 (394)
T cd03794 143 -GL--------------------------------LKNGSLLYRLLRKLE--RLIYRRADAIVVISPGMREYLVRRGVPP 187 (394)
T ss_pred -cC--------------------------------ccccchHHHHHHHHH--HHHHhcCCEEEEECHHHHHHHHhcCCCc
Confidence 00 000000001111111 1124577888877765544321 1111
Q ss_pred CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHHhC-CCCEEEEEcCC
Q 012212 236 PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLESL-QKPFLWVIRQD 313 (468)
Q Consensus 236 p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~l~~~~~~ 313 (468)
.++..+........... ........... ...++.+++..|+... ...+.+..++..+.+. +.++++ ++.+
T Consensus 188 ~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~ 259 (394)
T cd03794 188 EKISVIPNGVDLELFKP-----PPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDG 259 (394)
T ss_pred CceEEcCCCCCHHHcCC-----ccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCc
Confidence 24444443222111100 00000000111 1223466666777632 2233334444444333 333333 3322
Q ss_pred CCCCcccCCchhHHH----HhCCCceEEcccChHH---HhcCCCCCceeeccC---------chhHHHhhhcCCceeccc
Q 012212 314 FMNGSRAKFPDGFIE----RVSNRGKIVEWAPQEK---VLGHSSVACFISHCG---------WNSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 314 ~~~~~~~~~~~~~~~----~~~~nv~~~~~~p~~~---ll~~~~~~~~I~hGG---------~~s~~eal~~GvP~v~~P 377 (468)
.....+.+ ...+|+++.+++|+.+ ++..+++ +|.... .+++.||+++|+|+|+.+
T Consensus 260 -------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~ 330 (394)
T cd03794 260 -------PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASV 330 (394)
T ss_pred -------ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEec
Confidence 11122221 2257889999998755 5655655 764322 344799999999999986
Q ss_pred cccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012212 378 YFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEV 435 (468)
Q Consensus 378 ~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~ 435 (468)
..+. ...+.+. +.|..++. -+.+++.++|.++++|++.+++..+-+.+
T Consensus 331 ~~~~----~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 378 (394)
T cd03794 331 DGES----AELVEEA-GAGLVVPP-----GDPEALAAAILELLDDPEERAEMGENGRR 378 (394)
T ss_pred CCCc----hhhhccC-CcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 6543 3344442 67777765 36899999999999988866555444433
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.30 E-value=2.2e-09 Score=105.27 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.+|+.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+... ......+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCC--
Confidence 46788889999866 4656555 7754 223689999999999998753 3456667774 78888865
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNSL 430 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a~ 430 (468)
-+.++++++|.++++|++.+++..
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~ 376 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLS 376 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHH
Confidence 469999999999999887554443
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.30 E-value=5.9e-09 Score=100.33 Aligned_cols=319 Identities=16% Similarity=0.071 Sum_probs=166.5
Q ss_pred ccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhH
Q 012212 15 QGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRG 94 (468)
Q Consensus 15 ~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (468)
.|+...+..+++.|.+.||+|++++............ ........ .. .... ...........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~--------~~~~~~~~-----~~---~~~~--~~~~~~~~~~~ 75 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV--------GGIVVVRP-----PP---LLRV--RRLLLLLLLAL 75 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee--------cCcceecC-----Cc---cccc--chhHHHHHHHH
Confidence 6899999999999999999999999976443222100 00000000 00 0000 00111111111
Q ss_pred HHHHHHHHHhhCCCCCCceEEEecCCcccHH--HHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCCCCcccccCC
Q 012212 95 CLRDLIEKINQSNDCEPIRCVIADVTVGSAL--EVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDG 172 (468)
Q Consensus 95 ~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 172 (468)
.+..+++. .+||+|++........ ..+...++|++...........
T Consensus 76 ~~~~~~~~-------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------------------- 123 (374)
T cd03801 76 RLRRLLRR-------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP------------------------- 123 (374)
T ss_pred HHHHHhhh-------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc-------------------------
Confidence 23333333 5699999997766444 4778889999876542221100
Q ss_pred cccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC---CCceeeccccCCCC
Q 012212 173 LISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI---PNILPIGPLLASNH 249 (468)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---p~v~~vGpl~~~~~ 249 (468)
. .. ........ ..........++.+++.+....+.-..... .++..+........
T Consensus 124 ----------------~-~~---~~~~~~~~--~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (374)
T cd03801 124 ----------------G-NE---LGLLLKLA--RALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTER 181 (374)
T ss_pred ----------------c-cc---hhHHHHHH--HHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccc
Confidence 0 00 00000000 111122345778888888765554322222 24555543332211
Q ss_pred CCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC---CCEEEEEcCCCCCCcccCCchhH
Q 012212 250 SGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ---KPFLWVIRQDFMNGSRAKFPDGF 326 (468)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 326 (468)
.. ........-.. ...++.+++.+|+.. ...-+..+++++..+. .++-+.+.+. ......+
T Consensus 182 ~~-------~~~~~~~~~~~-~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~------~~~~~~~ 245 (374)
T cd03801 182 FR-------PAPRAARRRLG-IPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGD------GPLREEL 245 (374)
T ss_pred cC-------ccchHHHhhcC-CcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeC------cHHHHHH
Confidence 11 00000000011 112235666667753 2223344445443322 2333333222 0111122
Q ss_pred HH-----HhCCCceEEcccChHH---HhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhh
Q 012212 327 IE-----RVSNRGKIVEWAPQEK---VLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK 394 (468)
Q Consensus 327 ~~-----~~~~nv~~~~~~p~~~---ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG 394 (468)
.+ ...+++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+++. +
T Consensus 246 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~ 318 (374)
T cd03801 246 EALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-E 318 (374)
T ss_pred HHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-c
Confidence 11 1367889999997644 6756555 773 3556799999999999998754 5566677754 7
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
.|...+. .+.+++.++|.++++|++.+++..+-+
T Consensus 319 ~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 319 TGLLVPP-----GDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred ceEEeCC-----CCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 8887765 458999999999999988655444433
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=9e-09 Score=100.00 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+++++.++.++ ..++..+++ +|. -|...++.||+++|+|+|+. |....+..+++. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC----
Confidence 467888888765 567766655 762 34456999999999999986 444566666663 57877765
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIRSNSL 430 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r~~a~ 430 (468)
-+.+++.++|.++++|++.+++..
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~ 344 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFS 344 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHH
Confidence 368999999999999887544433
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.28 E-value=6.6e-09 Score=99.74 Aligned_cols=326 Identities=14% Similarity=0.082 Sum_probs=166.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH-HHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK-IIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~-i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
||++++....|+......++++|.++||+|++++....... ... .++++..++..... ......
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~ 65 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA----------LGVKVIPIPLDRRG-----INPFKD 65 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc----------CCceEEeccccccc-----cChHhH
Confidence 57888777789999999999999999999999998765543 111 55666666543211 111111
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCC
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIID 162 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 162 (468)
+.. +..+.+.++. .+||+|++..... .+..+++..+.|.+...........
T Consensus 66 ~~~--------~~~~~~~~~~----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------- 118 (359)
T cd03808 66 LKA--------LLRLYRLLRK----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF--------------- 118 (359)
T ss_pred HHH--------HHHHHHHHHh----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh---------------
Confidence 111 1222233333 5699999886544 2334444355555443321110000
Q ss_pred CCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccC---CCce
Q 012212 163 PNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLI---PNIL 239 (468)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---p~v~ 239 (468)
.... ..........+ .....++.++..+....+.-..... ....
T Consensus 119 ------------------------------~~~~-~~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~ 165 (359)
T cd03808 119 ------------------------------TSGG-LKRRLYLLLER--LALRFTDKVIFQNEDDRDLALKLGIIKKKKTV 165 (359)
T ss_pred ------------------------------ccch-hHHHHHHHHHH--HHHhhccEEEEcCHHHHHHHHHhcCCCcCceE
Confidence 0000 00111111111 1133557777777654443211111 1222
Q ss_pred eeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc
Q 012212 240 PIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLESLQKPFLWVIRQDFMNGS 318 (468)
Q Consensus 240 ~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~ 318 (468)
.+.|...+.... ...... ..+++.+++..|+... ...+.+..++..+.+.+..+.+.+-+.....
T Consensus 166 ~~~~~~~~~~~~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~- 231 (359)
T cd03808 166 LIPGSGVDLDRF------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE- 231 (359)
T ss_pred EecCCCCChhhc------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc-
Confidence 222221111100 000000 1223467777787632 2233333444444432333333322221110
Q ss_pred ccCCchhHHHH--hCCCceEEcccCh-HHHhcCCCCCceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHH
Q 012212 319 RAKFPDGFIER--VSNRGKIVEWAPQ-EKVLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICE 391 (468)
Q Consensus 319 ~~~~~~~~~~~--~~~nv~~~~~~p~-~~ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 391 (468)
.......... ..+++++.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+... ......+++
T Consensus 232 -~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~~~~~i~~ 304 (359)
T cd03808 232 -NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDV----PGCREAVID 304 (359)
T ss_pred -hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecC----CCchhhhhc
Confidence 0000000111 2467787777544 567866665 775433 5789999999999998744 344556665
Q ss_pred HhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 392 AWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 392 ~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
. +.|..++. -+.+++.++|.+++.|++.+++..+-+
T Consensus 305 ~-~~g~~~~~-----~~~~~~~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03808 305 G-VNGFLVPP-----GDAEALADAIERLIEDPELRARMGQAA 340 (359)
T ss_pred C-cceEEECC-----CCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4 77887765 368999999999999987655444333
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.27 E-value=1.9e-08 Score=99.04 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCceEE-cccChHH---HhcCCCCCceee-c------cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 332 NRGKIV-EWAPQEK---VLGHSSVACFIS-H------CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 332 ~nv~~~-~~~p~~~---ll~~~~~~~~I~-h------GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
+|+.+. +|+|..+ ++..+++ +|. + |-..++.||+++|+|+|+.. .......+++. +.|+.++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEEC
Confidence 456655 7888655 5655655 763 1 12457999999999999873 34566677774 6788772
Q ss_pred ccCCCccCHHHHHHHHHHHhcC---hHHHHH
Q 012212 401 ADENGIITRQEIQRKVLTLLKN---DDIRSN 428 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~---~~~r~~ 428 (468)
+.++++++|.++++| ++.+++
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~ 390 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNS 390 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHH
Confidence 589999999999998 554433
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.26 E-value=6e-09 Score=100.79 Aligned_cols=83 Identities=16% Similarity=0.339 Sum_probs=63.0
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.+|+.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+.. ....+..+++. +.|..++..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCCC
Confidence 57888899999865 5666655 7743 33478999999999999874 44566666764 7888887643
Q ss_pred CCccCHHHHHHHHHHHhcChHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
. ++.+++.++++|++.+
T Consensus 331 -----~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 331 -----E-ALAEALLRLLQDPELR 347 (374)
T ss_pred -----H-HHHHHHHHHHhChHHH
Confidence 2 8999999999998744
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.25 E-value=8.7e-08 Score=94.53 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=74.5
Q ss_pred CCceEEcccChHH---HhcCCCCCceeeccCc------hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 332 NRGKIVEWAPQEK---VLGHSSVACFISHCGW------NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 332 ~nv~~~~~~p~~~---ll~~~~~~~~I~hGG~------~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
+|+++.+|+|+.+ ++..+++-++.+..+. +.+.|++++|+|+|+....+. .....++ +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC-
Confidence 4788889998754 6766776444444332 346899999999999864321 1122232 57777765
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcc
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLIS 462 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 462 (468)
-+.++++++|.++++|++.+++..+-+... +.+.=+....++++++.+++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~---~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREY---AERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHHhc
Confidence 368999999999999887554433333222 11122445667777777766553
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.23 E-value=1.2e-08 Score=101.00 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHhcCCCCCceee-----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHH
Q 012212 343 EKVLGHSSVACFIS-----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVL 417 (468)
Q Consensus 343 ~~ll~~~~~~~~I~-----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~ 417 (468)
..+++.+++ ++. -||..++.||+++|+|+|+.|...++.+....+.+. |.++.. -+.+++.++|.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------CCHHHHHHHHH
Confidence 446655554 433 134446999999999999999988888888777664 666543 35899999999
Q ss_pred HHhcChHHHHHHHHHHHHH
Q 012212 418 TLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 418 ~~l~~~~~r~~a~~l~~~~ 436 (468)
++++|++.+++..+-+...
T Consensus 384 ~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 384 YLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 9999988766554444443
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.20 E-value=3.2e-08 Score=95.76 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCceEEcccC-hH---HHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 331 SNRGKIVEWAP-QE---KVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 331 ~~nv~~~~~~p-~~---~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
..++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+... ......+... +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-
Confidence 56778889998 43 35755555 8774 335899999999999998643 3444455552 57777665
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
.+.+++.+++.++++|++.+++..+-+..... +.=+.....+++++.++
T Consensus 315 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 ----GDPEDLAEGIEWLLADPDEREELGEAARELAE---NEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHh
Confidence 46899999999999988744333322222211 12244455555555443
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.18 E-value=8e-08 Score=94.61 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee---ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS---HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|++.+++|+.+ ++..+++ +|. +.| ..++.||+++|+|+|+... ......+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC--
Confidence 46789999998754 6766665 763 233 4689999999999998743 3455556663 67887765
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
-+.++++++|.++++|++.+++...-+.+..+ .=+-...++++++.+.+
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~----~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHAA----GFSWAATADGLLSSYRD 401 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 36899999999999988765554444333222 11334444555544443
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.17 E-value=3.4e-08 Score=95.22 Aligned_cols=134 Identities=15% Similarity=0.223 Sum_probs=84.9
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCcccCCchhHHH-----HhCCCceEEcccChHH---Hh
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQ-KPFLWVIRQDFMNGSRAKFPDGFIE-----RVSNRGKIVEWAPQEK---VL 346 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~p~~~---ll 346 (468)
.+++..|+.. ...-+..+++++.++. .++++...+. ....+.+ ...+||.+.+|+|+.+ ++
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 4666677763 2234556777777666 3444433222 1122221 1257899999999754 66
Q ss_pred cCCCCCcee--e---ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHH-HhhceeEeeccCCCccCHHHHHHHHHHH
Q 012212 347 GHSSVACFI--S---HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICE-AWKIGLQFFADENGIITRQEIQRKVLTL 419 (468)
Q Consensus 347 ~~~~~~~~I--~---hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-~lG~g~~l~~~~~~~~t~~~l~~ai~~~ 419 (468)
..+++ +| + +.|. .++.||+++|+|+|+....+.. ..+.. . +.|...+. -+.++++++|.++
T Consensus 262 ~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-----~d~~~~~~~i~~l 329 (357)
T cd03795 262 AACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-----GDPAALAEAIRRL 329 (357)
T ss_pred HhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-----CCHHHHHHHHHHH
Confidence 55655 55 3 2343 4799999999999997544333 33332 3 67877765 4699999999999
Q ss_pred hcChHHHHHHHH
Q 012212 420 LKNDDIRSNSLK 431 (468)
Q Consensus 420 l~~~~~r~~a~~ 431 (468)
++|++.+++..+
T Consensus 330 ~~~~~~~~~~~~ 341 (357)
T cd03795 330 LEDPELRERLGE 341 (357)
T ss_pred HHCHHHHHHHHH
Confidence 999875554443
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.15 E-value=8.1e-08 Score=92.67 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCCceEEcccChHH---HhcCCCCCcee----eccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFI----SHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I----~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.+|+.+.+++++.+ ++..+++ +| +-|..+++.||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC--
Confidence 57888899999754 5655555 66 33556889999999999998754 3455566663 66777765
Q ss_pred CCccCHHHHHHHHHHHhcChHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
-+.+++.++|.+++++++.
T Consensus 329 ---~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 329 ---GDPEALAEAILRLLADPWL 347 (377)
T ss_pred ---CCHHHHHHHHHHHhcCcHH
Confidence 4699999999999999884
No 63
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.15 E-value=1.9e-09 Score=104.48 Aligned_cols=136 Identities=12% Similarity=0.156 Sum_probs=84.0
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccChH---H
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQE---K 344 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~~---~ 344 (468)
++++++.+.... ..+.+..+++++.++ +.++++...+. ......+.+.. .+|+++.+.+++. .
T Consensus 198 ~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLN------PVVREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCC------hHHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 467666543321 124466777776553 33444443322 01111122222 3678888777654 4
Q ss_pred HhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 345 VLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 345 ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
++.+++ ++|+..|.. +.||.++|+|+|+++..++++. +.+. |.++.++ .++++|.+++.++++|++
T Consensus 271 ~l~~ad--~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 271 LAANSH--LILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDPD 336 (365)
T ss_pred HHHhCC--EEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhChH
Confidence 565554 499987654 7999999999999876555553 2334 7776653 368999999999999988
Q ss_pred HHHHHHH
Q 012212 425 IRSNSLK 431 (468)
Q Consensus 425 ~r~~a~~ 431 (468)
.+++...
T Consensus 337 ~~~~~~~ 343 (365)
T TIGR00236 337 EYKKMSN 343 (365)
T ss_pred HHHHhhh
Confidence 7766543
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.13 E-value=2.1e-07 Score=91.24 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec---cC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH---CG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h---GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|++.+++|+.+ ++..+++ ++.. -| ..++.||+++|+|+|+.-. ......+... +.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC---
Confidence 56889999999864 5666655 6642 22 3578999999999998743 3344556553 5677664
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSN 428 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~ 428 (468)
.+.++++++|.++++|++.+++
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHH
Confidence 3589999999999999875444
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.13 E-value=7.8e-08 Score=91.81 Aligned_cols=94 Identities=15% Similarity=0.257 Sum_probs=65.0
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHHHhh-ceeEeeccCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK-IGLQFFADEN 404 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~ 404 (468)
.+++++.++... ..++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+ ..+... | .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC---
Confidence 456777776433 557766655 776542 57899999999999987543332 233343 5 7877765
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~ 436 (468)
.+.+++.++|.++++|++.+++..+-+..+
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 468999999999999998776665554433
No 66
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.12 E-value=1.3e-07 Score=99.50 Aligned_cols=404 Identities=11% Similarity=0.067 Sum_probs=199.4
Q ss_pred CCCEEEEEcCCCc---------------cChHHHHHHHHHHHHCC--CEEEEEECCcchHHHHH-hhhh-----------
Q 012212 3 RQPHVLVIPYPAQ---------------GHVAPLMKLATKIAERA--IKVTVVNTQFIHKKIIA-SLQE----------- 53 (468)
Q Consensus 3 ~~~~Il~~~~~~~---------------GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~~-~~~~----------- 53 (468)
+.+.|++++..+. |+..=...||++|+++| |+|.++|-......+.. ++..
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 4577877754432 35555789999999998 99999998654322110 0000
Q ss_pred --hccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHH----HHHHhhCCCCCCceEEEecCCcc--cHH
Q 012212 54 --KAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDL----IEKINQSNDCEPIRCVIADVTVG--SAL 125 (468)
Q Consensus 54 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----l~~l~~~~~~~~pDlvi~D~~~~--~~~ 125 (468)
......+++.++.+|-+-.........++.++..|.+.+...+..+ .+.+... ....||+|-+..... .+.
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~-~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSG-HPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-cCCCCCEEEECcchHHHHHH
Confidence 0001225788888886643221133344555555555544443322 2222110 012499999985444 666
Q ss_pred HHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHH
Q 012212 126 EVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGI 205 (468)
Q Consensus 126 ~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (468)
.+++.+|||+|....+......- ..+. .+.. .+.-.. ... .....
T Consensus 327 ~L~~~lgVP~V~T~HSLgr~K~~----------~ll~---------------~g~~-------~~~~~~-~~y--~~~~R 371 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHSLGRDKLE----------QLLK---------------QGRM-------SKEEIN-STY--KIMRR 371 (1050)
T ss_pred HHHHhhCCCEEEECccchhhhhh----------hhcc---------------cccc-------cccccc-ccc--chHHH
Confidence 78899999988866543211000 0000 0000 000000 000 00001
Q ss_pred HHHHHHhhccccEEEEcCcccCChhhhc-------------------------cCCCceeeccccCCC-CCCC---CC--
Q 012212 206 ICAVIQAVKISNWIINNSVYELDSPACD-------------------------LIPNILPIGPLLASN-HSGD---LD-- 254 (468)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~le~~~~~-------------------------~~p~v~~vGpl~~~~-~~~~---~~-- 254 (468)
+.--...+..++.++..|..+-+-.+.- ..+++..|.|-+... ..+. ..
T Consensus 372 i~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~ 451 (1050)
T TIGR02468 372 IEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGE 451 (1050)
T ss_pred HHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccch
Confidence 1111123557888888887665421000 123444443322210 0000 00
Q ss_pred ------CCC---CCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCccc
Q 012212 255 ------GNF---WSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ-----KPFLWVIRQDFMNGSRA 320 (468)
Q Consensus 255 ------~~~---~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~l~~~~~~~~~~~~~ 320 (468)
... +....++..|+.. ++++ +++..|... +.+-+..+++|+..+. ..+.++++.+...+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~r~~~~-pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~ 527 (1050)
T TIGR02468 452 TEGNEEHPAKPDPPIWSEIMRFFTN-PRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMS 527 (1050)
T ss_pred hcccccccccccchhhHHHHhhccc-CCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhh
Confidence 000 0011234456543 3333 445557653 3334556677665442 24444554331000000
Q ss_pred ----CCchhH---HHH--hCCCceEEcccChHH---HhcCCC--CCceeec---cCc-hhHHHhhhcCCceeccccccch
Q 012212 321 ----KFPDGF---IER--VSNRGKIVEWAPQEK---VLGHSS--VACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQ 382 (468)
Q Consensus 321 ----~~~~~~---~~~--~~~nv~~~~~~p~~~---ll~~~~--~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ 382 (468)
..-..+ .++ +.++|.+.+++++.+ ++..++ .++||.- =|. .++.||+++|+|+|+....
T Consensus 528 ~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG--- 604 (1050)
T TIGR02468 528 SGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG--- 604 (1050)
T ss_pred ccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC---
Confidence 000111 112 257788889988765 443331 2347764 343 6899999999999998542
Q ss_pred hhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 383 YQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 383 ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
.....++.. .-|+.++. -+.+.|+++|.++++|++.+++..+-+.+... .=+-...++++++.+..+
T Consensus 605 -G~~EII~~g-~nGlLVdP-----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 605 -GPVDIHRVL-DNGLLVDP-----HDQQAIADALLKLVADKQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred -CcHHHhccC-CcEEEECC-----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHH
Confidence 334444442 56888876 46899999999999998866555444333222 113344555555555443
No 67
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.07 E-value=1.8e-07 Score=92.96 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCCceEEcccChHHH---hcCC--CCCceeecc---C-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeec
Q 012212 331 SNRGKIVEWAPQEKV---LGHS--SVACFISHC---G-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 331 ~~nv~~~~~~p~~~l---l~~~--~~~~~I~hG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~ 401 (468)
.++|++.+++++.++ +..+ ++++||... | ..++.||+++|+|+|+.. .......+.+. ..|+.++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~----~gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATD----DGGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeC----CCCcHHHhcCC-CcEEEeCC
Confidence 577888888887654 5433 235587643 3 469999999999999884 44456666553 56888776
Q ss_pred cCCCccCHHHHHHHHHHHhcChHHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
-+.++++++|.++++|++.++
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~ 411 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQ 411 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHH
Confidence 468999999999999987543
No 68
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.07 E-value=3.1e-07 Score=85.92 Aligned_cols=302 Identities=15% Similarity=0.053 Sum_probs=154.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
|||.+--.. .-|+.-+..+.++|.++||+|.+.+-... .+.+.... -++++..+.... .+....
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~------yg~~y~~iG~~g-------~~~~~K 64 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL------YGIDYIVIGKHG-------DSLYGK 64 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH------cCCCeEEEcCCC-------CCHHHH
Confidence 566654322 24999999999999999999999988653 22222111 456666665321 122222
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCCCCC
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGIIDPN 164 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 164 (468)
+....... ..+++.+++ .+||++|+- ....+..+|..+|+|+|.+.-..........
T Consensus 65 l~~~~~R~----~~l~~~~~~----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L-------------- 121 (335)
T PF04007_consen 65 LLESIERQ----YKLLKLIKK----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL-------------- 121 (335)
T ss_pred HHHHHHHH----HHHHHHHHh----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee--------------
Confidence 22222222 233333333 569999974 4456778999999999998764332211000
Q ss_pred CcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEE-EcCcccCChhhhccCCCceeecc
Q 012212 165 GFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWII-NNSVYELDSPACDLIPNILPIGP 243 (468)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~le~~~~~~~p~v~~vGp 243 (468)
..| .......+.. .. ...+. ....-+.+. .++..++-+- .++.
T Consensus 122 -----------t~P---la~~i~~P~~-~~-----~~~~~-------~~G~~~~i~~y~G~~E~ayl-~~F~-------- 165 (335)
T PF04007_consen 122 -----------TLP---LADVIITPEA-IP-----KEFLK-------RFGAKNQIRTYNGYKELAYL-HPFK-------- 165 (335)
T ss_pred -----------ehh---cCCeeECCcc-cC-----HHHHH-------hcCCcCCEEEECCeeeEEee-cCCC--------
Confidence 000 0000001100 00 00000 000001121 3333333222 1111
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccc----ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcc
Q 012212 244 LLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSV----AVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSR 319 (468)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~----~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~ 319 (468)
.+++..+-+.. ++.+.|++-+-+. .......+..+++.+++.+..+++.....
T Consensus 166 ----------------Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~------ 222 (335)
T PF04007_consen 166 ----------------PDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE------ 222 (335)
T ss_pred ----------------CChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc------
Confidence 12222233332 2345677766553 11244567788999988887644443322
Q ss_pred cCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeE
Q 012212 320 AKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ 398 (468)
Q Consensus 320 ~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~ 398 (468)
.. ..+.++. ++.+. .-+.-.+++.++++ +|+=|| ....||...|+|.|-+ +-++-...-+.+.+. |+ .
T Consensus 223 -~~-~~~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l 291 (335)
T PF04007_consen 223 -DQ-RELFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--L 291 (335)
T ss_pred -ch-hhHHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--e
Confidence 11 1121221 24443 55555689988877 999877 7789999999999965 222222222345553 54 3
Q ss_pred eeccCCCccCHHHHHHHHHHHh
Q 012212 399 FFADENGIITRQEIQRKVLTLL 420 (468)
Q Consensus 399 l~~~~~~~~t~~~l~~ai~~~l 420 (468)
... -+.+++.+.+++.+
T Consensus 292 ~~~-----~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 292 YHS-----TDPDEIVEYVRKNL 308 (335)
T ss_pred Eec-----CCHHHHHHHHHHhh
Confidence 332 45777776554433
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.07 E-value=4.2e-07 Score=87.82 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeecc---C-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISHC---G-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~hG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.+++++.+|+++.+ ++..+++ +|.-. | ..++.||+++|+|+|+.+. ......+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC--
Confidence 57888889999654 5656655 65432 2 4789999999999999753 334444443 67766643
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~ 436 (468)
+.+++.++|.++++|++.+++..+-+.+.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45999999999999986555444444433
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.05 E-value=4.3e-07 Score=89.16 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=68.1
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee---ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|.+.+|+|+.+ ++..+++ +|. +-|. .++.||+++|+|+|+.... .....+.+ |.+...+
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~g----g~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVG----GIPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCC----CchhheeC--CceeecC---
Confidence 46788899998754 6655555 764 3344 4999999999999997653 33344443 4443322
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
.+.+++.+++.+++++..-++ .+.+..+..+.+.=|-...++++++..+...
T Consensus 318 ---~~~~~l~~~l~~~l~~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 318 ---PDVESIVRKLEEAISILRTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred ---CCHHHHHHHHHHHHhChhhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 368999999999998644221 1112222222223344555666665555443
No 71
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.02 E-value=1.4e-08 Score=98.32 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=85.8
Q ss_pred ccEEEEEecccccC-CHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCcccCCchhHHH---Hh---CCCceEEcccChH--
Q 012212 274 RSVVYVAFGSVAVL-SQQQFAELALGLESLQKP-FLWVIRQDFMNGSRAKFPDGFIE---RV---SNRGKIVEWAPQE-- 343 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~~~~p~~-- 343 (468)
++.++++.|+.... ..+.+..+++++.++..+ +.++..+. ......+.+ +. .+|+++.++.++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 45778888775432 456677888888765432 44444332 011122222 11 3678887766654
Q ss_pred -HHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 344 -KVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 344 -~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
.++..+ +++|+..| |.+.||++.|+|+|+++...+ +..+.+. |++..+. -+.++|.++|.++++|
T Consensus 272 ~~l~~~a--d~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~------~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 272 LLLLKNA--DLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVG------TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHcC--cEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecC------CCHHHHHHHHHHHhcC
Confidence 456445 55999999 778899999999999864322 2233443 6665543 2488999999999998
Q ss_pred hHHHHHH
Q 012212 423 DDIRSNS 429 (468)
Q Consensus 423 ~~~r~~a 429 (468)
+..+++.
T Consensus 338 ~~~~~~~ 344 (363)
T cd03786 338 EFAYSLM 344 (363)
T ss_pred chhhhcC
Confidence 7655443
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.98 E-value=3e-07 Score=87.84 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+++++.++.+. ..++..+++ +|.- |..+++.||+++|+|+|+.. -......+.+. +.|...+.+
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATD----CPGPREILEDG-ENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcC----CCChHHHhcCC-CceEEECCC---
Confidence 567888888765 567766665 6632 33578999999999999864 34666777774 788888763
Q ss_pred ccCHHHH---HHHHHHHhcChHHHHHHHH
Q 012212 406 IITRQEI---QRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 406 ~~t~~~l---~~ai~~~l~~~~~r~~a~~ 431 (468)
+.+.+ .+++.+++.+++.++++..
T Consensus 315 --~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 315 --DEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred --CHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 46676 6677777777775554444
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.97 E-value=7.7e-07 Score=85.69 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee----------ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhcee
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS----------HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGL 397 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~----------hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~ 397 (468)
++||++.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.. .....++.. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 57889999998654 5555655 666 34457999999999999987542 233455552 4787
Q ss_pred EeeccCCCccCHHHHHHHHHHHhcChHHHHH
Q 012212 398 QFFADENGIITRQEIQRKVLTLLKNDDIRSN 428 (468)
Q Consensus 398 ~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~ 428 (468)
.++. -+.+++.++|.++++|+..+++
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~ 333 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRRE 333 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHH
Confidence 7765 3689999999999999875443
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.96 E-value=1.9e-06 Score=82.99 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=59.2
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeec----cC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISH----CG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADEN 404 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~h----GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~ 404 (468)
.++|++.+|.+. ..++..+++ +|+= -| .+++.||+++|+|+|+.. -......+... +.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~--- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPP--- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCC---
Confidence 467888888543 557766666 5532 23 369999999999999873 34455666663 57888865
Q ss_pred CccCHHHHHHHHHHHh-cChHHHH
Q 012212 405 GIITRQEIQRKVLTLL-KNDDIRS 427 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l-~~~~~r~ 427 (468)
-+.+++.++|..++ .|++.++
T Consensus 315 --~~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 315 --GDAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred --CCHHHHHHHHHHHHhhCHHHHH
Confidence 46999999996555 4555443
No 75
>PLN02275 transferase, transferring glycosyl groups
Probab=98.95 E-value=1.4e-06 Score=84.61 Aligned_cols=128 Identities=11% Similarity=-0.083 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
|..+-|+.++..+-.|.-..+..++..|+++|| +|++++.+......+. ....+++++.++. ..... ...
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-------~~~~~v~v~r~~~-~~~~~-~~~ 71 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-------LNHPSIHIHLMVQ-PRLLQ-RLP 71 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-------hcCCcEEEEECCC-ccccc-ccc
Confidence 666677777777888999999999999999986 7999987654222121 1225688888875 21111 111
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc-c----cHHHHHHHhCCceEEEcc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV-G----SALEVAESMGIARAAVVP 140 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~-~----~~~~~A~~lgiP~v~~~~ 140 (468)
.....+.++..... .+..++..+... ..+||+|++.... . .+..++...++|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 72 RVLYALALLLKVAI-QFLMLLWFLCVK--IPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHhh--CCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 12222222221111 122222221111 1579999985322 2 233456678999987654
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.93 E-value=4.9e-07 Score=87.34 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=61.6
Q ss_pred CCCceEE-cccChH---HHhcCCCCCceee----c--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 331 SNRGKIV-EWAPQE---KVLGHSSVACFIS----H--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~-~~~p~~---~ll~~~~~~~~I~----h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
.+|+.+. .|+|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 5788888 558874 46655554 763 2 34578999999999999986543 3334454 7787776
Q ss_pred ccCCCccCHHHHHHHHHHHhcChHHHHHHH
Q 012212 401 ADENGIITRQEIQRKVLTLLKNDDIRSNSL 430 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~ 430 (468)
. -+.+++.+++.++++|++.+++..
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~ 342 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALR 342 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHH
Confidence 5 358999999999999876554333
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.93 E-value=5.1e-07 Score=87.50 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=65.4
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec----------cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhcee
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH----------CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGL 397 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h----------GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~ 397 (468)
.+++++.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 57788889998755 4656655 6642 2357999999999999987653 466666664 7888
Q ss_pred EeeccCCCccCHHHHHHHHHHHhcChHHHHHH
Q 012212 398 QFFADENGIITRQEIQRKVLTLLKNDDIRSNS 429 (468)
Q Consensus 398 ~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a 429 (468)
.++. -+.+++.++|.++++|++.+++.
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARM 343 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHH
Confidence 8875 46899999999999998755443
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.93 E-value=3.2e-07 Score=88.67 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=79.8
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEE-EEEcCCCCCCcccCCchhHHHH-----hCCCceEEcccCh--HHHhc
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFL-WVIRQDFMNGSRAKFPDGFIER-----VSNRGKIVEWAPQ--EKVLG 347 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~-----~~~nv~~~~~~p~--~~ll~ 347 (468)
.+++..|.........+..+++++.+....+- +.++.+ +..+.+.+. .+++|++.+|+++ ..+-.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g-------~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDG-------SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCC-------ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 45566676532233445667777766533332 233333 111222221 2578889999854 33221
Q ss_pred -CCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 348 -HSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 348 -~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
...++++|.. |-..++.||+++|+|+|+.-. .......++.. ..|..++. -+.++++++|.++++|
T Consensus 254 ~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 254 KIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-----GNIDEFVGKLNKVISG 324 (359)
T ss_pred HHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-----CCHHHHHHHHHHHHhC
Confidence 1233446643 335799999999999998741 22233445553 56877765 4799999999999999
Q ss_pred hHH
Q 012212 423 DDI 425 (468)
Q Consensus 423 ~~~ 425 (468)
++.
T Consensus 325 ~~~ 327 (359)
T PRK09922 325 EVK 327 (359)
T ss_pred ccc
Confidence 983
No 79
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.93 E-value=3.3e-07 Score=86.54 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=85.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCcccCCchhHHHHhCC--CceEEcccChHHHhcCCCC
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQKP-FLWVIRQDFMNGSRAKFPDGFIERVSN--RGKIVEWAPQEKVLGHSSV 351 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~--nv~~~~~~p~~~ll~~~~~ 351 (468)
++|.+--||....-...+-.++++..++..+ ..+.+.... .. +.+.+...+ .+.+.+ ...+++..+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF------KG-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC------cH-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 5899988997443334444444555433222 333333220 11 222222221 333332 33567866655
Q ss_pred CceeeccCchhHHHhhhcCCceecccc--ccchhhhHHHHH---HHhhceeEee-------------ccCCCccCHHHHH
Q 012212 352 ACFISHCGWNSTMEGLSMGVPFLCWPY--FSDQYQNRNYIC---EAWKIGLQFF-------------ADENGIITRQEIQ 413 (468)
Q Consensus 352 ~~~I~hGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~rv~---~~lG~g~~l~-------------~~~~~~~t~~~l~ 413 (468)
+|+-.|..|+ |+..+|+|+|+ ++ ..=|+.||+++. . .|+.-.+- -++ .|++.|.
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~---~t~~~la 310 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEF---VTVENLL 310 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhccc---CCHHHHH
Confidence 9999999999 99999999998 44 567889999988 5 36655552 244 8999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHH
Q 012212 414 RKVLTLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 414 ~ai~~~l~~~~~r~~a~~l~~~~ 436 (468)
+++.+ +...++++...++.+.+
T Consensus 311 ~~i~~-~~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 311 KAYKE-MDREKFFKKSKELREYL 332 (347)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHh
Confidence 99987 22233444444444433
No 80
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.92 E-value=1.5e-06 Score=83.86 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=61.5
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+++++.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+... ......+.. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~----~~~~~~i~~--~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDT----ITKEVDLTD--LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcC----Cchhhhhcc--CccEEeCC----
Confidence 567888887544 567766655 6643 446899999999999998744 334444444 45544433
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
-+.++++++|.++++|++.+++...
T Consensus 316 -~~~~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 316 -ESPEIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred -CCHHHHHHHHHHHHhCcchhhhhhh
Confidence 3579999999999999996665433
No 81
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.91 E-value=1.1e-06 Score=83.93 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=76.6
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHH--hCCCceEEcccChHH---HhcCCCCC
Q 012212 278 YVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIER--VSNRGKIVEWAPQEK---VLGHSSVA 352 (468)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~~~---ll~~~~~~ 352 (468)
.+..|... ...-...+++++.+.+.++++.-.+. ....+.....+. ..+++.+.+++++.+ +++.+++
T Consensus 174 i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~- 246 (335)
T cd03802 174 LLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA- 246 (335)
T ss_pred EEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE-
Confidence 34456652 23334567777777777766554432 111111111112 257889999999854 5655655
Q ss_pred ceee----ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 353 CFIS----HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 353 ~~I~----hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++. +-|. .++.||+++|+|+|+.. ...+...+... ..|...+ ..+++.++|.+++++.
T Consensus 247 -~v~ps~~~E~~~~~~lEAma~G~PvI~~~----~~~~~e~i~~~-~~g~l~~-------~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 247 -LLFPILWEEPFGLVMIEAMACGTPVIAFR----RGAVPEVVEDG-VTGFLVD-------SVEELAAAVARADRLD 309 (335)
T ss_pred -EEeCCcccCCcchHHHHHHhcCCCEEEeC----CCCchhheeCC-CcEEEeC-------CHHHHHHHHHHHhccH
Confidence 553 2343 58999999999999884 34445555542 3676653 2889999999987643
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.91 E-value=1.7e-06 Score=83.69 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=71.7
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCcccCCchhHHH--HhCCCceEEcccChHH---HhcCCC
Q 012212 278 YVAFGSVAVLSQQQFAELALGLESLQ--KPFLWVIRQDFMNGSRAKFPDGFIE--RVSNRGKIVEWAPQEK---VLGHSS 350 (468)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~~---ll~~~~ 350 (468)
++..|+.. ...-+..+++++.++. .+++++-.+. ....+...+.+ ...++|++.+++|+.+ ++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNAD----HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCC----CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 34567763 2233455667666554 3443333221 01111111211 2357889999999865 444444
Q ss_pred CCceeeccC----c-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 351 VACFISHCG----W-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 351 ~~~~I~hGG----~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
+ ++.+.- . +++.||+++|+|+|+....+ +...++. .|...+.. +.+.++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~~-------~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKVG-------DDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecCc-------hHHHHHHHHHHhCHHH
Confidence 4 655433 2 58999999999999875432 2222222 23333321 1299999999999865
Q ss_pred HHHH
Q 012212 426 RSNS 429 (468)
Q Consensus 426 r~~a 429 (468)
+++.
T Consensus 334 ~~~~ 337 (363)
T cd04955 334 VSAM 337 (363)
T ss_pred HHHH
Confidence 5443
No 83
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.88 E-value=1.2e-05 Score=82.99 Aligned_cols=92 Identities=9% Similarity=0.099 Sum_probs=61.1
Q ss_pred CCCceEEccc-Ch---HHHhcC-CC-CCceeec---cC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 331 SNRGKIVEWA-PQ---EKVLGH-SS-VACFISH---CG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~~~~-p~---~~ll~~-~~-~~~~I~h---GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
.++|++.++. +. ..++.+ ++ .++||.= =| .-++.||+++|+|+|+. +....+..|... .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeC
Confidence 4678877764 32 234432 22 2347642 23 35899999999999987 444566667663 5688887
Q ss_pred ccCCCccCHHHHHHHHHHHh----cChHHHHHHHHH
Q 012212 401 ADENGIITRQEIQRKVLTLL----KNDDIRSNSLKL 432 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l----~~~~~r~~a~~l 432 (468)
. -++++++++|.+++ +|++.+++..+-
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~ 723 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQKISQG 723 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6 46889999998875 688766654443
No 84
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.85 E-value=2.2e-06 Score=85.11 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=112.8
Q ss_pred cEEEEcCcccCChhhhccCCCceeec-cccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHH
Q 012212 217 NWIINNSVYELDSPACDLIPNILPIG-PLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAEL 295 (468)
Q Consensus 217 ~~~l~~~~~~le~~~~~~~p~v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~ 295 (468)
|.+++--+.|-++. ....-++.||| |+....... ...++..+.+.-.+++++|-+--||....=...+..+
T Consensus 363 D~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~ 434 (608)
T PRK01021 363 DLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQ 434 (608)
T ss_pred hhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45555544444444 45667899999 555442211 1122222333333456799999999754444455556
Q ss_pred HHHHH--hC--CCCEEEEEcCCCCCCcccCCchhHHHHhC-C---CceEEcccChHHHhcCCCCCceeeccCchhHHHhh
Q 012212 296 ALGLE--SL--QKPFLWVIRQDFMNGSRAKFPDGFIERVS-N---RGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGL 367 (468)
Q Consensus 296 ~~a~~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal 367 (468)
+++.. .+ +.++++..... ...+.+.+... . .+.++.--...++++.+++ .+.-.|.. +.|+.
T Consensus 435 l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaA 504 (608)
T PRK01021 435 VQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETA 504 (608)
T ss_pred HHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHH
Confidence 66665 33 23444432221 11122222221 1 2233311012567865655 88887765 68999
Q ss_pred hcCCceeccc-cccchhhhHHHHHH----H-------hhceeEeeccC-CCccCHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012212 368 SMGVPFLCWP-YFSDQYQNRNYICE----A-------WKIGLQFFADE-NGIITRQEIQRKVLTLLKNDDIRSNSLKLKE 434 (468)
Q Consensus 368 ~~GvP~v~~P-~~~DQ~~na~rv~~----~-------lG~g~~l~~~~-~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 434 (468)
.+|+|||++= ...=-..-|+++.+ . +|-.+....-. ....|++.|.+++ ++|.|+++|++.++=-+
T Consensus 505 L~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~ 583 (608)
T PRK01021 505 LNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACR 583 (608)
T ss_pred HhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 9999999752 22222233444433 0 01111111110 0238999999997 88888876666665555
Q ss_pred HHHHHhcCCCchHHHHHH
Q 012212 435 VARKSLLGGGSSFRNFES 452 (468)
Q Consensus 435 ~~~~~~~~~g~~~~~~~~ 452 (468)
++++...+|-++.+.+-.
T Consensus 584 ~lr~~Lg~~~~~~~~~~~ 601 (608)
T PRK01021 584 DLYQAMNESASTMKECLS 601 (608)
T ss_pred HHHHHhcCCCCCHHHHHH
Confidence 556654445554444433
No 85
>PLN02949 transferase, transferring glycosyl groups
Probab=98.83 E-value=1.2e-05 Score=79.83 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee---ccCch-hHHHhhhcCCceeccccccchhhhHHHHHH-Hhh-ceeEeec
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS---HCGWN-STMEGLSMGVPFLCWPYFSDQYQNRNYICE-AWK-IGLQFFA 401 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---hGG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-~lG-~g~~l~~ 401 (468)
.++|.+.+++|+.+ ++..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 57889999998765 5656655 763 23443 799999999999998543210 000111 001 23222
Q ss_pred cCCCccCHHHHHHHHHHHhcC-hHH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 402 DENGIITRQEIQRKVLTLLKN-DDI----RSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~-~~~----r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
-+.++++++|.+++++ ++. .+++++..++| |.....+++.+.+++..
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F--------S~e~~~~~~~~~i~~l~ 458 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANRF--------SEQRFNEDFKDAIRPIL 458 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------CHHHHHHHHHHHHHHHH
Confidence 2689999999999984 443 33343333332 44455556655555443
No 86
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.82 E-value=2.2e-06 Score=82.68 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeecc----CchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISHC----GWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~hG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+|+.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+++ .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC----
Confidence 467888887654 567866666 65532 257899999999999975 55556665555 3334443
Q ss_pred ccCHHHHHHHHHHHh-cChHHHHHHHHH
Q 012212 406 IITRQEIQRKVLTLL-KNDDIRSNSLKL 432 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l-~~~~~r~~a~~l 432 (468)
-+.+++.++|.+++ .++++++....-
T Consensus 311 -~~~~~~~~~i~~ll~~~~~~~~~~~~~ 337 (360)
T cd04951 311 -SDPEALANKIDEILKMSGEERDIIGAR 337 (360)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46889999999999 455565544443
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=5.7e-06 Score=77.74 Aligned_cols=321 Identities=15% Similarity=0.128 Sum_probs=184.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEE-CCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVN-TQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~-~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
.+.+-..+.|-++-..+|.++|.++ ++.|++-| ++...+.+.+... ..+...-+|-+ ...
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~-------~~v~h~YlP~D----------~~~ 113 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG-------DSVIHQYLPLD----------LPI 113 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC-------CCeEEEecCcC----------chH
Confidence 4445556789999999999999999 89999888 6666777666421 22333333321 111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC--cccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT--VGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGII 161 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (468)
. ++..++. .+||++|.--. ++....-++..|+|.+.+. +.+
T Consensus 114 ~-----------v~rFl~~-------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN-------------------aRL 156 (419)
T COG1519 114 A-----------VRRFLRK-------WRPKLLIIMETELWPNLINELKRRGIPLVLVN-------------------ARL 156 (419)
T ss_pred H-----------HHHHHHh-------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEe-------------------eee
Confidence 1 2233334 56888766544 3356667788999999875 222
Q ss_pred CCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh-hccccEEEEcCcccCChhhhccC-CCce
Q 012212 162 DPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA-VKISNWIINNSVYELDSPACDLI-PNIL 239 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~le~~~~~~~-p~v~ 239 (468)
+..++. .+..+....+. +..-++++..+.-+-+-. ..+. +++.
T Consensus 157 S~rS~~----------------------------------~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa~~v~ 201 (419)
T COG1519 157 SDRSFA----------------------------------RYAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGAKPVV 201 (419)
T ss_pred chhhhH----------------------------------HHHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCCcceE
Confidence 211110 01111111111 234466666665433322 2222 3467
Q ss_pred eeccccCCCCCCCCCCCCCCCCCchhhhhhcccC-ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc
Q 012212 240 PIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAI-RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGS 318 (468)
Q Consensus 240 ~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~ 318 (468)
..|.+=.+.... ...+.+...|-..-+. ++ +.+..+|. ...++.+..+..++.+.....+.++-+. +
T Consensus 202 v~GNlKfd~~~~------~~~~~~~~~~r~~l~~~r~-v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPR----H 269 (419)
T COG1519 202 VTGNLKFDIEPP------PQLAAELAALRRQLGGHRP-VWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPR----H 269 (419)
T ss_pred EecceeecCCCC------hhhHHHHHHHHHhcCCCCc-eEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecC----C
Confidence 777655543322 0122222222221122 43 44544553 3466777777777766543333333222 1
Q ss_pred ccCCchhHHHHh------------------CCCceEEcccCh-HHHhcCCCC----CceeeccCchhHHHhhhcCCceec
Q 012212 319 RAKFPDGFIERV------------------SNRGKIVEWAPQ-EKVLGHSSV----ACFISHCGWNSTMEGLSMGVPFLC 375 (468)
Q Consensus 319 ~~~~~~~~~~~~------------------~~nv~~~~~~p~-~~ll~~~~~----~~~I~hGG~~s~~eal~~GvP~v~ 375 (468)
.+..+ .+.+-. ..+|.+.|-+-- ..+++-+++ +-++-+||.| ..|.+++|+|+|.
T Consensus 270 pERf~-~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~ 347 (419)
T COG1519 270 PERFK-AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIF 347 (419)
T ss_pred hhhHH-HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEe
Confidence 22221 111111 124555554432 333333443 2356799999 8899999999999
Q ss_pred cccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 376 WPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 376 ~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
=|+..-|.+-++++.++ |.|+.++ +.+.+.+++..+++|++.|++..+-+..+-.
T Consensus 348 Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 348 GPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred CCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999997 9999984 3788999999999988877776666666555
No 88
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.79 E-value=1.5e-05 Score=76.66 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+.+ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhc---CCEEeCC----
Confidence 456666665443 567866665 776543 47999999999999986 44445555444 4555554
Q ss_pred ccCHHHHHHHHHHHhcChHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r 426 (468)
-+.+++.++|.++++|++.+
T Consensus 317 -~~~~~l~~~i~~l~~~~~~~ 336 (365)
T cd03807 317 -GDPEALAEAIEALLADPALR 336 (365)
T ss_pred -CCHHHHHHHHHHHHhChHHH
Confidence 36899999999999987643
No 89
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.75 E-value=1.4e-05 Score=78.11 Aligned_cols=141 Identities=11% Similarity=0.176 Sum_probs=81.2
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCcccCCchhHHHH---h---CCCceEE-cccChHH--
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESL--QKPFLWVIRQDFMNGSRAKFPDGFIER---V---SNRGKIV-EWAPQEK-- 344 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~---~---~~nv~~~-~~~p~~~-- 344 (468)
.+++..|+.. ..+-+..+++++..+ +.+++++.++. ....+.+.+.+. . .+++... +++|+.+
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAP----DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCC----CcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 4555567753 223345566666554 34555444433 111111222211 1 1345554 6787654
Q ss_pred -HhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC-CCccCHHHHHHHHHH
Q 012212 345 -VLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE-NGIITRQEIQRKVLT 418 (468)
Q Consensus 345 -ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~-~~~~t~~~l~~ai~~ 418 (468)
++..+++ +|.= |...++.||+++|+|+|+.. .......++.. +.|..++... +..-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHH
Confidence 5656655 7752 33457899999999999874 34566666664 6788887643 000112899999999
Q ss_pred HhcChHHHHHH
Q 012212 419 LLKNDDIRSNS 429 (468)
Q Consensus 419 ~l~~~~~r~~a 429 (468)
+++|++.+++.
T Consensus 349 l~~~~~~~~~~ 359 (388)
T TIGR02149 349 LLADPELAKKM 359 (388)
T ss_pred HHhCHHHHHHH
Confidence 99988755443
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.74 E-value=1.4e-06 Score=83.92 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=82.0
Q ss_pred ccEEEEEeccc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccCh---HHH
Q 012212 274 RSVVYVAFGSV---AVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQ---EKV 345 (468)
Q Consensus 274 ~~vv~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~---~~l 345 (468)
++.|++++=.. .....+.+..+++++.+.+.+++++...... ....+...+.+.. .+|+++.+-+++ ..+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC--CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 35888888543 2345678999999998877666665533200 0000111122211 467888876655 457
Q ss_pred hcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeE-eeccCCCccCHHHHHHHHHHHhcChH
Q 012212 346 LGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ-FFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 346 l~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~-l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
+.++++ +|+.++.+- .||.+.|||+|.+- +.+ .- .+. |..+. +. .++++|.+++.+++ +++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~-~~~-g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KG-RLR-ADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hh-hhh-cCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 777766 998875555 99999999999874 211 11 122 43332 32 57899999999955 444
Q ss_pred HHH
Q 012212 425 IRS 427 (468)
Q Consensus 425 ~r~ 427 (468)
+++
T Consensus 341 ~~~ 343 (365)
T TIGR03568 341 FKK 343 (365)
T ss_pred HHH
Confidence 433
No 91
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.73 E-value=1.3e-05 Score=78.70 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCCceEEcccCh-HHHhcCCCCCcee--ec--cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFI--SH--CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADEN 404 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I--~h--GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~ 404 (468)
.++|++.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .... |.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC----
Confidence 467888899986 457766666 66 32 454 47999999999999987543321 1233 6677664
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
-+.++++++|.++++|++.+++..+
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~ 371 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQ 371 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2689999999999999875554333
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.71 E-value=4.5e-06 Score=80.51 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=63.4
Q ss_pred hCCCceEEcccChHH---HhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 330 VSNRGKIVEWAPQEK---VLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 330 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
..+++++.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..++.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 367888889998864 5655655 5532 3356899999999999986542 22222322 3445544
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEV 435 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~ 435 (468)
-+.+++.++|.++++|++.+++..+-+..
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46899999999999999977766655543
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=4.1e-05 Score=79.11 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=64.3
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceee---ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.++|++.+|.++ ..++..+++ +|. +.|. +++.||+++|+|+|+... ......+++. ..|+.++...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCC--
Confidence 577888899876 557766655 765 5564 799999999999999753 3455666663 4688887654
Q ss_pred ccCHHHHHHHHHHHh----cChHHHHHHHHHH
Q 012212 406 IITRQEIQRKVLTLL----KNDDIRSNSLKLK 433 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l----~~~~~r~~a~~l~ 433 (468)
.+.+++.+++.+++ +++.+++++++..
T Consensus 644 -~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 644 -VTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -CChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 55666666665555 4666777665544
No 94
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=0.00015 Score=70.49 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=60.7
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceee--c--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFIS--H--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~--h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+++++.++..+ ..++..+++ +|. + |-..++.||+++|+|+|+... ..+...+++. ..|..++.
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~---- 322 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP---- 322 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC----
Confidence 345666665543 567866666 763 2 445799999999999999754 4456666663 56877765
Q ss_pred ccCHHHHHHHHHHHhcChHHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
-+.++++++|.++++|++.++
T Consensus 323 -~d~~~la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 323 -GDAVALARALQPYVSDPAARR 343 (374)
T ss_pred -CCHHHHHHHHHHHHhCHHHHH
Confidence 368999999999999887544
No 95
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.68 E-value=2.7e-05 Score=76.81 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec---cCc-hhHHHhhhcCCceeccccccchhhhHHHHH---HHhhceeEee
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYIC---EAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~---~~lG~g~~l~ 400 (468)
.++|++.+++|+.+ +|..+++ +|+- -|. -++.||+++|+|+|+.-..+. ....++ .. +.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 57899999998765 6666655 6642 232 488999999999998643221 112222 22 466653
Q ss_pred ccCCCccCHHHHHHHHHHHhcChH
Q 012212 401 ADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
-+.++++++|.+++++++
T Consensus 377 ------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred ------CCHHHHHHHHHHHHhCCH
Confidence 268999999999998654
No 96
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.65 E-value=3.9e-05 Score=75.23 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=49.5
Q ss_pred cccChHHHhcCCCCCceeecc----CchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHH
Q 012212 338 EWAPQEKVLGHSSVACFISHC----GWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQ 413 (468)
Q Consensus 338 ~~~p~~~ll~~~~~~~~I~hG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~ 413 (468)
++....+++...++ ||.-+ =..++.||+++|+|+|+.- ...+ ..+... +-|... -+.+++.
T Consensus 290 G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~----~~~~-~~v~~~-~ng~~~-------~~~~~~a 354 (462)
T PLN02846 290 GRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCAN----HPSN-EFFKQF-PNCRTY-------DDGKGFV 354 (462)
T ss_pred CCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEec----CCCc-ceeecC-CceEec-------CCHHHHH
Confidence 66666778866655 88774 3478999999999999984 3322 333332 445444 2578999
Q ss_pred HHHHHHhcCh
Q 012212 414 RKVLTLLKND 423 (468)
Q Consensus 414 ~ai~~~l~~~ 423 (468)
+++.++|.++
T Consensus 355 ~ai~~~l~~~ 364 (462)
T PLN02846 355 RATLKALAEE 364 (462)
T ss_pred HHHHHHHccC
Confidence 9999999854
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.63 E-value=6.5e-05 Score=73.04 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCceEEccc--ChH---HHhcCCCCCceeecc---C-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeec
Q 012212 331 SNRGKIVEWA--PQE---KVLGHSSVACFISHC---G-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 331 ~~nv~~~~~~--p~~---~ll~~~~~~~~I~hG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~ 401 (468)
.+++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+... ......+... ..|+..+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhcccC-CceEEeC-
Confidence 4577787776 443 35655554 87543 2 3599999999999998753 3334445553 5576543
Q ss_pred cCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
+.+.+..+|.++++|++.+++..+-+.+... +.=+-...++++++.++
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~---~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHVR---ENFLITRHLKDYLYLIS 370 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHH
Confidence 3567788999999998866554443333211 12244555566655544
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.59 E-value=1.7e-05 Score=75.40 Aligned_cols=207 Identities=15% Similarity=0.138 Sum_probs=113.4
Q ss_pred ccEEEEcCcccCChhhhccCCCceeec-cccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHH
Q 012212 216 SNWIINNSVYELDSPACDLIPNILPIG-PLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAE 294 (468)
Q Consensus 216 ~~~~l~~~~~~le~~~~~~~p~v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~ 294 (468)
.|.+++--.++-++. ....-++.||| |+...-... ..+....+.+ -.+++++|.+--||....=...+..
T Consensus 134 ~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~ 204 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPI 204 (373)
T ss_pred HhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 355555555444444 45556899999 555443222 1122222333 2345679999999974433334444
Q ss_pred HHHHHH---hC--CCCEEEEEcCCCCCCcccCCchhHH---HHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHH
Q 012212 295 LALGLE---SL--QKPFLWVIRQDFMNGSRAKFPDGFI---ERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTME 365 (468)
Q Consensus 295 ~~~a~~---~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~e 365 (468)
++++.+ +. +.++++..... ...+-+. .....++.+. ..-.-.+++..+++ .+.-.|-- +.|
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGTa-TLE 274 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPE-------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGTA-TLE 274 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCH-------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCHH-HHH
Confidence 555543 22 23444433322 1111111 1123333433 22233556765655 66666653 789
Q ss_pred hhhcCCceeccc-cccchhhhHHHHHHHhhceeEee-------------ccCCCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 366 GLSMGVPFLCWP-YFSDQYQNRNYICEAWKIGLQFF-------------ADENGIITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 366 al~~GvP~v~~P-~~~DQ~~na~rv~~~lG~g~~l~-------------~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
+..+|+|||++= ...=-...|+++.+ ... +.+. -++ .|++.|.+++.++|+|++.++..+.
T Consensus 275 ~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~---~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 275 AALLGVPMVVAYKVSPLTYFIAKRLVK-VKY-ISLPNIIAGREVVPELIQED---ATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred HHHhCCCEEEEEcCcHHHHHHHHHhhc-CCE-eechhhhcCCCcchhhhccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999998763 22223334444433 121 1111 133 8999999999999999988888777
Q ss_pred HHHHHHHHhcCCCch
Q 012212 432 LKEVARKSLLGGGSS 446 (468)
Q Consensus 432 l~~~~~~~~~~~g~~ 446 (468)
..+.+++....+.++
T Consensus 350 ~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 350 LFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHhhhhccCC
Confidence 777777765555554
No 99
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.53 E-value=1e-05 Score=77.93 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=89.9
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHH---HhcCCCCCce
Q 012212 278 YVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEK---VLGHSSVACF 354 (468)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---ll~~~~~~~~ 354 (468)
++..|+.. ...-+..+++++..++.+++++-.+. ..+.+.+...+||.+.+++|+.+ ++..+++ +
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~ 265 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA--F 265 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--E
Confidence 44456653 33446677888887776665554432 12333334578999999999854 6766665 6
Q ss_pred ee--ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh-HHHHHHH
Q 012212 355 IS--HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND-DIRSNSL 430 (468)
Q Consensus 355 I~--hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~-~~r~~a~ 430 (468)
|. .-|. .++.||+++|+|+|+.... .....+++. +.|+.++. -+.++++++|.++++|+ ..+++++
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~ 335 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIR 335 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHH
Confidence 63 3344 4678999999999998543 344445553 67888876 35888999999999988 4555554
Q ss_pred HHHHH
Q 012212 431 KLKEV 435 (468)
Q Consensus 431 ~l~~~ 435 (468)
+.+++
T Consensus 336 ~~~~~ 340 (351)
T cd03804 336 AHAER 340 (351)
T ss_pred HHHHh
Confidence 44433
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.49 E-value=7.3e-07 Score=84.93 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=79.2
Q ss_pred cCccEEEEEecccccCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhC--CCceEEcccCh--
Q 012212 272 AIRSVVYVAFGSVAVLS-Q---QQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVS--NRGKIVEWAPQ-- 342 (468)
Q Consensus 272 ~~~~vv~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~~p~-- 342 (468)
.+++.+++++=...... + ..+..+++++.+. +..++|.+.+. ......+.+... +|++++.-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~------p~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN------PRGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-------HHHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC------chHHHHHHHHhcccCCEEEECCCCHHH
Confidence 45668999985543333 3 4555666666665 56677777633 011122222221 58999866655
Q ss_pred -HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHH-hhceeEeeccCCCccCHHHHHHHHHHHh
Q 012212 343 -EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEA-WKIGLQFFADENGIITRQEIQRKVLTLL 420 (468)
Q Consensus 343 -~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-lG~g~~l~~~~~~~~t~~~l~~ai~~~l 420 (468)
..++.++++ +|+..| |-.-||.+.|+|+|.+ +++..|-+-. .|..+.++ .+.++|.++|++++
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv~------~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLVG------TDPEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEET------SSHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEeC------CCHHHHHHHHHHHH
Confidence 557877776 999999 4444999999999999 4444443321 15554432 68999999999999
Q ss_pred cChHHHHHHHH
Q 012212 421 KNDDIRSNSLK 431 (468)
Q Consensus 421 ~~~~~r~~a~~ 431 (468)
++.+..++...
T Consensus 317 ~~~~~~~~~~~ 327 (346)
T PF02350_consen 317 SDKDFYRKLKN 327 (346)
T ss_dssp H-HHHHHHHHC
T ss_pred hChHHHHhhcc
Confidence 87555554433
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.48 E-value=8.3e-07 Score=70.14 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=75.3
Q ss_pred cEEEEEecccccC---CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCcccCCchhHHHHh-CCCceE--EcccCh-HHHh
Q 012212 275 SVVYVAFGSVAVL---SQQQFAELALGLESLQK-PFLWVIRQDFMNGSRAKFPDGFIERV-SNRGKI--VEWAPQ-EKVL 346 (468)
Q Consensus 275 ~vv~vs~Gs~~~~---~~~~~~~~~~a~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~--~~~~p~-~~ll 346 (468)
..+|||-||.... ..-.-.+..+.+.+.|. +.++..+.+ + ...++...... .+...+ .+|-|- .+.+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg----~-~~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRG----Q-PFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCC----c-cCCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 3799999997310 01112235556677776 566667665 1 11222221111 222333 377776 6667
Q ss_pred cCCCCCceeeccCchhHHHhhhcCCceecccc----ccchhhhHHHHHHHhhceeEee
Q 012212 347 GHSSVACFISHCGWNSTMEGLSMGVPFLCWPY----FSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 347 ~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
+.+++ ||+|+|.||++|.|..|+|.|+++- ---|-.-|..+++. |-=..-.
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ 133 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCT 133 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEee
Confidence 55655 9999999999999999999999984 46788889888883 6654443
No 102
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=7.6e-06 Score=76.27 Aligned_cols=140 Identities=13% Similarity=0.186 Sum_probs=89.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEE---cccChHHHh
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL---QKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIV---EWAPQEKVL 346 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~---~~~p~~~ll 346 (468)
..|++|+=...... +.++.+++++.++ ...+.+++.... ...+.+-...+. .+|+++. +|.++..++
T Consensus 205 ~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~----~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~ 279 (383)
T COG0381 205 KYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHP----RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLM 279 (383)
T ss_pred cEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCC----ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHH
Confidence 48888865544433 5566666655332 223344444330 001111111233 3458876 667788899
Q ss_pred cCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 347 GHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 347 ~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
.++.+ ++|-.|.. --||-..|+|++++=...|++. +++ + |.-+.+. .+.+.|.+++.+++++++..
T Consensus 280 ~~a~~--iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~ 345 (383)
T COG0381 280 KNAFL--ILTDSGGI-QEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVG------TDEENILDAATELLEDEEFY 345 (383)
T ss_pred HhceE--EEecCCch-hhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeC------ccHHHHHHHHHHHhhChHHH
Confidence 88866 88887753 6789999999999988888887 333 3 6655554 56799999999999999877
Q ss_pred HHHHHHH
Q 012212 427 SNSLKLK 433 (468)
Q Consensus 427 ~~a~~l~ 433 (468)
++.....
T Consensus 346 ~~m~~~~ 352 (383)
T COG0381 346 ERMSNAK 352 (383)
T ss_pred HHHhccc
Confidence 7554443
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.44 E-value=0.0002 Score=69.61 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=52.2
Q ss_pred CCCceEEcccChHH---HhcCCCCCcee------eccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFI------SHCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I------~hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
.+||++.+++|+.+ .+.+.++.++- +.++. +.+.|++++|+|+|+.++ ...++. +-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh--cCcEEEe
Confidence 47999999999766 56666662221 22343 469999999999998753 222333 3233333
Q ss_pred ccCCCccCHHHHHHHHHHHhcCh
Q 012212 401 ADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
. -+.+++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 2 36999999999977544
No 104
>PLN00142 sucrose synthase
Probab=98.44 E-value=0.0003 Score=73.14 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCCceEEcc----cChHHHhcC-C-CCCceeec---cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 331 SNRGKIVEW----APQEKVLGH-S-SVACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~~~----~p~~~ll~~-~-~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
.++|++.+. .+..++... . ..++||.- -|. .++.||+++|+|+|+.. .......|+.. .-|..++
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~ 715 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHID 715 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeC
Confidence 466666543 333444431 1 12446653 454 48999999999999874 44566666663 4688887
Q ss_pred ccCCCccCHHHHHHHHHH----HhcChHHHHHHHHH
Q 012212 401 ADENGIITRQEIQRKVLT----LLKNDDIRSNSLKL 432 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~----~l~~~~~r~~a~~l 432 (468)
. -+.++++++|.+ +++|++.+++..+-
T Consensus 716 P-----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~ 746 (815)
T PLN00142 716 P-----YHGDEAANKIADFFEKCKEDPSYWNKISDA 746 (815)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6 357788888765 45788866654443
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.41 E-value=0.00019 Score=71.88 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=64.6
Q ss_pred hCCCceEE-cccCh--HHHhcCCCCCceeec---cCc-hhHHHhhhcCCceecccccc--chhhhHHHHHHHhhceeEee
Q 012212 330 VSNRGKIV-EWAPQ--EKVLGHSSVACFISH---CGW-NSTMEGLSMGVPFLCWPYFS--DQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 330 ~~~nv~~~-~~~p~--~~ll~~~~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~g~~l~ 400 (468)
.+.++.+. +|-.. ..+++.+++ +|.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+. +.|+.++
T Consensus 335 ~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~ 411 (466)
T PRK00654 335 YPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD 411 (466)
T ss_pred CCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC
Confidence 35566554 66322 246655555 7753 344 48899999999999874421 211111000122 5788887
Q ss_pred ccCCCccCHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 401 ADENGIITRQEIQRKVLTLLK---NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~---~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
. -+++++.++|.++++ |++.+ +++++.... ..=+-.+.+++.++..++.
T Consensus 412 ~-----~d~~~la~~i~~~l~~~~~~~~~---~~~~~~~~~---~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 412 D-----FNAEDLLRALRRALELYRQPPLW---RALQRQAMA---QDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCHHHH---HHHHHHHhc---cCCChHHHHHHHHHHHHHH
Confidence 6 468999999999886 43322 233332221 1223455556655555443
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=0.00014 Score=67.91 Aligned_cols=348 Identities=15% Similarity=0.105 Sum_probs=171.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
|+||.++..-..|++.- ..|.++|.++=-+|.|+.-.. +..++-|. ..+ ++..+.....+.+
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG--~~m~aeG~------------~sl---~~~~elsvmGf~E 62 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGG--EKMEAEGL------------ESL---FDMEELSVMGFVE 62 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEecc--HHHHhccC------------ccc---cCHHHHHHhhHHH
Confidence 46888888777788775 367778876633777777654 33443221 100 1111102223344
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEE-ecCCcccHHHHHH---HhC--CceEEEcccchHHHHHHhhhhhHhh
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVI-ADVTVGSALEVAE---SMG--IARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi-~D~~~~~~~~~A~---~lg--iP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
.+..+.+... ..+++++.+.. .+||++| +|.-.+ ...+|+ ..| +|.|.+.....
T Consensus 63 VL~~lp~llk-~~~~~~~~i~~----~kpD~~i~IDsPdF-nl~vak~lrk~~p~i~iihYV~PsV-------------- 122 (381)
T COG0763 63 VLGRLPRLLK-IRRELVRYILA----NKPDVLILIDSPDF-NLRVAKKLRKAGPKIKIIHYVSPSV-------------- 122 (381)
T ss_pred HHHHHHHHHH-HHHHHHHHHHh----cCCCEEEEeCCCCC-chHHHHHHHHhCCCCCeEEEECcce--------------
Confidence 4444333222 35566666555 5698865 565444 444554 446 99887653111
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCCC
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIPN 237 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~ 237 (468)
|.|...+. ... ....|.++.--.++-++. ....-.
T Consensus 123 --------------------------------WAWr~~Ra--~~i----------~~~~D~lLailPFE~~~y-~k~g~~ 157 (381)
T COG0763 123 --------------------------------WAWRPKRA--VKI----------AKYVDHLLAILPFEPAFY-DKFGLP 157 (381)
T ss_pred --------------------------------eeechhhH--HHH----------HHHhhHeeeecCCCHHHH-HhcCCC
Confidence 11111110 011 113345554444333333 233334
Q ss_pred ceeec-cccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEc
Q 012212 238 ILPIG-PLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIR 311 (468)
Q Consensus 238 v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~ 311 (468)
+.||| |+....+.. ...+.+.+-+....+++++.+-.||....-...+..+.++.+.+ +.++++-+.
T Consensus 158 ~~yVGHpl~d~i~~~-------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~ 230 (381)
T COG0763 158 CTYVGHPLADEIPLL-------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV 230 (381)
T ss_pred eEEeCChhhhhcccc-------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 89999 444433221 12333444454555667999999997543333444444444332 345555544
Q ss_pred CCCCCCcccCCchhHHHHh-CCCc-eEEcccC-h--HHHhcCCCCCceeeccCchhHHHhhhcCCceecccc-ccchhhh
Q 012212 312 QDFMNGSRAKFPDGFIERV-SNRG-KIVEWAP-Q--EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY-FSDQYQN 385 (468)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~nv-~~~~~~p-~--~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~-~~DQ~~n 385 (468)
.. .-+.+.+.. ..+. ...-++. + .+.+..++ +.+.-+|-. +.|+..+|+|||+.=- ..=-..-
T Consensus 231 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD--~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~i 299 (381)
T COG0763 231 NA--------KYRRIIEEALKWEVAGLSLILIDGEKRKAFAAAD--AALAASGTA-TLEAALAGTPMVVAYKVKPITYFI 299 (381)
T ss_pred cH--------HHHHHHHHHhhccccCceEEecCchHHHHHHHhh--HHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHH
Confidence 33 111122111 1121 1222222 1 22453344 477777765 6899999999987621 1111222
Q ss_pred HHHHHHHhhc--------eeEe-eccCCCccCHHHHHHHHHHHhcChH----HHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 012212 386 RNYICEAWKI--------GLQF-FADENGIITRQEIQRKVLTLLKNDD----IRSNSLKLKEVARKSLLGGGSSFRNFES 452 (468)
Q Consensus 386 a~rv~~~lG~--------g~~l-~~~~~~~~t~~~l~~ai~~~l~~~~----~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 452 (468)
|.+..+ +.. |..+ +.-=...++++.|.+++..++.|+. +++....|.+.++. ++++..+.+-
T Consensus 300 ak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~ 374 (381)
T COG0763 300 AKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQA 374 (381)
T ss_pred HHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHH
Confidence 232221 110 1000 0000123889999999999999983 44455555554443 5555666665
Q ss_pred HHHHH
Q 012212 453 FISDI 457 (468)
Q Consensus 453 ~~~~~ 457 (468)
+++.+
T Consensus 375 vl~~~ 379 (381)
T COG0763 375 VLELL 379 (381)
T ss_pred HHHHh
Confidence 55544
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.28 E-value=0.00056 Score=68.77 Aligned_cols=87 Identities=5% Similarity=0.037 Sum_probs=56.1
Q ss_pred hCCCceEEcccChH---HHhcCCCCCceeec---cCc-hhHHHhhhcCCceeccccccchhhhHHHHHH------Hhhce
Q 012212 330 VSNRGKIVEWAPQE---KVLGHSSVACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICE------AWKIG 396 (468)
Q Consensus 330 ~~~nv~~~~~~p~~---~ll~~~~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~------~lG~g 396 (468)
.+.++.+....+.. .+++.+++ +|.- -|. .+.+||+++|+|+|+....+ ....+.. . +.|
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~-~~G 416 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAES-GTG 416 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCC-Cce
Confidence 35677776555553 36655555 7743 244 47899999999999875422 2222222 1 578
Q ss_pred eEeeccCCCccCHHHHHHHHHHHhc----ChHHHHH
Q 012212 397 LQFFADENGIITRQEIQRKVLTLLK----NDDIRSN 428 (468)
Q Consensus 397 ~~l~~~~~~~~t~~~l~~ai~~~l~----~~~~r~~ 428 (468)
+.++. -+++++.++|.+++. |++.+++
T Consensus 417 ~l~~~-----~d~~~la~~i~~~l~~~~~~~~~~~~ 447 (473)
T TIGR02095 417 FLFEE-----YDPGALLAALSRALRLYRQDPSLWEA 447 (473)
T ss_pred EEeCC-----CCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77765 468999999999987 6654443
No 108
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.17 E-value=0.0089 Score=58.55 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=100.5
Q ss_pred hhhhcccCccEEEEEecccccC------C-H---HHHHHHHHHHHhCCCCEEEEEcCCCCCCcccC----CchhHHHHh-
Q 012212 266 SWLDEQAIRSVVYVAFGSVAVL------S-Q---QQFAELALGLESLQKPFLWVIRQDFMNGSRAK----FPDGFIERV- 330 (468)
Q Consensus 266 ~~l~~~~~~~vv~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~- 330 (468)
.|+.....+++|.|+....... . . +.+..+++.+.+.++++++..-.. +.+.... .-..+.+..
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~-~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCT-GIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEeccc-CccCCCCchHHHHHHHHHhcc
Confidence 4444333455788876543211 1 2 334455555555688877664321 0000000 012222333
Q ss_pred -CCCceEE--cccChH--HHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeE-eeccCC
Q 012212 331 -SNRGKIV--EWAPQE--KVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ-FFADEN 404 (468)
Q Consensus 331 -~~nv~~~--~~~p~~--~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~-l~~~~~ 404 (468)
+.++++. ++-|.+ .+++++++ +|..==+ ++.-|+.+|||.+.+++ | +-...-++. +|..-. ++.++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~- 376 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRH- 376 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhh-
Confidence 2344543 333443 67866654 8865333 45668999999999988 3 333444466 687755 66666
Q ss_pred CccCHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLKNDD-IRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~-~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
++.++|.+.+.++++|.+ ++++.++.-++++. .+..-+.+++..+
T Consensus 377 --l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 377 --LLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 899999999999999866 77777766666666 3334445555544
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.16 E-value=0.00053 Score=68.88 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCceEEcccChHHHhcCCCCCceee---ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc--CC
Q 012212 331 SNRGKIVEWAPQEKVLGHSSVACFIS---HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD--EN 404 (468)
Q Consensus 331 ~~nv~~~~~~p~~~ll~~~~~~~~I~---hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~--~~ 404 (468)
.++|.+.++.+...++..+++ +|. .-| ..++.||+++|+|+|+.... ..+...++.. .-|..++.. .+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcccc
Confidence 466788898888889977766 775 334 46899999999999997432 1345555553 468777631 10
Q ss_pred CccC-HHHHHHHHHHHhcChH---HHHHHHHHHHHH
Q 012212 405 GIIT-RQEIQRKVLTLLKNDD---IRSNSLKLKEVA 436 (468)
Q Consensus 405 ~~~t-~~~l~~ai~~~l~~~~---~r~~a~~l~~~~ 436 (468)
..-+ .++++++|.++++++. +.+++.+.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 0012 7889999999996443 344444444443
No 110
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.15 E-value=6.5e-05 Score=73.02 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=86.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh------CCCceEEcccChHHHh
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV------SNRGKIVEWAPQEKVL 346 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~nv~~~~~~p~~~ll 346 (468)
++.++|.+|.+.....++.++...+-+...+.-.+|...... .-...+.+.. ++++.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------SGEARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------THHHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 345999999999999999999999999999998888876541 1112222221 5778888888875533
Q ss_pred c-CCCCCcee---eccCchhHHHhhhcCCceecccc-ccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 347 G-HSSVACFI---SHCGWNSTMEGLSMGVPFLCWPY-FSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 347 ~-~~~~~~~I---~hGG~~s~~eal~~GvP~v~~P~-~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
. +..+|+++ ..+|.+|++|||++|||+|.+|- ..=.+..|..+.. +|+.-.+-. +.++-.+..-++-+
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~La~ 429 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRLAT 429 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHHHH
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHHhC
Confidence 2 23334454 56788999999999999999983 3344455555666 588765543 34444444447777
Q ss_pred ChHHHHHHH-HHHHHHHH
Q 012212 422 NDDIRSNSL-KLKEVARK 438 (468)
Q Consensus 422 ~~~~r~~a~-~l~~~~~~ 438 (468)
|++++++.+ +|.+++.+
T Consensus 430 D~~~l~~lR~~Lr~~~~~ 447 (468)
T PF13844_consen 430 DPERLRALRAKLRDRRSK 447 (468)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 888655443 34444433
No 111
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.12 E-value=0.001 Score=67.08 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=56.4
Q ss_pred CCCceEEcccChH---HHhcCCCCCceeec---cCc-hhHHHhhhcCCceecccccc--chhhhHHHHHHHhhceeEeec
Q 012212 331 SNRGKIVEWAPQE---KVLGHSSVACFISH---CGW-NSTMEGLSMGVPFLCWPYFS--DQYQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 331 ~~nv~~~~~~p~~---~ll~~~~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~g~~l~~ 401 (468)
++|+++....++. .+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+.....+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 5777766333443 35655554 7743 122 47899999999999875422 211111101122 47888876
Q ss_pred cCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~ 436 (468)
.+.+++.++|.+++++..-++...+++++.
T Consensus 427 -----~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~ 456 (476)
T cd03791 427 -----YNADALLAALRRALALYRDPEAWRKLQRNA 456 (476)
T ss_pred -----CCHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 468999999999885322233333444433
No 112
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.03 E-value=0.00019 Score=70.55 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=63.0
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeec---------cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhcee
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISH---------CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGL 397 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~h---------GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~ 397 (468)
.++|.+.+|+|+.+ ++..+++ +|.- -|. .++.||+++|+|+|+... ......++.. ..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 57788889999865 5655555 7752 244 678999999999998743 3344555553 5788
Q ss_pred EeeccCCCccCHHHHHHHHHHHhc-ChHHHHH
Q 012212 398 QFFADENGIITRQEIQRKVLTLLK-NDDIRSN 428 (468)
Q Consensus 398 ~l~~~~~~~~t~~~l~~ai~~~l~-~~~~r~~ 428 (468)
.++. -+.++++++|.++++ |++.+++
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~ 377 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAP 377 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHH
Confidence 7765 469999999999999 8874443
No 113
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.02 E-value=0.0032 Score=63.88 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=52.1
Q ss_pred CceEEcccChH-HHhcCCCCCceeec---cC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCcc
Q 012212 333 RGKIVEWAPQE-KVLGHSSVACFISH---CG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGII 407 (468)
Q Consensus 333 nv~~~~~~p~~-~ll~~~~~~~~I~h---GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~ 407 (468)
++.+.++.++. .+++..++ ||.- =| ..++.||+++|+|+|+....+.. . +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Eee--cCCeEec------C
Confidence 35555777654 47855555 8763 23 47899999999999998654322 1 222 3222222 2
Q ss_pred CHHHHHHHHHHHhcChHHH
Q 012212 408 TRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~~r 426 (468)
+.+++.++|.++|.|+..+
T Consensus 667 D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CHHHHHHHHHHHHhCchhh
Confidence 5899999999999988643
No 114
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.01 E-value=0.0089 Score=60.14 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CCCceEEcccChHHHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHH----h-hceeEeec
Q 012212 331 SNRGKIVEWAPQEKVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEA----W-KIGLQFFA 401 (468)
Q Consensus 331 ~~nv~~~~~~p~~~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~----l-G~g~~l~~ 401 (468)
.+||++.+.....+++...++ +|.- |-..++.||+++|+|+|+. |.......+.+. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 578888886666778865555 6644 3347899999999999986 444444455441 1 26777765
Q ss_pred cCCCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
-+.++++++|.++++|++.+++..+
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~ 451 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGE 451 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4699999999999999886655443
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.00 E-value=0.00054 Score=66.54 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceeec--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCcc
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFISH--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGII 407 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~ 407 (468)
++++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....++.. ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 567777787766 557877766333343 33468999999999999874321 244555553 67888865 4
Q ss_pred CHHHHHHHHHHHhcChHHH
Q 012212 408 TRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~~r 426 (468)
+.++++++|.++++|++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~ 349 (372)
T cd04949 331 DIEALAEAIIELLNDPKLL 349 (372)
T ss_pred cHHHHHHHHHHHHcCHHHH
Confidence 6999999999999998633
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.97 E-value=0.00027 Score=69.49 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeeccC----chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|.+.+|+++.+ ++...+++++|...- ..+++||+++|+|+|+. |.......+.+. +.|..++..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~-~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNG-GNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCC-CcEEEeCCC-
Confidence 35678889999865 444455566775443 46899999999999987 444566667663 488887653
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSN 428 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~ 428 (468)
-+.++++++|.++++|++.+++
T Consensus 362 ---~~~~~la~~I~~ll~~~~~~~~ 383 (407)
T cd04946 362 ---PTPNELVSSLSKFIDNEEEYQT 383 (407)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHH
Confidence 4789999999999998875543
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.96 E-value=0.0001 Score=62.90 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCCceEEcccCh---HHHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQ---EKVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~---~~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.+++++.+++++ ..++..+++ +|+. |...++.||+++|+|+|+. +...+...+... +.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 578899999983 457766655 8876 6678999999999999986 666677777774 66888876
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSNSLKLKE 434 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 434 (468)
.+.+++.++|.++++|++++++..+-+.
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 5799999999999999976666555443
No 118
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00014 Score=56.68 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=68.5
Q ss_pred EEEEecccccCCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEccc--Ch-HHHhcCCCC
Q 012212 277 VYVAFGSVAVLSQQQFAE--LALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWA--PQ-EKVLGHSSV 351 (468)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--p~-~~ll~~~~~ 351 (468)
+|||-||....=...+.. +.+-.+....++++.++.+ ...|- ...++.+|. +- +.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv-------agl~v~~F~~~~kiQsli~dar- 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV-------AGLRVYGFDKEEKIQSLIHDAR- 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc-------cccEEEeechHHHHHHHhhcce-
Confidence 789999973311111111 2222223345788888876 22220 112566554 33 56775555
Q ss_pred CceeeccCchhHHHhhhcCCceecccccc--------chhhhHHHHHHHhhceeEee
Q 012212 352 ACFISHCGWNSTMEGLSMGVPFLCWPYFS--------DQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 352 ~~~I~hGG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~rv~~~lG~g~~l~ 400 (468)
++|+|+|.||+..++..++|.|++|-.. -|..-|..+.+ ++.=+...
T Consensus 68 -IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 68 -IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred -EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 5999999999999999999999999643 56777777777 46655554
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.91 E-value=0.017 Score=52.39 Aligned_cols=107 Identities=14% Similarity=0.031 Sum_probs=69.1
Q ss_pred CCccChHHHHHHHHHHHHCCCEEEEEECCcc--hHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHH
Q 012212 13 PAQGHVAPLMKLATKIAERAIKVTVVNTQFI--HKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVAR 90 (468)
Q Consensus 13 ~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (468)
.-.-|+.-+..|..+|.++||+|.+-+-... .+.+..+ ++.+..+... ....+.+-+..+..
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y----------gf~~~~Igk~------g~~tl~~Kl~~~~e 71 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY----------GFPYKSIGKH------GGVTLKEKLLESAE 71 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh----------CCCeEeeccc------CCccHHHHHHHHHH
Confidence 3446888999999999999999998886542 2344443 3444444422 11122222222222
Q ss_pred HhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchH
Q 012212 91 AMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 91 ~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
... .+.+++.. .+||+.+. -..+..+.+|..+|+|.+++....-.
T Consensus 72 R~~-~L~ki~~~-------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 72 RVY-KLSKIIAE-------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHH-HHHHHHhh-------cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 222 24555555 78999999 67788999999999999998765443
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.84 E-value=0.001 Score=64.82 Aligned_cols=86 Identities=15% Similarity=0.250 Sum_probs=61.8
Q ss_pred hCCCceEEcccChHH---HhcCCCCCceeec----cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeec
Q 012212 330 VSNRGKIVEWAPQEK---VLGHSSVACFISH----CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 330 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~h----GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~ 401 (468)
...++++.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeC
Confidence 356788889998655 5755655 7742 343 578899999999999854 3455556653 56775532
Q ss_pred cCCCccCHHHHHHHHHHHhcChHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
. .+.++++++|.++++|++.+
T Consensus 328 ~----~d~~~la~~I~~ll~d~~~~ 348 (380)
T PRK15484 328 P----MTSDSIISDINRTLADPELT 348 (380)
T ss_pred C----CCHHHHHHHHHHHHcCHHHH
Confidence 2 47999999999999998753
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.79 E-value=0.015 Score=58.12 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=47.3
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceee---ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFIS---HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~---hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
.++|++.+|..+ ..++..+++ ||. +-| .+++.||+++|+|+|+.. -..+...+.+. ..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATd----vGG~~EiV~dG-~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTP----AGGSAECFIEG-VSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeC----CCCcHHHcccC-CcEEEECCC
Confidence 578888888654 456766655 885 345 479999999999999874 44566767664 678888764
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.67 E-value=0.0051 Score=54.61 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=34.9
Q ss_pred CCCceEEcccCh-HH---HhcCCCCCceeeccC----chhHHHhhhcCCceecccccc
Q 012212 331 SNRGKIVEWAPQ-EK---VLGHSSVACFISHCG----WNSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~---ll~~~~~~~~I~hGG----~~s~~eal~~GvP~v~~P~~~ 380 (468)
.+|+.+.+++++ +. ++.. ++++|+-.. .+++.||+.+|+|+|+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~--~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAA--ADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhc--CCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 568888888633 22 3322 455888776 789999999999999987543
No 123
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.63 E-value=0.079 Score=52.02 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCEE-EEEcCCCCCCcccCCchhHHHHhCCCceEEcccCh----HHHhcCCCCCceeec----cCc
Q 012212 290 QQFAELALGLESLQKPFL-WVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQ----EKVLGHSSVACFISH----CGW 360 (468)
Q Consensus 290 ~~~~~~~~a~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~----~~ll~~~~~~~~I~h----GG~ 360 (468)
.-...+++++..++.++- +.++.+ . ... .+++...++... ..+++.+++ ||.- |-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g----~-~~~--------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp 320 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKF----S-PFT--------AGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYP 320 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCC----C-ccc--------ccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCc
Confidence 345678888887755443 334432 0 011 234555566532 234533444 7763 334
Q ss_pred hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHH
Q 012212 361 NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKV 416 (468)
Q Consensus 361 ~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai 416 (468)
.++.||+++|+|+|+....+ ....+. . +-|+.++.. +.++|++++
T Consensus 321 ~vilEAmA~G~PVVat~~gG----~~Eiv~-~-~~G~lv~~~-----d~~~La~~~ 365 (405)
T PRK10125 321 LILCEALSIGVPVIATHSDA----AREVLQ-K-SGGKTVSEE-----EVLQLAQLS 365 (405)
T ss_pred CHHHHHHHcCCCEEEeCCCC----hHHhEe-C-CcEEEECCC-----CHHHHHhcc
Confidence 78999999999999996543 333333 3 578888764 577788654
No 124
>PLN02316 synthase/transferase
Probab=97.63 E-value=0.098 Score=56.45 Aligned_cols=119 Identities=6% Similarity=-0.042 Sum_probs=66.1
Q ss_pred CCCceEEcccChH---HHhcCCCCCceeec----cCchhHHHhhhcCCceecccccc--chhhh-------HHHHHHHhh
Q 012212 331 SNRGKIVEWAPQE---KVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFS--DQYQN-------RNYICEAWK 394 (468)
Q Consensus 331 ~~nv~~~~~~p~~---~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~--DQ~~n-------a~rv~~~lG 394 (468)
+++|++....+.. .+++.+ ++|+.- +=..+.+||+++|+|.|+....+ |.-.. +...-.. +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaA--DiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGA--DFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhC--cEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4567776444443 467445 448843 32458999999999888765422 22111 1100011 4
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
-|..++. .+++.|..+|.++|.+. .+....+++..++.+...=|-.+.+++.++..++
T Consensus 976 tGflf~~-----~d~~aLa~AL~raL~~~--~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 976 NGFSFDG-----ADAAGVDYALNRAISAW--YDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred ceEEeCC-----CCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 5777765 57999999999999742 3333334444444332233334555555544443
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.52 E-value=0.025 Score=53.67 Aligned_cols=135 Identities=10% Similarity=0.099 Sum_probs=76.5
Q ss_pred CccEEEEEeccc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcc--cCh-HHHh
Q 012212 273 IRSVVYVAFGSV---AVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEW--APQ-EKVL 346 (468)
Q Consensus 273 ~~~vv~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p~-~~ll 346 (468)
+++.|.+..|+. ..++.+.+.++++.+.+.++++++..++. .....-..+.+..+ +..+.+- +++ .+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 345666666653 55688899999999876677766654433 11111122322222 2334433 333 5578
Q ss_pred cCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhce-eEeeccCCCccCHHHHHHHHHHHh
Q 012212 347 GHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIG-LQFFADENGIITRQEIQRKVLTLL 420 (468)
Q Consensus 347 ~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g-~~l~~~~~~~~t~~~l~~ai~~~l 420 (468)
+++++ +|+. -.|.+.=|.+.|+|+|++ ++ +.+..+-.= +|-. ..+.......++++++.++|+++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 66655 9987 667788888999999876 11 112222111 1211 111111133499999999998875
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.36 E-value=0.00061 Score=55.43 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=49.3
Q ss_pred CCCceEEcccCh-HHHhcCCCCCceee--ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCc
Q 012212 331 SNRGKIVEWAPQ-EKVLGHSSVACFIS--HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGI 406 (468)
Q Consensus 331 ~~nv~~~~~~p~-~~ll~~~~~~~~I~--hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~ 406 (468)
.+|+++.+|++. .++++.+++.+..+ +.| .+++.|++++|+|+|+.+. .....++.. +.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-C-----
Confidence 569999999865 55777777644433 223 4899999999999999865 122333343 788777 3
Q ss_pred cCHHHHHHHHHHHhcC
Q 012212 407 ITRQEIQRKVLTLLKN 422 (468)
Q Consensus 407 ~t~~~l~~ai~~~l~~ 422 (468)
-+++++.++|+++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4799999999999876
No 127
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.03 E-value=0.012 Score=48.13 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=64.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLG 85 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (468)
|||+++.....| ...+++.|.++||+|++++.....+.... ..++.+..++... . .....+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~~------k-~~~~~~ 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSPR------K-SPLNYI 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCCC------C-ccHHHH
Confidence 577776655555 56789999999999999999655433322 1678888885321 1 112222
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhC-CceEEEcc
Q 012212 86 ESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMG-IARAAVVP 140 (468)
Q Consensus 86 ~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lg-iP~v~~~~ 140 (468)
. .. .+..++++ .+||+|.+-.... .+..++...+ +|++....
T Consensus 62 ----~-~~-~l~k~ik~-------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 ----K-YF-RLRKIIKK-------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ----H-HH-HHHHHhcc-------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 12 24445544 5699998887654 2334667788 99886543
No 128
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.94 E-value=0.0039 Score=59.54 Aligned_cols=108 Identities=16% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCCceEEcccChHHHhcC-C-CCCceeec-------cCc------hhHHHhhhcCCceeccccccchhhhHHHHHHHhhc
Q 012212 331 SNRGKIVEWAPQEKVLGH-S-SVACFISH-------CGW------NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKI 395 (468)
Q Consensus 331 ~~nv~~~~~~p~~~ll~~-~-~~~~~I~h-------GG~------~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~ 395 (468)
.+||.+.+|+|+.++..+ . +..++... |.+ +-+.+.+++|+|+|+. ++...+..|++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 578899999999775421 1 22222211 111 2367789999999985 667888899996 99
Q ss_pred eeEeeccCCCccCHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 396 GLQFFADENGIITRQEIQRKVLTLLKNDD---IRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 396 g~~l~~~~~~~~t~~~l~~ai~~~l~~~~---~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
|+.++ +.+++.+++.++.. ++ +++|++++++++++ |.--.+++++++.
T Consensus 281 G~~v~-------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNITE-EEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99986 35688989988643 33 78999999999988 6666677776654
No 129
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.87 E-value=0.4 Score=46.14 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEE-EEcCCCCCCCcC
Q 012212 1 MSR-QPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKL-VTIPDGLELQAA 76 (468)
Q Consensus 1 m~~-~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~ 76 (468)
|.+ ++|||++-..+.|++.-..++.++|.++ +.+|++++.+.+.+.++.. +.++- +.++..
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~id~vi~~~~~------ 65 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN---------PEINALYGIKNK------ 65 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC---------CCceEEEEeccc------
Confidence 654 7899999999999999999999999987 8999999999888766542 34432 223211
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
......- + ..+..++..++. .++|++|.=........++...|.|..+
T Consensus 66 -~~~~~~~---~-----~~~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 -KAGASEK---I-----KNFFSLIKVLRA----NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -cccHHHH---H-----HHHHHHHHHHhh----CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0011100 0 112344555655 5699999654333445667777887755
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.04 Score=54.23 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=88.6
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh------CCCceEEcccChHHHh
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV------SNRGKIVEWAPQEKVL 346 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~nv~~~~~~p~~~ll 346 (468)
++.+||++++......++.+..-.+-++..+.-++|..+++ ..+.....+++.. .++.++.+-.|..+-+
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~----~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG----DDAEINARLRDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC----CcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHH
Confidence 44699999999999999999998888888899999998875 1122222222111 5677777777765433
Q ss_pred c-CCCCCcee---eccCchhHHHhhhcCCceeccccccchhh--hHHH-HHHHhhceeEeeccCCCccCHHHHHHHHH
Q 012212 347 G-HSSVACFI---SHCGWNSTMEGLSMGVPFLCWPYFSDQYQ--NRNY-ICEAWKIGLQFFADENGIITRQEIQRKVL 417 (468)
Q Consensus 347 ~-~~~~~~~I---~hGG~~s~~eal~~GvP~v~~P~~~DQ~~--na~r-v~~~lG~g~~l~~~~~~~~t~~~l~~ai~ 417 (468)
+ +--.|+|. --||..|..|+|.+|||+|.. .++|+. |+.- ++. .|+-..+-.+ .++-|+.+++
T Consensus 504 a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~-agi~e~vA~s-----~~dYV~~av~ 573 (620)
T COG3914 504 ARYGIADLVLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATN-AGIPELVADS-----RADYVEKAVA 573 (620)
T ss_pred HhhchhheeeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHh-cCCchhhcCC-----HHHHHHHHHH
Confidence 2 22223365 469999999999999999998 466663 3333 333 3554444432 3666777773
No 131
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.68 E-value=0.04 Score=54.53 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=94.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHH---H---hCCCceEEcccChHH--
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIE---R---VSNRGKIVEWAPQEK-- 344 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~---~~~nv~~~~~~p~~~-- 344 (468)
++.|||++|--....+++.+++.++-+...+.-++|......-.+ ..|.. . .++++++.+-++..+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 456999999888888999999999999999999999988662222 22221 1 156666666655433
Q ss_pred ---HhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhH-HHHHHHhhceeEeeccCCCccCHHHHHHHHHHHh
Q 012212 345 ---VLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNR-NYICEAWKIGLQFFADENGIITRQEIQRKVLTLL 420 (468)
Q Consensus 345 ---ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na-~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l 420 (468)
.|..-.++-+.++ |..|.++.|++|||||.+|.-.=-..-| -.+.. +|+|-.+.+. ..|-..-+|+ +=
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~-----~eEY~~iaV~-La 902 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKN-----REEYVQIAVR-LA 902 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhh-----HHHHHHHHHH-hh
Confidence 2222223445565 6788999999999999999633222222 23444 6888766542 2444555554 33
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 012212 421 KNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 421 ~~~~~r~~a~~l~~~~~~~ 439 (468)
.|.+ ..++|+.+++++
T Consensus 903 td~~---~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 903 TDKE---YLKKLRAKLRKA 918 (966)
T ss_pred cCHH---HHHHHHHHHHHH
Confidence 3444 344455555554
No 132
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.62 E-value=0.43 Score=44.78 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=57.4
Q ss_pred ccEEEEEeccc---ccCCHHHHHHHHH----HHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEE---cccC
Q 012212 274 RSVVYVAFGSV---AVLSQQQFAELAL----GLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIV---EWAP 341 (468)
Q Consensus 274 ~~vv~vs~Gs~---~~~~~~~~~~~~~----a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~---~~~p 341 (468)
++.+.|-.|.- ...+.+....+++ ..+..+..++++++..+ ....-..+.+.. .+.+.+. +.=|
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRT----p~~~~~~L~~~~~~~~~~~~~~~~~~nP 221 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRT----PPEAEAALRELLKDNPGVYIWDGTGENP 221 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCC----cHHHHHHHHHhhcCCCceEEecCCCCCc
Confidence 44566666643 4455664444433 33444545666665541 111111222222 2333333 2237
Q ss_pred hHHHhcCCCCCceeeccCc-hhHHHhhhcCCceecccccc
Q 012212 342 QEKVLGHSSVACFISHCGW-NSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 342 ~~~ll~~~~~~~~I~hGG~-~s~~eal~~GvP~v~~P~~~ 380 (468)
+..+|+.++. +|.=+.. +=+.||+..|+|+.+++.-.
T Consensus 222 y~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 222 YLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 8889977765 6666665 67899999999999999865
No 133
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.61 E-value=0.72 Score=44.29 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=69.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEE-cCCCCCCCcCCCCCH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVT-IPDGLELQAADREDP 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~ 81 (468)
||||++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. +.++-+. ++.. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~vd~vi~~~~~--------~~~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPLG--------HGA 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC---------CccCEEEecccc--------cch
Confidence 589999999999999999999999986 8999999998887777653 4444332 2210 000
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
..+ ....+++..++. .++|++|.=....-+..++...|+|.-+
T Consensus 64 ~~~---------~~~~~l~~~lr~----~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LEI---------GERRRLGHSLRE----KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhh---------HHHHHHHHHHHh----cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 010 112344555655 5699998654444556677777888654
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=96.53 E-value=0.099 Score=49.48 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCCceEE---cccChH---HHhcCCCCCceeec---cC-chhHHHhhhcCCceecccc------ccch------hhhHHH
Q 012212 331 SNRGKIV---EWAPQE---KVLGHSSVACFISH---CG-WNSTMEGLSMGVPFLCWPY------FSDQ------YQNRNY 388 (468)
Q Consensus 331 ~~nv~~~---~~~p~~---~ll~~~~~~~~I~h---GG-~~s~~eal~~GvP~v~~P~------~~DQ------~~na~r 388 (468)
++++++. +++++. ++++.+++ ||.- =| ..++.||+++|+|+|+.-. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 6788887 455654 45655555 8863 24 4689999999999998632 2332 333333
Q ss_pred HH--HHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 389 IC--EAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 389 v~--~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
.. +. |.|..++. .++++++++|.+++..
T Consensus 278 ~~~~~~-g~g~~~~~-----~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEH-GQKWKIHK-----FQIEDMANAIILAFEL 307 (335)
T ss_pred hcCccc-CceeeecC-----CCHHHHHHHHHHHHhc
Confidence 22 23 56666654 7899999999999543
No 135
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.38 E-value=0.79 Score=43.72 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDP 81 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (468)
|||||++-..+.|++.-..++-..|+++. .+++|++.+.+.+..... +.++-+..-.. . .. +
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---------p~I~~vi~~~~--~---~~-~- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---------PEIDKVIIIDK--K---KK-G- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---------hHhhhhccccc--c---cc-c-
Confidence 57999999999999999999999999985 999999999888777653 22222211110 0 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
........+.+.+++ .++|+||.=.-..-...++...++|...-.
T Consensus 65 ---------~~~~~~~~l~~~lr~----~~yD~vidl~~~~ksa~l~~~~~~~~r~g~ 109 (334)
T COG0859 65 ---------LGLKERLALLRTLRK----ERYDAVIDLQGLLKSALLALLLGIPFRIGF 109 (334)
T ss_pred ---------cchHHHHHHHHHhhc----cCCCEEEECcccHHHHHHHHHhCCCccccc
Confidence 111223445555554 459999876665566667778888876533
No 136
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.23 E-value=0.011 Score=44.61 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCchhhhhhcccCccEEEEEecccccC---C--HHHHHHHHHHHHhCCCCEEEEEcCC
Q 012212 261 DSSCLSWLDEQAIRSVVYVAFGSVAVL---S--QQQFAELALGLESLQKPFLWVIRQD 313 (468)
Q Consensus 261 ~~~l~~~l~~~~~~~vv~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~l~~~~~~ 313 (468)
...+.+|+.....++-|++|+|+.... . ...+..++++++.++..++..+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 445668999888999999999987432 2 2588999999999999999999866
No 137
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.15 E-value=1.1 Score=42.58 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=40.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~ 49 (468)
||||++-..+.|++.-..++.+.|+++ +.+|+|++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 589999999999999999999999987 999999999887766543
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.09 E-value=0.92 Score=43.24 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=67.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEE-EcCCCCCCCcCCCCCHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLV-TIPDGLELQAADREDPL 82 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 82 (468)
|||++-..+.|++.-..++.++|.++ +.+|+|++.+.+.+.++.. +.++-+ .++.. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~id~v~~~~~~--------~~~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM---------PEIRQAIDMPLG--------HGAL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC---------chhceeeecCCc--------ccch
Confidence 68999999999999999999999987 8999999998776666543 334322 12210 0000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
.. ....+++..++. .++|++|.-....-+..++...|+|.-+
T Consensus 64 ~~---------~~~~~~~~~lr~----~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 EL---------TERRRLGRSLRE----ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred hh---------hHHHHHHHHHhh----cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 10 012344555554 4699999865555566677777888643
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=96.01 E-value=0.32 Score=46.25 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=58.6
Q ss_pred cccChHH---HhcCCCCCceee---ccC-chhHHHhhhcCCceeccccccchhhhHHHHHHH------------------
Q 012212 338 EWAPQEK---VLGHSSVACFIS---HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEA------------------ 392 (468)
Q Consensus 338 ~~~p~~~---ll~~~~~~~~I~---hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~------------------ 392 (468)
.++|+.+ +++.+++ +|. ..| ..++.||+++|+|+|+.-..+ ....+...
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~ 269 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTN 269 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccC
Confidence 4477655 5655555 663 333 468999999999999985432 12222221
Q ss_pred -hhceeEeeccCCCccCHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 393 -WKIGLQFFADENGIITRQEIQRKVLTLLKN---DDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 393 -lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~---~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
-++|..++ .+.+++.+++.++|.| ++++++...-+....+ .=+-.+..+++.+.++
T Consensus 270 ~~~~G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 270 PIHVGYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred CcccccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 02343332 3567788888888887 4555554444443333 2233444455554443
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.96 E-value=0.08 Score=44.53 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=60.5
Q ss_pred HCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCC
Q 012212 30 ERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDC 109 (468)
Q Consensus 30 ~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 109 (468)
++||+|+++|........ .+++...+...-.... ...-...-++......+. +...+..|++.+
T Consensus 1 q~gh~v~fl~~~~~~~~~------------~GV~~~~y~~~~~~~~-~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~G-- 64 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------------PGVRVVRYRPPRGPTP-GTHPYVRDFEAAVLRGQA-VARAARQLRAQG-- 64 (171)
T ss_pred CCCCEEEEEecCCCCCCC------------CCcEEEEeCCCCCCCC-CCCcccccHHHHHHHHHH-HHHHHHHHHHcC--
Confidence 579999999965433221 3577776654221111 111112223333333444 444555666666
Q ss_pred CCceEEEecCCcccHHHHHHHh-CCceEEEccc
Q 012212 110 EPIRCVIADVTVGSALEVAESM-GIARAAVVPF 141 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~l-giP~v~~~~~ 141 (468)
..||+||..+-+-.+..+.+.+ ++|.+.+.-.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 8899999999888899999999 9999987754
No 141
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.94 E-value=0.89 Score=42.06 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=65.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECCcchHHHHHhhhhhccCCCCCeEEE-EcCCCCCCCcCCCCCHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLV-TIPDGLELQAADREDPL 82 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 82 (468)
|||++-..+.|++.-..++.++|+++. -+|++++.+.+.+.++.. +.++-+ .++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~---------p~id~v~~~~~~~-----~~~~~- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM---------PEVDRVIVLPKKH-----GKLGL- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC---------CccCEEEEcCCcc-----cccch-
Confidence 688888889999999999999999975 899999999887777653 333332 222110 00011
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
..+.+++..++. .++|+++.=........++...+++...
T Consensus 66 -----------~~~~~~~~~l~~----~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 -----------GARRRLARALRR----RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----------HHHHHHHHHHhh----cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 123344555554 4599998765554444456666666543
No 142
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.89 E-value=1.4 Score=42.26 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=69.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeE-EEEcCCCCCCCcCCCCCHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIK-LVTIPDGLELQAADREDPL 82 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~ 82 (468)
|||++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. +.++ ++.++.... .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~~~-----~~~~~ 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN---------PDINALYGLDRKKA-----KAGER 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC---------CCccEEEEeChhhh-----cchHH
Confidence 68999889999999999999999986 8999999999888777653 4454 333332110 00000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
.+ .. +.+++..++. .++|++|.=.....+..++...|.|.-+
T Consensus 67 ----~~----~~-~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 ----KL----AN-QFHLIKVLRA----NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ----HH----HH-HHHHHHHHHh----CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11 11 2234455554 4699998654444667788888999755
No 143
>PRK14098 glycogen synthase; Provisional
Probab=95.73 E-value=0.22 Score=50.25 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=67.8
Q ss_pred HhCCCceEEcccChH---HHhcCCCCCceeecc---Cc-hhHHHhhhcCCceecccccc--chhhhHHHHHHHhhceeEe
Q 012212 329 RVSNRGKIVEWAPQE---KVLGHSSVACFISHC---GW-NSTMEGLSMGVPFLCWPYFS--DQYQNRNYICEAWKIGLQF 399 (468)
Q Consensus 329 ~~~~nv~~~~~~p~~---~ll~~~~~~~~I~hG---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~lG~g~~l 399 (468)
+.+++|.+..+++.. .+++.+++ ++.-. |. .+.+||+++|+|.|+....+ |.-.+ ..++. +.|..+
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEe
Confidence 346788888888774 46755555 77543 22 47889999999888775432 21110 01122 677777
Q ss_pred eccCCCccCHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 400 FADENGIITRQEIQRKVLTLL---KNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 400 ~~~~~~~~t~~~l~~ai~~~l---~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
+. .+++.+.++|.+++ +|++.++ ++++ +++...=|-.+.+++.++..++.
T Consensus 434 ~~-----~d~~~la~ai~~~l~~~~~~~~~~---~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 434 HD-----YTPEALVAKLGEALALYHDEERWE---ELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred CC-----CCHHHHHHHHHHHHHHHcCHHHHH---HHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 65 56899999999876 4544322 2222 22222334455556666555543
No 144
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.52 E-value=0.38 Score=48.67 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCceEEcccC--h-HHHhcCCCCCceeecc---CchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 332 NRGKIVEWAP--Q-EKVLGHSSVACFISHC---GWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 332 ~nv~~~~~~p--~-~~ll~~~~~~~~I~hG---G~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
.+|.+.++.. + ...+...++ +|.=+ |.++..||+.+|+|+| .......|+.. .=|..+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe------
Confidence 5677778888 4 446655544 88766 6679999999999999 22233344442 445555
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
-+.++|.++|..+|.+.+-.+++..
T Consensus 473 -~d~~~l~~al~~~L~~~~~wn~~~~ 497 (519)
T TIGR03713 473 -DDISELLKALDYYLDNLKNWNYSLA 497 (519)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 2688999999999999874444333
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.46 E-value=0.02 Score=47.59 Aligned_cols=98 Identities=23% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHH
Q 012212 19 APLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRD 98 (468)
Q Consensus 19 ~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (468)
.-+..|+++|.++||+|++++.......-. ....++.+..++-..... .......+ ..+..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~ 65 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE--------EEEDGVRVHRLPLPRRPW------PLRLLRFL-----RRLRR 65 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S--------EEETTEEEEEE--S-SSS------GGGHCCHH-----HHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc--------cccCCceEEeccCCccch------hhhhHHHH-----HHHHH
Confidence 346789999999999999999766554221 111567777776322111 11111111 11233
Q ss_pred HHHHHhhCCCCCCceEEEecCCcc-cHHHHHH-HhCCceEEEcc
Q 012212 99 LIEKINQSNDCEPIRCVIADVTVG-SALEVAE-SMGIARAAVVP 140 (468)
Q Consensus 99 ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~-~lgiP~v~~~~ 140 (468)
++ .... .+||+|.+..... ....++. ..++|+++...
T Consensus 66 ~l-~~~~----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 66 LL-AARR----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HC-HHCT-------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HH-hhhc----cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 33 1122 6799999987432 2223444 78999988654
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.41 E-value=0.27 Score=41.61 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=62.6
Q ss_pred EcCCCccChHHHHHHHHHH-HH-CCCEEEEEECCcchH--HHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHH
Q 012212 10 IPYPAQGHVAPLMKLATKI-AE-RAIKVTVVNTQFIHK--KIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLG 85 (468)
Q Consensus 10 ~~~~~~GH~~p~~~LA~~L-~~-rGH~Vt~~~~~~~~~--~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (468)
+-.++.||+.-|+.|.+.+ .+ ..++..+++..+... ++.+...... ....+..+|....-. ....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~----~~~~~~~~~r~r~v~-------q~~~ 71 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS----KRHKILEIPRAREVG-------QSYL 71 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc----ccceeeccceEEEec-------hhhH
Confidence 3346889999999999999 33 357777777765533 3332221100 111344444221111 1111
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHh------CCceEEEcc
Q 012212 86 ESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESM------GIARAAVVP 140 (468)
Q Consensus 86 ~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~l------giP~v~~~~ 140 (468)
..........+..+. -+.. .+||+||+..-.. ..+.+|+.+ |.+.|++-+
T Consensus 72 ~~~~~~l~~~~~~~~-il~r----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTLRAFLQSLR-ILRR----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHHHHHHHHHH-HHHH----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 222222222222221 1222 4699999998766 555788889 999998764
No 147
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.16 E-value=2.2 Score=38.06 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCC-----ceE-----EcccChHHHhcCCCCCceeeccCc-hhH
Q 012212 295 LALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNR-----GKI-----VEWAPQEKVLGHSSVACFISHCGW-NST 363 (468)
Q Consensus 295 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n-----v~~-----~~~~p~~~ll~~~~~~~~I~hGG~-~s~ 363 (468)
+.+.+++-+..++++.+.. -|+........| +.+ .++=||.++|+-+ |.+|.-... +-+
T Consensus 189 l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~A--dyii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAA--DYIISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhc--ceEEEecchhhhh
Confidence 4445666788899888866 122221111221 222 1445999999655 447777665 778
Q ss_pred HHhhhcCCceecc
Q 012212 364 MEGLSMGVPFLCW 376 (468)
Q Consensus 364 ~eal~~GvP~v~~ 376 (468)
.||...|+|+.++
T Consensus 259 sEAasTgkPv~~~ 271 (329)
T COG3660 259 SEAASTGKPVFIL 271 (329)
T ss_pred HHHhccCCCeEEE
Confidence 9999999999654
No 148
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.12 E-value=0.21 Score=37.30 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=50.9
Q ss_pred ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhh-ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012212 357 HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWK-IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEV 435 (468)
Q Consensus 357 hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~ 435 (468)
+|-..-+.|++++|+|+|+-.. ......+.. | -++.. -+.+++.++|+.+++|++.+++..+-+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-------~~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-------NDPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-------CCHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4556789999999999998743 233322222 3 22222 26999999999999999855554444433
Q ss_pred HHHHhcCCCchHHHHHHHH
Q 012212 436 ARKSLLGGGSSFRNFESFI 454 (468)
Q Consensus 436 ~~~~~~~~g~~~~~~~~~~ 454 (468)
.-. ..=+....+++++
T Consensus 76 ~v~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVL---KRHTWEHRAEQIL 91 (92)
T ss_pred HHH---HhCCHHHHHHHHH
Confidence 322 1444455555554
No 149
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=3.2 Score=38.71 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch--HHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH--KKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~--~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
.++.|+.++-.+..||--+|.-=|..|++.|.+|.++..-... +.+.. -++++++.++.--.... .+.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~---------hprI~ih~m~~l~~~~~-~p~ 79 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN---------HPRIRIHGMPNLPFLQG-GPR 79 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc---------CCceEEEeCCCCcccCC-Cch
Confidence 4678899998899999999999999999999999999876542 23322 28899999985432221 222
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc-ccHHHHHHHh----CCceEEEcccchHH
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV-GSALEVAESM----GIARAAVVPFGPGS 145 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~-~~~~~~A~~l----giP~v~~~~~~~~~ 145 (468)
-.+-.++.++..+. .+..++. . .++|.+++-.-. .....+|..+ |..+++=|....+.
T Consensus 80 ~~~l~lKvf~Qfl~-Ll~aL~~----~---~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 VLFLPLKVFWQFLS-LLWALFV----L---RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhHHHHHHHHHH-HHHHHHh----c---cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 22333333332211 2233332 1 568998886533 3555555544 77777766655543
No 150
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.37 E-value=0.31 Score=42.21 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=30.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
||||+.-==+. +-.-+..|+++|.+.||+|+++.+...+-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 57777753333 4445788999998888999999998876554
No 151
>PRK14099 glycogen synthase; Provisional
Probab=93.71 E-value=1.9 Score=43.41 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYP------AQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+.|||||++.- ..|=-...-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 56899988432 33555678899999999999999999854
No 152
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.32 Score=40.00 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA------ 76 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------ 76 (468)
.+|||++.-.|+.|-..-++.|++.|.+.|++|-=+-++.-.+.-.. .+++++.+..+-...-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR----------~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR----------IGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE----------eeeEEEEccCCceEEEEEcCCCC
Confidence 46899999999999999999999999999999876555543322221 55777777633211110
Q ss_pred -CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 77 -DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
....+....+.+-+.+-+.++..++. .|+||.|-..+
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~~~---------aDvIIIDEIGp 111 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRALEE---------ADVIIIDEIGP 111 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHhhc---------CCEEEEecccc
Confidence 11222223333333333334444433 79999997654
No 153
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=93.38 E-value=7.6 Score=37.12 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccc-CCc-----hhHHHHhCCCceE--EcccCh---HHHhcCCCCCceee
Q 012212 288 SQQQFAELALGLESLQKPFLWVIRQDFMNGSRA-KFP-----DGFIERVSNRGKI--VEWAPQ---EKVLGHSSVACFIS 356 (468)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~-~~~-----~~~~~~~~~nv~~--~~~~p~---~~ll~~~~~~~~I~ 356 (468)
+..-+..++++++..+.++.+.+..+....... -+. .+- ....+++.+ .+|+|| +.+|-.+++ -+=
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~-~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--NfV 269 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGD-SWQRGNLTLHVLPFVPQDDYDRLLWACDF--NFV 269 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCcc-ccccCCeEEEECCCCCHHHHHHHHHhCcc--ceE
Confidence 555678888888887777776666551111000 000 000 011355555 499998 458866665 333
Q ss_pred ccCchhHHHhhhcCCcee--cccc
Q 012212 357 HCGWNSTMEGLSMGVPFL--CWPY 378 (468)
Q Consensus 357 hGG~~s~~eal~~GvP~v--~~P~ 378 (468)
- |=-|+.-|..+|+|.| +.|+
T Consensus 270 R-GEDSfVRAqwAgkPFvWhIYpQ 292 (374)
T PF10093_consen 270 R-GEDSFVRAQWAGKPFVWHIYPQ 292 (374)
T ss_pred e-cchHHHHHHHhCCCceEecCcC
Confidence 3 7789999999999998 6654
No 154
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.00 E-value=0.71 Score=45.99 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=66.8
Q ss_pred cccChHHH---hcCCCCCceee---ccCc-hhHHHhhhcCCc----eeccccccchhhhHHHHHHHhhceeEeeccCCCc
Q 012212 338 EWAPQEKV---LGHSSVACFIS---HCGW-NSTMEGLSMGVP----FLCWPYFSDQYQNRNYICEAWKIGLQFFADENGI 406 (468)
Q Consensus 338 ~~~p~~~l---l~~~~~~~~I~---hGG~-~s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~ 406 (468)
+.+|+.++ +..+++ ++. +=|+ .++.||+++|+| +|+.-+.+ .+.. ++-|+.++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~----l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQE----LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHH----hCCcEEECC-----
Confidence 56677654 544544 775 3465 588899999999 66554332 2222 345677766
Q ss_pred cCHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 407 ITRQEIQRKVLTLLKNDD--IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 407 ~t~~~l~~ai~~~l~~~~--~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
.+.++++++|.++|+++. .+++.+++.+.... -+...-+++++.++.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 579999999999998543 55566666666544 266677777877663
No 155
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.50 E-value=1.3 Score=39.98 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCccCh-HHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCC-CCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHV-APLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDG-LELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~-~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 80 (468)
++||||+.- -.|-. --+..|+++|.+.| +|+++.+...+....... ....++++..+... ....-.....
T Consensus 4 ~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-----t~~~pl~~~~~~~~~~~~~y~v~GT 75 (257)
T PRK13932 4 KKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM-----TLGVPLRIKEYQKNNRFFGYTVSGT 75 (257)
T ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc-----cCCCCeEEEEEccCCCceEEEEcCc
Confidence 457988775 33332 34778899998888 799888876554433221 22255666655411 0000001112
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec----------CCcc---cHHHHHHHhCCceEEEcc
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD----------VTVG---SALEVAESMGIARAAVVP 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 140 (468)
+.+... --+..+.. .+||+||+- .+.+ ++..-|..+|||.|.++.
T Consensus 76 PaDCV~-----------lal~~~~~----~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 76 PVDCIK-----------VALSHILP----EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHH-----------HHHHhhcC----CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 222211 11222221 459999874 3333 333445677999999874
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=92.46 E-value=1.6 Score=43.15 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCcccCCchhHHHHhCCCceEE-cccC-h-HHHhcCC
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQK-PFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIV-EWAP-Q-EKVLGHS 349 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p-~-~~ll~~~ 349 (468)
..++.+| ..+.++.+....+++|. .+-+...... + ..+ ..+ ++. +|+++. ++.+ . .+++..+
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--s--~kL-~~L-~~y-~nvvly~~~~~~~l~~ly~~~ 348 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--S--SKL-MSL-DKY-DNVKLYPNITTQKIQELYQTC 348 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--c--HHH-HHH-Hhc-CCcEEECCcChHHHHHHHHhc
Confidence 3467776 25566666666666554 4444222210 0 111 122 333 788877 7788 4 6799899
Q ss_pred CCCceeeccC--chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH-HH
Q 012212 350 SVACFISHCG--WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD-IR 426 (468)
Q Consensus 350 ~~~~~I~hGG--~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~-~r 426 (468)
++-+-|+||+ ..++.||+.+|+|++..=...- +...+ . . |-..+. -+.+++.++|.++|.|++ ++
T Consensus 349 dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~--~-g~l~~~-----~~~~~m~~~i~~lL~d~~~~~ 416 (438)
T TIGR02919 349 DIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-A--S-ENIFEH-----NEVDQLISKLKDLLNDPNQFR 416 (438)
T ss_pred cEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-c--C-CceecC-----CCHHHHHHHHHHHhcCHHHHH
Confidence 9888889977 4899999999999998842211 11111 1 1 444444 358999999999999996 55
Q ss_pred HHHHHHHHHH
Q 012212 427 SNSLKLKEVA 436 (468)
Q Consensus 427 ~~a~~l~~~~ 436 (468)
++..+-++..
T Consensus 417 ~~~~~q~~~a 426 (438)
T TIGR02919 417 ELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 157
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.39 E-value=1.6 Score=36.49 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred CccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 14 AQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 14 ~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..|=-.-+..|+++|+++||+|++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 44677789999999999999999998864
No 158
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.50 E-value=9.9 Score=35.41 Aligned_cols=88 Identities=18% Similarity=0.353 Sum_probs=57.2
Q ss_pred CCceEEcccCh---HHHhcCCCCCceeec---cCch-hHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCC
Q 012212 332 NRGKIVEWAPQ---EKVLGHSSVACFISH---CGWN-STMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADEN 404 (468)
Q Consensus 332 ~nv~~~~~~p~---~~ll~~~~~~~~I~h---GG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~ 404 (468)
+++.+.+++|+ ..++..+++ ++.- .|.| ++.||+++|+|+|.. +.......+... +.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~~-~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVEDG-ETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcCC-CceE-ecCC--
Confidence 67777899983 335655544 6666 3554 469999999999776 444444444442 3466 3221
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
...+.+.+++..++++.+.++....
T Consensus 327 --~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 327 --GDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred --CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 2589999999999998854444443
No 159
>PLN02939 transferase, transferring glycosyl groups
Probab=91.36 E-value=4.8 Score=43.38 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCCceEEcccChH---HHhcCCCCCceeec----cCchhHHHhhhcCCceecccccc--chhhh--HHHH-HHHhhceeE
Q 012212 331 SNRGKIVEWAPQE---KVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFS--DQYQN--RNYI-CEAWKIGLQ 398 (468)
Q Consensus 331 ~~nv~~~~~~p~~---~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~rv-~~~lG~g~~ 398 (468)
.++|++..+.+.. .+++.+++ ||.- |-..+.+||+++|+|.|+....+ |--.+ ...+ ... +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 4578888877764 46755544 8853 22358999999999999875533 21111 1111 121 45766
Q ss_pred eeccCCCccCHHHHHHHHHHHhc----ChHHHHHHH
Q 012212 399 FFADENGIITRQEIQRKVLTLLK----NDDIRSNSL 430 (468)
Q Consensus 399 l~~~~~~~~t~~~l~~ai~~~l~----~~~~r~~a~ 430 (468)
++. .+++.+.++|.+++. |++.+++..
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L~ 943 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKPEVWKQLV 943 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 665 468889999988774 666554443
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.33 E-value=1.2 Score=35.02 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=37.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
||++.+.++..|.....-++..|.++|++|+++......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58899999999999999999999999999999877655544444
No 161
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.02 E-value=3.4 Score=38.91 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=36.0
Q ss_pred CCEEEEEcC-CCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPY-PAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~-~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
++||+|++. +|-|-..-..++|-.|++.|++|.++++++.+..-..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhh
Confidence 467876654 4559999999999999999999999988876654443
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.00 E-value=1.1 Score=36.29 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=43.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
+++.+|++.+.++.+|-.-..-++..|..+|++|+++......+.+.+..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a 50 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA 50 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 35679999999999999999999999999999999999987766665543
No 163
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=90.57 E-value=2.9 Score=37.67 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=59.9
Q ss_pred CEEEEEcCCCccCh-HHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCC--CCCCCcCCCCCH
Q 012212 5 PHVLVIPYPAQGHV-APLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPD--GLELQAADREDP 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~-~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~ 81 (468)
||||+.- -.|-. --+.+|+++|.+.| +|+++.+...+....... .....+++..++. +..... ....+
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-----t~~~pl~~~~~~~~~~~~~~~-v~GTP 71 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL-----TLFEPLRVGQVKVKNGAHIYA-VDGTP 71 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc-----CCCCCeEEEEeccCCCccEEE-EcCcH
Confidence 4666553 33333 34778899999988 899999887665554322 2224566655542 110000 11122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecC----------Ccc---cHHHHHHHhCCceEEEcc
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADV----------TVG---SALEVAESMGIARAAVVP 140 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 140 (468)
.+....- +..+.. .+|||||+-. +++ ++..-|..+|||.+.++.
T Consensus 72 aDcv~~g-----------l~~l~~----~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 72 TDCVILG-----------INELMP----EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHHHH-----------HHHhcc----CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 2222211 122221 4589988643 333 334455677999999874
No 164
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.44 E-value=2.8 Score=41.92 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred ceEE-cccChHHH---hcCCCCCceee---ccCc-hhHHHhhhcCCc----eeccccccchhhhHHHHHHHhhceeEeec
Q 012212 334 GKIV-EWAPQEKV---LGHSSVACFIS---HCGW-NSTMEGLSMGVP----FLCWPYFSDQYQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 334 v~~~-~~~p~~~l---l~~~~~~~~I~---hGG~-~s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~lG~g~~l~~ 401 (468)
+++. +++++.++ +..+++ +|. +-|+ .++.||+++|+| +|+.-..+ -+ +. ..-|+.++.
T Consensus 342 v~~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~---~~-~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA---EE-LSGALLVNP 411 (460)
T ss_pred EEEEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----ch---hh-cCCCEEECC
Confidence 4443 77887664 555554 774 3454 578999999999 54442221 11 11 134666665
Q ss_pred cCCCccCHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 402 DENGIITRQEIQRKVLTLLKNDD--IRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~--~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
.+.++++++|.++|+++. .+++.++..+...+ -+...-+++++.++
T Consensus 412 -----~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -----YDIDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred -----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 569999999999998653 33333333333333 25556666666554
No 165
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.26 E-value=1 Score=40.96 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhh--HHHHHHHhhceeEeeccCCCcc
Q 012212 331 SNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQN--RNYICEAWKIGLQFFADENGII 407 (468)
Q Consensus 331 ~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~n--a~rv~~~lG~g~~l~~~~~~~~ 407 (468)
++|-.+. .|-.+.++|.++++ .|--.|.- +-+++=-|||+|.+|-.+-|+.- |.|=.+-||..+.+-..
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----- 364 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----- 364 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----
Confidence 3455555 66677777766655 44333322 33467889999999999999764 55545545777777553
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 408 TRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
.++.-..+..++|.|+++.+.++.-+
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air~nG 390 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIRHNG 390 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHHhcc
Confidence 23333344445999999887777444
No 166
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=89.87 E-value=3.8 Score=35.78 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCEEEEEcCC--CccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYP--AQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~--~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+|++++++ +-|-..-...|+-+|+++|++|.++-.+-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 5678888776 55999999999999999999999998763
No 167
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=89.35 E-value=3.4 Score=44.08 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred EEcccChHH---HhcCCCCCceeec---cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccC
Q 012212 336 IVEWAPQEK---VLGHSSVACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIIT 408 (468)
Q Consensus 336 ~~~~~p~~~---ll~~~~~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t 408 (468)
+.+++++.+ ++..+++ |+.- -|+ .++.|++++|+|-...|...+--.-+ .+ +.-|+.++. .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEECC-----CC
Confidence 347888866 4544544 7754 354 58899999977522222222211111 12 334777776 57
Q ss_pred HHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 409 RQEIQRKVLTLLKND--DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 409 ~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
.++++++|.++|+++ +.+++.+++.+.... -+...-++++++.+++..
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 999999999999854 355555555555443 356777888888777653
No 168
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.08 E-value=1.1 Score=42.02 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=35.9
Q ss_pred CEEE-EEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 5 PHVL-VIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 5 ~~Il-~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
||++ |.--+|.|-..-..++|-.++++|++|.++++++....-...+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhC
Confidence 3555 4455667999999999999999999999999998766544443
No 169
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=88.94 E-value=6.1 Score=35.66 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=27.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
||||+.-==|. |---+.+|+++|.+ +|+|+++.+...+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATG 42 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcccc
Confidence 46666642222 33347788999964 68999999877655443
No 170
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.46 E-value=7.5 Score=35.14 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=26.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
||||+.-==|. |---+..|+++|.+ +|+|+++.+...+...
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 46776632222 22237788999965 6899999887765543
No 171
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.32 E-value=2.2 Score=45.82 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred cccChHH---HhcCCCCCceeec---cCch-hHHHhhhcCCc---eeccccccchhhhHHHHHHHhh-ceeEeeccCCCc
Q 012212 338 EWAPQEK---VLGHSSVACFISH---CGWN-STMEGLSMGVP---FLCWPYFSDQYQNRNYICEAWK-IGLQFFADENGI 406 (468)
Q Consensus 338 ~~~p~~~---ll~~~~~~~~I~h---GG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~~~ 406 (468)
.++|+.+ ++..+++ |+.- -|+| ++.|++++|+| +++++ |--..+.. +| -|+.++.
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~----l~~~allVnP----- 427 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS----LGAGALLVNP----- 427 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh----hcCCeEEECC-----
Confidence 3455544 5555555 7754 3775 77899999999 33433 22222221 34 5788877
Q ss_pred cCHHHHHHHHHHHhc-ChH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 407 ITRQEIQRKVLTLLK-NDD-IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 407 ~t~~~l~~ai~~~l~-~~~-~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
.+.++++++|.++|+ +++ .+++.+++.+..... +...-.++|++++.+..
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDII 479 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHHh
Confidence 679999999999998 544 444555566555552 55677778887776554
No 172
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=88.05 E-value=24 Score=33.38 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHH-HhCC-CCEEEEEcCCCCCCcccCCchhHHHH--hCCCceEEcccChHH---HhcCCCCCceeeccC-
Q 012212 288 SQQQFAELALGL-ESLQ-KPFLWVIRQDFMNGSRAKFPDGFIER--VSNRGKIVEWAPQEK---VLGHSSVACFISHCG- 359 (468)
Q Consensus 288 ~~~~~~~~~~a~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~~~---ll~~~~~~~~I~hGG- 359 (468)
..+++..++..+ .+.+ .+|++.-.+. ....+ ++..|+ ..++|.+.+-+|+++ +|..-++ |++-.=
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGP----k~i~l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGP----KRIDL-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCc----ccchH-HHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 345666666544 4333 3555444433 11112 233333 378899999999865 5655555 665443
Q ss_pred ---chhHHHhhhcCCceecc
Q 012212 360 ---WNSTMEGLSMGVPFLCW 376 (468)
Q Consensus 360 ---~~s~~eal~~GvP~v~~ 376 (468)
.-++.||..+|.|+|..
T Consensus 282 Eafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 23678999999999865
No 173
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=87.88 E-value=13 Score=35.01 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCceEE-cccCh---HHHhcCCCCCceeec--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 332 NRGKIV-EWAPQ---EKVLGHSSVACFISH--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 332 ~nv~~~-~~~p~---~~ll~~~~~~~~I~h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
+|+.+. +++|. .++|..+++..|.|. =|.|++.-.|+.|+|+++- .+----.-+++. |+=+-...++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~-~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQ-GIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhC-CCeEEecccc--
Confidence 577664 78875 569988888666664 4899999999999999876 444444555663 7777777677
Q ss_pred ccCHHHHHHHHHHHhc
Q 012212 406 IITRQEIQRKVLTLLK 421 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~ 421 (468)
++...|+++=+++.+
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 999999999888875
No 174
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=87.87 E-value=8.3 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
||||+.-==|. |---+..|+++|.+.| +|+++.+...+...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 46666542222 3355788999998887 79988887655444
No 175
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=87.74 E-value=13 Score=34.54 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=58.9
Q ss_pred CCceEE-cccC---hHHHhcCCCCCceeec--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCC
Q 012212 332 NRGKIV-EWAP---QEKVLGHSSVACFISH--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENG 405 (468)
Q Consensus 332 ~nv~~~-~~~p---~~~ll~~~~~~~~I~h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~ 405 (468)
+|+.+. +++| |.++|+.+++..|+|+ =|.|++.-.+++|||+++-- +=+.+.. +.+ .|+-+-.+.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCCc--
Confidence 788875 7777 5669989998777776 47899999999999999873 2233333 344 37877667777
Q ss_pred ccCHHHHHHHHHHHh
Q 012212 406 IITRQEIQRKVLTLL 420 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l 420 (468)
++...+.++=+++.
T Consensus 279 -L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 -LDEDIVREAQRQLA 292 (322)
T ss_pred -ccHHHHHHHHHHHH
Confidence 88888877655443
No 176
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.51 E-value=1.1 Score=35.21 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=28.1
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQG---HVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~G---H~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
|||+|+.-|-.+ .-.-..+|+.+-++|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688888666444 4457889999999999999999987654
No 177
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.83 E-value=4.3 Score=35.31 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
..||++.+.++..|-....-++..|..+|++|+++......+.+.+...+ .+.+++.+.--..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~------~~pd~v~lS~~~~----------- 146 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK------EKPLMLTGSALMT----------- 146 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH------cCCCEEEEccccc-----------
Confidence 46999999999999999999999999999999999998776666554432 3333443332110
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIA 134 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP 134 (468)
.....++++++.+++.+...++-++|.-... ....|+.+|.=
T Consensus 147 -------~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 147 -------TTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred -------cCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 0112245566666665422345566655433 34567777654
No 178
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.07 E-value=19 Score=30.05 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=59.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEE---EECC--cchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTV---VNTQ--FIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~---~~~~--~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
.-|.+++.++.|-....+++|-..+.+|++|.| +-+. ..+..+.+. .+++.+.....+..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~--------l~~v~~~~~g~~~~~~~---~ 71 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER--------LPNIEIHRMGRGFFWTT---E 71 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh--------CCCcEEEECCCCCccCC---C
Confidence 457788889999999999999999999999999 5553 112222221 15677777665433221 1
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
+..... ...+..++...+.+.. ..+|+||.|-...
T Consensus 72 ~~~~~~----~~a~~~~~~a~~~~~~----~~~dLlVLDEi~~ 106 (159)
T cd00561 72 NDEEDI----AAAAEGWAFAKEAIAS----GEYDLVILDEINY 106 (159)
T ss_pred ChHHHH----HHHHHHHHHHHHHHhc----CCCCEEEEechHh
Confidence 111111 2223333333333333 5699999997543
No 179
>PRK06849 hypothetical protein; Provisional
Probab=85.91 E-value=8.1 Score=37.72 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|+++++||++. +.....+.+|+.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 77889999884 2333688999999999999999988653
No 180
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.77 E-value=22 Score=30.62 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
...|.+++..+.|-....+++|-..+.+|++|.++---.... .+|....-....++.+.....++.... .+...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~---~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e 95 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW---STGERNLLEFGGGVEFHVMGTGFTWET---QDRER 95 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC---ccCHHHHHhcCCCcEEEECCCCCcccC---CCcHH
Confidence 467889999999999999999999999999999875432210 001000001114688887776543321 11111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
-....+..+....+.+.+ .++|+||-|-...
T Consensus 96 ----~~~~~~~~~~~a~~~l~~----~~ydlvVLDEi~~ 126 (191)
T PRK05986 96 ----DIAAAREGWEEAKRMLAD----ESYDLVVLDELTY 126 (191)
T ss_pred ----HHHHHHHHHHHHHHHHhC----CCCCEEEEehhhH
Confidence 112233334444444443 5699999997543
No 181
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.57 E-value=12 Score=32.47 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
-|+|+-..|-|-..-..+||..+..+|++|.++|.+.++-
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 3567777788999999999999999999999999998753
No 182
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.91 E-value=14 Score=33.48 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=58.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
||||+.-==|. |.--+..|+++|.+. |+|+++.+...+....... ....++++..+..+. -. ....+.+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai-----t~~~pl~~~~~~~~~--~~-v~GTPaDc 70 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL-----TLTRPLRVEKVDNGF--YA-VDGTPTDC 70 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc-----cCCCCeEEEEecCCe--EE-ECCcHHHH
Confidence 46666532222 233477899999988 7999999877655443321 122455555543210 00 11122222
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec----------CCcc---cHHHHHHHhCCceEEEcc
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD----------VTVG---SALEVAESMGIARAAVVP 140 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 140 (468)
... -+..+.. .+||+||+- .+.+ ++..-|...|||.+.++.
T Consensus 71 V~~-----------gl~~l~~----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 71 VHL-----------ALNGLLD----PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHH-----------HHHhhcc----CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 111 1222221 359999874 3333 334455677999999874
No 183
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.66 E-value=12 Score=32.49 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+=|+|...|+.|-......||++|.+++|+|..++.+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 34577888999999999999999999999999887764
No 184
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=84.27 E-value=26 Score=30.07 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCEEEEEc---CCC-ccCh-HHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCC
Q 012212 4 QPHVLVIP---YPA-QGHV-APLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPD 69 (468)
Q Consensus 4 ~~~Il~~~---~~~-~GH~-~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ 69 (468)
|.||.++. .|+ +|=+ .-.-.|+..|+++||+||+++.......-. ....+++...+|.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--------~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE--------FEYNGVRLVYIPA 63 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC--------cccCCeEEEEeCC
Confidence 45777763 233 2333 345677888888999999999876543222 3337788888874
No 185
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.03 E-value=10 Score=36.88 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
+..|+++-.=|.|-..-+-.||+.|.++|+.|.+++.+.++...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 45577888889999999999999999999999999999887544
No 186
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.72 E-value=15 Score=34.45 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=38.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
--|||+-.-|.|-..-...||..|.+.|+.|.++..+.|+...
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 3467888899999999999999999999999999999997543
No 187
>PRK12342 hypothetical protein; Provisional
Probab=83.33 E-value=25 Score=31.92 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=24.6
Q ss_pred CceEEEecCCcc------cHHHHHHHhCCceEEEcc
Q 012212 111 PIRCVIADVTVG------SALEVAESMGIARAAVVP 140 (468)
Q Consensus 111 ~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~ 140 (468)
.||||++...+. -+..+|+.||+|++.+..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 399999976555 378999999999998664
No 188
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.11 E-value=6.7 Score=35.67 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
|||+++. +.|. -..||+.|.++||+|+..+.....
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 4677764 3342 568999999999999988876543
No 189
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.01 E-value=9.8 Score=34.91 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCceE-EcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccc
Q 012212 332 NRGKI-VEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 332 ~nv~~-~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P 377 (468)
.++.+ .+-.+-.+++.+++. |||-.+. +-.||+.+|+|+++++
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEec
Confidence 34444 477888899977765 8888554 6789999999999986
No 190
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=83.01 E-value=1.9 Score=41.82 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC--CCcc
Q 012212 331 SNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE--NGII 407 (468)
Q Consensus 331 ~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~--~~~~ 407 (468)
.++++.+ +..+..++|..+++ +||=- ...+.|.++.++|+|....-.|+.... . |.-......- .-.-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 4666766 55567889966655 99986 457899999999999887666555222 1 3332221110 0125
Q ss_pred CHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 012212 408 TRQEIQRKVLTLLKNDD-IRSNSLKLKEVARKSLLGGGSSFRNFESF 453 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~-~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (468)
+.++|.++|..++++.. ++++-++..+++.. ..+|.++.+-++.+
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYI 367 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHH
Confidence 68999999999887665 66777777777766 34455554444443
No 191
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.93 E-value=6.5 Score=36.16 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=69.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcC--CCCCCCcC-CCCCH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIP--DGLELQAA-DREDP 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~-~~~~~ 81 (468)
..|.+.-.|+-|--.-.-+|.+.|.++||+|-++.-++...+-..+ ..++.++...+. ++..-... .....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs------iLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS------ILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc------ccccHhhHHhhccCCCeEEeecCCCccc
Confidence 4566888999999999999999999999999999988765443221 111222222211 11100000 11111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcc
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVP 140 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~ 140 (468)
.. + .....+++..+... .+|+||++.... .=..+++...+=.++..+
T Consensus 126 GG----l----S~at~~~i~~ldAa----G~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 126 GG----L----SRATREAIKLLDAA----GYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred hh----h----hHHHHHHHHHHHhc----CCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 11 1 12234455555554 499999998766 334577777766655544
No 192
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=82.91 E-value=5.8 Score=35.58 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=28.6
Q ss_pred CEEEEEcCCCcc-ChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 5 PHVLVIPYPAQG-HVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 5 ~~Il~~~~~~~G-H~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
||||+.- -.| |---+.+|+++|. .+++|+++.+...+....
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s 42 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGAS 42 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCcccc
Confidence 4566553 222 4444778899998 999999999987765553
No 193
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=82.79 E-value=18 Score=38.21 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=61.2
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 6 HVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 6 ~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
.|++.+.. ..|-..-.++|++.|.++|++|-++-+-... | . .....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~-----------------------p--~--------~~~~~ 50 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP-----------------------P--L--------TMSEV 50 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC-----------------------C--C--------CHHHH
Confidence 56655444 4599999999999999999999998752210 0 0 00000
Q ss_pred HHHHHH-HhhHHHHHHHHHHhhCCCCCCceEEEecCCccc---------HHHHHHHhCCceEEEcccch
Q 012212 85 GESVAR-AMRGCLRDLIEKINQSNDCEPIRCVIADVTVGS---------ALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 85 ~~~~~~-~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~---------~~~~A~~lgiP~v~~~~~~~ 143 (468)
...+.. .....++.+++.+.... .+.|+||+|...+. ...+|+.++.|++.+...-.
T Consensus 51 ~~~~~~~~~~~~~~~I~~~~~~l~--~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 51 EALLASGQLDELLEEIVARYHALA--KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred HHHHhccCChHHHHHHHHHHHHhc--cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 000000 01122233333332221 45899998886531 35679999999999987643
No 194
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.71 E-value=38 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=26.0
Q ss_pred CccChHHHHHHHHHHH-HCCCEEEEEECCc
Q 012212 14 AQGHVAPLMKLATKIA-ERAIKVTVVNTQF 42 (468)
Q Consensus 14 ~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~ 42 (468)
-+|++-....||+.|+ ++||.|.+-+.+.
T Consensus 13 NyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 13 NYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred ccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 5799999999999999 5799999999865
No 195
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.54 E-value=2.2 Score=34.24 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
+||++...++.+=+. ...+.++|.++||+|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 578877777665555 999999999999999999998888777764
No 196
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=82.48 E-value=5.4 Score=35.33 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=36.7
Q ss_pred CEEEEEc-CCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIP-YPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.-|.|.+ -||-|-..-.+.||.+|+++|-.|+++=.++++.....
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 3455554 45669999999999999999999999999988766544
No 197
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=82.14 E-value=0.73 Score=45.46 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=47.3
Q ss_pred hHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012212 362 STMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLK 431 (468)
Q Consensus 362 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~ 431 (468)
++.||+++|+|+++. ++-.-+..|+. .--|...+..+ -....+++++.++.+|++++.+..+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 689999999999998 66666666666 25577776643 3445799999999999998766543
No 198
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=82.02 E-value=2.6 Score=36.34 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
.+.+||++--.++.|=+.-...+++.|.++||+|.++.++.....+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 3567887665555444444789999999999999999998765544
No 199
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.72 E-value=7.2 Score=33.76 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHH---HHHhhHHH
Q 012212 20 PLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESV---ARAMRGCL 96 (468)
Q Consensus 20 p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 96 (468)
-...+.+.+.++|-+|.|+++......+.+..+... ....+.-..++.. ..+........ ...-...+
T Consensus 44 ~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~--~~~~i~~rw~~G~-------LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 44 LALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT--GSFYVNGRWLGGT-------LTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc--CCeeecCeecCCc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 344455667778999999999865544433222110 0011111222222 22322222211 11111223
Q ss_pred HHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 97 RDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
+..+..++... ..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 115 ~k~~~g~~~~~--~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 115 EKNLGGIKDMF--RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHhcccccccc--cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 33333333332 6799977655333 566778889999999886543
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.46 E-value=2.9 Score=38.02 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
...++|+-.+|.|-..=..+||++|.++|+.|+|++.+.....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578999999999999999999999999999999999887766655
No 201
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=81.33 E-value=9.7 Score=38.75 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=49.1
Q ss_pred ChHHHhcCCCCCceee---ccCc-hhHHHhhhcCCceecccccc-chhhhHHHHHHHhh--ceeEeeccC--CCccCHHH
Q 012212 341 PQEKVLGHSSVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFS-DQYQNRNYICEAWK--IGLQFFADE--NGIITRQE 411 (468)
Q Consensus 341 p~~~ll~~~~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~lG--~g~~l~~~~--~~~~t~~~ 411 (468)
++.+++..+++ +|. +=|+ -++.||+++|+|+|+....+ .... ..+... | .|+.+...+ +-.-+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 46677755555 766 3454 58999999999999985421 1111 112111 2 466665322 11135788
Q ss_pred HHHHHHHHhcChHHHHHH
Q 012212 412 IQRKVLTLLKNDDIRSNS 429 (468)
Q Consensus 412 l~~ai~~~l~~~~~r~~a 429 (468)
|++++.++++. +.|++.
T Consensus 542 La~~m~~~~~~-~~r~~~ 558 (590)
T cd03793 542 LTQYMYEFCQL-SRRQRI 558 (590)
T ss_pred HHHHHHHHhCC-cHHHHH
Confidence 99999998854 434433
No 202
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.18 E-value=17 Score=34.70 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=37.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
.-|+|+-.-+.|-..-+..+|..+.++|+.+-+++.+.|+..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 446688888999999999999999999999999999988653
No 203
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=81.15 E-value=6 Score=39.09 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|.++||||++-.+++-| +||+.|.+-++-..+++.|.+
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 78899999998888877 799999999866566665554
No 204
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=80.61 E-value=2.2 Score=36.07 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|||.++.-.+. +- ..|+++..+|||+||-++-...
T Consensus 1 mKIaiIgAsG~--~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGK--AG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCch--hH--HHHHHHHHhCCCeeEEEEeChH
Confidence 67887764443 22 3688999999999999997553
No 205
>PRK05973 replicative DNA helicase; Provisional
Probab=80.36 E-value=20 Score=32.18 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
-+++...||.|-..-.+.+|...+++|+.|.|++.+...+.+...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 356778889999999999999998999999999998776655543
No 206
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=80.02 E-value=18 Score=36.13 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCEEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|.+|++.... +.|-..-...|++.|+++|++|..+-+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 4466666443 4589999999999999999999988764
No 207
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=79.99 E-value=5.4 Score=29.91 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHH
Q 012212 21 LMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLI 100 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 100 (468)
++.+|+.|.+.||++ +.++.....+.+. ++....+-......+...++. .++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~----------Gi~~~~v~~~~~~~~~~~g~~----------------~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH----------GIEVTEVVNKIGEGESPDGRV----------------QIM 53 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT----------T--EEECCEEHSTG-GGTHCH----------------HHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc----------CCCceeeeeecccCccCCchh----------------HHH
Confidence 478999999999665 5666667778774 466444432211110001011 444
Q ss_pred HHHhhCCCCCCceEEEecCCccc---------HHHHHHHhCCceE
Q 012212 101 EKINQSNDCEPIRCVIADVTVGS---------ALEVAESMGIARA 136 (468)
Q Consensus 101 ~~l~~~~~~~~pDlvi~D~~~~~---------~~~~A~~lgiP~v 136 (468)
+.+++ .+.|+||..+-... ...+|..++||++
T Consensus 54 ~~i~~----~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKN----GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHT----TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHc----CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 45544 56999998865441 1357888899976
No 208
>PHA02542 41 41 helicase; Provisional
Probab=79.85 E-value=16 Score=36.66 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=35.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++..-|+.|-..-.+.+|...++.|+.|.|++-.-..+.+..
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAK 235 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 4567888999999999999999999999999998876664433
No 209
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=79.43 E-value=16 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.4
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 7 VLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 7 Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|++. +..+.|-..-...|++.|.++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 3444 33355999999999999999999998876
No 210
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=79.07 E-value=23 Score=26.12 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 21 LMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
+..+|+.|++.|++| ++|. .....+.+.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC
Confidence 468999999999999 3555 445666663
No 211
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=78.90 E-value=16 Score=36.06 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=35.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 45667789999999999998887 77999999998876655544
No 212
>PRK08506 replicative DNA helicase; Provisional
Probab=78.75 E-value=13 Score=37.22 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=36.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|...++.|+.|.|++..-..+.+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 4566788999999999999999889999999999877665554
No 213
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=78.73 E-value=5.8 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=16.2
Q ss_pred ChHHHHHHHHHHHH-CCCEEEEE
Q 012212 17 HVAPLMKLATKIAE-RAIKVTVV 38 (468)
Q Consensus 17 H~~p~~~LA~~L~~-rGH~Vt~~ 38 (468)
|.....+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 77888999999988 55544444
No 214
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=78.64 E-value=22 Score=35.16 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=22.7
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|... -+..+|+.+|||++.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 5799999983 36779999999999865
No 215
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.04 E-value=8 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=36.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|+++.+.+..-|-.-+.-||..|.++||+|.++-.....+.+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 78899999999999999999999999999999966654444443
No 216
>PRK10867 signal recognition particle protein; Provisional
Probab=77.58 E-value=31 Score=34.15 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=36.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKI 47 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i 47 (468)
-|+|+..+|.|-..-...||..|.++ |++|.+++.+.++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 45677777889999999999999999 9999999999776543
No 217
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=77.50 E-value=23 Score=32.14 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
++|..-+|.|.......+|..++++|++|.++..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34556778899999999999999999999999988753
No 218
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=77.48 E-value=30 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.-|+|+-.+|.|-..-...||..|.++|++|.+++.+.++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34567777888999999999999999999999999988763
No 219
>PRK00784 cobyric acid synthase; Provisional
Probab=77.27 E-value=18 Score=36.62 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=28.0
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 6 HVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 6 ~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
.|++.... +.|-..-...|++.|.++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45555343 459999999999999999999987755
No 220
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=77.25 E-value=24 Score=31.56 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=34.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~~ 49 (468)
+++...++.|=..-+..++..++.. |+.|.|++.+...+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 3456667889999999998888877 999999999877665554
No 221
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=77.20 E-value=23 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
++.||++.+.+.-||-....-+++.|.+.|.+|.....-...+.+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v 56 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAV 56 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHH
Confidence 5789999999988999999999999999999999887765544443
No 222
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.94 E-value=53 Score=30.19 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=34.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.|+|+..+|.|-..-...||..|.++|++|.+++.+.++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 4557777788999999999999999999999999987543
No 223
>PRK14098 glycogen synthase; Provisional
Probab=76.94 E-value=3.9 Score=41.32 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYP------AQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+||||+|++.- ..|=-..+-+|.++|+++||+|.++.+..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 67999998532 23555567899999999999999999854
No 224
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=76.10 E-value=35 Score=26.57 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHH
Q 012212 17 HVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCL 96 (468)
Q Consensus 17 H~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (468)
+-.-+..+|+.|.+.|++|. +++...+.+.+.| +.+..+....... .. + .+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~g----------i~~~~v~~~~~~~--~~-~------------~~~i 63 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLENG----------IPVTPVAWPSEEP--QN-D------------KPSL 63 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHcC----------CCceEeeeccCCC--CC-C------------chhH
Confidence 55668899999999999983 4556666666633 4443332111100 00 0 0223
Q ss_pred HHHHHHHhhCCCCCCceEEEecCC---------cccHHHHHHHhCCceEE
Q 012212 97 RDLIEKINQSNDCEPIRCVIADVT---------VGSALEVAESMGIARAA 137 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~D~~---------~~~~~~~A~~lgiP~v~ 137 (468)
.++++. .++|+||.-+. .......|-.+|||++.
T Consensus 64 ~~~i~~-------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 64 RELLAE-------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHHHc-------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 334433 56999998543 23455688899999863
No 225
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=76.04 E-value=24 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.4
Q ss_pred cCCCccChHHHHHHHHHHHHCCCEEEEE
Q 012212 11 PYPAQGHVAPLMKLATKIAERAIKVTVV 38 (468)
Q Consensus 11 ~~~~~GH~~p~~~LA~~L~~rGH~Vt~~ 38 (468)
+.++.|-..-...||+.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456688999999999999999999986
No 226
>PRK05595 replicative DNA helicase; Provisional
Probab=75.94 E-value=6.2 Score=39.30 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=35.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHHh
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
+++...|+.|-..-.+.+|..++ +.|+.|.|++..-..+.+...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 45667789999999999998876 679999999998766555443
No 227
>PRK14099 glycogen synthase; Provisional
Probab=75.68 E-value=4.5 Score=40.81 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=61.6
Q ss_pred CCCc-eEEcccChHH-HhcCCCCCceee---ccCc-hhHHHhhhcCCceecccccc--chhhhHHHH---HHHhhceeEe
Q 012212 331 SNRG-KIVEWAPQEK-VLGHSSVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFS--DQYQNRNYI---CEAWKIGLQF 399 (468)
Q Consensus 331 ~~nv-~~~~~~p~~~-ll~~~~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rv---~~~lG~g~~l 399 (468)
++++ .+.+|-.... ++ .+.+++||. +=|. .+.+||+++|+|.|+....+ |.-...... ... +.|+.+
T Consensus 349 ~~~v~~~~G~~~~l~~~~-~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLI-QAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHH-HhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEe
Confidence 4555 3446633222 22 133455875 3444 47789999997766654321 221111000 011 367777
Q ss_pred eccCCCccCHHHHHHHHHH---HhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 400 FADENGIITRQEIQRKVLT---LLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 400 ~~~~~~~~t~~~l~~ai~~---~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
+. -+.+++.++|.+ +++|++.+++..+-+ .. ..=|-.+.+++.++..++.
T Consensus 427 ~~-----~d~~~La~ai~~a~~l~~d~~~~~~l~~~~---~~---~~fSw~~~a~~y~~lY~~l 479 (485)
T PRK14099 427 SP-----VTADALAAALRKTAALFADPVAWRRLQRNG---MT---TDVSWRNPAQHYAALYRSL 479 (485)
T ss_pred CC-----CCHHHHHHHHHHHHHHhcCHHHHHHHHHHh---hh---hcCChHHHHHHHHHHHHHH
Confidence 66 469999999987 677876555444322 11 1223345555555555443
No 228
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=75.39 E-value=21 Score=33.66 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=24.6
Q ss_pred CCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 4699876644333 667778999999999886544
No 229
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.26 E-value=49 Score=30.06 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=24.6
Q ss_pred CceEEEecCCcc------cHHHHHHHhCCceEEEccc
Q 012212 111 PIRCVIADVTVG------SALEVAESMGIARAAVVPF 141 (468)
Q Consensus 111 ~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (468)
.||||++-..+. -+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 399999976543 5678999999999987653
No 230
>PRK08006 replicative DNA helicase; Provisional
Probab=75.18 E-value=19 Score=36.08 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++-.-|+.|-..-.+.+|...+ +.|+.|.|++.+-..+.+..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~ 270 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMM 270 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 45668889999999999998887 46999999999866655543
No 231
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=74.53 E-value=7.6 Score=27.98 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=29.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
.-++++.-+...|...+..+|+.|.++|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45677777778999999999999999999988553
No 232
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.32 E-value=8.7 Score=33.50 Aligned_cols=107 Identities=12% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
..||++.+.++..|-....-++..|.++|++|+++......+.+.+...+ .+.+++.+.-..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~------~~~d~v~lS~~~------------ 143 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE------HKPDILGLSALM------------ 143 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------cCCCEEEEeccc------------
Confidence 56999999999999999999999999999999998877555555443221 233333333110
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceE
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARA 136 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v 136 (468)
......++++++.+++...+.++.+++.-... ....++.+|.=.+
T Consensus 144 ------~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~--~~~~~~~~GaD~~ 188 (201)
T cd02070 144 ------TTTMGGMKEVIEALKEAGLRDKVKVMVGGAPV--NQEFADEIGADGY 188 (201)
T ss_pred ------cccHHHHHHHHHHHHHCCCCcCCeEEEECCcC--CHHHHHHcCCcEE
Confidence 01122355666666655411234555555432 3457787775433
No 233
>PRK11519 tyrosine kinase; Provisional
Probab=74.09 E-value=80 Score=33.78 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCEEEEEc--CCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh-hhh-------hc-----------cCCCCCe
Q 012212 4 QPHVLVIP--YPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS-LQE-------KA-----------EDSSSQI 62 (468)
Q Consensus 4 ~~~Il~~~--~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~-~~~-------~~-----------~~~~~~i 62 (468)
..|+++++ .++.|-..-...||..|++.|++|.++-.+.....+... +.. .. ....+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 34666553 457799999999999999999999999765443322221 100 00 0011233
Q ss_pred EEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc----cHHHHHHHhCCceEEE
Q 012212 63 KLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG----SALEVAESMGIARAAV 138 (468)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~----~~~~~A~~lgiP~v~~ 138 (468)
.+.+. +. .+.+..+++ ....+.++++.++. ++|+||+|.-.. -+..++...+..++++
T Consensus 605 ~~lp~--g~-----~~~~~~ell------~s~~~~~ll~~l~~-----~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vv 666 (719)
T PRK11519 605 DLIPR--GQ-----VPPNPSELL------MSERFAELVNWASK-----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVA 666 (719)
T ss_pred EEEeC--CC-----CCCCHHHHh------hHHHHHHHHHHHHh-----cCCEEEEeCCCcccchHHHHHHHHCCeEEEEE
Confidence 33221 11 122333322 22346777777763 599999997544 2445677777666554
Q ss_pred c
Q 012212 139 V 139 (468)
Q Consensus 139 ~ 139 (468)
-
T Consensus 667 r 667 (719)
T PRK11519 667 R 667 (719)
T ss_pred e
Confidence 4
No 234
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=74.03 E-value=21 Score=32.52 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=35.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-++.+|..++.+ |+.|.|++.+-..+.+..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 3466778889999999999999987 699999999877665544
No 235
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.32 E-value=5.1 Score=38.71 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=34.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
+++.-.|+.|-..-++.+|..++++|.+|.+++.....+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 456677788999999999999999999999999876655544
No 236
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=73.17 E-value=61 Score=27.99 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCc-cChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQ-GHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~-GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.|.++-|+..|.. |-..-++.-++....+|-+|.++++.-
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3567777766644 999999999999999999999999853
No 237
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.85 E-value=24 Score=32.17 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHC---CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHH
Q 012212 20 PLMKLATKIAER---AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCL 96 (468)
Q Consensus 20 p~~~LA~~L~~r---GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (468)
-+.+|+++|.+. |++|+++.+...+....... .....+++..+.++. -. ....+.+..... +
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai-----T~~~pl~~~~~~~~~--ya-v~GTPaDCV~la-------l 79 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI-----SYTHPMMIAELGPRR--FA-AEGSPADCVLAA-------L 79 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc-----cCCCCeEEEEeCCCe--EE-EcCchHHHHHHH-------H
Confidence 356777878763 47999998876554443221 222456666554221 00 112222222211 1
Q ss_pred HHHHHHHhhCCCCCCceEEEe----------cCCcccHH---HHHHHhCCceEEEcc
Q 012212 97 RDLIEKINQSNDCEPIRCVIA----------DVTVGSAL---EVAESMGIARAAVVP 140 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~----------D~~~~~~~---~~A~~lgiP~v~~~~ 140 (468)
..++.. .+||+||+ |.+++++. .-|..+|||.+.++.
T Consensus 80 ~~~~~~-------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKD-------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCC-------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 122211 35999997 44444333 445677999999874
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.25 E-value=49 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=35.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
..|+|+-..|.|-..-...||..|..+|++|.+++.+.++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888888899999999999999999999999998775
No 239
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=72.22 E-value=7.4 Score=36.33 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+|.+|.|..-+|.|-..-...||..|+++|++|.++-.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 777777778777788999999999999999999999996544
No 240
>PRK08760 replicative DNA helicase; Provisional
Probab=72.17 E-value=21 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++...|+.|-..-.+.+|...+. .|+.|.|++..-..+.+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 456678899999999999998874 5999999998876654443
No 241
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=72.00 E-value=60 Score=27.47 Aligned_cols=98 Identities=10% Similarity=0.158 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEE---ECCc--chHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVV---NTQF--IHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADR 78 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~---~~~~--~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 78 (468)
+.-|.+++..+.|-..-.+++|-..+.+|++|.++ -+.. ....+.+ . .++.+.....++....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~-------~--~~~~~~~~g~g~~~~~--- 72 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE-------P--HGVEFQVMGTGFTWET--- 72 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH-------h--cCcEEEECCCCCeecC---
Confidence 34677888899999999999999999999999654 4331 1111111 1 2677887776554322
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV 121 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~ 121 (468)
.+..... ......+....+.+.+ .++|+||.|-..
T Consensus 73 ~~~~~~~----~~~~~~~~~a~~~l~~----~~~DlvVLDEi~ 107 (173)
T TIGR00708 73 QNREADT----AIAKAAWQHAKEMLAD----PELDLVLLDELT 107 (173)
T ss_pred CCcHHHH----HHHHHHHHHHHHHHhc----CCCCEEEehhhH
Confidence 1111111 1123334444444433 569999999754
No 242
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=71.87 E-value=5.9 Score=33.93 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|+||++.-.++.|=+. ...+.+.|.++|++|.++.++.....+..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4578777666555554 78999999999999999999887776653
No 243
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.69 E-value=11 Score=33.93 Aligned_cols=94 Identities=10% Similarity=0.154 Sum_probs=52.2
Q ss_pred CccEEEEEeccc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh----CCCce-EEcccC--h
Q 012212 273 IRSVVYVAFGSV---AVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV----SNRGK-IVEWAP--Q 342 (468)
Q Consensus 273 ~~~vv~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~nv~-~~~~~p--~ 342 (468)
+++.|.+..|+. ..++.+.+.++++.+.+.++++++..+.. . . .....+.. +.++. +.+-.. +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----E--Q-EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----H--H-HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----H--H-HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 445777777775 45688999999999988886655544433 1 0 11122222 22233 323333 2
Q ss_pred -HHHhcCCCCCceeeccCchhHHHhhhcCCceecc
Q 012212 343 -EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCW 376 (468)
Q Consensus 343 -~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~ 376 (468)
..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 457766665 8887 567788899999999988
No 244
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.67 E-value=3.3 Score=39.79 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=66.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGE 86 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (468)
||+---|+.|--.=+++++..|+++| +|.++++......+.-...+ +.. + ..+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~R--------L~~---~---------~~~------ 148 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADR--------LGL---P---------TNN------ 148 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHH--------hCC---C---------ccc------
Confidence 45556788899999999999999999 99999999887766543211 100 0 000
Q ss_pred HHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-c--------------------HHHHHHHhCCceEEEcc
Q 012212 87 SVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-S--------------------ALEVAESMGIARAAVVP 140 (468)
Q Consensus 87 ~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~--------------------~~~~A~~lgiP~v~~~~ 140 (468)
+.-..+..++++++.+.+ .+||++|+|..-. + ...+|+..||+.+.+.+
T Consensus 149 -l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 149 -LYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred -eEEehhcCHHHHHHHHHh----cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 001122235666666665 5699999997522 1 12578888999877653
No 245
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=71.65 E-value=6.2 Score=33.08 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=56.4
Q ss_pred EEEEEcCCCccChHH----HHHHHHHHHHC-CCEEEEEECCc---chHHHHHhhhhhccCCCCCe-EEEEcCCCCCCCcC
Q 012212 6 HVLVIPYPAQGHVAP----LMKLATKIAER-AIKVTVVNTQF---IHKKIIASLQEKAEDSSSQI-KLVTIPDGLELQAA 76 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p----~~~LA~~L~~r-GH~Vt~~~~~~---~~~~i~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~ 76 (468)
+|+++.-...|.+++ .+..|+.|++. |.+|+.++... ..+.+.+.... .+. +.+.+......
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~------~G~d~v~~~~~~~~~--- 71 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK------YGADKVYHIDDPALA--- 71 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS------TTESEEEEEE-GGGT---
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh------cCCcEEEEecCcccc---
Confidence 355555444555555 67889999864 78888888763 12221111110 112 23333211100
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcc
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVP 140 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~ 140 (468)
..+... ....+.+++++ .+||+|++-.... .+..+|.++|.|++.-..
T Consensus 72 -~~~~~~--------~a~~l~~~~~~-------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 72 -EYDPEA--------YADALAELIKE-------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -TC-HHH--------HHHHHHHHHHH-------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred -ccCHHH--------HHHHHHHHHHh-------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 001111 22223444444 3599999987655 566799999999987553
No 246
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=71.53 E-value=47 Score=32.94 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=36.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
..|+|+..+|.|-..-...||..|.++|++|.+++.+.++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 45678888899999999999999999999999999987754
No 247
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=71.33 E-value=43 Score=28.02 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.2
Q ss_pred cCCCCCceeeccCch------hHHHhhhcCCceeccc
Q 012212 347 GHSSVACFISHCGWN------STMEGLSMGVPFLCWP 377 (468)
Q Consensus 347 ~~~~~~~~I~hGG~~------s~~eal~~GvP~v~~P 377 (468)
+.+.+ +++|.|.| .+.+|...++|+|++.
T Consensus 62 g~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34544 88888854 7899999999999985
No 248
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=71.13 E-value=57 Score=26.84 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=73.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +....+++...|++.+..+-+.+... +..|+.+. .++. -+.+-.+++||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~---~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVK---EYEARGADVII 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHH---HTTTTTESEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHH---HhccCCCEEEE
Confidence 3555567753 67788899999998886655554433 33444332 1111 12222334588
Q ss_pred eccCc----hhHHHhhhcCCceeccccccchhhhHHH---HHHHh-hceeEeeccCCCccCHHHHHHHHHHHhcChHHHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSDQYQNRNY---ICEAW-KIGLQFFADENGIITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~DQ~~na~r---v~~~l-G~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
.=.|. .++..++- -+|+|.+|...++.....- +.... |+++..-.- ++-.++-.++-.|-. +.|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LKDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cCCHHHHH
Confidence 87775 34554444 7999999987665433321 11101 554333210 011445555555533 36789999
Q ss_pred HHHHHHHHHHH
Q 012212 428 NSLKLKEVARK 438 (468)
Q Consensus 428 ~a~~l~~~~~~ 438 (468)
+.+..++++++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999888776
No 249
>PRK06921 hypothetical protein; Provisional
Probab=71.08 E-value=82 Score=28.87 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEEC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNT 40 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~ 40 (468)
..++|+..+|.|-..=..++|++|.++ |+.|.|++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 457888888888888888999999988 999999885
No 250
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.89 E-value=8.5 Score=32.74 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=23.3
Q ss_pred cCCCCCceeeccCchhHHHhhhcCCceecccccc
Q 012212 347 GHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 347 ~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~ 380 (468)
.+..++++|+.||......... ++|+|-++...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4577788999999999998888 99999998643
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=70.52 E-value=40 Score=32.05 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=35.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
..|+|+..+|.|-..-...||..|.++|++|.+++.+.++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35678888899999999999999999999999998876643
No 252
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=70.47 E-value=8.3 Score=33.06 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~ 49 (468)
|+||++.-.++.| .+-...|++.|.+ .||+|.++.++.....+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 4578766666666 6668999999999 5999999999888777764
No 253
>PRK06321 replicative DNA helicase; Provisional
Probab=70.27 E-value=17 Score=36.48 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=34.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++..-|+.|-..-.+.+|...+ +.|+.|.|++..-..+.+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 45678889999999999999987 46999999999876655544
No 254
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=70.05 E-value=60 Score=32.10 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~ 46 (468)
-|+|+..+|.|-..-...||..|. ++|++|.+++.+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 356777778899999999999997 68999999999977654
No 255
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=69.83 E-value=62 Score=34.44 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=97.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCC------------------------CCCcccCCchhHHHHh
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDF------------------------MNGSRAKFPDGFIERV 330 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~ 330 (468)
.++|+++=.+...+.......++.|.+.|.+++++++... .+++...+++.-.+..
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 3788877666666777778888888888888888887661 1112222333322333
Q ss_pred CCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCH
Q 012212 331 SNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITR 409 (468)
Q Consensus 331 ~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~ 409 (468)
..++.++ +--||-.+ -+.|+|..-.=++.+ ++|.-.-|-.+..+ -+|+...... .
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~~G-----T 707 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGISG-----T 707 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecCCc-----c
Confidence 3444444 33344322 266777766666655 78888888888887 8898887432 2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 410 QEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 410 ~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
+.=.+|-+=+|.|+++.. +-+|++||-+-+.++.+||+.+.
T Consensus 708 dVaKeAsDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 708 DVAKEASDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred HhhHhhhhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 333456667888888754 33456677778899999998776
No 256
>PRK08840 replicative DNA helicase; Provisional
Probab=69.80 E-value=28 Score=34.81 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHHh
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
|++-.-|+.|-..-.+.+|...+ +.|+.|.|++.+-..+.+...
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~R 264 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMR 264 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHH
Confidence 45667889999999999999987 469999999998776655443
No 257
>PRK11823 DNA repair protein RadA; Provisional
Probab=69.49 E-value=7.1 Score=38.85 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=35.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
+++.-.|+.|-..-+..+|..+.++|++|.+++.....+.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 457777888999999999999999999999999987666554
No 258
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.02 E-value=8.8 Score=35.08 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCceeeccCchhHHHhhh------cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLS------MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+-||=||+..++. .++|++.+- .|-.--..+ ++.+++.+++++++++.
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN-----------------~G~lGFL~~---~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVH-----------------TGHLGFYTD---WRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEe-----------------CCCceeccc---CCHHHHHHHHHHHHcCC
Confidence 356999999999999986 488988773 222112223 66788888888888643
No 259
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=69.01 E-value=44 Score=28.51 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=23.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCE--EEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIK--VTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~--Vt~~~~~ 41 (468)
|||+|+.++.. ..+..+.++|.+++|+ |.++.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecc
Confidence 68988854443 6677888999999997 4444443
No 260
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.87 E-value=12 Score=29.55 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=37.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
||++.+.++..|-.-..-++..|..+|++|++.......+.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 68899999999999999999999999999999998765554433
No 261
>PRK07206 hypothetical protein; Provisional
Probab=68.87 E-value=19 Score=35.54 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=24.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++++-.... -..+++++.++|+++.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 7888764322 3468999999999999988764
No 262
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=68.69 E-value=53 Score=32.40 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=23.3
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
.+||++|.. ..+..+|+++|||++.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 569999988 4477899999999988664
No 263
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=68.67 E-value=52 Score=27.82 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-hHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-HKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
+..|.+++..+.|-....+.+|-.-+-+|.+|.++---.. ...-+-... ....++.+.....++.... . ..
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----~~l~~~~~~~~g~~f~~~~--~--~~ 74 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----KKLPNVEIERFGKGFVWRM--N--EE 74 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----GGGT--EEEE--TT----G--G--GH
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----HhCCeEEEEEcCCcccccC--C--Cc
Confidence 4567788989999999888888777788888888765333 111111111 1115577877776544332 1 11
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV 121 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~ 121 (468)
. .. ....+..++...+.+.. .++|+||.|-..
T Consensus 75 ~--~~-~~~~~~~~~~a~~~i~~----~~~dlvILDEi~ 106 (172)
T PF02572_consen 75 E--ED-RAAAREGLEEAKEAISS----GEYDLVILDEIN 106 (172)
T ss_dssp H--HH-HHHHHHHHHHHHHHTT-----TT-SEEEEETHH
T ss_pred H--HH-HHHHHHHHHHHHHHHhC----CCCCEEEEcchH
Confidence 1 11 33344445555555443 569999999643
No 264
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=68.16 E-value=26 Score=35.34 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=39.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
-+++...|+.|-..-.+.++.+.+++|.+|.+++.....+.+...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 467778889999999999999999999999999999887776654
No 265
>PRK09165 replicative DNA helicase; Provisional
Probab=68.16 E-value=38 Score=34.32 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=34.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC---------------CCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAER---------------AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~r---------------GH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|...+.+ |..|.|++..-..+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4567788999999999998888753 889999999877765544
No 266
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.91 E-value=23 Score=30.15 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=36.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++.-.|+.|-..-...++.+.++.|..|.|++.....+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 5677788899999999999999999999999999877766544
No 267
>PRK06904 replicative DNA helicase; Validated
Probab=67.71 E-value=29 Score=34.80 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=35.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHHh
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~~ 50 (468)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+...
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~R 268 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMR 268 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 456678899999999999998874 59999999998776655543
No 268
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=67.08 E-value=40 Score=30.12 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVI-ADVTVG-SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (468)
.-||+++ +|+..- -+..=|..+|||+|.+..+..
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3488865 565444 667778999999999886544
No 269
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=66.93 E-value=13 Score=37.15 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=35.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
+++.-.|+.|-..-++.+|..+.++|++|.|++.....+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 456677788999999999999999999999999887665554
No 270
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=66.92 E-value=56 Score=25.07 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=52.6
Q ss_pred cChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHH
Q 012212 16 GHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGC 95 (468)
Q Consensus 16 GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (468)
++-.-+..+++.|.+.|+++. +++...+.+.+ .++.+..+.... . ..+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~----------~gi~~~~v~~~~-------~------------~~~~ 58 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQE----------AGIPVEVVNKVS-------E------------GRPN 58 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHH----------cCCeEEEEeecC-------C------------Cchh
Confidence 466778899999999999993 44456667766 345544433210 0 1122
Q ss_pred HHHHHHHHhhCCCCCCceEEEecCCc-------ccHHHHHHHhCCceEE
Q 012212 96 LRDLIEKINQSNDCEPIRCVIADVTV-------GSALEVAESMGIARAA 137 (468)
Q Consensus 96 ~~~ll~~l~~~~~~~~pDlvi~D~~~-------~~~~~~A~~lgiP~v~ 137 (468)
+.++++. .++|+||.-+.. ......|-.+|||++.
T Consensus 59 i~~~i~~-------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 59 IVDLIKN-------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHc-------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 3333333 569999985422 3455678889999885
No 271
>PRK05920 aromatic acid decarboxylase; Validated
Probab=66.66 E-value=11 Score=32.99 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
++||++--.++. ..+-...+.+.|.+.||+|+++.+......+..
T Consensus 3 ~krIllgITGsi-aa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGAS-GAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 457776654444 446888999999999999999999887776653
No 272
>PRK13768 GTPase; Provisional
Probab=66.37 E-value=13 Score=33.88 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.+++...+|.|-..-...++..|.++|++|.++..++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45666677779999999999999999999999987653
No 273
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=65.93 E-value=20 Score=34.48 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=25.1
Q ss_pred HhcCCCCCceeeccCchh---HHHhhhcCCceecc
Q 012212 345 VLGHSSVACFISHCGWNS---TMEGLSMGVPFLCW 376 (468)
Q Consensus 345 ll~~~~~~~~I~hGG~~s---~~eal~~GvP~v~~ 376 (468)
++..-+-+++|++||+-| +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344333345999999986 89999999999876
No 274
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=65.46 E-value=69 Score=29.71 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEE-EcCCCCCCCcCCCC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLV-TIPDGLELQAADRE 79 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 79 (468)
|.++|+-+.++.-+.-..-=...+++.|.++|.+|.=++..... .. ......+. .+|.+.+ ..
T Consensus 1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~-----~~------~~F~m~~~~~~p~~~~-----~~ 64 (286)
T PRK13011 1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR-----LS------GRFFMRVEFHSEEGLD-----ED 64 (286)
T ss_pred CCCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC-----CC------CeEEEEEEEecCCCCC-----HH
Confidence 66555555555555555556778999999999888877764111 00 00112211 1232211 11
Q ss_pred CHHHHHHHHHHH----------------------hhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 80 DPLKLGESVARA----------------------MRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 80 ~~~~~~~~~~~~----------------------~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
.+.+.+..+.+. ....++++++.++....+.+.-+||+|.-. ...+|+.+|||++.
T Consensus 65 ~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~--~~~lA~~~gIp~~~ 142 (286)
T PRK13011 65 ALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD--LEPLAAWHGIPFHH 142 (286)
T ss_pred HHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc--HHHHHHHhCCCEEE
Confidence 112222222111 124578888877655433556778887532 44559999999987
Q ss_pred Ec
Q 012212 138 VV 139 (468)
Q Consensus 138 ~~ 139 (468)
+.
T Consensus 143 ~~ 144 (286)
T PRK13011 143 FP 144 (286)
T ss_pred eC
Confidence 64
No 275
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=65.23 E-value=89 Score=26.82 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=62.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch-----HHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH-----KKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDP 81 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~-----~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (468)
|.+++..+.|-....+.+|-.-.-+|.+|.++---... ..... ..+..+.|+.+++++....-....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~-------~~~~~v~~~~~~~g~tw~~~~~~~- 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE-------KFGLGVEFHGMGEGFTWETQDREA- 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH-------hhccceeEEecCCceeCCCcCcHH-
Confidence 66788889999998888888888888888776432211 12211 112679999999887765311111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
+. ......++...+.+.+ .++|+||.|-+..
T Consensus 103 -d~-----~aa~~~w~~a~~~l~~----~~ydlviLDEl~~ 133 (198)
T COG2109 103 -DI-----AAAKAGWEHAKEALAD----GKYDLVILDELNY 133 (198)
T ss_pred -HH-----HHHHHHHHHHHHHHhC----CCCCEEEEehhhH
Confidence 11 3344445555555554 5799999997654
No 276
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=65.16 E-value=46 Score=33.04 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=35.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|..++. .|+.|.|++.+-..+.+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 456677888999999999998875 6999999999977766644
No 277
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=65.13 E-value=35 Score=32.72 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=38.9
Q ss_pred eeeccCchhHHHhhhcCCceec--cccccch------hhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 354 FISHCGWNSTMEGLSMGVPFLC--WPYFSDQ------YQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 354 ~I~hGG~~s~~eal~~GvP~v~--~P~~~DQ------~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
+-|+ |..++..|+.+|.|+-. ++..+|- -.|+.++.+.+-....+ .+.+++..+|.++++|++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvv-------V~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVV-------VEDDEIAAAILRLFEDEK 318 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEE-------eccHHHHHHHHHHHHhhh
Confidence 4555 67789999999998731 2222222 23444444321223233 778899999999998776
No 278
>PRK07773 replicative DNA helicase; Validated
Probab=65.06 E-value=48 Score=36.38 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=35.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHHh
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~~ 50 (468)
|++..-|+.|-..-.+.+|...+. .|..|.|++..-..+.+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 567788899999999999998875 48999999998776665543
No 279
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.84 E-value=14 Score=32.30 Aligned_cols=95 Identities=19% Similarity=0.107 Sum_probs=55.1
Q ss_pred cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-hHHHHHhhh-hhc-c--CCCCCeEEEEcCCCCCCCcCCCCCHHHHH
Q 012212 11 PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-HKKIIASLQ-EKA-E--DSSSQIKLVTIPDGLELQAADREDPLKLG 85 (468)
Q Consensus 11 ~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-~~~i~~~~~-~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (468)
--.+.|--.-++.++..+...||+|+++++... ++.+.++-. .+. . .....+.|.++. ..+ .
T Consensus 35 Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~--~~~-----------~ 101 (235)
T COG2874 35 GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVN--LEP-----------V 101 (235)
T ss_pred CCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEec--ccc-----------c
Confidence 334668888899999999999999999999854 344443210 000 0 000122222221 111 1
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 86 ESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 86 ~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
+.-.+..+..++.+++.++. ++-|+||.|.+..
T Consensus 102 ~~~~~~~~~~L~~l~~~~k~----~~~dViIIDSls~ 134 (235)
T COG2874 102 NWGRRSARKLLDLLLEFIKR----WEKDVIIIDSLSA 134 (235)
T ss_pred ccChHHHHHHHHHHHhhHHh----hcCCEEEEecccH
Confidence 11123344556666666653 5689999998765
No 280
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=64.81 E-value=1.1e+02 Score=27.90 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..|++.+ +.++.|-..-...||..|++.|++|.++=..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3555544 3346688888999999999999999998654
No 281
>PRK08116 hypothetical protein; Validated
Probab=64.77 E-value=49 Score=30.35 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
++|...+|.|-..=..++|++|.++|+.|.+++.+.....+.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 667777777877778889999999999998888655444443
No 282
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=64.64 E-value=82 Score=30.23 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCCc-cChHHHHHHHHHHHHCC--CEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC
Q 012212 1 MSRQPHVLVIPYPAQ-GHVAPLMKLATKIAERA--IKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD 77 (468)
Q Consensus 1 m~~~~~Il~~~~~~~-GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 77 (468)
|.+.|+++..|..-. |. .-+..|.+.+.+.| .+|.+++.+...+...+...+...... .+.....+
T Consensus 1 ~~~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~~~~--------- 69 (350)
T PRK00843 1 MFEKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-DVEVVIVD--------- 69 (350)
T ss_pred CCCCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEEeCC---------
Confidence 667788887776533 43 33566777777666 588888877654432221111110111 22221111
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcccch
Q 012212 78 REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 143 (468)
. ...+.+.++++.+++. ++|+||.=.-.. .+-.+|...|+|+|.+-|...
T Consensus 70 ~------------~t~~~v~~~~~~~~~~----~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~~ 122 (350)
T PRK00843 70 E------------ATMEEVEKVEEKAKDV----NAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAAS 122 (350)
T ss_pred C------------CCHHHHHHHHHHhhcc----CCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 0 1112345555555543 489998544322 344567888999999887653
No 283
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.62 E-value=49 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.... ...+|+.+|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 46999999854 6789999999998765
No 284
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=64.42 E-value=85 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=30.5
Q ss_pred CEEE-EE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVL-VI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il-~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
++|+ |. .-+|.|-..-...||..|+.+|++|.++=.++.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4555 43 345779999999999999999999998855543
No 285
>CHL00067 rps2 ribosomal protein S2
Probab=64.39 E-value=31 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=25.0
Q ss_pred CCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 4588877655443 566778899999999886554
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=63.53 E-value=18 Score=33.52 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-C-CEEEEEECCcch
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER-A-IKVTVVNTQFIH 44 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r-G-H~Vt~~~~~~~~ 44 (468)
.|+|+-..|.|-..-...||..+..+ | ++|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45566666779999999999999977 6 999999998864
No 287
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=63.46 E-value=34 Score=34.44 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=69.3
Q ss_pred ceEEcccChHHH---hcCCCCCceee---ccCchhH-HHhhhcCC----ceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 334 GKIVEWAPQEKV---LGHSSVACFIS---HCGWNST-MEGLSMGV----PFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 334 v~~~~~~p~~~l---l~~~~~~~~I~---hGG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
+.+.+.+|+.++ +.-++| ++. .-|+|-| .|.++++. |+|+--+.+ |. +. |.-++.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-
Confidence 344588888764 444554 554 3488754 59999987 555443221 11 33 556888887
Q ss_pred CCCccCHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 403 ENGIITRQEIQRKVLTLLKNDD--IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~--~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
.+.++++++|.++|+.+. -+++.+++.+..+.. +...=.+.++.++.+
T Consensus 433 ----~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSP 482 (487)
T ss_pred ----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhh
Confidence 679999999999998765 445555555555542 556667888887764
No 288
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.41 E-value=12 Score=34.76 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCceeeccCchhHHHhhhc----CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLSM----GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+-||=||+.+++.. ++|++.+-. . .+|- ..+ ++.+++.+++++++++.
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lGF---L~~---~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLGF---ITD---IPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Cccc---ccc---CCHHHHHHHHHHHHcCC
Confidence 4559999999999999774 678877621 0 1232 223 67888999999988643
No 289
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=63.22 E-value=40 Score=30.99 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=54.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
+=|++...|+.|-......|++.|.+.|.+|.+++..... +.. . .-.+. ..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~-----------~---------------~y~~~-~~ 52 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR-----------N---------------DYADS-KK 52 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT-----------S---------------SS--G-GG
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch-----------h---------------hhhch-hh
Confidence 3477888999999999999999999999999999853322 111 0 00000 11
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc------cHHHHHHHhCCceEEEcccchH
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG------SALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
.+.....+...++..+ . +-++||+|.... -...+|+..+.++..+......
T Consensus 53 Ek~~R~~l~s~v~r~l----s-----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 53 EKEARGSLKSAVERAL----S-----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHHHHHHHHHHHHH----T-----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred hHHHHHHHHHHHHHhh----c-----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 1222222333333332 2 248999998765 3346999999999877755543
No 290
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=63.14 E-value=57 Score=29.80 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~~ 49 (468)
-+++...++.|-..-...+|..++.. |+.|.|++.....+.+..
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTAR 76 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHH
Confidence 34566777889999999999998877 999999999766554443
No 291
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=63.02 E-value=21 Score=31.47 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
+..||++.+.++..|-....-++-.|..+|++|+++...-..+.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999999999999999999999876666555443
No 292
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=63.02 E-value=50 Score=29.20 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=36.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
-+++...|+.|-..-...++..-+++|+.|.+++.....+.+.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 3456677788998888888888778899999999998877665543
No 293
>PRK05636 replicative DNA helicase; Provisional
Probab=62.95 E-value=30 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=33.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++...|+.|-..-.+.+|...+ ++|..|.|++..-....+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 45667788899999999998776 56899999988876555443
No 294
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=62.93 E-value=1.3e+02 Score=28.41 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=34.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.|+|+..+|.|-..-+..||..|..+|++|.++..+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 456777778899999999999999999999999988764
No 295
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=62.70 E-value=1.2e+02 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.4
Q ss_pred CccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 14 AQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 14 ~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..|-..-..+|++.|.++|++|..+-+-
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4588889999999999999999987764
No 296
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=62.48 E-value=41 Score=31.88 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=56.3
Q ss_pred EEEEEcCCCcc---C--hHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 6 HVLVIPYPAQG---H--VAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 6 ~Il~~~~~~~G---H--~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
-|++.|..+.| + .--+..|++.|.++|++|.++.++...+........ .+-....
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~------~~~~~~~-------------- 235 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL------LPGELRN-------------- 235 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh------CCccccc--------------
Confidence 45565544333 2 225889999999899999998887655544332100 0000000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
+. ....+.++..-+. +.|++|+.- .+.+.+|..+|+|++.+..
T Consensus 236 -------l~--g~~sL~el~ali~------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 236 -------LA--GETSLDEAVDLIA------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -------CC--CCCCHHHHHHHHH------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 00 0011333333332 279999875 4578899999999998753
No 297
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.16 E-value=12 Score=35.01 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCceeeccCchhHHHhhhc----CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLSM----GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+=||=||+..+... ++|++.+- .|-.--..+ ++.+++.+++.+++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN-----------------~G~lGFLt~---~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTIN-----------------TGHLGFLTE---AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEe-----------------CCCCccccc---CCHHHHHHHHHHHHcCC
Confidence 45669999999999999774 78988872 221112223 67888999999998754
No 298
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=62.14 E-value=73 Score=31.79 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=27.6
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 7 VLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 7 Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++. +..+.|-..-..+|++.|.++|++|..+-+.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g 37 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG 37 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC
Confidence 4444 3334588999999999999999999998764
No 299
>PRK06988 putative formyltransferase; Provisional
Probab=62.07 E-value=81 Score=29.69 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
||||+|+..+. ......++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 47999995443 3456677888899998877665
No 300
>PRK07004 replicative DNA helicase; Provisional
Probab=61.77 E-value=1e+02 Score=30.86 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=34.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|..++ +.|+.|.|++..-..+.+..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~ 259 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAM 259 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 45677889999999999998876 56999999999877665544
No 301
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.62 E-value=14 Score=34.32 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=37.9
Q ss_pred CCCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+-||=||+..++. .++|++.+- .|-.--..+ ++.+++.+++++++++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt~---~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AGHLGFLTD---ITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CCCcccCCc---CCHHHHHHHHHHHHcCC
Confidence 3456999999999998766 378887772 222112233 67888899999988753
No 302
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=61.54 E-value=96 Score=25.94 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=34.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
+++.-.+|.|-......+|..|.++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567788899999999999999999999999999886653
No 303
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=61.36 E-value=1.1e+02 Score=26.60 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~ 41 (468)
|+||+++..+..+ .+.+|.+++.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs---~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGS---NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEec
Confidence 4789888765533 3446777777654 778776444
No 304
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=61.07 E-value=70 Score=24.69 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=25.0
Q ss_pred cChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 16 GHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 16 GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
++-.-++.+|+.|.+.||++. .++.....+.+.|
T Consensus 9 ~~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~G 42 (112)
T cd00532 9 HVKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADAG 42 (112)
T ss_pred ccHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHcC
Confidence 355678899999999999983 4455666777633
No 305
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.01 E-value=9.9 Score=36.09 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|..+|||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6678899999777665 37899999999999999885
No 306
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.96 E-value=15 Score=31.38 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
...++|+..+|.|-..=..++|+++.++|+.|.|++.+...+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 4578888888889888899999999999999999998776666543
No 307
>PRK05748 replicative DNA helicase; Provisional
Probab=60.95 E-value=23 Score=35.32 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=35.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-.+.+|...+ ++|+.|.|++..-..+.+..
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHH
Confidence 56678889999999999999887 56999999998877665544
No 308
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=60.88 E-value=55 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHHC
Q 012212 8 LVIPYPAQGHVAPLMKLATKIAER 31 (468)
Q Consensus 8 l~~~~~~~GH~~p~~~LA~~L~~r 31 (468)
+++-.++.||..=|+.|.+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344457889999999999999776
No 309
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.87 E-value=40 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhCCCCCCceEEEecCCccc---HHHHHHHhCCceEE
Q 012212 93 RGCLRDLIEKINQSNDCEPIRCVIADVTVGS---ALEVAESMGIARAA 137 (468)
Q Consensus 93 ~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~---~~~~A~~lgiP~v~ 137 (468)
....+.+++.|++ -++.+.|..+.+ +..+|+.+|||++.
T Consensus 137 ~~aM~~~m~~Lk~------r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKE------RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHH------CCeEEEcccccccchhhhhHhhcCCceee
Confidence 3456777888865 689999988773 34689999999876
No 310
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=60.83 E-value=88 Score=26.55 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=65.3
Q ss_pred EcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc--CCCCCHHHHHHH
Q 012212 10 IPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA--ADREDPLKLGES 87 (468)
Q Consensus 10 ~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (468)
-.-+|.|-..-...||..|+++|++|.++-.+.......-... . ...+..+..... ...-+.......
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFG---------V-YDILREGLENANAILKNFESQDIYQG 74 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTT---------C-HHHHTTSSHGHHCHHESCCHHHHHHH
T ss_pred cCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhc---------c-hhhccccceehhhhhhccchhhhhhh
Confidence 3556779999999999999999999999999765544443320 0 000000000000 000011111110
Q ss_pred HHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchH
Q 012212 88 VARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 88 ~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
--......++++++.+... .+|+||.|.-......+...+...-..+.+..+.
T Consensus 75 ~~~~~~~~l~~~l~~l~~~----~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~ 127 (195)
T PF01656_consen 75 EEYLDPELLREILESLIKS----DYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPD 127 (195)
T ss_dssp CHCHHHHHHHHHHHHHHHT----TSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESS
T ss_pred hhhhHHHHHHHHHHHhhhc----cccceeecccccccHHHHHHHHhCceeeeecCCc
Confidence 0002334577777776653 3999999987665555555555665555544443
No 311
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=60.53 E-value=12 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=21.4
Q ss_pred cChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 16 GHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 16 GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|=-.-+..|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445567899999999999999999866
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.18 E-value=1.4e+02 Score=29.05 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=33.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
|+|+...|.|-..-...||..+.++|++|.+++.+.++.
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 446665677999999999999999999999999988754
No 313
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=59.69 E-value=1.3e+02 Score=27.29 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCEEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhh
Q 012212 4 QPHVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQE 53 (468)
Q Consensus 4 ~~~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~ 53 (468)
..|..|+..- |.|-..-.-.||-.|+.-+|.|.++++++.+..-.+.+.+
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qk 68 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQK 68 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHH
Confidence 4577777544 5599999999999999999999999999988766665543
No 314
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=59.67 E-value=71 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 46999999964 5789999999998764
No 315
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=59.56 E-value=10 Score=32.50 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCEEEEEECCc
Q 012212 21 LMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
-..||+++..+||+||++.++.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4689999999999999999984
No 316
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=59.49 E-value=16 Score=31.31 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=32.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
||++--.++.|=+.-...+.+.|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6777666666666666799999999999999999876544
No 317
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.38 E-value=89 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++++++ |.|. .-+ ++|+.|+++||+|++.....
T Consensus 5 ~k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 3577666 3444 333 99999999999999987753
No 318
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=59.28 E-value=28 Score=33.13 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=58.3
Q ss_pred CEEEEEcCCCc-c----ChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 5 PHVLVIPYPAQ-G----HVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 5 ~~Il~~~~~~~-G----H~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
..|+|.|..+. . -..-+..|++.|.++|.+|.+..++...+..++.... +.....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~--------~~~~~~------------ 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG--------LPNAVI------------ 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh--------cCCccc------------
Confidence 46777776233 2 2336899999999999999998888444444332210 000000
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
+ .....+.++..-+. ..|++|+.- .+...+|..+|.|+|.+..
T Consensus 236 --------l--~~k~sL~e~~~li~------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 236 --------L--AGKTSLEELAALIA------GADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred --------c--CCCCCHHHHHHHHh------cCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 0 01111233333332 278988764 4578899999999999874
No 319
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.14 E-value=8.2 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+||.|+-.+..| .++|+.|.++||+|+++...
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeeccc
Confidence 6789999776555 48999999999999988643
No 320
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=58.96 E-value=51 Score=29.31 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 4699876644333 566778899999999886544
No 321
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=58.54 E-value=10 Score=36.21 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
||||.|+-.+..|. .+|..|+++||+|+++......+.+.+
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 36899997776653 678899999999999987543344443
No 322
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=57.93 E-value=6.8 Score=32.59 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
||.++..+..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466665555554 89999999999999999975
No 323
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.85 E-value=1e+02 Score=29.85 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=27.4
Q ss_pred CCCEEEEEc-CCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIP-YPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+++|+++- .+..|. .+|+.|.++||+|+++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 347888886 666664 68999999999999998643
No 324
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.74 E-value=73 Score=31.60 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=51.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
+|+.+.. .-.....+++.|.+.|-+|..+......+.... +..+ .....+..
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-----------------~~~~----~~~~~D~~-- 363 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-----------------LPVE----TVVIGDLE-- 363 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-----------------CCcC----cEEeCCHH--
Confidence 4555543 234667888888889988887777654332211 0000 00011111
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+.++++. .++|++|.+.. ...+|+.+|||++.+.
T Consensus 364 ----------~l~~~i~~-------~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 ----------DLEDLACA-------AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred ----------HHHHHHhh-------cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 12334433 46999999854 6789999999998754
No 325
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=57.45 E-value=41 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred EcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 10 IPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 10 ~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+-+|.|-..-...||..|+++|++|.++-.+.
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 355677999999999999999999999997654
No 326
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.40 E-value=48 Score=26.71 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=40.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
.+|++-+..+-+|-.--.-++..|.++|++|..+......+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999998776655544
No 327
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=57.36 E-value=1.5e+02 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+.|.+. +-+|.|-..-..+||..|+++|++|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3455544 4457799999999999999999999888654
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=57.29 E-value=98 Score=28.18 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
+++.-.|+.|-..-...+|...+++|..|.|++.....
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 56777789999999999999988899999999987544
No 329
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.17 E-value=30 Score=32.53 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+|||+++-.++.| ..+|..|++.||+|+++.... .+.+..
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 45899999777665 356788999999999999865 444544
No 330
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.10 E-value=16 Score=33.60 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 351 VACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
++++|+=||=||+..+.. .++|++.+-. . .+|-. .+ ++.+++.+++.+++++.+|
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~-------------G-~lGFL---~~---~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINR-------------G-NLGFL---TD---IDPKNAYEQLEACLERGEF 101 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------C-CCccc---cc---CCHHHHHHHHHHHHhcCCc
Confidence 455999999999998755 3688877721 0 13322 22 6678888888888874343
No 331
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=56.61 E-value=1.7e+02 Score=28.17 Aligned_cols=80 Identities=9% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHH
Q 012212 348 HSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 348 ~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
..+|++++-.+=......-+..-++-++--..+-=+..+.++... . ++..+|++.+.+=| ..||+
T Consensus 252 gERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~--------I-----L~~p~Lra~W~~El--~~Mr~ 316 (396)
T COG1448 252 GERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVAT--------I-----LNNPELRAEWEQEL--EEMRQ 316 (396)
T ss_pred hhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHH--------H-----hCCHHHHHHHHHHH--HHHHH
Confidence 356666655554444444444444444443333333333333321 1 45566666666555 36899
Q ss_pred HHHHHHHHHHHHhcC
Q 012212 428 NSLKLKEVARKSLLG 442 (468)
Q Consensus 428 ~a~~l~~~~~~~~~~ 442 (468)
+..+|+..|.+...+
T Consensus 317 Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 317 RILEMRQALVDALKA 331 (396)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988887666
No 332
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.49 E-value=18 Score=33.66 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+=||=||+..+.. .++|++.+-. - -+|- ..+ ++.+++.+++++++++.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGF---L~~---~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G------HLGF---LTQ---IPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEec--------C------CCeE---eec---cCHHHHHHHHHHHHcCC
Confidence 466999999999999875 3789888721 0 1222 223 67889999999999753
No 333
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.99 E-value=22 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|||.|.-=+|.|-..-...||.+|+++|++|.++=.++.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 568999999999999999999999999999998876554
No 334
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.92 E-value=19 Score=33.50 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+=||=||+..++. .++|++.+- .|-.--..+ ++.+++.+++++++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt~---~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGIN-----------------TGRLGFLAT---VSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------cCCCCcccc---cCHHHHHHHHHHHHcCC
Confidence 456999999999999877 378988772 222112223 67888899999998754
No 335
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=55.63 E-value=75 Score=32.33 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.+.. +..+|+.+|||++.+.
T Consensus 436 ~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 56999999853 6789999999998865
No 336
>PLN02939 transferase, transferring glycosyl groups
Probab=55.58 E-value=21 Score=38.72 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-----C-CccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 3 RQPHVLVIPY-----P-AQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il~~~~-----~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+.|||+|++. . ..|=-....+|.++|+++||+|.++++...
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 4599998843 2 234445678999999999999999999653
No 337
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=55.39 E-value=21 Score=34.95 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|.+++||++.-.++. ..+-...+.+.|.+.|++|.++.++.....+..
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 345678887665554 555778999999999999999999887777754
No 338
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.99 E-value=20 Score=33.55 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCCceeeccCchhHHHhhhc----CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLSM----GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+=||=||+..+... ++|++.+.. - .+|- ..+ +..+++.+++++++++.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGF---L~~---~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGF---LAE---AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCce---ecc---CCHHHHHHHHHHHHcCC
Confidence 34669999999999998764 889888732 0 1232 223 66788899999998754
No 339
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=54.95 E-value=21 Score=33.28 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=28.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|||+++-.+..| ..+|..|+++||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 578888666655 3678889999999999987443444443
No 340
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=54.91 E-value=35 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=20.6
Q ss_pred CceeeccCc------hhHHHhhhcCCceeccc
Q 012212 352 ACFISHCGW------NSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 352 ~~~I~hGG~------~s~~eal~~GvP~v~~P 377 (468)
.+++.+.|. +.+.+|-..++|+|++.
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 337777774 47789999999999985
No 341
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=54.86 E-value=1.3e+02 Score=25.53 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-----hHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-----HKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD 77 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-----~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 77 (468)
...-|.+++..+.|-....+.+|-.-+-+|.+|.++--=.. ...+.+. .+++.+.....+.....
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~--------~~~v~~~~~g~~~~~~~-- 89 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQL--------GQNLDWVRCDLPRCLDT-- 89 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHh--------CCCcEEEECCCCCeeeC--
Confidence 34567888999999999988888888888888887753221 2222221 14677777654432211
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc
Q 012212 78 REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV 121 (468)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~ 121 (468)
.+.... -....+..+....+.+.+ .++|+||-|-..
T Consensus 90 -~~~~~~---~~~~~~~~~~~a~~~l~~----~~~dlvVLDEi~ 125 (178)
T PRK07414 90 -PHLDES---EKKALQELWQYTQAVVDE----GRYSLVVLDELS 125 (178)
T ss_pred -CCcCHH---HHHHHHHHHHHHHHHHhC----CCCCEEEEehhH
Confidence 111100 112223333444444433 569999999654
No 342
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=54.55 E-value=29 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHH----------HHHHHhCCceEEEcc
Q 012212 90 RAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSAL----------EVAESMGIARAAVVP 140 (468)
Q Consensus 90 ~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~----------~~A~~lgiP~v~~~~ 140 (468)
+...+..+++++-+++ .+||++|+-+.+-.+. .+.+.++||.+.-..
T Consensus 63 en~eea~~~i~~mv~~----~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 63 ENKEEALKKILEMVKK----LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred hCHHHHHHHHHHHHHh----cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 3344445555555554 4699999999776222 356789999987553
No 343
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.50 E-value=76 Score=27.22 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=48.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchH-HHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHK-KIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
+++-+-..+.|-++...+|+++|.++ |+.|.+-++...-. .+.+... ..+...-+|- |..
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-------~~v~~~~~P~----------D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-------DRVDVQYLPL----------DFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-------GG-SEEE-------------SSH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-------CCeEEEEeCc----------cCH
Confidence 34444456789999999999999987 89998888754433 3333210 1222222331 111
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEc
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVV 139 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~ 139 (468)
. ..+..++. .+||++|.-.... .....|+..|||++.+.
T Consensus 85 ~-----------~~~rfl~~-------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 W-----------AVRRFLDH-------WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp H-----------HHHHHHHH-------H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred H-----------HHHHHHHH-------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 1 23444555 3488877655444 55567788899999876
No 344
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=54.44 E-value=20 Score=32.05 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q 012212 21 LMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
-..||++|.++||+|+++..+
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 367899999999999999754
No 345
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=54.23 E-value=74 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 4589876644333 566778899999999886544
No 346
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=54.13 E-value=31 Score=32.50 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.9
Q ss_pred EcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 10 IPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 10 ~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++.+|.|-.--.+.||++|++||..+-+++-+.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 367888999999999999999999999999765
No 347
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.93 E-value=3.1e+02 Score=29.44 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCEEEEEc--CCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 4 QPHVLVIP--YPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 4 ~~~Il~~~--~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
..|++.++ .++.|-..-...||..|+..|++|.++-.+....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~ 573 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG 573 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 35666554 3466888899999999999999999997765433
No 348
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=53.92 E-value=1.9e+02 Score=27.66 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=32.3
Q ss_pred EEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCcch
Q 012212 8 LVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQFIH 44 (468)
Q Consensus 8 l~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~~~ 44 (468)
+|...+|-|-..-...|++.|. ++|+.|.+++.+.+.
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 5667788899999999999997 699999999998765
No 349
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.79 E-value=21 Score=32.71 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCceeeccCchhHHHhhh-cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLS-MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+=||=||+..+.. ..+|++.+-. - .+| -..+ ++.+++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lG---FL~~---~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM--------G------GLG---FLTE---IEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCc---cCcc---cCHHHHHHHHHHHHcCC
Confidence 456999999999999987 4567766621 0 122 1223 67899999999999753
No 350
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=53.33 E-value=1.9e+02 Score=26.76 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+++|+++-.+..|. -+|+.|.++||.|.++..+........
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 356888888777775 589999999999999999888766655
No 351
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=53.31 E-value=82 Score=29.18 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 22 MKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 22 ~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
.++|..++++|++|.+++.++....-...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~~~~ 31 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLSDVF 31 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHHHHh
Confidence 47889999999999999998776544443
No 352
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=53.30 E-value=29 Score=28.81 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=26.8
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWV 309 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~ 309 (468)
.+|+++||.-..+.+.++..+.++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999997777788999999998877533333
No 353
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=53.26 E-value=71 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.7
Q ss_pred ceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 112 IRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 112 pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
.|++|+.- .+.+.+|..+|+|.|.+..
T Consensus 261 a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 261 ARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 79999884 5688999999999998763
No 354
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=53.24 E-value=16 Score=39.65 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|+++.+|+|+-.++.| +.+||+.|+++||+|+..=
T Consensus 1 ~~~~~~i~viG~G~sG----~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 1 MMKSLFYHFIGIGGIG----MSALAHILLDRGYSVSGSD 35 (809)
T ss_pred CCCcceEEEEEecHHh----HHHHHHHHHHCCCeEEEEC
Confidence 7888899999888766 7788999999999998744
No 355
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=53.18 E-value=23 Score=31.83 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+..++||++...-.-=..-+-+....|.++||+|++++-..
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT~ 48 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLTL 48 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEccC
Confidence 45688887765544445566777788899999999998653
No 356
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=53.15 E-value=1.8e+02 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLE 72 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 72 (468)
++||+++..++...-. .++.+|.++|.+|.++......+.. .....++...+|.+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~---------~~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER---------KSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc---------cchhhCCEEEECCCCC
Confidence 3689999888885443 5578888999999998764321110 1115688888888753
No 357
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=52.92 E-value=18 Score=30.98 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
|++--.++.|-+. ...|.+.|.++|++|.++.++.....+.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 4444444444444 4789999999999999999988877765
No 358
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=52.64 E-value=1.5e+02 Score=25.59 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=35.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc-chHHHHHh
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF-IHKKIIAS 50 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~-~~~~i~~~ 50 (468)
+++.-.++.|-..-++.++....++|..|.|++... ..+++.+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~ 59 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQI 59 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHH
Confidence 356677788999999999999999999999999985 45555543
No 359
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.49 E-value=24 Score=32.24 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=33.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.|.+..=+|-|...-...||..|+++|++|.++=.++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56888888888999999999999999999999885543
No 360
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=52.40 E-value=30 Score=28.88 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=34.3
Q ss_pred CCEEE-EEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 4 QPHVL-VIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 4 ~~~Il-~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
||+|+ |+-+-..|-..=+-+|.+.|.++||+|..+-.....
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 45666 777777899999999999999999999999886544
No 361
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.37 E-value=82 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceeeccCc------hhHHHhhhcCCceeccc
Q 012212 353 CFISHCGW------NSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 353 ~~I~hGG~------~s~~eal~~GvP~v~~P 377 (468)
+++.|+|. +.+.+|...++|+|++.
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 48888774 47889999999999985
No 362
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=52.36 E-value=1.1e+02 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCc
Q 012212 19 APLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 19 ~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..+-++...+.++|++|++++-..
T Consensus 12 l~~gg~i~~~~~~g~~v~vv~~t~ 35 (128)
T PF02585_consen 12 LGCGGTIAKLAEAGHRVVVVTLTD 35 (128)
T ss_dssp HHHHHHHHHHHHTT-EEEEEECE-
T ss_pred HhhHHHHHHHHhcCCeEEEEEecc
Confidence 356667778889999998887654
No 363
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=52.36 E-value=1.7e+02 Score=26.02 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.2
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 6 HVLVIP-YPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 6 ~Il~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.|.|.. -+|.|-..-...||..|+++|++|.++=.+...
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 455554 667799999999999999999999999887643
No 364
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.23 E-value=26 Score=32.04 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCceeeccCchhHHHhhhc-----CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLSM-----GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++++|+=||=||+..++.. .+|++.+-.. |-.--..+ ++.+++.+++.++++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL~~---~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFYCD---FHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEccc---CCHHHHHHHHHHHHcCC
Confidence 3559999999999999874 5676655210 21112233 67888999999988654
No 365
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.60 E-value=42 Score=30.82 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHH
Q 012212 19 APLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRD 98 (468)
Q Consensus 19 ~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (468)
.-+..|++.|.++|++|.++..+...+..+.... .+ + .. .... +.. ...+.+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~--------~~-----~----~~-----~~~~----~~~--~~~l~e 191 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAA--------AL-----G----GP-----RVVN----LAG--KTSLRE 191 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH--------hc-----C----CC-----cccc----CcC--CCCHHH
Confidence 3588999999999999999888765555443210 00 0 00 0000 000 001223
Q ss_pred HHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 99 LIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 99 ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
++.-+. ..|++|+-- .+...+|..+|+|++.+..
T Consensus 192 ~~~li~------~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 192 LAALLA------RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred HHHHHH------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 333332 278999864 3578899999999998764
No 366
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.40 E-value=22 Score=33.02 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=37.6
Q ss_pred CCCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+=||=||+..++. .++|++.+- .|-.--..+ ++.+++.+++++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin-----------------~G~lGFl~~---~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGIN-----------------RGNLGFLTD---LDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEE-----------------CCCCCcccc---cCHHHHHHHHHHHHcCC
Confidence 3466999999999999975 367887772 221111223 66888999999998743
No 367
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=51.28 E-value=27 Score=31.98 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+|.+..-+|-|-..-...||.+|+++|++|.++=-+.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 56777777888999999999999999999999885543
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.18 E-value=22 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=28.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC-cchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ-FIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~-~~~~~i~~ 49 (468)
|||+++-.+..| ..+|..|++.||+|+++... ...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 478888655554 46788899999999999973 33334443
No 369
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=51.18 E-value=54 Score=21.44 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 012212 408 TRQEIQRKVLTLLKNDD-----IRSNSLKLKEVARKSLLGGGSSFRNFESFISD 456 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~-----~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (468)
|.++|+++|+++|.+.+ .++=-+.|.++|.-. -.+....|++++..
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~d---L~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGVD---LSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS-----SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCC---cHHHHHHHHHHHHH
Confidence 56788899999998766 333334444444211 12335566665544
No 370
>PRK09739 hypothetical protein; Provisional
Probab=51.01 E-value=40 Score=29.20 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCc--cChH-HHHHHHHHHHHCCCEEEEEEC
Q 012212 3 RQPHVLVIPYPAQ--GHVA-PLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 3 ~~~~Il~~~~~~~--GH~~-p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+||||+++..... |... -...+++.|.++||+|+++--
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 4788886644333 3222 244556777788999997764
No 371
>PRK09620 hypothetical protein; Provisional
Probab=50.83 E-value=39 Score=30.17 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=26.3
Q ss_pred CEEEEEcCCCccChH------------HHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVA------------PLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~------------p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+||++...|+.=.+. --..||++|.++||+|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467766555433322 2367899999999999999865
No 372
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=50.50 E-value=87 Score=27.86 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=35.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-+++.-.++.|...-...++...+++|..|.|++.....+.+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 35677778889999999998888889999999999877655443
No 373
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=50.49 E-value=99 Score=30.62 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||+||.+.. ...+|+.+|+|++.++
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 46999999964 5788999999998765
No 374
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=50.43 E-value=17 Score=37.09 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=44.1
Q ss_pred cChHHHhcCCCCCceeec---cCchhHHHhhhcCCceecccccc-----chhhhHHHHHHHhhceeEeeccCCCccCHHH
Q 012212 340 APQEKVLGHSSVACFISH---CGWNSTMEGLSMGVPFLCWPYFS-----DQYQNRNYICEAWKIGLQFFADENGIITRQE 411 (468)
Q Consensus 340 ~p~~~ll~~~~~~~~I~h---GG~~s~~eal~~GvP~v~~P~~~-----DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~ 411 (468)
+|+.+++.-+++++|-|- =|+ |=+||+++|||.|+.=+.+ .+... .. .. .|+-++=.++ .+.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~-~GV~VvdR~~----~n~~e 532 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EE-YGVYVVDRRD----KNYDE 532 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GG-GTEEEE-SSS----S-HHH
T ss_pred CCHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cC-CcEEEEeCCC----CCHHH
Confidence 467777766666444441 122 7899999999999875421 22211 11 23 2666554454 45555
Q ss_pred HHHHHHHHhc----ChH-----HHHHHHHHHHHH
Q 012212 412 IQRKVLTLLK----NDD-----IRSNSLKLKEVA 436 (468)
Q Consensus 412 l~~ai~~~l~----~~~-----~r~~a~~l~~~~ 436 (468)
..+.+.+.|. -.+ .|+++++|++++
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 5555554443 211 666666666543
No 375
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=50.37 E-value=1.2e+02 Score=23.96 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred chhhhhhcccCccEEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEE
Q 012212 263 SCLSWLDEQAIRSVVYVAFGSVAVL-SQQQFAELALGLESLQKPFLWVI 310 (468)
Q Consensus 263 ~l~~~l~~~~~~~vv~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~l~~~ 310 (468)
+..+|+..++ +++|.|-.... +++.+..+++.+.+.+.-.+.+-
T Consensus 35 d~~~~l~~gE----lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~ 79 (123)
T PF07905_consen 35 DPSDWLRGGE----LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIK 79 (123)
T ss_pred CHHHhCCCCe----EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3457876643 77777776544 56678899999998887655543
No 376
>PRK08939 primosomal protein DnaI; Reviewed
Probab=50.25 E-value=32 Score=32.29 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=37.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
..++++..+|.|-.+=+.+||++|.++|+.|+|++.+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 457788888889999999999999999999999998766555543
No 377
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.25 E-value=28 Score=31.69 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=37.1
Q ss_pred CCCceeeccCchhHHHhhh-cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLS-MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
+++++|+=||=||+..++. +++|++.+-.. .+|- ..+ ++.+++.++++++++..
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGf---l~~---~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGF---LSS---YTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcc---ccc---cCHHHHHHHHHHHHcCC
Confidence 4466999999999999877 57888766210 1221 223 66788888888887643
No 378
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.98 E-value=1e+02 Score=27.49 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCc-cCh---HHHHHHHHHHHHCCCEEEEEECCcch--HHHHHhhhhhccCCCCCeE--EEEcCCCCCCCc
Q 012212 4 QPHVLVIPYPAQ-GHV---APLMKLATKIAERAIKVTVVNTQFIH--KKIIASLQEKAEDSSSQIK--LVTIPDGLELQA 75 (468)
Q Consensus 4 ~~~Il~~~~~~~-GH~---~p~~~LA~~L~~rGH~Vt~~~~~~~~--~~i~~~~~~~~~~~~~~i~--~~~~~~~~~~~~ 75 (468)
...|++.+..+. .-. .-+..|++.|.++|.+|.++.++... +.+.... .... +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~--------~~~~~~~~~~~------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA--------AGLQNPVINLA------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH--------TTHTTTTEEET-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH--------HhcccceEeec-------
Confidence 346777765544 222 23689999999999899888887762 2222211 1100 11111
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 76 ADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
.. ..+.++..-+. ..|++|+-- .+...+|..+|+|.+.+..
T Consensus 170 -~~---------------~~l~e~~ali~------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 170 -GK---------------TSLRELAALIS------RADLVIGND--TGPMHLAAALGTPTVALFG 210 (247)
T ss_dssp -TT---------------S-HHHHHHHHH------TSSEEEEES--SHHHHHHHHTT--EEEEES
T ss_pred -CC---------------CCHHHHHHHHh------cCCEEEecC--ChHHHHHHHHhCCEEEEec
Confidence 00 01223333332 279999875 4578999999999999864
No 379
>PRK06835 DNA replication protein DnaC; Validated
Probab=49.40 E-value=29 Score=32.95 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=36.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
..++|+..+|.|-..=..++|++|.++|+.|.|++.+.....+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56778887888888888899999999999999999876655544
No 380
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=49.26 E-value=56 Score=30.96 Aligned_cols=33 Identities=12% Similarity=0.295 Sum_probs=29.7
Q ss_pred EcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 10 IPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 10 ~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++.+|.|-.--...|++.|.++|++|.+++-+.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 367788999999999999999999999999865
No 381
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=49.19 E-value=1.6e+02 Score=24.79 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCEEEEEECCcch-HHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHH
Q 012212 21 LMKLATKIAERAIKVTVVNTQFIH-KKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDL 99 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~~-~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (468)
+..|.+...++|.+|.++.+..-. +.+.+... ..++++++.....+.. .....+++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~----~~yP~l~ivg~~~g~f-------------------~~~~~~~i 93 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR----RRYPGLRIVGYHHGYF-------------------DEEEEEAI 93 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH----HHCCCeEEEEecCCCC-------------------ChhhHHHH
Confidence 456666777789999999987542 22222111 3336788876554321 22345667
Q ss_pred HHHHhhCCCCCCceEEEecCCcc----cHHHHHHHhCCceEEEcccch
Q 012212 100 IEKINQSNDCEPIRCVIADVTVG----SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 100 l~~l~~~~~~~~pDlvi~D~~~~----~~~~~A~~lgiP~v~~~~~~~ 143 (468)
++.+.+. +||+|++-.-.+ +.....+.++.+ +.++....
T Consensus 94 ~~~I~~~----~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 94 INRINAS----GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 7777764 599999998777 666777778888 44444333
No 382
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=49.14 E-value=1.9e+02 Score=26.07 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=32.5
Q ss_pred EEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+|++.+ +.|--.-...|+..|..||++|+..--+++.+.-..
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~G 47 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPG 47 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCC
Confidence 3455544 457777888999999999999999988877654433
No 383
>PRK05380 pyrG CTP synthetase; Validated
Probab=49.03 E-value=1.6e+02 Score=30.02 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCEEEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|+|.+|++.+ +.|--.-...|+..|..||++||..--+++.+.-..
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~G 49 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPG 49 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCC
Confidence 4678888776 457778899999999999999999998877654433
No 384
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.95 E-value=1.5e+02 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHH-HHCCCEEEEEECCcchHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKI-AERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L-~~rGH~Vt~~~~~~~~~~i 47 (468)
|+|+-.+|.|-..-...||..+ ..+|++|.+++.+.++...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 5566667889999999999866 6889999999998865443
No 385
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=48.86 E-value=1.1e+02 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
+..|.+.-.++.|-..-+..|+..|.++|++|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34556777788899999999999999999999999877544
No 386
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=48.63 E-value=1.5e+02 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=31.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+.-.++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777888999999999999999999999988764
No 387
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=48.39 E-value=25 Score=29.95 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=31.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
||++.-.++. ..+-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5665554444 45566699999999999999999987666654
No 388
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.39 E-value=1.6e+02 Score=30.11 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEccc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPF 141 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (468)
...+..++.+++.+ +++||.|.. +..+|+.+|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~~G----~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRARG----IGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHCC----CCEEECChH---HHHHHHHcCCceEEEecH
Confidence 45677788888754 999999964 678999999999998764
No 389
>PRK04328 hypothetical protein; Provisional
Probab=48.31 E-value=2.1e+02 Score=25.83 Aligned_cols=44 Identities=11% Similarity=-0.078 Sum_probs=34.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-+++.-.|+.|-..-...++.+-+++|+.+.|++.....+.+..
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 45677778889988888887776788999999999777665544
No 390
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.30 E-value=1.9e+02 Score=28.24 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=34.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHH----CCCEEEEEECCcchHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAE----RAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~----rGH~Vt~~~~~~~~~~i 47 (468)
..|+|+-..|.|-..-...||..|.. +|+.|.+++.+.++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa 221 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA 221 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH
Confidence 34667777788999999999998873 58999999999875433
No 391
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=48.16 E-value=43 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
||++...++.|-......||+.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999988876
No 392
>PLN02470 acetolactate synthase
Probab=48.11 E-value=78 Score=32.90 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcc--------c--ChHHHhcCCCCCceeeccCch
Q 012212 292 FAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEW--------A--PQEKVLGHSSVACFISHCGWN 361 (468)
Q Consensus 292 ~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--------~--p~~~ll~~~~~~~~I~hGG~~ 361 (468)
.+.+++.|.+.|.+.++-+.+. ....+-+.+.+ .++++++.- + -+..+-+ ++.+++.|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG 87 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGG----ASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASG--KVGVCIATSGPG 87 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhC--CCEEEEECCCcc
Confidence 5678888888888888888766 11111122210 123444321 1 1222333 345588998854
Q ss_pred ------hHHHhhhcCCceeccc
Q 012212 362 ------STMEGLSMGVPFLCWP 377 (468)
Q Consensus 362 ------s~~eal~~GvP~v~~P 377 (468)
.+.+|...++|+|++.
T Consensus 88 ~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 88 ATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHHHhcCCcEEEEe
Confidence 8899999999999984
No 393
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=48.10 E-value=51 Score=31.58 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=22.1
Q ss_pred ceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 112 IRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 112 pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.|++|+.- .+.+.+|..+|+|+|.+.
T Consensus 263 a~l~v~nD--SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 263 AQLFIGVD--SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred CCEEEecC--CHHHHHHHHcCCCEEEEE
Confidence 79999875 457889999999999876
No 394
>PRK06749 replicative DNA helicase; Provisional
Probab=47.98 E-value=2.2e+02 Score=28.20 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=36.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++-.-|+.|-..-.+.+|...+++|+.|.|++.+-....+..
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~ 231 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLK 231 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHH
Confidence 4566888999999999999999999999999998876655544
No 395
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=47.88 E-value=1.7e+02 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=24.0
Q ss_pred CceEEEecCCcc---cHHHHHHHhCCceEEEc
Q 012212 111 PIRCVIADVTVG---SALEVAESMGIARAAVV 139 (468)
Q Consensus 111 ~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~ 139 (468)
+||+|++-.... .+..+|.++|.|++.-.
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 499999987766 67789999999988744
No 396
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=47.78 E-value=33 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.+|.|+.-+|.|-..-...||..|+++|++|.++=.++.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 467777777889999999999999999999999976653
No 397
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=47.55 E-value=83 Score=26.19 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred chhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc-ccCCchhHHHHhCCCceEE-cc-
Q 012212 263 SCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGS-RAKFPDGFIERVSNRGKIV-EW- 339 (468)
Q Consensus 263 ~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~nv~~~-~~- 339 (468)
++.++|.+.. ...++ |. ..-.+..+.++..+.+.+++=++... . ........ .+. ++
T Consensus 22 ~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~----l~~~~~~~~~--------~i~~~~~ 81 (159)
T TIGR00725 22 RLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDE----DFAGNPYLTI--------KVKTGMN 81 (159)
T ss_pred HHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChh----hccCCCCceE--------EEECCCc
Q ss_pred cChHHHhcCCCCCceeeccCchhHHHh---hhcCCceeccc
Q 012212 340 APQEKVLGHSSVACFISHCGWNSTMEG---LSMGVPFLCWP 377 (468)
Q Consensus 340 ~p~~~ll~~~~~~~~I~hGG~~s~~ea---l~~GvP~v~~P 377 (468)
.+-..++..-+-..++--||.||+-|. +.+++|+++++
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~ 122 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLR 122 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEE
No 398
>PRK10037 cell division protein; Provisional
Probab=47.52 E-value=2.1e+02 Score=25.69 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=30.1
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPY-PAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~-~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+.|.|... +|-|-..-...||.+|+++|++|.++=.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 35555544 466999999999999999999999995544
No 399
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=47.29 E-value=1.1e+02 Score=30.72 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.9
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
.+||++|.+ .....+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 469999998 4467899999999873
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.19 E-value=1e+02 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.+++|+...+.|-..-+..|+..+..+|+.|.+++.+.++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 5788888888899999999999999999999999998764
No 401
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=47.15 E-value=2.2e+02 Score=25.73 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.3
Q ss_pred ceeEeeccCCCccCHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 395 IGLQFFADENGIITRQEIQRKVLTLLK-------NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 395 ~g~~l~~~~~~~~t~~~l~~ai~~~l~-------~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
.|+.+.... ++.++-.+.|+..+. .++++++|.+++.. .||.|-+...+|+.++..
T Consensus 185 FGL~l~F~~---~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~------rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 185 FGLWLSFYP---PDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR------RGGRSGRTARQFIDDLAG 247 (249)
T ss_pred CCcEEEecC---CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhc
Confidence 667777666 888888878877763 25688888888743 388899999999998763
No 402
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=47.06 E-value=76 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++|+++..-+.|+ .||+.|.++|++|++-+...
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccC
Confidence 45788886554454 78999999999888766544
No 403
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=46.92 E-value=47 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=35.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
++..+.++..|.....-++..|.++|++|.++......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5677788899999999999999999999999977655444443
No 404
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.76 E-value=37 Score=34.68 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcC-------CCccChHHHH---HHHHHHHHCCCEEEEEECCcch
Q 012212 1 MSRQPHVLVIPY-------PAQGHVAPLM---KLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 1 m~~~~~Il~~~~-------~~~GH~~p~~---~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
|+.|+++++.+. +-.||+++++ .+|+.+..+||+|.|+|+.+-.
T Consensus 1 ~~~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CCCCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 344567776532 2459998655 4688888899999999987654
No 405
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.70 E-value=1.2e+02 Score=26.10 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=43.8
Q ss_pred CE-EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH---HHHHhhhhhccCCCCCeEEEEcCCC
Q 012212 5 PH-VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK---KIIASLQEKAEDSSSQIKLVTIPDG 70 (468)
Q Consensus 5 ~~-Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~---~i~~~~~~~~~~~~~~i~~~~~~~~ 70 (468)
.+ |+|+..++.-|-.-...+++.|++.|.+|.+++-+...+ .++.. .++. .+..+=+|+.+|.+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~-~~~~-~~~~~s~~~~~~~~ 175 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAF-IDAV-NGKDGSHLVSVPPG 175 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHH-HHHh-cCCCCceEEEeCCC
Confidence 46 668888878887778899999999999999988775533 33322 2222 22345677888764
No 406
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=46.57 E-value=29 Score=21.76 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHhcC-hHHHHHHHHH
Q 012212 408 TRQEIQRKVLTLLKN-DDIRSNSLKL 432 (468)
Q Consensus 408 t~~~l~~ai~~~l~~-~~~r~~a~~l 432 (468)
|+++|.+||..+.++ -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 578999999999977 5577666553
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.57 E-value=44 Score=33.04 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH--HCCCEEEEEECCcch
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIA--ERAIKVTVVNTQFIH 44 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~--~rGH~Vt~~~~~~~~ 44 (468)
.|+|+-..|.|-..-...||..++ +.|++|.+++.+.++
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 566777778899999999999997 568999999998865
No 408
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.50 E-value=1.5e+02 Score=23.73 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
++.||++-...+.+|-..---++..|...|++|.........+.+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 357899999999999999999999999999999998876544433
No 409
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=46.50 E-value=37 Score=31.27 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+|.|.-=+|.|-..-...||.+|+++|++|.++=-++
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 457888877788999999999999999999998886554
No 410
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=46.06 E-value=37 Score=31.04 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=30.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.|.+.--+|-|-..-...||..|+++|++|.++=.++
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4445566677999999999999999999999985544
No 411
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.01 E-value=24 Score=32.84 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++..||.|+-.+..|. .+|..|+++||+|+++...
T Consensus 1 ~~~~~kI~vIGaG~mG~-----~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGN-----GIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCCCCEEEEECCcHHHH-----HHHHHHHHCCCeEEEEeCC
Confidence 77778999996665554 5788999999999998754
No 412
>PRK06270 homoserine dehydrogenase; Provisional
Probab=45.87 E-value=1.5e+02 Score=28.29 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=36.9
Q ss_pred ChHHHhcCCCCCceee------ccC---chhHHHhhhcCCceecc---ccccchhhhHHHHHHHhhceeEe
Q 012212 341 PQEKVLGHSSVACFIS------HCG---WNSTMEGLSMGVPFLCW---PYFSDQYQNRNYICEAWKIGLQF 399 (468)
Q Consensus 341 p~~~ll~~~~~~~~I~------hGG---~~s~~eal~~GvP~v~~---P~~~DQ~~na~rv~~~lG~g~~l 399 (468)
...+++..+.++++|- |+| ..-+.+||.+|+++|+. |....-..-.+..+++ |+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 5577887777777776 554 44568999999999994 6533222233333443 666554
No 413
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=45.80 E-value=2.2e+02 Score=25.31 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=68.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLG 85 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (468)
=|+++..|+.|-.+-...|++.|.-.|++..++.-+..+....... ...... .+.+. +..
T Consensus 14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~-----------------~~~~ff--~p~n~-~~~ 73 (222)
T PF01591_consen 14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAP-----------------QDAEFF--DPDNE-EAK 73 (222)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS------------------S-GGGG--STT-H-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccc-----------------cccccC--CCCCh-HHH
Confidence 3568899999999999999999999999999999877666554311 000000 22222 222
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc------cHHHHHHHhCCceEEEcccc
Q 012212 86 ESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG------SALEVAESMGIARAAVVPFG 142 (468)
Q Consensus 86 ~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~~~ 142 (468)
..=.......++++++.+.+. .-++.|.|..-. +........|+.++++=+..
T Consensus 74 ~~R~~~a~~~l~dl~~~l~~~----~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic 132 (222)
T PF01591_consen 74 KLREQIAKEALEDLIEWLQEE----GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESIC 132 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS------SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 222233456678888888753 369999998765 33456677788887765443
No 414
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.62 E-value=45 Score=32.46 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCceEEEecCCcccHH----------HHHHHhCCceEEEc
Q 012212 92 MRGCLRDLIEKINQSNDCEPIRCVIADVTVGSAL----------EVAESMGIARAAVV 139 (468)
Q Consensus 92 ~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~----------~~A~~lgiP~v~~~ 139 (468)
..+..+++++-+++ .+||++|+-+.+..+. .+.+.++||.+...
T Consensus 61 ~eea~~~i~~mv~k----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKD----KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34444555555555 5699999999776222 25578999998866
No 415
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=45.58 E-value=48 Score=31.67 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHH
Q 012212 20 PLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDL 99 (468)
Q Consensus 20 p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (468)
.+..|++.|.++|++|.+..++.-.+...+... . .+... ... ... +.. ...+.++
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~--------~-----~~~~~------~~~---~~~-l~g--~~sL~el 255 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA--------A-----LNTEQ------QAW---CRN-LAG--ETQLEQA 255 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH--------h-----ccccc------ccc---eee-ccC--CCCHHHH
Confidence 478999999988999998887765544433210 0 00000 000 000 000 0013333
Q ss_pred HHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 100 IEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 100 l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
..-+. +.|++|+.- .+.+.+|..+|+|++.+..
T Consensus 256 ~ali~------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 256 VILIA------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHH------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 33332 279999875 4578899999999998763
No 416
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=45.51 E-value=52 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=30.4
Q ss_pred CEEE-EE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVL-VI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il-~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
+|++ |. +-++.|-..-...||..|+++|++|.++=.....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5554 44 3345688889999999999999999988665443
No 417
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=45.34 E-value=89 Score=28.29 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=23.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
|||+++..-+.|+ .||+.|.++|+ |++-..-.....
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~ 36 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGE 36 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHh
Confidence 6788876444443 79999999998 554444333333
No 418
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.34 E-value=2.1e+02 Score=24.93 Aligned_cols=144 Identities=11% Similarity=0.104 Sum_probs=74.4
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhC-CCceEEcccChHHHhcCCCC
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVS-NRGKIVEWAPQEKVLGHSSV 351 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~p~~~ll~~~~~ 351 (468)
+++++.|+-|.++ ...+..|.+.+.++.++ ... ..+.+.+..+ .++..........-+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3457888776654 23445555567665544 322 2233322222 23444444444555655544
Q ss_pred CceeeccCchhHHHhhh----cCCceeccccccchhhhH-----HHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 352 ACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNR-----NYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 352 ~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na-----~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
+|.--+...+.+.++ .++++-++ |.+..+ ..+.+. ++-+.+......-.-+..|++.|++++..
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~ 146 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE 146 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch
Confidence 888877666666554 45655443 443332 223333 44444544321112245678888777732
Q ss_pred --hHHHHHHHHHHHHHHHH
Q 012212 423 --DDIRSNSLKLKEVARKS 439 (468)
Q Consensus 423 --~~~r~~a~~l~~~~~~~ 439 (468)
..+-+.+.++++++++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 147 SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 22566667777777664
No 419
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.33 E-value=45 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHH----------HHHHHhCCceEEEc
Q 012212 90 RAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSAL----------EVAESMGIARAAVV 139 (468)
Q Consensus 90 ~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~----------~~A~~lgiP~v~~~ 139 (468)
+...+..+++++-+++ .+||++|+-+.+..+. .+.+.++||.+...
T Consensus 59 en~eea~~~i~~mv~k----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 59 ENLEEAKAKVLEMIKG----ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hCHHHHHHHHHHHHHh----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3344444555555555 5699999999776222 24578999998866
No 420
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=45.26 E-value=41 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
||++.++ +.|++- .+||..|.+.||+|++.+....
T Consensus 1 m~~~~i~---GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAII---GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEe---ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 4556665 444443 5889999999999999976544
No 421
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.99 E-value=52 Score=30.80 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc--chHHHHHhh
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF--IHKKIIASL 51 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~--~~~~i~~~~ 51 (468)
+-++|.+.-.++.||+. +.+|+++ |++||.++++. -++.+...|
T Consensus 181 pG~~vgI~GlGGLGh~a--Vq~AKAM---G~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMA--VQYAKAM---GMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CCcEEEEecCcccchHH--HHHHHHh---CcEEEEEeCCchhHHHHHHhcC
Confidence 34677888888889985 5677777 99999999984 455555555
No 422
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=44.99 E-value=22 Score=33.52 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
||||.|+-.+..|. .+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG~-----~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWGT-----ALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHHH-----HHHHHHHhCCCEEEEEECC
Confidence 46899997665553 6788899999999999874
No 423
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=44.97 E-value=40 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|+++- .|.+ -...++.|.+.||+|+++++.
T Consensus 14 ~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 5677773 3333 257889999999999999644
No 424
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=44.65 E-value=17 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 19 APLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 19 ~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
--.+=++..|.++||+|++++++.....++.+
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34566789999999999999999887777664
No 425
>PRK08181 transposase; Validated
Probab=44.46 E-value=39 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
..+++|+..+|.|-..=..++|+++.++|+.|.|++.....+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 35688888888888888889999999999999999875544443
No 426
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=44.27 E-value=3.3e+02 Score=27.05 Aligned_cols=36 Identities=6% Similarity=0.059 Sum_probs=27.9
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 6 HVLVIPYP-AQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 6 ~Il~~~~~-~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+|++.... +.|-..-...|++.|.++|++|..+-.+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G 39 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG 39 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC
Confidence 55555444 4499999999999999999998766554
No 427
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.20 E-value=37 Score=31.62 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=37.9
Q ss_pred CCceeeccCchhHHHhhh----cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 351 VACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
++.+|+=||=||+.+++. .++|++.+... .+|- ..+ ++.+++.+++++++++.
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF---l~~---~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF---LTD---IRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc---ccc---CCHHHHHHHHHHHHcCC
Confidence 455999999999999875 36788877421 1231 123 67899999999998743
No 428
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=44.11 E-value=44 Score=29.02 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCccChHHHHH-HHHHHHH-CCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMK-LATKIAE-RAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~-LA~~L~~-rGH~Vt~~~~~ 41 (468)
|+||+++-...+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 35788777777899998776 5666666 89999888764
No 429
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.98 E-value=66 Score=24.08 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++.||+++|..|.|--.-...+-+.+.++|.++.+-..+.
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 4579999998888543455667777778898887776643
No 430
>PLN02929 NADH kinase
Probab=43.98 E-value=37 Score=31.64 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCCceeeccCchhHHHhhh---cCCceecccccc------chhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHh
Q 012212 350 SVACFISHCGWNSTMEGLS---MGVPFLCWPYFS------DQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLL 420 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~---~GvP~v~~P~~~------DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l 420 (468)
.++++|+-||=||+..+.. .++|++.+-... ++..|.-...+ -+|-.- . ++.+++.+++++++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~---~---~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLC---A---ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Cccccc---c---CCHHHHHHHHHHHH
Confidence 3466999999999999855 478988875431 12222221111 244222 2 67889999999999
Q ss_pred cCh
Q 012212 421 KND 423 (468)
Q Consensus 421 ~~~ 423 (468)
++.
T Consensus 136 ~g~ 138 (301)
T PLN02929 136 FGR 138 (301)
T ss_pred cCC
Confidence 764
No 431
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.84 E-value=39 Score=33.83 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCCceeeccCchhHHHhhhc----CCceeccccccchhhhHHHHHHHhh-ceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLSM----GVPFLCWPYFSDQYQNRNYICEAWK-IGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+=||=||++.+... ++|++.+- +| +|-. .+ ++.+++.++|.++++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFL---t~---i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFM---TP---FHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCccee---cc---cCHHHHHHHHHHHHcCC
Confidence 45669999999999999774 56877662 12 3332 23 77899999999999754
No 432
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=43.54 E-value=3e+02 Score=26.54 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeE--EEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHH
Q 012212 21 LMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIK--LVTIPDGLELQAADREDPLKLGESVARAMRGCLRD 98 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (468)
.-.|++.|.+.|.++.+++.+...+...+...+.... .++. |..++.+ +. . ..+++
T Consensus 18 ~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~--~~~~~~~~~~~~e-------p~--~-----------~~v~~ 75 (366)
T PRK09423 18 LARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKE--AGLTVVFEVFNGE-------CS--D-----------NEIDR 75 (366)
T ss_pred HHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHh--CCCeEEEEEeCCC-------CC--H-----------HHHHH
Confidence 5567777887788898888765433222111111101 2232 2222211 10 1 12334
Q ss_pred HHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcccch
Q 012212 99 LIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 99 ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 143 (468)
+++..++ .++|+||.=.-.. .+-.+|..+++|++.+-+.+.
T Consensus 76 ~~~~~~~----~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTtag 119 (366)
T PRK09423 76 LVAIAEE----NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIAS 119 (366)
T ss_pred HHHHHHh----cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 4444444 4589999765433 455677777999999887543
No 433
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=43.45 E-value=50 Score=26.37 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=24.2
Q ss_pred CEEEEE-cCCCccCh--HHHHHHHHHHHHCCCEE-EEEECCc
Q 012212 5 PHVLVI-PYPAQGHV--APLMKLATKIAERAIKV-TVVNTQF 42 (468)
Q Consensus 5 ~~Il~~-~~~~~GH~--~p~~~LA~~L~~rGH~V-t~~~~~~ 42 (468)
||++++ ..+-+|+- .-.+.+|+++.+.||+| +++-..+
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 456543 33334444 45777899999999984 6665544
No 434
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.24 E-value=2.4e+02 Score=25.12 Aligned_cols=45 Identities=11% Similarity=-0.088 Sum_probs=35.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.-+++.-.|+.|-..-...++.+-+++|..|.|++.....+.+..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 346677888889999888887776689999999999887665544
No 435
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=43.12 E-value=2.7e+02 Score=26.68 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=81.1
Q ss_pred hhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHH
Q 012212 266 SWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKV 345 (468)
Q Consensus 266 ~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l 345 (468)
+...+++++.|||++.|-.+. .+.....+.+|-++-..++-+..... -.|+. ...|
T Consensus 123 ~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hk-------l~PPa----------------~~~l 178 (364)
T PRK15062 123 KIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHK-------LVPPA----------------MRAL 178 (364)
T ss_pred HHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEecc-------ccHHH----------------HHHH
Confidence 344456677899999986543 44455556666554444544444322 12222 2456
Q ss_pred hcCC--CCCceeeccCchhHHHh-------hhcCCceeccccccchhhhHHHH-HHHh--hceeEee-c----cCCCccC
Q 012212 346 LGHS--SVACFISHCGWNSTMEG-------LSMGVPFLCWPYFSDQYQNRNYI-CEAW--KIGLQFF-A----DENGIIT 408 (468)
Q Consensus 346 l~~~--~~~~~I~hGG~~s~~ea-------l~~GvP~v~~P~~~DQ~~na~rv-~~~l--G~g~~l~-~----~~~~~~t 408 (468)
|..+ ++++||.-|--.++.-+ -.+|+|+++..|-...-.-|-.. .+.+ |-....+ . ...|+..
T Consensus 179 l~~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g~~~v~N~Y~r~V~~eGN~~ 258 (364)
T PRK15062 179 LEDPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEGRAEVENQYTRVVKEEGNLK 258 (364)
T ss_pred HcCCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCceEEEccceeeCcccCHH
Confidence 6555 47888887765444322 36799999998866555444221 1101 2222221 1 1234455
Q ss_pred HHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHH
Q 012212 409 RQEIQRKVLTLLKNDD-----IRSNSLKLKEVARKS 439 (468)
Q Consensus 409 ~~~l~~ai~~~l~~~~-----~r~~a~~l~~~~~~~ 439 (468)
++++.+.+=++-+... +.+...+|++++...
T Consensus 259 A~~~i~~vFe~~d~~WRGlG~Ip~SGl~lr~ey~~~ 294 (364)
T PRK15062 259 AQELIAEVFEVRDAFWRGLGVIPNSGLRLREEYAAF 294 (364)
T ss_pred HHHHHHHHcCcCCCcccCCCccCchhhhhhHHHHhc
Confidence 6655555444443322 667778888888774
No 436
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=43.12 E-value=1.8e+02 Score=29.49 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=35.5
Q ss_pred CEEEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+|.+|++.+ +.|--.-...|+..|..||++|+.+--+++.+.-..
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~G 48 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPG 48 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCC
Confidence 367777766 457778899999999999999999998877654433
No 437
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.07 E-value=35 Score=34.07 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred CEEEEEcCCCccChHH------------HHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAP------------LMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p------------~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+|||+...|+.=.+.| -.+||+++..+|++||+++++
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
No 438
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=43.02 E-value=1.2e+02 Score=25.97 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=45.8
Q ss_pred ccccccchhhhHHHHHHHhhceeEee------------ccCCCccCHHHHH----HHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFF------------ADENGIITRQEIQ----RKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~------------~~~~~~~t~~~l~----~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
..|.+.||..--..+-+.+.+|+.-. .+. +..+.|+ +.|+++|.|+.+-+|-+++.....+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~---Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQ---FDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcC---CCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 34557777777766544356666542 133 6666666 6788999999966666666555544
Q ss_pred H------hcCCCchHHHHHHH
Q 012212 439 S------LLGGGSSFRNFESF 453 (468)
Q Consensus 439 ~------~~~~g~~~~~~~~~ 453 (468)
| .+++||=.+++=.+
T Consensus 99 A~~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 99 ARAYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHHhcCCHHHHHhhc
Confidence 3 22355545555333
No 439
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=42.91 E-value=57 Score=31.64 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCceeeccCchhHHHhhhcC-----------------CceeccccccchhhhHHHHHHHhhceeEe-eccCCCccCHHHH
Q 012212 351 VACFISHCGWNSTMEGLSMG-----------------VPFLCWPYFSDQYQNRNYICEAWKIGLQF-FADENGIITRQEI 412 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~G-----------------vP~v~~P~~~DQ~~na~rv~~~lG~g~~l-~~~~~~~~t~~~l 412 (468)
..+++|.||..+.+-|+.++ .|++.++-.. ++-. .+..+.+|+|+.. +.++++.++.+.|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 57899999988887775432 4566654322 2333 3333337999554 3455677899999
Q ss_pred HHHHHHHhcC
Q 012212 413 QRKVLTLLKN 422 (468)
Q Consensus 413 ~~ai~~~l~~ 422 (468)
+++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887654
No 440
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=42.56 E-value=38 Score=27.34 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 410 QEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 410 ~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
+++.+.-.+.|.|++.++.-..=+..|... +|-+.+.|+++++......
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~s---KGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLES---KGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHH---CT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHc---CCCCHHHHHHHHHhcCCcc
Confidence 555556669999999888887777788776 8999999999998876544
No 441
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=42.54 E-value=1e+02 Score=26.49 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=44.8
Q ss_pred HCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhC
Q 012212 30 ERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQS 106 (468)
Q Consensus 30 ~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 106 (468)
..|+++++++.+.-+..+.+. -++++...+..+++.. ...++............+...++++.|.+.
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~---------~G~~~~~~~S~feEnl-~k~~~~~p~~yv~~tA~~KA~~I~erL~~~ 73 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE---------MGLNLEVVVSTFEENL-IKSSFETPEDYVVETAKQKAEEIIERLGDG 73 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH---------cCCceEEEeccchhhc-hhhccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 468999999998887777664 4557766665555443 233344555666666777778888888744
No 442
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=42.52 E-value=3.8e+02 Score=27.13 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhH---HHHhCCCceEEcccC-hHHHhcCCCCCceee-----ccC
Q 012212 289 QQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGF---IERVSNRGKIVEWAP-QEKVLGHSSVACFIS-----HCG 359 (468)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~~p-~~~ll~~~~~~~~I~-----hGG 359 (468)
-.++..++.-+-+.+.++++.-.+. ..+...+ .++.+.++.+.-|.. ....+-++..+.++- =||
T Consensus 309 ~dl~~~~i~~~l~~~~~~vilG~gd------~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcG 382 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLVLLGTGD------PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCG 382 (487)
T ss_pred hhHHHHHHHHHHHhCceEEEEecCc------HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCc
Confidence 3445555554444455555544332 1122222 233467777774443 333332344444554 345
Q ss_pred chhHHHhhhcCCceecccccc------chhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 360 WNSTMEGLSMGVPFLCWPYFS------DQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 360 ~~s~~eal~~GvP~v~~P~~~------DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
.+ =++|+.+|.+-|+.+..+ |-..++ .... |.|..+.. .+++.+..++++.+. -|+..-..+.
T Consensus 383 L~-ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-----~~~~~l~~al~rA~~--~y~~~~~~w~ 451 (487)
T COG0297 383 LT-QLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-----TNPDHLANALRRALV--LYRAPPLLWR 451 (487)
T ss_pred HH-HHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-----CCHHHHHHHHHHHHH--HhhCCHHHHH
Confidence 54 567999999888888643 322232 3443 77777765 689999999998774 4554444455
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhhcccC
Q 012212 434 EVARKSLLGGGSSFRNFESFISDIKMLISGC 464 (468)
Q Consensus 434 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 464 (468)
...+.++.-.=|-.....+.++-.+..++.|
T Consensus 452 ~~~~~~m~~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 452 KVQPNAMGADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred HHHHhhcccccCchhHHHHHHHHHHHHhccc
Confidence 5555544323344777788888777776654
No 443
>PRK12377 putative replication protein; Provisional
Probab=42.45 E-value=45 Score=30.18 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=36.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
..++|.-.+|.|-..=..+||++|.+.|+.|.|++.+.....+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 45778888888988899999999999999999998865555444
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.87 E-value=28 Score=32.70 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..|||.|+-.+..| .++|+.|.++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35789998666555 489999999999999998653
No 445
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=41.80 E-value=2.1e+02 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=24.9
Q ss_pred CCceEEEecCCcc---cHHHHHHHhCCceEEEcc
Q 012212 110 EPIRCVIADVTVG---SALEVAESMGIARAAVVP 140 (468)
Q Consensus 110 ~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~ 140 (468)
.+||+|++-.... .+..+|.++|.|++.-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 3599999987665 677899999999987543
No 446
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.74 E-value=37 Score=31.33 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCCceeeccCchhHHHhhh---cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 350 SVACFISHCGWNSTMEGLS---MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~---~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
.++++|.-||=||+.+++. .++|++.++... +| -..+ ++.+++.+++.+++++
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lG---Fl~~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LG---FLTE---VEPEETFFALSRLLEG 112 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CC---cccc---CCHHHHHHHHHHHHcC
Confidence 3456999999999999884 356888775211 11 1112 5677788888888864
No 447
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.67 E-value=64 Score=24.65 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|.|||++|..|.|--.-...+-+.+.++|.++.+-..+
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 35899999888855566667777777889888776554
No 448
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.65 E-value=4.2e+02 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=31.4
Q ss_pred CEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.|++.+ +.++.|-..-...||..|++.|++|.++-.+...
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~ 587 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRK 587 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 455544 4456799999999999999999999998766443
No 449
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.56 E-value=37 Score=35.05 Aligned_cols=54 Identities=19% Similarity=0.436 Sum_probs=38.8
Q ss_pred CCCceeeccCchhHHHhhhc----CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 350 SVACFISHCGWNSTMEGLSM----GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.++++|+-||=||+..+... ++|++.+- .|-.--..+ ++.+++.+++++++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin-----------------~G~lGFL~~---~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICIN-----------------MGTVGFLTE---FSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc-----------------CCCCCcCcc---cCHHHHHHHHHHHHcCC
Confidence 35679999999999999763 78988772 121111233 67888999999998753
No 450
>PLN02327 CTP synthase
Probab=41.45 E-value=2.2e+02 Score=29.09 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=35.5
Q ss_pred EEEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|.+|++.+ +.|--.-...|+..|..||++|+..--+++.+.-..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~G 48 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAG 48 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCC
Confidence 77788766 457778899999999999999999998877654433
No 451
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=40.46 E-value=56 Score=31.62 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|++.|||++. ++.|.+ -..|++.|.++||+|+.+.-
T Consensus 18 ~~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 3466888877 344443 34789999999999999875
No 452
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.45 E-value=3.3e+02 Score=27.26 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=20.7
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEE
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAV 138 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~ 138 (468)
.+||++|... ....+|+.+|||++.+
T Consensus 394 ~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 4599999873 3567889999999875
No 453
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.34 E-value=1e+02 Score=30.69 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=36.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
--|.|+-.-|.|--.-+..||-.|.+.+|+|.++.-+.|+..
T Consensus 379 YVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsG 420 (587)
T KOG0781|consen 379 YVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSG 420 (587)
T ss_pred eEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhh
Confidence 346788888999999999999999999999999999888653
No 454
>PLN00016 RNA-binding protein; Provisional
Probab=40.29 E-value=37 Score=32.93 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++|+++.--+.|+-.--..|++.|.++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 467887722222232333578899999999999998754
No 455
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=40.11 E-value=3.1e+02 Score=25.41 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=34.7
Q ss_pred CEEEEEcCCCc-cChHH-HHHHHHHHHHCCCEEEEEECCcc--hHHHHHhh
Q 012212 5 PHVLVIPYPAQ-GHVAP-LMKLATKIAERAIKVTVVNTQFI--HKKIIASL 51 (468)
Q Consensus 5 ~~Il~~~~~~~-GH~~p-~~~LA~~L~~rGH~Vt~~~~~~~--~~~i~~~~ 51 (468)
.-|+|++.=++ -|-.. ..-|++.|.++|++|-++..|.. .+.+...|
T Consensus 17 lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df~~lG 67 (302)
T PF08497_consen 17 LDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDFKRLG 67 (302)
T ss_pred ccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHhC
Confidence 45777776666 55554 44468889999999999999985 45667766
No 456
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=40.08 E-value=35 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=28.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
+||.|+-.+.+| .++|+.|.++||+|+++.-...+
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhh
Confidence 478888776665 48999999999999999876443
No 457
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=39.94 E-value=50 Score=30.34 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=32.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..|.|..-+|.|-..-...||-+|+++|++|.++=.++
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dp 39 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36677777788999999999999999999999985543
No 458
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=39.79 E-value=39 Score=29.99 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 17 HVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 17 H~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+..|...|++|.++||+|+++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45678899999999999999999873
No 459
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=39.76 E-value=1.1e+02 Score=26.47 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCC-ceEEEcccch
Q 012212 93 RGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGI-ARAAVVPFGP 143 (468)
Q Consensus 93 ~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgi-P~v~~~~~~~ 143 (468)
...++.+-+.+.+.+ .+||+||+=.... .+..++..||+ |...+.....
T Consensus 13 ~~~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 13 HRLCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHHHcC--CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 344566666776655 8899999877544 77889999999 6666555444
No 460
>PHA02754 hypothetical protein; Provisional
Probab=39.70 E-value=46 Score=21.92 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=20.9
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 414 RKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 414 ~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
+.|.+++.+.++++..+++++++.++
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 34566777889999999999998774
No 461
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=39.42 E-value=39 Score=33.30 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+ ++||.|+-.+..| ..+|..|+++||+|+.+-...
T Consensus 1 m~-~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MS-FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CC-ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCCH
Confidence 44 5789888554444 478999999999999887643
No 462
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.40 E-value=70 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCceEEEecCC--cccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVT--VGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~--~~~~~~~A~~lgiP~v~~~ 139 (468)
.++|.|++=.. .+.+..+|..+|+|++.+-
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 45999987543 2267889999999999854
No 463
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.36 E-value=51 Score=27.96 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=28.4
Q ss_pred ccChHH-HHHHHHHHH-HCCCEEEEEECCcchHHHHH
Q 012212 15 QGHVAP-LMKLATKIA-ERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 15 ~GH~~p-~~~LA~~L~-~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-||... ...+.+.|. ++||+|.++.++...+.+..
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 478766 889999998 46999999999887766654
No 464
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=39.35 E-value=80 Score=29.95 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=54.2
Q ss_pred hhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHH
Q 012212 266 SWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKV 345 (468)
Q Consensus 266 ~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l 345 (468)
+...+.+++.|||++-|-.+. .+.....+.++.++-..+|-+..... -.|+. ...|
T Consensus 118 ~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hk-------~~ppa----------------l~~l 173 (355)
T PF01924_consen 118 KIAKENPDKEVVFFAVGFETT-APATAAAILQAKEEGIKNFSVLSSHK-------LTPPA----------------LEAL 173 (355)
T ss_dssp HHHHH-TTSEEEEEEEE-HHH-HHHHHHHHHHHHHHT-SSEEEEEEEE--------CHHH----------------HHHH
T ss_pred HHHHhCCCCceEEEEeCcccC-cHHHHHHHHHHHHcCCCCEEEEEecc-------ccHHH----------------HHHH
Confidence 344556677899999986533 34444556666654444444333322 12222 2456
Q ss_pred hcCC--CCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 346 LGHS--SVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 346 l~~~--~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
|..+ ++++||.-|--.++.-+ ..+...+++ .|+-.++.- +.+.+|..+|..++.
T Consensus 174 l~~~~~~idGfi~PGHVs~I~G~----------------~~y~~l~~~-y~~P~vIaG-----FEp~diL~ai~~lv~ 229 (355)
T PF01924_consen 174 LEDPELKIDGFICPGHVSTIIGS----------------EPYEFLAEE-YGIPCVIAG-----FEPLDILQAIYMLVK 229 (355)
T ss_dssp HHTT----SEEEEEHHHHHHHCC----------------HHHHHHHHC-C---EEEE------SSHHHHHHHHHHHHH
T ss_pred HcCCCCCccEEEeCCeeeEEecc----------------hhhHHHHHH-cCCCeEEcC-----CCHHHHHHHHHHHHH
Confidence 6554 67899988766555422 111222233 255444443 567777777766664
No 465
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=39.28 E-value=48 Score=29.68 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=29.0
Q ss_pred CccCh-HHHHHHHHHHHHC--CCEEEEEECCcchHHHHH
Q 012212 14 AQGHV-APLMKLATKIAER--AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 14 ~~GH~-~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~ 49 (468)
|-|+. +-...|++.|.++ ||+|.++.++.....+..
T Consensus 8 Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 44455 6889999999999 999999999876666654
No 466
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.18 E-value=35 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=28.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++..||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~~~I~vIGaG~mG-----~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 1 MNPIQNLAIIGAGTMG-----SGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred CCCccEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 7788899998555444 47788899999999998754
No 467
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=39.13 E-value=60 Score=27.51 Aligned_cols=110 Identities=9% Similarity=0.098 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHH-HHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCC-------------CCC-C-----c
Q 012212 16 GHVAPLMKLATKI-AERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDG-------------LEL-Q-----A 75 (468)
Q Consensus 16 GH~~p~~~LA~~L-~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~-------------~~~-~-----~ 75 (468)
+.+.-.+..|+.| .+.|.+|.+..+. ....+++. .++..+.++.. ... . .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~---------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH---------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh---------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 5667778899999 7889999877764 45555542 13444443310 000 0 0
Q ss_pred CCCCCHHHHHHHHHHH--------hhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccch
Q 012212 76 ADREDPLKLGESVARA--------MRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 76 ~~~~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 143 (468)
....+...+.+.+ .. ....++..++.+...+ .|+||.+.. ...+|+.+|+|++.+.++.-
T Consensus 87 ~~~~~~~~~~~ll-~~~i~~~~~~~~~e~~~~i~~~~~~G----~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 87 NIIPGLESIEELL-GVDIKIYPYDSEEEIEAAIKQAKAEG----VDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp S-SCCHHHHHHHH-T-EEEEEEESSHHHHHHHHHHHHHTT------EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred cccHHHHHHHHHh-CCceEEEEECCHHHHHHHHHHHHHcC----CcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 0112233333322 11 1355777888887754 999999964 67899999999998876443
No 468
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.02 E-value=38 Score=31.43 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=29.3
Q ss_pred CC-CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MS-RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~-~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+ ++.||.++-.+..|. .+|..|+.+||+|+++....
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEECCH
Confidence 44 456899997776664 78889999999999998754
No 469
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=38.97 E-value=79 Score=27.85 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=54.1
Q ss_pred CCccChHHHH---HHHHHHHHCCCEEEEEECCcch-HHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHH
Q 012212 13 PAQGHVAPLM---KLATKIAERAIKVTVVNTQFIH-KKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESV 88 (468)
Q Consensus 13 ~~~GH~~p~~---~LA~~L~~rGH~Vt~~~~~~~~-~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (468)
+-.||+.+++ -+++.|..+|++|.++++-... +.+.....+ ...+..++.
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-----------------------~g~~p~e~~--- 87 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-----------------------EGLSWKEVA--- 87 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-----------------------cCCCHHHHH---
Confidence 3559988754 4688888899999999886543 234332110 122233333
Q ss_pred HHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 012212 89 ARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 89 ~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
+.....+.+.++.+.- ..||..+---+.-|+..+-+.+|-|+-+
T Consensus 88 -~~~~~~f~~~~~~l~i----~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 88 -DYYTKEFFEDMKALNV----LPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred -HHHHHHHHHHHHHcCC----CCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 3334445555555442 2246655554444787788888876544
No 470
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.79 E-value=43 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 23 KLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 23 ~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
-+|..|++.||+|++++.....+.+.+.+
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~g 40 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQG 40 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHHC
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhee
Confidence 46889999999999999988455566633
No 471
>PRK06526 transposase; Provisional
Probab=38.75 E-value=31 Score=31.36 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
..+++++..+|.|-..=..+|+.++.++|+.|.|.+.....+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 45788888888888888899999999999999997765444333
No 472
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=38.32 E-value=3e+02 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCEEEEEECCcchHH
Q 012212 22 MKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 22 ~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
..|...|.+.||+||+++-......
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~~~ 36 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPKAS 36 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcchh
Confidence 4688899999999999998765443
No 473
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=38.31 E-value=2.5e+02 Score=23.88 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=25.3
Q ss_pred EEEEEcCCCc----cChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 6 HVLVIPYPAQ----GHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 6 ~Il~~~~~~~----GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+|.+++.... .+..-...|++.|+++||.|.+-..
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg 40 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGG 40 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 6777765433 3445678889999999999887665
No 474
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=38.15 E-value=47 Score=30.70 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 23 KLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 23 ~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-+|..|.+.||+|+++......+.+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~ 31 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQ 31 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHH
Confidence 468889999999999998644555655
No 475
>PRK03094 hypothetical protein; Provisional
Probab=38.13 E-value=31 Score=24.82 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCEEEEEEC
Q 012212 21 LMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+..|.++|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 44789999999999987755
No 476
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=38.08 E-value=72 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
|.+|.++--++.|--.-...++.+|++.||+|..+.-++-.+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 4589999999999999999999999999999999987665443
No 477
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.95 E-value=55 Score=28.42 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+.||.|=..||.|-.+.|+.=|+.|.++|.+|.+.--...
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4678888899999999999999999999999998776644
No 478
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=37.91 E-value=86 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCceEEEecCCc--ccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTV--GSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~--~~~~~~A~~lgiP~v~~~ 139 (468)
.++|+|+.=... +.+..+|..+|+|++++-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 458999875432 267779999999999865
No 479
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=37.89 E-value=66 Score=28.26 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=23.3
Q ss_pred CCceEEEecCCcc--cHHHHHHHhCCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 143 (468)
..||+||+-...- .+..=|..+|||.|.+..+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 4599877654333 556678889999999886544
No 480
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.84 E-value=2.5e+02 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.5
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||+||.+. ....+|+++|||++.++
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4599999885 36779999999998876
No 481
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.80 E-value=79 Score=23.94 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+||+++|..|.|--.=....=++..++|-++++-..+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 57899999999887777777777777788888776654
No 482
>PRK13236 nitrogenase reductase; Reviewed
Probab=37.70 E-value=67 Score=29.95 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=32.3
Q ss_pred CEEE-EEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVL-VIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il-~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+|++ |..=+|.|-..-...||..|+++|++|.++=.+..
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4554 76777889999999999999999999999965543
No 483
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=37.62 E-value=74 Score=29.64 Aligned_cols=39 Identities=5% Similarity=0.060 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCcc-C---hHHHHHHHHHHHHCCCEEEEEEC
Q 012212 2 SRQPHVLVIPYPAQG-H---VAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 2 ~~~~~Il~~~~~~~G-H---~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|+++||+++..+..+ | +.....++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 146799888754332 2 35677899999999999988754
No 484
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.47 E-value=1e+02 Score=27.16 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHHHhh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~~~~ 51 (468)
.-+++...++.|-..-...++.+-+++ |..|.+++.....+.+.+..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~ 67 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENM 67 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHH
Confidence 356777888999999999988777777 99999999988776665543
No 485
>PRK07952 DNA replication protein DnaC; Validated
Probab=37.33 E-value=60 Score=29.29 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=33.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
.++|...+|.|-..=..+||++|.++|+.|.+++.......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 466777778898888999999999999999999765544433
No 486
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=37.22 E-value=41 Score=31.31 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++..||.|+-.+..| .++|..|+.+||+|+++....
T Consensus 1 ~~~~~~V~vIG~G~mG-----~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMG-----SGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCCH
Confidence 7777899998766555 478899999999999887643
No 487
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=37.05 E-value=2e+02 Score=29.08 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
+++++++.-. - -.-+..+|+.|.+.|+++. +++.....+.+.|
T Consensus 3 ~~~~aLISVs-D---K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~G 45 (513)
T PRK00881 3 MIKRALISVS-D---KTGIVEFAKALVELGVEIL--STGGTAKLLAEAG 45 (513)
T ss_pred CcCEEEEEEe-C---cccHHHHHHHHHHCCCEEE--EcchHHHHHHHCC
Confidence 3445554433 2 4568899999999999983 5567777888744
No 488
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=37.00 E-value=2.3e+02 Score=23.07 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCcchH---HHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHH
Q 012212 21 LMKLATKIAERAIKVTVVNTQFIHK---KIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLR 97 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~~~---~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (468)
...+.+.|.++|+.+.++|...... .+...+.. ..++.......... ...+ .. .++
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~------~~f~~i~~~~~~~~---~Kp~-~~-----------~~~ 140 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD------DYFDEIISSDDVGS---RKPD-PD-----------AYR 140 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG------GGCSEEEEGGGSSS---STTS-HH-----------HHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc------cccccccccchhhh---hhhH-HH-----------HHH
Confidence 4567888888999999999986432 22332211 11222221111110 1111 11 223
Q ss_pred HHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 012212 98 DLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAV 138 (468)
Q Consensus 98 ~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~ 138 (468)
.+++.+.- .+-+++++|... .-...|+..|++.|.+
T Consensus 141 ~~~~~~~~----~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 141 RALEKLGI----PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHHTS----SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHHcCC----CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 33333321 234677777666 7899999999998864
No 489
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.87 E-value=2.5e+02 Score=23.43 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=59.1
Q ss_pred cCCCccChHH-HHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC-CCCCHHHHHHHH
Q 012212 11 PYPAQGHVAP-LMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA-DREDPLKLGESV 88 (468)
Q Consensus 11 ~~~~~GH~~p-~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (468)
.+...+.+.. +..+|..|..+|++|.=+........- .....+....++.+..-.-. .......-++.-
T Consensus 5 ~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~---------~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD 75 (159)
T PF10649_consen 5 VYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD---------GGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLD 75 (159)
T ss_pred EcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC---------CCccceEEEECCCCCEEEEeeccCCCCcccccC
Confidence 3344455554 567899999999999877754321111 11135566666544221100 000011111111
Q ss_pred HHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---------cHHHHHHHhCCceEEEccc
Q 012212 89 ARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---------SALEVAESMGIARAAVVPF 141 (468)
Q Consensus 89 ~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---------~~~~~A~~lgiP~v~~~~~ 141 (468)
-..+......+...+. ..+|++|.+-|.- .....|-..|||+++..+.
T Consensus 76 ~~~La~A~~~l~~al~-----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 76 PGALAEASAALRRALA-----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHHHHHHHHHHHh-----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 1122222223333333 3599999997743 2223456669999876543
No 490
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=36.85 E-value=45 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEE
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVT 36 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt 36 (468)
...||=|+-.+|.| |.+||+-|+++||+|+
T Consensus 6 ~~~~iHfIGIgG~G----MsglA~iL~~~G~~Vs 35 (459)
T COG0773 6 TLPKIHFIGIGGIG----MSGLAEILLNLGYKVS 35 (459)
T ss_pred CCceEEEEeecccc----HHHHHHHHHhCCCceE
Confidence 34468888888876 8899999999999997
No 491
>PLN02240 UDP-glucose 4-epimerase
Probab=36.81 E-value=66 Score=30.60 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+.++|++. ++.|.+- ..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 44676665 4555553 4678999999999999864
No 492
>PRK08322 acetolactate synthase; Reviewed
Probab=36.57 E-value=1.4e+02 Score=30.57 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.6
Q ss_pred CceeeccCc------hhHHHhhhcCCceeccc
Q 012212 352 ACFISHCGW------NSTMEGLSMGVPFLCWP 377 (468)
Q Consensus 352 ~~~I~hGG~------~s~~eal~~GvP~v~~P 377 (468)
.+++.|.|- +.+.+|-..++|+|++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 348888884 48899999999999884
No 493
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=36.53 E-value=46 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEE
Q 012212 6 HVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVV 38 (468)
Q Consensus 6 ~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~ 38 (468)
+|++- +..+.|-..-.+.|.++|.+||++|-=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 34443 5556799999999999999999998644
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=36.43 E-value=85 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
+++...++.|-..-...||..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666678889999999999999999998877
No 495
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=36.38 E-value=54 Score=31.95 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+||++.-.++. ..+-...+.+.|.+.|++|.++.++.....+..
T Consensus 3 ~k~IllgiTGSi-aa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGI-AAYKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 457776655544 446689999999999999999999887777754
No 496
>PLN02880 tyrosine decarboxylase
Probab=36.34 E-value=80 Score=31.93 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCceeeccCchhHHHhhhcCC------------ceeccccccchhhhH-HHHHHHhhce----eEeeccC--CCccCHHH
Q 012212 351 VACFISHCGWNSTMEGLSMGV------------PFLCWPYFSDQYQNR-NYICEAWKIG----LQFFADE--NGIITRQE 411 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~Gv------------P~v~~P~~~DQ~~na-~rv~~~lG~g----~~l~~~~--~~~~t~~~ 411 (468)
.+++++.||.-+.+.||+... +-+++ +.+||-..+ .+..+-||+| +.++.+. ++.++.+.
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv-~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~ 225 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVV-YASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPEL 225 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEE-EEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHH
Confidence 467999999988887775532 22222 134554433 4454447998 4566543 45699999
Q ss_pred HHHHHHHHhc
Q 012212 412 IQRKVLTLLK 421 (468)
Q Consensus 412 l~~ai~~~l~ 421 (468)
|+++|++...
T Consensus 226 L~~~i~~~~~ 235 (490)
T PLN02880 226 LSEAISTDLS 235 (490)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 497
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=36.28 E-value=2.9e+02 Score=24.04 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=31.9
Q ss_pred CEE-EEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHV-LVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~I-l~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++ ++.-.|+.|-..-.+.+|..++.+|.+|.|++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 344 46677788999999999999999999999998763
No 498
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.24 E-value=52 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++|.++-.+++| .+||+.|++.||+|++.....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 4688888877776 589999999999999998754
No 499
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=36.17 E-value=82 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCE-EEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIK-VTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~-Vt~~~~ 40 (468)
|+=|+|...|..|--.....|.++|+++||+ ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 4457888999999999999999999999986 444443
No 500
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=36.09 E-value=2.6e+02 Score=23.64 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHH----------CCCEEEEEECCcchHHHHHh
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAE----------RAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~----------rGH~Vt~~~~~~~~~~i~~~ 50 (468)
-+++...++.|=..-++.+|..+.. ++.+|.+++.+.....+...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r 88 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR 88 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence 3556677788999999999999886 67899999999887555543
Done!