Query 012212
Match_columns 468
No_of_seqs 121 out of 1298
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 2.5E-67 8.5E-72 513.4 39.6 433 3-458 12-453 (454)
2 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.7E-64 5.8E-69 504.1 36.6 452 2-459 6-479 (482)
3 2vch_A Hydroquinone glucosyltr 100.0 1.4E-61 4.9E-66 481.2 44.8 437 3-459 5-469 (480)
4 2c1x_A UDP-glucose flavonoid 3 100.0 8.4E-62 2.9E-66 479.7 39.5 437 3-459 6-452 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 7E-59 2.4E-63 460.2 37.4 428 4-458 9-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 2.2E-47 7.7E-52 376.5 37.2 396 1-455 9-418 (424)
7 4amg_A Snogd; transferase, pol 100.0 9.1E-45 3.1E-49 355.2 29.3 342 3-439 21-385 (400)
8 3rsc_A CALG2; TDP, enediyne, s 100.0 7.1E-43 2.4E-47 343.5 36.1 377 3-457 19-412 (415)
9 1iir_A Glycosyltransferase GTF 100.0 2.7E-43 9.1E-48 346.1 32.4 367 5-438 1-384 (415)
10 3ia7_A CALG4; glycosysltransfe 100.0 6E-42 2.1E-46 335.4 37.4 378 3-458 3-398 (402)
11 1rrv_A Glycosyltransferase GTF 100.0 2.6E-43 8.9E-48 346.3 25.4 374 5-458 1-400 (416)
12 3h4t_A Glycosyltransferase GTF 100.0 1.3E-41 4.4E-46 332.5 29.6 352 5-438 1-367 (404)
13 2iyf_A OLED, oleandomycin glyc 100.0 3.2E-40 1.1E-44 326.1 34.6 376 2-455 5-396 (430)
14 2yjn_A ERYCIII, glycosyltransf 100.0 6.7E-41 2.3E-45 331.6 29.7 373 3-457 19-434 (441)
15 2p6p_A Glycosyl transferase; X 100.0 2.6E-39 8.9E-44 314.7 36.3 352 5-456 1-377 (384)
16 4fzr_A SSFS6; structural genom 100.0 4.1E-38 1.4E-42 307.7 27.5 343 3-438 14-384 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 4.4E-37 1.5E-41 300.3 28.2 346 3-451 19-390 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 3.4E-36 1.2E-40 293.4 31.0 352 4-453 1-383 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 2E-33 6.9E-38 275.8 37.8 359 3-455 19-405 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 5.6E-29 1.9E-33 239.1 25.4 324 1-438 1-337 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 8.5E-29 2.9E-33 211.6 14.9 164 259-438 6-170 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 8.2E-22 2.8E-26 189.7 23.9 339 1-458 1-355 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 7.7E-16 2.6E-20 140.2 19.1 116 274-402 157-275 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 2.6E-15 8.9E-20 131.0 9.3 131 272-419 26-196 (224)
25 3okp_A GDP-mannose-dependent a 99.5 1.7E-12 5.7E-17 125.8 24.9 351 1-461 1-380 (394)
26 3c48_A Predicted glycosyltrans 99.5 5.8E-12 2E-16 123.9 28.8 343 2-427 18-396 (438)
27 1v4v_A UDP-N-acetylglucosamine 99.5 9.1E-13 3.1E-17 126.9 16.1 136 274-431 198-343 (376)
28 3fro_A GLGA glycogen synthase; 99.5 6.8E-11 2.3E-15 116.1 29.6 399 3-467 1-437 (439)
29 2r60_A Glycosyl transferase, g 99.4 3.5E-11 1.2E-15 120.5 26.8 357 1-429 4-431 (499)
30 3ot5_A UDP-N-acetylglucosamine 99.4 2E-12 6.9E-17 125.2 14.1 86 331-430 281-369 (403)
31 3dzc_A UDP-N-acetylglucosamine 99.4 4.4E-12 1.5E-16 122.6 15.1 138 273-431 229-376 (396)
32 2gek_A Phosphatidylinositol ma 99.4 1.3E-10 4.4E-15 112.9 24.9 115 331-461 262-384 (406)
33 1vgv_A UDP-N-acetylglucosamine 99.4 9E-12 3.1E-16 120.3 15.8 136 273-429 204-349 (384)
34 3beo_A UDP-N-acetylglucosamine 99.4 3.1E-11 1.1E-15 116.0 19.0 138 273-429 204-349 (375)
35 2iuy_A Avigt4, glycosyltransfe 99.3 2.3E-11 7.9E-16 115.4 15.3 152 278-461 165-336 (342)
36 2jjm_A Glycosyl transferase, g 99.3 1.3E-09 4.4E-14 105.4 27.3 351 5-462 16-387 (394)
37 2iw1_A Lipopolysaccharide core 99.3 9.9E-10 3.4E-14 105.3 24.9 141 275-436 196-351 (374)
38 2x6q_A Trehalose-synthase TRET 99.1 2.7E-08 9.1E-13 96.9 24.6 111 331-459 292-413 (416)
39 4hwg_A UDP-N-acetylglucosamine 99.1 5.3E-10 1.8E-14 107.2 11.3 319 4-426 9-346 (385)
40 3s28_A Sucrose synthase 1; gly 99.0 8.5E-08 2.9E-12 99.7 23.2 113 331-458 639-767 (816)
41 1rzu_A Glycogen synthase 1; gl 98.9 2.6E-07 8.9E-12 91.8 22.0 115 331-464 345-479 (485)
42 2qzs_A Glycogen synthase; glyc 98.9 6.2E-07 2.1E-11 89.1 24.5 117 331-466 346-482 (485)
43 2vsy_A XCC0866; transferase, g 98.8 4.2E-05 1.4E-09 77.5 35.7 119 332-460 434-559 (568)
44 2f9f_A First mannosyl transfer 98.6 9.1E-08 3.1E-12 81.2 8.6 139 277-434 25-175 (177)
45 3oy2_A Glycosyltransferase B73 98.6 3.3E-06 1.1E-10 81.9 19.7 111 334-461 256-391 (413)
46 2hy7_A Glucuronosyltransferase 98.6 7.3E-06 2.5E-10 79.3 21.3 76 331-424 264-354 (406)
47 2xci_A KDO-transferase, 3-deox 98.5 1.9E-05 6.3E-10 75.5 22.4 92 333-435 261-362 (374)
48 4gyw_A UDP-N-acetylglucosamine 98.1 9.6E-05 3.3E-09 76.6 17.4 171 273-458 521-703 (723)
49 3tov_A Glycosyl transferase fa 97.9 0.00057 1.9E-08 64.3 17.4 105 3-137 7-115 (349)
50 2bfw_A GLGA glycogen synthase; 97.8 0.00025 8.6E-09 60.8 12.9 85 333-430 96-189 (200)
51 3q3e_A HMW1C-like glycosyltran 97.8 0.00023 7.9E-09 70.8 14.0 142 274-430 440-596 (631)
52 3qhp_A Type 1 capsular polysac 97.7 0.00014 4.9E-09 60.3 9.4 134 275-430 2-148 (166)
53 1psw_A ADP-heptose LPS heptosy 97.4 0.0075 2.6E-07 56.5 18.1 102 5-137 1-106 (348)
54 3rhz_A GTF3, nucleotide sugar 97.2 0.00057 1.9E-08 63.9 6.8 109 333-457 215-337 (339)
55 2gt1_A Lipopolysaccharide hept 96.7 0.025 8.7E-07 52.4 13.4 45 5-49 1-47 (326)
56 2x0d_A WSAF; GT4 family, trans 96.0 0.0032 1.1E-07 60.7 3.0 85 331-428 294-385 (413)
57 3vue_A GBSS-I, granule-bound s 93.7 0.77 2.6E-05 45.6 13.3 133 277-421 329-476 (536)
58 2phj_A 5'-nucleotidase SURE; S 92.2 0.55 1.9E-05 41.0 8.3 114 4-140 1-127 (251)
59 1g5t_A COB(I)alamin adenosyltr 91.7 1.6 5.4E-05 36.6 10.4 98 4-121 28-130 (196)
60 3ty2_A 5'-nucleotidase SURE; s 91.5 0.39 1.3E-05 42.1 6.6 113 3-140 10-135 (261)
61 2wqk_A 5'-nucleotidase SURE; S 91.4 0.54 1.8E-05 41.3 7.5 113 4-140 1-127 (251)
62 3zqu_A Probable aromatic acid 91.0 0.35 1.2E-05 41.1 5.7 48 1-49 1-48 (209)
63 4dzz_A Plasmid partitioning pr 89.9 2.9 9.8E-05 35.1 10.9 83 6-122 3-86 (206)
64 1uqt_A Alpha, alpha-trehalose- 89.3 2 6.9E-05 41.9 10.4 107 334-460 333-454 (482)
65 3qxc_A Dethiobiotin synthetase 89.2 0.65 2.2E-05 40.7 6.2 38 2-39 18-57 (242)
66 3nb0_A Glycogen [starch] synth 88.9 2.6 9E-05 42.5 10.8 45 332-378 490-550 (725)
67 3t5t_A Putative glycosyltransf 87.4 1.9 6.5E-05 42.0 8.7 109 333-461 353-474 (496)
68 2x0d_A WSAF; GT4 family, trans 87.3 0.37 1.3E-05 46.1 3.7 40 3-42 45-89 (413)
69 3fgn_A Dethiobiotin synthetase 86.4 9.7 0.00033 33.3 12.0 37 3-39 24-62 (251)
70 1l5x_A SurviVal protein E; str 86.3 2.7 9.1E-05 37.4 8.3 114 5-141 1-128 (280)
71 3vue_A GBSS-I, granule-bound s 86.0 0.66 2.2E-05 46.1 4.8 39 3-41 8-52 (536)
72 1j9j_A Stationary phase surviV 85.9 2.7 9.4E-05 36.6 8.0 114 5-140 1-128 (247)
73 3igf_A ALL4481 protein; two-do 85.8 1.8 6.3E-05 40.5 7.4 41 4-45 1-42 (374)
74 3q0i_A Methionyl-tRNA formyltr 85.3 5.5 0.00019 36.3 10.1 37 1-42 4-40 (318)
75 2e6c_A 5'-nucleotidase SURE; S 84.1 5.4 0.00019 34.6 9.1 112 5-140 1-129 (244)
76 2iz6_A Molybdenum cofactor car 83.2 12 0.00042 30.6 10.4 77 335-421 92-173 (176)
77 1ccw_A Protein (glutamate muta 83.0 2.4 8.1E-05 33.3 5.9 47 4-50 3-49 (137)
78 2v4n_A Multifunctional protein 82.1 4.8 0.00016 35.2 7.9 111 5-140 2-126 (254)
79 2xj4_A MIPZ; replication, cell 81.8 8.6 0.00029 34.3 10.0 39 4-42 3-43 (286)
80 2q5c_A NTRC family transcripti 81.2 13 0.00045 31.0 10.3 44 94-144 129-172 (196)
81 2ywr_A Phosphoribosylglycinami 80.9 19 0.00064 30.6 11.2 35 4-41 1-37 (216)
82 3iqw_A Tail-anchored protein t 80.8 8.7 0.0003 35.2 9.7 46 4-49 15-61 (334)
83 3dm5_A SRP54, signal recogniti 80.1 15 0.0005 35.2 11.2 41 5-45 101-141 (443)
84 4dim_A Phosphoribosylglycinami 80.0 6.9 0.00024 36.9 9.2 37 1-42 4-40 (403)
85 1kjn_A MTH0777; hypotethical p 80.0 3.4 0.00011 32.4 5.4 48 3-50 5-54 (157)
86 3lyu_A Putative hydrogenase; t 79.8 20 0.00068 28.0 11.4 38 4-44 18-55 (142)
87 3ug7_A Arsenical pump-driving 79.1 14 0.00049 34.0 10.7 42 3-44 24-66 (349)
88 3auf_A Glycinamide ribonucleot 77.9 32 0.0011 29.4 12.3 108 3-140 21-131 (229)
89 2yxb_A Coenzyme B12-dependent 77.6 3.2 0.00011 33.6 5.1 47 3-49 17-63 (161)
90 3qjg_A Epidermin biosynthesis 77.5 2.9 9.8E-05 34.4 4.8 44 5-49 6-49 (175)
91 2ejb_A Probable aromatic acid 77.4 4.4 0.00015 33.7 6.0 44 5-49 2-45 (189)
92 3q9l_A Septum site-determining 77.3 32 0.0011 29.7 12.2 39 4-42 1-41 (260)
93 2zki_A 199AA long hypothetical 76.7 2.5 8.4E-05 35.4 4.4 41 1-42 1-42 (199)
94 4a1f_A DNAB helicase, replicat 75.5 5 0.00017 36.9 6.3 43 7-49 49-91 (338)
95 3la6_A Tyrosine-protein kinase 75.4 20 0.00069 31.9 10.3 41 4-44 91-133 (286)
96 3bfv_A CAPA1, CAPB2, membrane 75.3 26 0.0009 30.8 11.0 41 4-44 81-123 (271)
97 1y80_A Predicted cobalamin bin 74.3 5.6 0.00019 33.7 6.0 47 4-50 88-134 (210)
98 3dhn_A NAD-dependent epimerase 74.3 3.2 0.00011 35.4 4.6 38 1-42 1-38 (227)
99 1bg6_A N-(1-D-carboxylethyl)-L 74.2 2.2 7.6E-05 39.6 3.7 36 1-41 1-36 (359)
100 1sbz_A Probable aromatic acid 72.8 4.4 0.00015 33.9 4.8 44 5-49 1-45 (197)
101 3lqk_A Dipicolinate synthase s 72.3 3.5 0.00012 34.7 4.1 44 3-47 6-50 (201)
102 1q74_A 1D-MYO-inosityl 2-aceta 71.9 10 0.00035 34.2 7.4 41 1-41 1-41 (303)
103 3lrx_A Putative hydrogenase; a 71.9 36 0.0012 27.0 11.3 37 5-44 24-60 (158)
104 4b4o_A Epimerase family protei 71.7 39 0.0013 29.9 11.5 35 5-43 1-35 (298)
105 3cio_A ETK, tyrosine-protein k 71.7 33 0.0011 30.7 10.9 40 4-43 103-144 (299)
106 2i2x_B MTAC, methyltransferase 71.4 7.5 0.00026 34.2 6.3 46 3-48 122-167 (258)
107 1g63_A Epidermin modifying enz 70.2 3.6 0.00012 34.0 3.6 46 1-49 1-46 (181)
108 3bgw_A DNAB-like replicative h 69.8 14 0.00046 35.5 8.2 43 6-48 199-241 (444)
109 1p3y_1 MRSD protein; flavoprot 68.3 3.2 0.00011 34.7 3.0 46 3-49 7-52 (194)
110 3vot_A L-amino acid ligase, BL 68.1 16 0.00055 34.6 8.4 37 1-42 1-38 (425)
111 3mcu_A Dipicolinate synthase, 67.6 5.9 0.0002 33.4 4.5 43 3-46 4-47 (207)
112 1fmt_A Methionyl-tRNA FMet for 66.6 36 0.0012 30.7 9.9 35 2-41 1-35 (314)
113 3eag_A UDP-N-acetylmuramate:L- 66.4 6 0.00021 36.2 4.8 35 3-41 3-37 (326)
114 3ih5_A Electron transfer flavo 66.2 17 0.00058 30.9 7.2 109 3-139 2-122 (217)
115 2r8r_A Sensor protein; KDPD, P 66.0 8.2 0.00028 33.1 5.1 39 4-42 6-44 (228)
116 3ezx_A MMCP 1, monomethylamine 65.9 11 0.00038 32.0 6.0 47 4-50 92-138 (215)
117 3av3_A Phosphoribosylglycinami 65.2 62 0.0021 27.2 12.0 107 4-140 3-112 (212)
118 1e2b_A Enzyme IIB-cellobiose; 65.0 13 0.00044 27.5 5.5 39 3-41 2-40 (106)
119 4e12_A Diketoreductase; oxidor 64.7 5.7 0.0002 35.4 4.2 36 1-41 1-36 (283)
120 3u7q_B Nitrogenase molybdenum- 63.8 39 0.0013 33.1 10.2 33 5-42 365-397 (523)
121 3n7t_A Macrophage binding prot 63.8 15 0.00051 32.0 6.6 41 1-41 5-57 (247)
122 3cky_A 2-hydroxymethyl glutara 63.8 5.6 0.00019 35.7 4.0 35 1-40 1-35 (301)
123 3bh0_A DNAB-like replicative h 63.4 43 0.0015 30.2 9.9 44 6-49 70-113 (315)
124 1evy_A Glycerol-3-phosphate de 61.3 3.4 0.00011 38.6 2.0 36 1-41 12-47 (366)
125 3kcq_A Phosphoribosylglycinami 61.0 44 0.0015 28.2 8.8 101 1-140 5-112 (215)
126 2xxa_A Signal recognition part 61.0 29 0.001 33.0 8.6 40 6-45 102-142 (433)
127 2ixd_A LMBE-related protein; h 60.9 29 0.00099 30.0 7.9 37 5-41 4-40 (242)
128 3zzm_A Bifunctional purine bio 59.4 44 0.0015 32.2 9.1 97 5-122 10-113 (523)
129 3v9p_A DTMP kinase, thymidylat 59.1 83 0.0029 26.7 11.7 42 1-42 22-67 (227)
130 2vqe_B 30S ribosomal protein S 59.0 13 0.00044 32.4 5.1 33 110-142 157-191 (256)
131 3ghy_A Ketopantoate reductase 58.9 8 0.00027 35.4 4.2 41 4-49 3-43 (335)
132 4e21_A 6-phosphogluconate dehy 58.7 5.5 0.00019 37.0 3.0 36 1-41 19-54 (358)
133 2q6t_A DNAB replication FORK h 58.6 17 0.00057 34.8 6.5 43 6-48 202-245 (444)
134 1id1_A Putative potassium chan 58.2 8 0.00027 30.6 3.6 33 4-41 3-35 (153)
135 1qyd_A Pinoresinol-lariciresin 58.1 9.2 0.00031 34.3 4.4 38 1-42 1-38 (313)
136 1ihu_A Arsenical pump-driving 57.9 29 0.00099 34.6 8.4 41 3-43 6-47 (589)
137 1qgu_B Protein (nitrogenase mo 57.3 49 0.0017 32.4 9.6 34 5-43 361-394 (519)
138 1mvl_A PPC decarboxylase athal 57.2 13 0.00043 31.5 4.7 44 4-49 19-62 (209)
139 3rg8_A Phosphoribosylaminoimid 57.0 71 0.0024 25.4 8.6 136 276-439 4-149 (159)
140 4hcj_A THIJ/PFPI domain protei 57.0 20 0.0007 29.2 5.9 42 1-42 4-45 (177)
141 1psw_A ADP-heptose LPS heptosy 56.7 1.1E+02 0.0038 27.5 12.4 41 6-46 182-227 (348)
142 3hn2_A 2-dehydropantoate 2-red 56.6 17 0.0006 32.7 6.0 39 5-49 3-41 (312)
143 2ew2_A 2-dehydropantoate 2-red 56.3 7.9 0.00027 34.9 3.6 34 3-41 2-35 (316)
144 2zts_A Putative uncharacterize 56.3 59 0.002 27.5 9.3 44 6-49 32-76 (251)
145 3kkl_A Probable chaperone prot 56.1 20 0.00068 31.1 6.0 39 3-41 2-51 (244)
146 2fb6_A Conserved hypothetical 55.9 17 0.00058 27.4 4.8 45 1-45 4-52 (117)
147 3hwr_A 2-dehydropantoate 2-red 55.8 8.4 0.00029 35.0 3.7 44 3-51 18-61 (318)
148 3qha_A Putative oxidoreductase 55.4 6.3 0.00021 35.5 2.7 37 1-42 12-48 (296)
149 2xw6_A MGS, methylglyoxal synt 55.4 62 0.0021 25.0 7.9 97 3-138 2-111 (134)
150 1mio_B Nitrogenase molybdenum 55.3 33 0.0011 32.9 8.0 27 110-139 384-410 (458)
151 3kjh_A CO dehydrogenase/acetyl 55.1 8.2 0.00028 33.3 3.4 39 5-43 1-39 (254)
152 3pdi_B Nitrogenase MOFE cofact 55.1 22 0.00077 34.1 6.7 27 110-139 374-400 (458)
153 1qyc_A Phenylcoumaran benzylic 54.8 11 0.00038 33.7 4.4 38 1-42 1-38 (308)
154 1eiw_A Hypothetical protein MT 54.3 16 0.00056 27.2 4.4 61 352-421 40-109 (111)
155 1xmp_A PURE, phosphoribosylami 54.3 84 0.0029 25.3 12.4 144 275-442 12-165 (170)
156 3obb_A Probable 3-hydroxyisobu 54.0 14 0.00048 33.3 4.8 34 3-41 2-35 (300)
157 2pju_A Propionate catabolism o 54.0 25 0.00085 30.0 6.1 30 350-380 63-92 (225)
158 3doj_A AT3G25530, dehydrogenas 53.8 13 0.00044 33.6 4.6 35 2-41 19-53 (310)
159 1u11_A PURE (N5-carboxyaminoim 53.7 89 0.0031 25.4 11.8 145 276-444 23-177 (182)
160 4huj_A Uncharacterized protein 53.7 5.6 0.00019 33.9 2.0 34 2-40 21-54 (220)
161 3llv_A Exopolyphosphatase-rela 52.9 8.5 0.00029 29.8 2.9 35 3-42 5-39 (141)
162 1yt5_A Inorganic polyphosphate 52.6 10 0.00034 33.3 3.5 53 350-422 41-96 (258)
163 2bw0_A 10-FTHFDH, 10-formyltet 52.6 27 0.00091 31.9 6.4 34 2-40 20-53 (329)
164 3enk_A UDP-glucose 4-epimerase 52.5 14 0.00049 33.5 4.8 37 1-41 2-38 (341)
165 2a5l_A Trp repressor binding p 52.5 18 0.00063 29.9 5.1 40 3-42 4-44 (200)
166 3kl4_A SRP54, signal recogniti 52.3 60 0.002 30.8 9.0 41 5-45 97-138 (433)
167 1pno_A NAD(P) transhydrogenase 52.3 12 0.00042 29.8 3.5 37 4-42 23-64 (180)
168 3i83_A 2-dehydropantoate 2-red 52.2 15 0.00051 33.4 4.8 40 5-50 3-42 (320)
169 3g1w_A Sugar ABC transporter; 52.2 1.2E+02 0.0041 26.5 12.2 39 1-39 1-41 (305)
170 3io3_A DEHA2D07832P; chaperone 52.0 67 0.0023 29.4 9.2 43 5-47 18-63 (348)
171 3l7i_A Teichoic acid biosynthe 51.8 16 0.00053 37.7 5.3 113 338-461 605-722 (729)
172 3rfo_A Methionyl-tRNA formyltr 51.4 25 0.00086 31.8 6.0 36 2-42 2-37 (317)
173 1rw7_A YDR533CP; alpha-beta sa 51.1 31 0.001 29.8 6.4 39 4-42 3-52 (243)
174 2lpm_A Two-component response 51.0 13 0.00044 28.3 3.4 30 110-139 52-86 (123)
175 1jx7_A Hypothetical protein YC 50.7 21 0.00072 26.4 4.7 43 5-47 2-49 (117)
176 3dfu_A Uncharacterized protein 50.7 14 0.00048 31.8 4.0 34 3-41 5-38 (232)
177 2hy5_A Putative sulfurtransfer 50.3 25 0.00085 26.9 5.1 41 6-46 2-46 (130)
178 4gbj_A 6-phosphogluconate dehy 50.0 12 0.00041 33.7 3.6 29 6-39 7-35 (297)
179 1u0t_A Inorganic polyphosphate 50.0 14 0.00049 33.3 4.2 40 1-40 1-41 (307)
180 3f6r_A Flavodoxin; FMN binding 49.9 22 0.00074 27.7 4.9 39 4-42 1-40 (148)
181 2qyt_A 2-dehydropantoate 2-red 49.8 7.3 0.00025 35.2 2.3 35 1-40 4-45 (317)
182 2ph1_A Nucleotide-binding prot 49.8 13 0.00044 32.6 3.8 43 2-44 15-59 (262)
183 2j37_W Signal recognition part 49.7 72 0.0025 31.0 9.3 41 5-45 102-142 (504)
184 1ydg_A Trp repressor binding p 49.5 22 0.00077 29.7 5.2 41 2-42 4-45 (211)
185 3mc3_A DSRE/DSRF-like family p 49.5 27 0.00094 26.9 5.2 44 4-47 15-61 (134)
186 1o4v_A Phosphoribosylaminoimid 49.4 1.1E+02 0.0036 25.0 13.2 139 275-439 14-162 (183)
187 1q1v_A DEK protein; winged-hel 49.4 35 0.0012 22.9 5.0 54 405-458 10-66 (70)
188 1qzu_A Hypothetical protein MD 49.4 13 0.00043 31.4 3.5 45 4-49 19-64 (206)
189 1tvm_A PTS system, galactitol- 49.2 28 0.00097 25.9 5.1 38 3-40 20-58 (113)
190 2a33_A Hypothetical protein; s 49.1 48 0.0016 28.0 7.1 43 335-378 94-147 (215)
191 2khz_A C-MYC-responsive protei 49.0 91 0.0031 24.9 8.5 29 112-140 78-111 (165)
192 2w84_A Peroxisomal membrane pr 48.6 24 0.00083 23.6 3.9 48 409-459 14-61 (70)
193 2r6a_A DNAB helicase, replicat 48.6 65 0.0022 30.7 8.9 43 6-48 205-248 (454)
194 3s2u_A UDP-N-acetylglucosamine 48.5 30 0.001 31.9 6.4 27 348-376 92-121 (365)
195 2h78_A Hibadh, 3-hydroxyisobut 48.2 15 0.0005 33.0 4.0 34 3-41 2-35 (302)
196 2r85_A PURP protein PF1517; AT 48.2 16 0.00055 33.1 4.3 34 4-43 2-35 (334)
197 3ff5_A PEX14P, peroxisomal bio 48.2 26 0.00087 22.2 3.8 44 409-455 9-52 (54)
198 2q3e_A UDP-glucose 6-dehydroge 47.6 13 0.00044 36.0 3.7 36 1-41 2-39 (467)
199 2q5c_A NTRC family transcripti 47.4 22 0.00074 29.7 4.6 38 348-386 49-86 (196)
200 3euw_A MYO-inositol dehydrogen 47.4 1.1E+02 0.0039 27.6 10.1 108 276-401 7-123 (344)
201 2l2q_A PTS system, cellobiose- 47.2 25 0.00085 26.0 4.5 37 4-40 4-40 (109)
202 1lss_A TRK system potassium up 47.0 18 0.00061 27.6 3.9 33 4-41 4-36 (140)
203 1qkk_A DCTD, C4-dicarboxylate 46.4 54 0.0018 25.3 6.8 59 369-433 74-132 (155)
204 4dll_A 2-hydroxy-3-oxopropiona 46.0 24 0.00082 32.0 5.1 34 3-41 30-63 (320)
205 2vo1_A CTP synthase 1; pyrimid 45.7 21 0.00073 31.2 4.2 45 3-47 21-68 (295)
206 1g3q_A MIND ATPase, cell divis 45.6 23 0.00078 30.1 4.7 39 5-43 2-42 (237)
207 1j8m_F SRP54, signal recogniti 45.5 1.5E+02 0.005 26.4 10.2 40 6-45 100-139 (297)
208 2hy5_B Intracellular sulfur ox 45.4 32 0.0011 26.7 5.0 47 1-47 1-51 (136)
209 1cp2_A CP2, nitrogenase iron p 45.2 19 0.00066 31.4 4.2 38 5-42 2-39 (269)
210 3q2i_A Dehydrogenase; rossmann 45.0 77 0.0026 28.9 8.5 126 275-422 15-150 (354)
211 2bru_C NAD(P) transhydrogenase 44.8 28 0.00096 27.9 4.4 39 4-42 30-71 (186)
212 1hdo_A Biliverdin IX beta redu 44.6 33 0.0011 28.1 5.5 37 1-42 1-37 (206)
213 3m2t_A Probable dehydrogenase; 44.6 80 0.0027 28.9 8.6 108 276-400 8-125 (359)
214 1ydh_A AT5G11950; structural g 44.6 24 0.00084 29.9 4.5 44 334-378 89-143 (216)
215 2ehd_A Oxidoreductase, oxidore 44.5 29 0.00099 29.4 5.2 38 1-41 1-38 (234)
216 3lp6_A Phosphoribosylaminoimid 44.5 1.2E+02 0.0042 24.4 9.9 138 276-439 9-156 (174)
217 1gsa_A Glutathione synthetase; 44.4 20 0.00068 32.1 4.3 37 5-41 2-41 (316)
218 1oi4_A Hypothetical protein YH 44.4 52 0.0018 27.0 6.6 40 2-42 21-60 (193)
219 1f0y_A HCDH, L-3-hydroxyacyl-C 44.3 14 0.00049 33.1 3.3 34 3-41 14-47 (302)
220 3a4m_A L-seryl-tRNA(SEC) kinas 44.3 19 0.00064 31.5 4.0 40 1-40 1-40 (260)
221 2i2c_A Probable inorganic poly 44.2 17 0.00057 32.2 3.6 53 350-422 35-93 (272)
222 1q57_A DNA primase/helicase; d 44.0 88 0.003 30.3 9.1 42 7-48 245-287 (503)
223 1oc2_A DTDP-glucose 4,6-dehydr 44.0 18 0.00063 32.9 4.1 37 1-41 1-39 (348)
224 4b4k_A N5-carboxyaminoimidazol 43.5 1.3E+02 0.0045 24.4 12.8 144 274-441 22-175 (181)
225 2w36_A Endonuclease V; hypoxan 43.4 46 0.0016 28.3 6.0 42 97-140 91-139 (225)
226 2gk4_A Conserved hypothetical 43.4 18 0.00062 31.0 3.5 23 20-42 31-53 (232)
227 1u0t_A Inorganic polyphosphate 43.2 13 0.00046 33.5 2.9 28 350-377 75-106 (307)
228 2izz_A Pyrroline-5-carboxylate 43.1 12 0.00042 34.0 2.6 37 1-42 19-59 (322)
229 1p9o_A Phosphopantothenoylcyst 43.1 18 0.0006 32.8 3.6 24 20-43 67-90 (313)
230 3gpi_A NAD-dependent epimerase 43.0 26 0.00088 30.8 4.8 35 3-42 2-36 (286)
231 3tqr_A Phosphoribosylglycinami 43.0 1.5E+02 0.0051 24.9 9.9 107 1-141 1-114 (215)
232 3goc_A Endonuclease V; alpha-b 42.8 36 0.0012 29.2 5.2 31 110-140 106-143 (237)
233 3l4e_A Uncharacterized peptida 42.8 48 0.0016 27.8 6.1 45 264-308 18-62 (206)
234 3g79_A NDP-N-acetyl-D-galactos 42.6 22 0.00076 34.3 4.5 37 2-43 16-54 (478)
235 3gl9_A Response regulator; bet 42.3 46 0.0016 24.4 5.5 34 110-143 45-87 (122)
236 3dfz_A SIRC, precorrin-2 dehyd 42.1 1.6E+02 0.0054 24.9 10.9 144 273-439 31-186 (223)
237 3bul_A Methionine synthase; tr 41.7 37 0.0013 33.6 5.9 47 4-50 98-144 (579)
238 2lnd_A De novo designed protei 41.6 45 0.0015 22.7 4.5 49 368-421 49-100 (112)
239 3hr8_A Protein RECA; alpha and 41.5 1.6E+02 0.0054 27.0 9.9 39 7-45 64-102 (356)
240 1p3y_1 MRSD protein; flavoprot 41.2 93 0.0032 25.7 7.5 138 276-422 11-186 (194)
241 3zq6_A Putative arsenical pump 41.1 27 0.00093 31.7 4.7 39 5-43 14-53 (324)
242 3qvl_A Putative hydantoin race 41.1 1.2E+02 0.0041 26.1 8.6 37 5-41 2-39 (245)
243 2x5n_A SPRPN10, 26S proteasome 41.0 1.3E+02 0.0043 24.7 8.4 62 7-70 110-173 (192)
244 2afh_E Nitrogenase iron protei 40.8 26 0.0009 31.0 4.4 40 4-43 2-41 (289)
245 3c24_A Putative oxidoreductase 40.6 22 0.00075 31.5 3.9 33 4-41 11-44 (286)
246 2g1u_A Hypothetical protein TM 40.4 36 0.0012 26.7 4.8 34 4-42 19-52 (155)
247 4grd_A N5-CAIR mutase, phospho 40.2 1.4E+02 0.005 23.9 10.3 142 274-439 12-163 (173)
248 3to5_A CHEY homolog; alpha(5)b 40.0 43 0.0015 25.7 5.0 42 97-142 47-97 (134)
249 2ffh_A Protein (FFH); SRP54, s 39.9 1.8E+02 0.0062 27.4 10.2 39 7-45 101-139 (425)
250 2a33_A Hypothetical protein; s 39.8 45 0.0015 28.2 5.4 40 2-41 11-54 (215)
251 1wcv_1 SOJ, segregation protei 39.8 21 0.00073 31.0 3.6 41 3-43 4-46 (257)
252 3ius_A Uncharacterized conserv 39.8 42 0.0014 29.4 5.6 35 4-43 5-39 (286)
253 2ewd_A Lactate dehydrogenase,; 39.7 15 0.00052 33.3 2.7 37 1-42 1-38 (317)
254 3e9m_A Oxidoreductase, GFO/IDH 39.6 97 0.0033 27.9 8.2 62 339-401 56-125 (330)
255 1pjq_A CYSG, siroheme synthase 39.6 1.3E+02 0.0046 28.6 9.5 141 274-439 13-168 (457)
256 4hv4_A UDP-N-acetylmuramate--L 39.4 34 0.0012 33.2 5.3 33 3-39 21-53 (494)
257 1zu4_A FTSY; GTPase, signal re 39.3 2.1E+02 0.0072 25.7 10.3 40 6-45 107-146 (320)
258 3p9x_A Phosphoribosylglycinami 39.3 48 0.0016 27.9 5.5 47 94-140 14-60 (211)
259 3pdu_A 3-hydroxyisobutyrate de 39.3 16 0.00056 32.4 2.8 34 4-42 1-34 (287)
260 1ks9_A KPA reductase;, 2-dehyd 39.3 23 0.0008 31.2 3.9 33 5-42 1-33 (291)
261 3tov_A Glycosyl transferase fa 39.2 1.1E+02 0.0038 27.9 8.6 99 5-140 186-288 (349)
262 3czc_A RMPB; alpha/beta sandwi 39.2 34 0.0012 25.3 4.1 39 3-41 17-57 (110)
263 2d1p_A TUSD, hypothetical UPF0 39.0 58 0.002 25.3 5.6 43 4-46 12-58 (140)
264 3ic5_A Putative saccharopine d 38.8 26 0.0009 25.6 3.6 35 3-42 4-39 (118)
265 3end_A Light-independent proto 38.8 32 0.0011 30.8 4.7 39 4-42 40-79 (307)
266 1b93_A Protein (methylglyoxal 38.8 1.4E+02 0.0049 23.5 9.1 97 2-137 9-118 (152)
267 3of5_A Dethiobiotin synthetase 38.7 33 0.0011 29.2 4.6 35 5-39 4-40 (228)
268 3ew7_A LMO0794 protein; Q8Y8U8 38.6 32 0.0011 28.6 4.5 34 5-42 1-34 (221)
269 3aek_B Light-independent proto 38.5 99 0.0034 30.2 8.4 27 110-139 348-374 (525)
270 1ydh_A AT5G11950; structural g 38.5 49 0.0017 28.0 5.5 40 2-41 7-50 (216)
271 1efp_B ETF, protein (electron 38.5 1.9E+02 0.0066 24.9 11.2 30 111-140 113-148 (252)
272 2x4g_A Nucleoside-diphosphate- 38.4 32 0.0011 31.1 4.8 36 3-42 12-47 (342)
273 3h2s_A Putative NADH-flavin re 38.3 33 0.0011 28.7 4.5 34 5-42 1-34 (224)
274 1yb4_A Tartronic semialdehyde 37.9 28 0.00096 30.8 4.2 32 3-39 2-33 (295)
275 2pju_A Propionate catabolism o 37.7 42 0.0014 28.6 5.0 41 93-140 140-180 (225)
276 4hkt_A Inositol 2-dehydrogenas 37.7 1.3E+02 0.0044 27.0 8.7 107 276-401 6-121 (331)
277 3qsg_A NAD-binding phosphogluc 37.7 18 0.00063 32.6 2.9 34 3-41 23-57 (312)
278 3sbx_A Putative uncharacterize 37.6 94 0.0032 25.6 6.9 118 263-395 35-165 (189)
279 1t35_A Hypothetical protein YV 37.6 57 0.0019 26.9 5.6 100 263-376 24-133 (191)
280 2bln_A Protein YFBG; transfera 37.4 1.4E+02 0.0047 26.7 8.6 33 5-42 1-33 (305)
281 2wm3_A NMRA-like family domain 37.3 30 0.001 30.7 4.3 39 1-43 2-41 (299)
282 2bon_A Lipid kinase; DAG kinas 37.2 36 0.0012 31.0 4.8 41 1-41 26-66 (332)
283 2raf_A Putative dinucleotide-b 36.8 29 0.00098 29.1 3.8 33 4-41 19-51 (209)
284 3u3x_A Oxidoreductase; structu 36.8 1.1E+02 0.0037 28.1 8.1 109 276-400 29-145 (361)
285 1d4o_A NADP(H) transhydrogenas 36.7 40 0.0014 27.1 4.2 38 4-41 22-62 (184)
286 3ego_A Probable 2-dehydropanto 36.7 24 0.00081 31.8 3.5 41 5-51 3-44 (307)
287 2an1_A Putative kinase; struct 36.6 21 0.00073 31.8 3.1 27 351-377 64-94 (292)
288 1o97_C Electron transferring f 36.4 2.1E+02 0.0073 24.8 10.5 30 111-140 112-147 (264)
289 2jk1_A HUPR, hydrogenase trans 36.2 92 0.0031 23.2 6.6 61 369-434 71-131 (139)
290 3db2_A Putative NADPH-dependen 35.9 1.1E+02 0.0036 28.0 7.9 108 276-401 8-124 (354)
291 1xp8_A RECA protein, recombina 35.8 1.9E+02 0.0065 26.6 9.5 41 6-46 76-116 (366)
292 3t6k_A Response regulator rece 35.7 62 0.0021 24.2 5.4 42 97-142 38-88 (136)
293 3e18_A Oxidoreductase; dehydro 35.7 2.2E+02 0.0076 25.8 10.1 107 276-401 8-123 (359)
294 1wrd_A TOM1, target of MYB pro 35.5 1.1E+02 0.0037 22.3 6.2 31 406-439 2-32 (103)
295 3ga2_A Endonuclease V; alpha-b 35.3 42 0.0014 28.9 4.5 31 110-140 108-145 (246)
296 4gi5_A Quinone reductase; prot 35.1 60 0.0021 28.7 5.7 38 2-39 20-60 (280)
297 3afo_A NADH kinase POS5; alpha 35.0 24 0.00083 33.0 3.3 59 342-422 108-171 (388)
298 3b6i_A Flavoprotein WRBA; flav 34.9 45 0.0015 27.3 4.8 39 4-42 1-41 (198)
299 4hb9_A Similarities with proba 34.8 27 0.00094 32.4 3.7 31 4-39 1-31 (412)
300 1u94_A RECA protein, recombina 34.7 2.4E+02 0.0083 25.7 10.0 40 6-45 65-104 (356)
301 3k96_A Glycerol-3-phosphate de 34.7 16 0.00054 33.9 1.9 41 4-49 29-70 (356)
302 3ruf_A WBGU; rossmann fold, UD 34.6 30 0.001 31.5 3.9 36 3-42 24-59 (351)
303 2fsv_C NAD(P) transhydrogenase 34.5 44 0.0015 27.4 4.2 38 4-41 46-86 (203)
304 3l6d_A Putative oxidoreductase 34.4 18 0.00062 32.5 2.3 34 3-41 8-41 (306)
305 3foj_A Uncharacterized protein 34.3 74 0.0025 22.6 5.3 33 4-40 56-88 (100)
306 3m1a_A Putative dehydrogenase; 34.2 49 0.0017 29.0 5.1 39 1-42 1-39 (281)
307 3rc1_A Sugar 3-ketoreductase; 34.1 1.1E+02 0.0036 28.0 7.6 110 275-401 29-147 (350)
308 3d3j_A Enhancer of mRNA-decapp 34.1 34 0.0012 30.8 4.0 34 5-41 133-168 (306)
309 2f00_A UDP-N-acetylmuramate--L 34.1 52 0.0018 31.8 5.7 36 1-40 16-51 (491)
310 2b69_A UDP-glucuronate decarbo 34.0 40 0.0014 30.6 4.6 35 3-41 26-60 (343)
311 1xrs_B D-lysine 5,6-aminomutas 34.0 31 0.0011 30.2 3.6 49 3-51 119-176 (262)
312 3ehd_A Uncharacterized conserv 33.9 87 0.003 25.0 6.0 39 3-41 3-42 (162)
313 1z82_A Glycerol-3-phosphate de 33.8 29 0.001 31.6 3.6 33 4-41 14-46 (335)
314 3vps_A TUNA, NAD-dependent epi 33.8 25 0.00086 31.4 3.2 35 4-42 7-41 (321)
315 2c20_A UDP-glucose 4-epimerase 33.8 39 0.0013 30.3 4.5 34 4-41 1-34 (330)
316 1djl_A Transhydrogenase DIII; 33.7 46 0.0016 27.4 4.2 38 4-41 45-85 (207)
317 3fwz_A Inner membrane protein 33.5 22 0.00075 27.5 2.4 33 5-42 8-40 (140)
318 3n0v_A Formyltetrahydrofolate 33.3 1.3E+02 0.0044 26.6 7.6 44 94-139 102-145 (286)
319 3g0o_A 3-hydroxyisobutyrate de 33.2 25 0.00085 31.5 3.0 34 3-41 6-39 (303)
320 4e5s_A MCCFLIKE protein (BA_56 33.2 56 0.0019 29.7 5.3 73 287-378 62-136 (331)
321 3d3k_A Enhancer of mRNA-decapp 33.0 36 0.0012 29.7 3.9 34 5-41 86-121 (259)
322 1jzt_A Hypothetical 27.5 kDa p 32.9 31 0.0011 29.9 3.4 34 5-41 59-94 (246)
323 2hmt_A YUAA protein; RCK, KTN, 32.9 23 0.0008 27.0 2.5 33 4-41 6-38 (144)
324 3dme_A Conserved exported prot 32.8 27 0.00091 31.9 3.2 36 1-41 1-36 (369)
325 2dpo_A L-gulonate 3-dehydrogen 32.8 22 0.00075 32.3 2.5 33 4-41 6-38 (319)
326 1jkx_A GART;, phosphoribosylgl 32.7 2.2E+02 0.0074 23.8 12.1 106 5-140 1-109 (212)
327 3gvi_A Malate dehydrogenase; N 32.7 2.4E+02 0.0082 25.4 9.5 36 3-43 6-42 (324)
328 3kcn_A Adenylate cyclase homol 32.6 1E+02 0.0034 23.5 6.3 52 369-426 75-127 (151)
329 3dqp_A Oxidoreductase YLBE; al 32.5 38 0.0013 28.3 3.9 34 5-42 1-34 (219)
330 4b4t_W RPN10, 26S proteasome r 32.5 1.3E+02 0.0043 26.4 7.3 64 7-70 111-177 (268)
331 3r6d_A NAD-dependent epimerase 32.5 52 0.0018 27.4 4.8 36 3-42 3-40 (221)
332 2r6j_A Eugenol synthase 1; phe 32.5 46 0.0016 29.7 4.8 33 6-42 13-45 (318)
333 3ors_A N5-carboxyaminoimidazol 32.4 1.9E+02 0.0065 23.0 10.6 140 276-439 5-154 (163)
334 3nbm_A PTS system, lactose-spe 32.4 40 0.0014 24.9 3.5 37 3-39 5-41 (108)
335 3ip0_A 2-amino-4-hydroxy-6-hyd 32.3 55 0.0019 26.1 4.5 29 276-304 2-30 (158)
336 2o8n_A APOA-I binding protein; 32.3 42 0.0014 29.4 4.2 34 5-41 80-115 (265)
337 3c1o_A Eugenol synthase; pheny 32.2 43 0.0015 29.9 4.5 35 4-42 4-38 (321)
338 3pfn_A NAD kinase; structural 32.0 23 0.00079 32.7 2.5 28 349-376 107-138 (365)
339 3c1a_A Putative oxidoreductase 31.9 2.7E+02 0.0092 24.6 9.9 106 275-400 12-126 (315)
340 3qrx_B Melittin; calcium-bindi 31.8 14 0.00048 18.7 0.5 17 359-375 1-17 (26)
341 2uyy_A N-PAC protein; long-cha 31.7 34 0.0012 30.7 3.7 34 3-41 29-62 (316)
342 1txg_A Glycerol-3-phosphate de 31.7 37 0.0013 30.7 4.0 31 5-40 1-31 (335)
343 3dtt_A NADP oxidoreductase; st 31.6 31 0.0011 29.7 3.3 34 4-42 19-52 (245)
344 1uan_A Hypothetical protein TT 31.5 45 0.0015 28.4 4.2 38 4-41 1-38 (227)
345 3tl2_A Malate dehydrogenase; c 31.5 2.3E+02 0.0078 25.4 9.1 34 3-41 7-41 (315)
346 4ds3_A Phosphoribosylglycinami 31.4 71 0.0024 26.8 5.3 46 94-139 19-64 (209)
347 1hyq_A MIND, cell division inh 31.4 44 0.0015 28.9 4.3 38 6-43 4-42 (263)
348 3m6m_D Sensory/regulatory prot 31.4 58 0.002 24.7 4.6 33 110-142 57-100 (143)
349 3lk7_A UDP-N-acetylmuramoylala 31.4 90 0.0031 29.7 6.8 32 4-40 9-40 (451)
350 2rir_A Dipicolinate synthase, 31.3 60 0.0021 28.9 5.2 34 1-39 4-37 (300)
351 1xjc_A MOBB protein homolog; s 31.2 81 0.0028 25.4 5.4 40 4-43 4-43 (169)
352 3ea0_A ATPase, para family; al 31.2 45 0.0016 28.3 4.3 41 3-43 2-45 (245)
353 3pef_A 6-phosphogluconate dehy 31.2 42 0.0015 29.6 4.2 32 5-41 2-33 (287)
354 3i4f_A 3-oxoacyl-[acyl-carrier 31.1 62 0.0021 27.9 5.2 37 3-42 5-41 (264)
355 1c0p_A D-amino acid oxidase; a 30.9 41 0.0014 30.8 4.2 36 1-41 3-38 (363)
356 2qx0_A 7,8-dihydro-6-hydroxyme 30.8 82 0.0028 25.1 5.3 29 276-304 3-31 (159)
357 2h31_A Multifunctional protein 30.7 2.7E+02 0.0091 26.2 9.5 136 275-439 266-412 (425)
358 2gt1_A Lipopolysaccharide hept 30.6 1.7E+02 0.0058 26.0 8.3 27 112-140 254-280 (326)
359 1f9y_A HPPK, protein (6-hydrox 30.5 61 0.0021 25.8 4.5 28 276-303 2-29 (158)
360 1p3d_A UDP-N-acetylmuramate--a 30.5 52 0.0018 31.7 5.0 36 2-41 16-51 (475)
361 4ehi_A Bifunctional purine bio 30.4 95 0.0032 30.0 6.4 41 5-51 25-65 (534)
362 3jzd_A Iron-containing alcohol 30.2 1.5E+02 0.0053 27.1 7.9 110 1-142 2-123 (358)
363 3uhj_A Probable glycerol dehyd 30.1 2.6E+02 0.0089 25.9 9.5 93 23-142 43-140 (387)
364 3uk7_A Class I glutamine amido 29.9 70 0.0024 29.8 5.6 40 1-41 9-48 (396)
365 3ax6_A Phosphoribosylaminoimid 29.9 77 0.0026 29.2 5.9 34 4-42 1-34 (380)
366 3gg2_A Sugar dehydrogenase, UD 29.8 38 0.0013 32.4 3.8 33 5-42 3-35 (450)
367 3bbn_B Ribosomal protein S2; s 29.8 2.6E+02 0.0089 23.8 10.7 31 111-141 157-189 (231)
368 3lua_A Response regulator rece 29.8 96 0.0033 23.1 5.7 36 1-40 1-37 (140)
369 2c5m_A CTP synthase; cytidine 29.8 34 0.0012 29.7 3.0 43 3-45 21-66 (294)
370 3k9g_A PF-32 protein; ssgcid, 29.7 50 0.0017 28.6 4.3 41 3-44 25-67 (267)
371 3eme_A Rhodanese-like domain p 29.6 73 0.0025 22.7 4.6 33 4-40 56-88 (103)
372 3qua_A Putative uncharacterize 29.6 78 0.0027 26.3 5.2 101 263-378 44-155 (199)
373 3kuu_A Phosphoribosylaminoimid 29.6 2.2E+02 0.0076 22.9 12.6 144 276-443 14-167 (174)
374 1vma_A Cell division protein F 29.6 2.2E+02 0.0076 25.3 8.7 41 5-45 104-145 (306)
375 3sx6_A Sulfide-quinone reducta 29.5 41 0.0014 31.9 4.0 38 1-43 1-41 (437)
376 3bfj_A 1,3-propanediol oxidore 29.4 3.1E+02 0.011 25.2 10.1 21 22-42 22-43 (387)
377 2xz9_A Phosphoenolpyruvate-pro 29.4 2.6E+02 0.0088 25.2 9.0 81 363-458 240-320 (324)
378 2ark_A Flavodoxin; FMN, struct 29.3 56 0.0019 26.6 4.3 40 3-42 3-44 (188)
379 1orr_A CDP-tyvelose-2-epimeras 29.3 51 0.0018 29.7 4.5 33 4-40 1-33 (347)
380 1i36_A Conserved hypothetical 29.2 37 0.0013 29.5 3.4 30 5-39 1-30 (264)
381 3sc4_A Short chain dehydrogena 29.2 1.3E+02 0.0045 26.3 7.1 35 5-42 9-43 (285)
382 2m1z_A LMO0427 protein; homolo 29.2 58 0.002 23.9 3.8 39 4-42 2-43 (106)
383 3f2v_A General stress protein 29.2 33 0.0011 28.4 2.8 37 4-40 1-38 (192)
384 4ezb_A Uncharacterized conserv 29.2 38 0.0013 30.6 3.5 33 4-41 24-57 (317)
385 1u7z_A Coenzyme A biosynthesis 29.1 44 0.0015 28.5 3.6 23 20-42 36-58 (226)
386 2pn1_A Carbamoylphosphate synt 29.1 65 0.0022 28.9 5.2 34 3-42 3-38 (331)
387 3op4_A 3-oxoacyl-[acyl-carrier 29.0 67 0.0023 27.5 5.0 34 5-41 9-42 (248)
388 3evn_A Oxidoreductase, GFO/IDH 28.9 2.4E+02 0.0083 25.1 9.1 62 339-401 56-125 (329)
389 3f5d_A Protein YDEA; unknow pr 28.9 48 0.0016 27.7 3.9 39 4-43 3-42 (206)
390 2yvq_A Carbamoyl-phosphate syn 28.9 1.8E+02 0.0063 22.4 7.1 28 277-307 27-54 (143)
391 2an1_A Putative kinase; struct 28.8 54 0.0018 29.1 4.4 39 1-39 1-41 (292)
392 4dgk_A Phytoene dehydrogenase; 28.8 23 0.0008 34.2 2.1 33 4-41 1-33 (501)
393 2z04_A Phosphoribosylaminoimid 28.8 60 0.0021 29.7 4.9 35 4-43 1-35 (365)
394 3oh8_A Nucleoside-diphosphate 28.4 55 0.0019 31.9 4.8 35 4-42 147-181 (516)
395 3hn7_A UDP-N-acetylmuramate-L- 28.4 52 0.0018 32.2 4.6 35 3-41 18-52 (524)
396 3li6_A Calcium-binding protein 28.4 1.1E+02 0.0037 19.0 5.0 54 400-458 10-63 (66)
397 3dqz_A Alpha-hydroxynitrIle ly 28.3 44 0.0015 28.1 3.7 41 1-42 1-41 (258)
398 2qxy_A Response regulator; reg 28.2 81 0.0028 23.6 5.0 36 1-40 1-36 (142)
399 2qh9_A UPF0215 protein AF_1433 28.1 1.1E+02 0.0037 25.1 5.7 28 112-139 65-98 (184)
400 2vns_A Metalloreductase steap3 28.1 39 0.0013 28.4 3.2 33 4-41 28-60 (215)
401 2nly_A BH1492 protein, diverge 28.0 2.9E+02 0.0098 23.7 9.5 38 94-137 115-155 (245)
402 3cmu_A Protein RECA, recombina 28.0 2.9E+02 0.01 32.0 10.8 42 3-44 1426-1467(2050)
403 2vrn_A Protease I, DR1199; cys 28.0 1.5E+02 0.005 24.0 6.8 39 3-42 8-46 (190)
404 1t5b_A Acyl carrier protein ph 28.0 61 0.0021 26.5 4.4 38 4-41 1-44 (201)
405 1jay_A Coenzyme F420H2:NADP+ o 28.0 50 0.0017 27.4 3.9 33 5-41 1-33 (212)
406 3mjf_A Phosphoribosylamine--gl 28.0 1.1E+02 0.0037 28.9 6.7 26 3-33 2-27 (431)
407 1byi_A Dethiobiotin synthase; 27.7 60 0.0021 27.1 4.4 32 7-38 4-36 (224)
408 3ezy_A Dehydrogenase; structur 27.7 1.6E+02 0.0053 26.7 7.5 62 339-401 53-122 (344)
409 3cmw_A Protein RECA, recombina 27.7 4.3E+02 0.015 30.1 11.9 104 7-139 386-517 (1706)
410 3slg_A PBGP3 protein; structur 27.6 48 0.0016 30.4 4.0 36 3-42 23-59 (372)
411 3dff_A Teicoplanin pseudoaglyc 27.6 66 0.0023 28.3 4.7 39 4-42 7-45 (273)
412 2qs7_A Uncharacterized protein 27.6 79 0.0027 24.6 4.7 45 5-49 8-53 (144)
413 3tqr_A Phosphoribosylglycinami 27.6 86 0.0029 26.4 5.2 46 94-140 17-62 (215)
414 3i6i_A Putative leucoanthocyan 27.6 52 0.0018 29.9 4.2 35 4-42 10-44 (346)
415 2ab0_A YAJL; DJ-1/THIJ superfa 27.5 1.2E+02 0.0043 24.9 6.3 37 5-42 3-39 (205)
416 3l4b_C TRKA K+ channel protien 27.4 23 0.00077 29.9 1.6 33 5-42 1-33 (218)
417 1rtt_A Conserved hypothetical 27.4 31 0.0011 28.3 2.4 39 1-40 3-44 (193)
418 2z1d_A Hydrogenase expression/ 27.3 3.3E+02 0.011 24.9 9.0 75 266-364 132-207 (372)
419 3oow_A Phosphoribosylaminoimid 27.2 2.4E+02 0.0082 22.5 13.3 144 276-443 7-160 (166)
420 3c3m_A Response regulator rece 27.2 1E+02 0.0035 22.9 5.4 32 110-141 46-86 (138)
421 1t2d_A LDH-P, L-lactate dehydr 27.2 39 0.0013 30.6 3.2 37 1-42 1-38 (322)
422 3qbc_A 2-amino-4-hydroxy-6-hyd 27.1 76 0.0026 25.3 4.5 28 276-303 6-33 (161)
423 4fyk_A Deoxyribonucleoside 5'- 26.8 2.3E+02 0.0079 22.2 9.8 29 112-140 69-102 (152)
424 2ahr_A Putative pyrroline carb 26.8 40 0.0014 29.2 3.1 34 3-41 2-35 (259)
425 4e5v_A Putative THUA-like prot 26.6 76 0.0026 28.0 4.9 38 3-41 3-43 (281)
426 3p0r_A Azoreductase; structura 26.5 61 0.0021 27.1 4.1 37 4-40 4-47 (211)
427 1cbk_A Protein (7,8-dihydro-6- 26.4 80 0.0027 25.2 4.5 29 276-304 3-31 (160)
428 2gas_A Isoflavone reductase; N 26.4 51 0.0018 29.1 3.9 35 4-42 2-36 (307)
429 4edh_A DTMP kinase, thymidylat 26.2 2.8E+02 0.0096 23.0 11.3 38 5-42 7-44 (213)
430 1y56_B Sarcosine oxidase; dehy 26.2 37 0.0013 31.3 3.0 35 3-42 4-38 (382)
431 1nks_A Adenylate kinase; therm 25.9 66 0.0022 25.9 4.2 36 4-39 1-36 (194)
432 1vmd_A MGS, methylglyoxal synt 25.9 2.6E+02 0.0091 22.6 8.3 94 5-137 28-134 (178)
433 4e08_A DJ-1 beta; flavodoxin-l 25.8 1.5E+02 0.0052 23.9 6.5 37 5-42 6-42 (190)
434 1vhq_A Enhancing lycopene bios 25.8 1.4E+02 0.0048 25.2 6.4 39 3-42 5-48 (232)
435 2hpv_A FMN-dependent NADH-azor 25.7 66 0.0023 26.6 4.2 37 4-40 1-44 (208)
436 2glx_A 1,5-anhydro-D-fructose 25.7 3.1E+02 0.011 24.4 9.2 60 340-400 52-119 (332)
437 3hbl_A Pyruvate carboxylase; T 25.5 2.1E+02 0.0073 31.1 8.9 39 1-44 1-39 (1150)
438 3dfi_A Pseudoaglycone deacetyl 25.5 83 0.0028 27.6 5.0 39 4-42 7-45 (270)
439 1iow_A DD-ligase, DDLB, D-ALA\ 25.3 96 0.0033 27.3 5.5 37 5-41 3-43 (306)
440 1sqs_A Conserved hypothetical 25.3 71 0.0024 27.3 4.4 37 4-40 1-41 (242)
441 3nxa_A Protein S100-A16; S100 25.3 74 0.0025 22.8 3.9 60 404-464 28-88 (100)
442 4eg0_A D-alanine--D-alanine li 25.3 1.1E+02 0.0038 27.3 6.0 39 4-42 13-55 (317)
443 3gi1_A LBP, laminin-binding pr 25.2 3.4E+02 0.012 23.8 9.0 80 32-140 178-259 (286)
444 3i7m_A XAA-Pro dipeptidase; st 25.1 34 0.0012 26.3 2.1 34 16-49 1-34 (140)
445 2plr_A DTMP kinase, probable t 25.1 78 0.0027 25.9 4.6 39 1-40 1-39 (213)
446 2q62_A ARSH; alpha/beta, flavo 25.1 84 0.0029 27.1 4.8 38 3-40 33-73 (247)
447 1meo_A Phosophoribosylglycinam 25.1 1.1E+02 0.0037 25.7 5.3 46 95-140 13-58 (209)
448 2c5a_A GDP-mannose-3', 5'-epim 25.0 73 0.0025 29.3 4.8 36 3-42 28-63 (379)
449 1vpd_A Tartronate semialdehyde 25.0 74 0.0025 28.1 4.7 32 5-41 6-37 (299)
450 2l82_A Designed protein OR32; 25.0 1.6E+02 0.0054 21.4 5.3 34 276-313 3-36 (162)
451 3orf_A Dihydropteridine reduct 24.9 82 0.0028 26.9 4.8 36 4-42 21-56 (251)
452 3cmu_A Protein RECA, recombina 24.9 2.9E+02 0.0099 32.1 10.0 45 4-48 1081-1125(2050)
453 3iv7_A Alcohol dehydrogenase I 24.8 4E+02 0.014 24.3 10.2 43 96-142 77-122 (364)
454 2pk3_A GDP-6-deoxy-D-LYXO-4-he 24.8 70 0.0024 28.4 4.5 35 3-41 11-45 (321)
455 3svl_A Protein YIEF; E. coli C 24.8 19 0.00065 29.9 0.5 34 1-36 1-38 (193)
456 2gkg_A Response regulator homo 24.7 71 0.0024 23.2 3.9 47 369-422 79-125 (127)
457 3tqq_A Methionyl-tRNA formyltr 24.7 71 0.0024 28.8 4.4 34 4-42 2-35 (314)
458 4h15_A Short chain alcohol deh 24.7 97 0.0033 26.9 5.2 34 5-41 11-44 (261)
459 1ehi_A LMDDL2, D-alanine:D-lac 24.6 67 0.0023 29.7 4.4 40 1-41 1-45 (377)
460 1y1p_A ARII, aldehyde reductas 24.6 82 0.0028 28.2 5.0 35 4-42 11-45 (342)
461 3lay_A Zinc resistance-associa 24.4 1.9E+02 0.0064 23.4 6.4 36 426-461 91-126 (175)
462 3k5i_A Phosphoribosyl-aminoimi 24.4 98 0.0034 28.9 5.6 34 1-39 21-54 (403)
463 2q1w_A Putative nucleotide sug 24.3 75 0.0026 28.5 4.6 35 3-41 20-54 (333)
464 3l77_A Short-chain alcohol deh 24.3 79 0.0027 26.6 4.6 34 5-41 2-35 (235)
465 1t1j_A Hypothetical protein; s 24.3 99 0.0034 23.5 4.4 33 4-36 7-47 (125)
466 2hna_A Protein MIOC, flavodoxi 24.2 89 0.003 24.1 4.5 35 5-39 2-37 (147)
467 2vzf_A NADH-dependent FMN redu 24.2 74 0.0025 26.1 4.2 38 4-41 2-43 (197)
468 2oxj_A Hybrid alpha/beta pepti 24.2 1E+02 0.0034 17.1 3.2 27 410-436 4-31 (34)
469 3dii_A Short-chain dehydrogena 24.2 76 0.0026 27.1 4.5 33 6-41 3-35 (247)
470 1kyq_A Met8P, siroheme biosynt 24.2 1.6E+02 0.0056 25.8 6.5 85 350-439 106-210 (274)
471 1nn5_A Similar to deoxythymidy 24.1 1.1E+02 0.0038 25.0 5.4 40 2-41 7-46 (215)
472 3nhv_A BH2092 protein; alpha-b 24.1 94 0.0032 24.0 4.5 41 4-47 72-112 (144)
473 3rpe_A MDAB, modulator of drug 24.0 79 0.0027 26.7 4.3 38 3-40 24-68 (218)
474 1rkx_A CDP-glucose-4,6-dehydra 24.0 53 0.0018 29.8 3.6 36 3-42 8-43 (357)
475 3grc_A Sensor protein, kinase; 24.0 2.2E+02 0.0074 20.9 7.5 37 1-41 3-39 (140)
476 3ib6_A Uncharacterized protein 24.0 2.7E+02 0.0094 22.1 11.8 98 21-140 39-143 (189)
477 2rjn_A Response regulator rece 24.0 30 0.001 26.7 1.6 62 369-436 78-140 (154)
478 3a10_A Response regulator; pho 24.0 1.6E+02 0.0054 20.8 5.7 32 110-141 44-82 (116)
479 1u2p_A Ptpase, low molecular w 24.0 83 0.0028 25.1 4.3 40 1-40 1-43 (163)
480 3kcq_A Phosphoribosylglycinami 23.8 95 0.0033 26.2 4.8 47 94-140 20-66 (215)
481 1sb8_A WBPP; epimerase, 4-epim 23.8 80 0.0027 28.6 4.8 36 3-42 26-61 (352)
482 3tl4_X Glutaminyl-tRNA synthet 23.7 55 0.0019 26.9 3.1 45 384-438 103-154 (187)
483 2cvz_A Dehydrogenase, 3-hydrox 23.7 43 0.0015 29.4 2.8 32 4-41 1-32 (289)
484 1wv9_A Rhodanese homolog TT165 23.7 79 0.0027 22.1 3.7 32 5-40 54-85 (94)
485 3d4o_A Dipicolinate synthase s 23.7 99 0.0034 27.3 5.2 34 1-39 2-35 (293)
486 3mcu_A Dipicolinate synthase, 23.6 69 0.0023 26.9 3.8 59 365-424 116-186 (207)
487 3tl3_A Short-chain type dehydr 23.6 1.4E+02 0.0049 25.4 6.2 33 5-40 9-41 (257)
488 2z1m_A GDP-D-mannose dehydrata 23.5 70 0.0024 28.7 4.3 34 5-42 4-37 (345)
489 4h1h_A LMO1638 protein; MCCF-l 23.5 95 0.0033 28.1 5.1 72 287-377 62-135 (327)
490 3rht_A (gatase1)-like protein; 23.5 42 0.0014 29.3 2.5 37 3-43 3-41 (259)
491 3g17_A Similar to 2-dehydropan 23.4 23 0.00079 31.6 0.9 32 5-41 3-34 (294)
492 1u9c_A APC35852; structural ge 23.4 1.8E+02 0.0061 24.3 6.6 38 5-42 6-52 (224)
493 1z0s_A Probable inorganic poly 23.4 23 0.00077 31.4 0.8 51 351-421 69-122 (278)
494 3sr3_A Microcin immunity prote 23.4 88 0.003 28.5 4.8 72 288-378 64-137 (336)
495 3ia7_A CALG4; glycosysltransfe 23.3 1.6E+02 0.0056 26.8 7.0 34 276-311 7-40 (402)
496 3m2p_A UDP-N-acetylglucosamine 23.3 64 0.0022 28.6 3.9 33 5-41 3-35 (311)
497 1jkx_A GART;, phosphoribosylgl 23.2 1.3E+02 0.0045 25.2 5.5 45 95-139 13-57 (212)
498 3u9l_A 3-oxoacyl-[acyl-carrier 23.2 83 0.0028 28.4 4.6 37 1-40 1-37 (324)
499 3qua_A Putative uncharacterize 23.2 1.3E+02 0.0044 25.0 5.4 37 4-41 22-62 (199)
500 3pnx_A Putative sulfurtransfer 23.1 1.2E+02 0.0042 24.1 5.0 45 5-49 5-50 (160)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=2.5e-67 Score=513.43 Aligned_cols=433 Identities=27% Similarity=0.421 Sum_probs=351.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCC--CEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERA--IKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG--H~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
++.||+++|+|+.||++|++.||+.|++|| |.|||++++.+...+.+.. .....+++|+.+|+++++......+
T Consensus 12 ~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~----~~~~~~i~~~~ipdglp~~~~~~~~ 87 (454)
T 3hbf_A 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRS----NEFLPNIKYYNVHDGLPKGYVSSGN 87 (454)
T ss_dssp CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSS----SCCCTTEEEEECCCCCCTTCCCCSC
T ss_pred CCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhccc----ccCCCCceEEecCCCCCCCccccCC
Confidence 368999999999999999999999999999 9999999976655543321 0113579999999988765432233
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
....+..+...+...+++.++.+.... ..++|+||+|.+..|+..+|+.+|||++.++++++.....+.+++.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~ 166 (454)
T 3hbf_A 88 PREPIFLFIKAMQENFKHVIDEAVAET-GKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTG 166 (454)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcC
Confidence 444455555555656667666643221 1579999999999999999999999999999999999888888766544210
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhh----hccCC
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPA----CDLIP 236 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~----~~~~p 236 (468)
.. .......+..+|+++.+..+++++.+..+ ....+...+.+..+.+..++.+++||+++||++. ++..|
T Consensus 167 ~~----~~~~~~~~~~iPg~p~~~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~ 240 (454)
T 3hbf_A 167 SK----EVHDVKSIDVLPGFPELKASDLPEGVIKD--IDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFK 240 (454)
T ss_dssp HH----HHTTSSCBCCSTTSCCBCGGGSCTTSSSC--TTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSS
T ss_pred CC----ccccccccccCCCCCCcChhhCchhhccC--CchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCC
Confidence 00 00111223458999888888888543321 2233555666777788899999999999999863 35568
Q ss_pred CceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 012212 237 NILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMN 316 (468)
Q Consensus 237 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~ 316 (468)
++++|||++...... .+..+.++.+||+.++++++|||+|||....+.+++.+++.+++..+.+++|+++..
T Consensus 241 ~v~~vGPl~~~~~~~-----~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~--- 312 (454)
T 3hbf_A 241 LLLNVGPFNLTTPQR-----KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD--- 312 (454)
T ss_dssp CEEECCCHHHHSCCS-----CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC---
T ss_pred CEEEECCcccccccc-----cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc---
Confidence 999999998643321 123467899999998888999999999988889999999999999999999999875
Q ss_pred CcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhce
Q 012212 317 GSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIG 396 (468)
Q Consensus 317 ~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g 396 (468)
....+|+++.++.++|+++++|+||.++|+|+++++||||||+||++|++++|||+|++|+++||+.||+++++.||+|
T Consensus 313 -~~~~lp~~~~~~~~~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~G 391 (454)
T 3hbf_A 313 -PKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391 (454)
T ss_dssp -HHHHSCTTHHHHTTTTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSE
T ss_pred -chhcCCHhHHhhcCCceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCee
Confidence 3346889998999999999999999999999999999999999999999999999999999999999999999855999
Q ss_pred eEeeccCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 397 LQFFADENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 397 ~~l~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
+.++... +++++|+++|+++|+|+ +||+||++|++++++++.+||||.+++++|++++.
T Consensus 392 v~l~~~~---~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 392 VGVDNGV---LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp EECGGGS---CCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred EEecCCC---CCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 9998766 99999999999999987 79999999999999999999999999999999874
No 2
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.7e-64 Score=504.07 Aligned_cols=452 Identities=33% Similarity=0.660 Sum_probs=334.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc---CCC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA---ADR 78 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~ 78 (468)
++++||+|+|+|+.||++|++.||++|++|||+|||++++.+...+.+...........+++|+.++++++... ...
T Consensus 6 ~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~~~~~~~~ 85 (482)
T 2pq6_A 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVS 85 (482)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------
T ss_pred CCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCcccccCcc
Confidence 34579999999999999999999999999999999999998776664421000000013799999997665421 122
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhc
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEA 158 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (468)
.+...++..+...+.+.++++++.+.......+||+||+|.+..|+..+|+.+|||++.++++++.......++|.....
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (482)
T 2pq6_A 86 QDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVER 165 (482)
T ss_dssp CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhc
Confidence 34445555554567788889998886420015799999999999999999999999999999998777666555654444
Q ss_pred CCCCCCCc--ccc--cCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhh---
Q 012212 159 GIIDPNGF--AIL--NDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPA--- 231 (468)
Q Consensus 159 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~--- 231 (468)
+..+.... ... .......+|+++.+...+++ .+.............+....+....++.+++||+++||++.
T Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~~ 244 (482)
T 2pq6_A 166 GIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIV-DFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244 (482)
T ss_dssp TCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSC-GGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHH
T ss_pred CCCCCccccccccccccCccccCCCCCCCchHHCc-hhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHHH
Confidence 44332110 000 01112234555545444444 22221111122333344455566789999999999999862
Q ss_pred -hccCCCceeeccccCC-CCCC------CCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC
Q 012212 232 -CDLIPNILPIGPLLAS-NHSG------DLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ 303 (468)
Q Consensus 232 -~~~~p~v~~vGpl~~~-~~~~------~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (468)
++..+++++|||++.. .... ......|+.+.++.+|++.++++++|||+|||....+.+.+.+++.++++.+
T Consensus 245 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~ 324 (482)
T 2pq6_A 245 LSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCK 324 (482)
T ss_dssp HHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHHhcC
Confidence 3444899999999763 1110 0001234556678999999888889999999997778888999999999999
Q ss_pred CCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchh
Q 012212 304 KPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQY 383 (468)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~ 383 (468)
.+++|+++.....+....+|+++.++.++|+++++|+||.++|+|+++++||||||+||++||+++|||+|++|+..||+
T Consensus 325 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P~~~dQ~ 404 (482)
T 2pq6_A 325 KSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQP 404 (482)
T ss_dssp CEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHH
T ss_pred CcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEecCcccchH
Confidence 99999997541111122378888888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH-HHhhceeEeeccCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 384 QNRNYIC-EAWKIGLQFFADENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 384 ~na~rv~-~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
.||++++ + +|+|+.++ .+ +++++|.++|+++|+|+ +||+||+++++++++++.+||||.+++++|+++++.
T Consensus 405 ~na~~~~~~-~G~g~~l~-~~---~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~~~ 479 (482)
T 2pq6_A 405 TDCRFICNE-WEIGMEID-TN---VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLL 479 (482)
T ss_dssp HHHHHHHHT-SCCEEECC-SS---CCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-hCEEEEEC-CC---CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999997 6 59999998 55 99999999999999999 699999999999999999999999999999998753
No 3
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=1.4e-61 Score=481.19 Aligned_cols=437 Identities=28% Similarity=0.443 Sum_probs=329.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCc--chHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQF--IHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~--~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
+++||+++|+++.||++|++.||++|++| ||+|||++++. +...+.+... ....+++|+.++...........
T Consensus 5 ~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~----~~~~~i~~~~l~~~~~~~~~~~~ 80 (480)
T 2vch_A 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD----SLPSSISSVFLPPVDLTDLSSST 80 (480)
T ss_dssp -CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-----CCTTEEEEECCCCCCTTSCTTC
T ss_pred CCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc----ccCCCceEEEcCCCCCCCCCCch
Confidence 45899999999999999999999999998 99999999987 4455544210 11257999999865321111122
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCc-eEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhc
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPI-RCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEA 158 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~p-Dlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (468)
++...+......+.+.++++++.+... .++ |+||+|.+..|+..+|+.+|||++.+++++........++|.....
T Consensus 81 ~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (480)
T 2vch_A 81 RIESRISLTVTRSNPELRKVFDSFVEG---GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET 157 (480)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHHHHHHT---TCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHhccC---CCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhc
Confidence 343333334455667788888776421 468 9999999999999999999999999999998877777666654432
Q ss_pred CCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhc-----
Q 012212 159 GIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACD----- 233 (468)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~----- 233 (468)
...+ +. .. ......|+++++...+++..+. ... ...+..+......+...+.+++|++.++|.+...
T Consensus 158 ~~~~---~~-~~-~~~~~~Pg~~p~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~ 229 (480)
T 2vch_A 158 VSCE---FR-EL-TEPLMLPGCVPVAGKDFLDPAQ-DRK--DDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEP 229 (480)
T ss_dssp CCSC---GG-GC-SSCBCCTTCCCBCGGGSCGGGS-CTT--SHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSC
T ss_pred CCCc---cc-cc-CCcccCCCCCCCChHHCchhhh-cCC--chHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhc
Confidence 2111 00 00 1112456666555555553221 111 1233334445556778889999999999975321
Q ss_pred --cCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012212 234 --LIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIR 311 (468)
Q Consensus 234 --~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 311 (468)
..+++++|||++...... ..+..+.++.+||+.++++++|||||||....+.+++.+++.+++.++.+++|+++
T Consensus 230 ~~~~~~v~~vGpl~~~~~~~----~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~ 305 (480)
T 2vch_A 230 GLDKPPVYPVGPLVNIGKQE----AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIR 305 (480)
T ss_dssp CTTCCCEEECCCCCCCSCSC----C-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCcEEEEeccccccccc----cCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 137899999998753211 01235678999999988888999999999878899999999999999999999998
Q ss_pred CCCCC-----------Cc-ccCCchhHHHHhCCCceEE-cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc
Q 012212 312 QDFMN-----------GS-RAKFPDGFIERVSNRGKIV-EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY 378 (468)
Q Consensus 312 ~~~~~-----------~~-~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~ 378 (468)
..... .. ...+|+++.+++.++.+++ +|+||.+||+|++|++||||||+||++||+++|||||++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~ 385 (480)
T 2vch_A 306 SPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPL 385 (480)
T ss_dssp CCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred CccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccc
Confidence 65211 11 1357888888887777777 59999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHH-HHHhhceeEeeccCCCccCHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 012212 379 FSDQYQNRNYI-CEAWKIGLQFFADENGIITRQEIQRKVLTLLK---NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFI 454 (468)
Q Consensus 379 ~~DQ~~na~rv-~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~---~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (468)
+.||+.||+++ ++ +|+|+.++..+++.+|+++|+++|+++|+ +++||+||+++++++++++.+||++.+++++||
T Consensus 386 ~~DQ~~na~~l~~~-~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v 464 (480)
T 2vch_A 386 YAEQKMNAVLLSED-IRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVA 464 (480)
T ss_dssp STTHHHHHHHHHHT-TCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHH
T ss_pred cccchHHHHHHHHH-hCeEEEeecccCCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999997 67 69999998763345999999999999998 778999999999999999999999999999999
Q ss_pred HHHHh
Q 012212 455 SDIKM 459 (468)
Q Consensus 455 ~~~~~ 459 (468)
+++++
T Consensus 465 ~~~~~ 469 (480)
T 2vch_A 465 LKWKA 469 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=8.4e-62 Score=479.74 Aligned_cols=437 Identities=26% Similarity=0.455 Sum_probs=328.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCE--EEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIK--VTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~--Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
+++||+++|+|+.||++|++.||+.|++|||+ |||++++.+...+.+.... ....+++|+.++++++........
T Consensus 6 ~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~---~~~~~i~~~~i~~glp~~~~~~~~ 82 (456)
T 2c1x_A 6 TNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMH---TMQCNIKSYDISDGVPEGYVFAGR 82 (456)
T ss_dssp -CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC----------CTTEEEEECCCCCCTTCCCCCC
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccc---cCCCceEEEeCCCCCCCcccccCC
Confidence 46899999999999999999999999999755 5888887554444332100 012579999998876654211223
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhc-C
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEA-G 159 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~-~ 159 (468)
.......+...+...++++++.+.+.. ..+||+||+|.++.|+..+|+.+|||++.++++++.......+.+..... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 161 (456)
T 2c1x_A 83 PQEDIELFTRAAPESFRQGMVMAVAET-GRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIG 161 (456)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHC
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhcc-CCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccC
Confidence 344455555555556777776544221 15799999999999999999999999999999988776655544432211 2
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhh----hccC
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPA----CDLI 235 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~----~~~~ 235 (468)
..... . .....+..+|+++.++..+++..+. .......+.....+..+....++.+++|++++||++. ++..
T Consensus 162 ~~~~~--~-~~~~~~~~~pg~~~~~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~ 237 (456)
T 2c1x_A 162 VSGIQ--G-REDELLNFIPGMSKVRFRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL 237 (456)
T ss_dssp SSCCT--T-CTTCBCTTSTTCTTCBGGGSCTTTS-SSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHS
T ss_pred Ccccc--c-ccccccccCCCCCcccHHhCchhhc-CCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcC
Confidence 11100 0 1112233567777666666653222 1111112223333444556789999999999999863 3445
Q ss_pred CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 012212 236 PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFM 315 (468)
Q Consensus 236 p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 315 (468)
|++++|||++...... .+..+.++.+|++.++++++|||++||....+.+++..++.+++..+.+++|+++..
T Consensus 238 ~~~~~vGpl~~~~~~~-----~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~-- 310 (456)
T 2c1x_A 238 KTYLNIGPFNLITPPP-----VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK-- 310 (456)
T ss_dssp SCEEECCCHHHHC--------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGG--
T ss_pred CCEEEecCcccCcccc-----cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCc--
Confidence 8999999998643211 022356789999988888899999999977788999999999999999999999765
Q ss_pred CCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhc
Q 012212 316 NGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKI 395 (468)
Q Consensus 316 ~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~ 395 (468)
....+|+++.++.++|+++++|+||.++|.|+++++||||||+||++||+++|||+|++|++.||+.||+++++.||+
T Consensus 311 --~~~~l~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~ 388 (456)
T 2c1x_A 311 --ARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEI 388 (456)
T ss_dssp --GGGGSCTTHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCC
T ss_pred --chhhCCHHHHhhcCCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCe
Confidence 334578888888899999999999999999999999999999999999999999999999999999999999994599
Q ss_pred eeEeeccCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 396 GLQFFADENGIITRQEIQRKVLTLLKND---DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 396 g~~l~~~~~~~~t~~~l~~ai~~~l~~~---~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
|+.++..+ ++.++|+++|+++|+|+ +||+||+++++++++++.+||||.+++++||+++.+
T Consensus 389 g~~l~~~~---~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 389 GVRIEGGV---FTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452 (456)
T ss_dssp EEECGGGS---CCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTS
T ss_pred EEEecCCC---cCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 99998766 99999999999999998 799999999999999999999999999999998843
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=7e-59 Score=460.18 Aligned_cols=428 Identities=27% Similarity=0.450 Sum_probs=323.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcch-----HHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIH-----KKIIASLQEKAEDSSSQIKLVTIPDGLELQAA 76 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~-----~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (468)
++||+++|+|+.||++|++.||+.|++| ||+|||++++.+. ..+.... ....+++|+.+|++..+...
T Consensus 9 ~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~-----~~~~~i~~~~lp~~~~~~~~ 83 (463)
T 2acv_A 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL-----ASQPQIQLIDLPEVEPPPQE 83 (463)
T ss_dssp CEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHH-----CSCTTEEEEECCCCCCCCGG
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcc-----cCCCCceEEECCCCCCCccc
Confidence 5799999999999999999999999999 9999999998763 2232211 12257999999976311110
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
...+....+......+.+.++++++.+. ..+||+||+|.+..|+..+|+.+|||++.+++++........++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 159 (463)
T 2acv_A 84 LLKSPEFYILTFLESLIPHVKATIKTIL----SNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159 (463)
T ss_dssp GGGSHHHHHHHHHHHTHHHHHHHHHHHC----CTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSC
T ss_pred ccCCccHHHHHHHHhhhHHHHHHHHhcc----CCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhc
Confidence 0111111122334556667888887761 157999999999999999999999999999999888777666555432
Q ss_pred hcCCCCCCCcccccCCc---ccccCCC-ccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhh
Q 012212 157 EAGIIDPNGFAILNDGL---ISLSDEI-PAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPAC 232 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 232 (468)
..+... . ... ....|++ +.+...+++..+.. + ...+..+......+..++.+++||+++||.+..
T Consensus 160 ~~~~~~------~-~~~~~~~~~~pg~~~~~~~~~l~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~ 228 (463)
T 2acv_A 160 IEEVFD------D-SDRDHQLLNIPGISNQVPSNVLPDACFN-K---DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228 (463)
T ss_dssp TTCCCC------C-SSGGGCEECCTTCSSCEEGGGSCHHHHC-T---TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHH
T ss_pred ccCCCC------C-ccccCceeECCCCCCCCChHHCchhhcC-C---chHHHHHHHHHHhcccCCEEEECCHHHHhHHHH
Confidence 111000 0 011 2345666 55444444421111 1 113334445556677889999999999997643
Q ss_pred cc-------CCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccc-cCCHHHHHHHHHHHHhCCC
Q 012212 233 DL-------IPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVA-VLSQQQFAELALGLESLQK 304 (468)
Q Consensus 233 ~~-------~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~~~~~~~~a~~~~~~ 304 (468)
.+ .+++++|||++........ ...|..+.++.+|++.++++++|||+|||.. ..+.+++.+++.+++..+.
T Consensus 229 ~~l~~~~~p~~~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~ 307 (463)
T 2acv_A 229 DALYDHDEKIPPIYAVGPLLDLKGQPNP-KLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGV 307 (463)
T ss_dssp HHHHHHCTTSCCEEECCCCCCSSCCCBT-TBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhccccCCcEEEeCCCccccccccc-ccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCC
Confidence 22 5799999999865320100 0002345678999999888889999999998 7788899999999999999
Q ss_pred CEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccch
Q 012212 305 PFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQ 382 (468)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ 382 (468)
+++|+++.. ...+|+++.++. ++|+++++|+||.++|.|+++++||||||+||++||+++|||+|++|++.||
T Consensus 308 ~~l~~~~~~-----~~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ 382 (463)
T 2acv_A 308 RFLWSNSAE-----KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382 (463)
T ss_dssp EEEEECCCC-----GGGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTH
T ss_pred cEEEEECCC-----cccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhh
Confidence 999999753 124778887777 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHhhceeEee-ccCCC--ccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 383 YQNRNYI-CEAWKIGLQFF-ADENG--IITRQEIQRKVLTLLK-NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 383 ~~na~rv-~~~lG~g~~l~-~~~~~--~~t~~~l~~ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
+.||+++ ++ +|+|+.+. ..+.+ .++.++|.++|+++|+ +++||+||+++++++++++.+||||.+++++||+++
T Consensus 383 ~~Na~~lv~~-~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~ 461 (463)
T 2acv_A 383 QLNAFRLVKE-WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461 (463)
T ss_dssp HHHHHHHHHT-SCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 9999995 78 69999993 11112 3899999999999997 578999999999999999999999999999999988
Q ss_pred H
Q 012212 458 K 458 (468)
Q Consensus 458 ~ 458 (468)
+
T Consensus 462 ~ 462 (463)
T 2acv_A 462 T 462 (463)
T ss_dssp H
T ss_pred c
Confidence 5
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=2.2e-47 Score=376.46 Aligned_cols=396 Identities=17% Similarity=0.202 Sum_probs=272.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC----
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA---- 76 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---- 76 (468)
|++|+||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+.+. +++|+.++..++....
T Consensus 9 ~m~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~ 78 (424)
T 2iya_A 9 SVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA----------GATPVVYDSILPKESNPEES 78 (424)
T ss_dssp --CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH----------TCEEEECCCCSCCTTCTTCC
T ss_pred CcccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhC----------CCEEEecCccccccccchhh
Confidence 45678999999999999999999999999999999999999988888774 4788888765432210
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
...+....+..+........+++.+.+++ .+||+||+|.+..|+..+|+.+|||++.+++.+......... +...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~-~~~~ 153 (424)
T 2iya_A 79 WPEDQESAMGLFLDEAVRVLPQLEDAYAD----DRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEED-VPAV 153 (424)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTTT----SCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHH-SGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccc-cccc
Confidence 12233344444444444444555555443 679999999988899999999999999998765411100000 0000
Q ss_pred hcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh----------hccccEEEEcCccc
Q 012212 157 EAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA----------VKISNWIINNSVYE 226 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~ 226 (468)
..+..+. +.+ ...|... .... .+.........+...+.+.... ...++.+++++++.
T Consensus 154 ~~~~~~~-~~~-------~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 220 (424)
T 2iya_A 154 QDPTADR-GEE-------AAAPAGT----GDAE-EGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRT 220 (424)
T ss_dssp SCCCC----------------------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTT
T ss_pred ccccccc-ccc-------ccccccc----ccch-hhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchh
Confidence 0000000 000 0000000 0000 0000000011111111121111 12578899999999
Q ss_pred CChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCE
Q 012212 227 LDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPF 306 (468)
Q Consensus 227 le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 306 (468)
|+++..++++++++|||+..... +..+|++..+++++|||++||......+++..+++++++.+.++
T Consensus 221 l~~~~~~~~~~~~~vGp~~~~~~-------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~ 287 (424)
T 2iya_A 221 FQIKGDTVGDNYTFVGPTYGDRS-------------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHV 287 (424)
T ss_dssp TSTTGGGCCTTEEECCCCCCCCG-------------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEE
T ss_pred hCCCccCCCCCEEEeCCCCCCcc-------------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEE
Confidence 99875667889999999764321 01245655556789999999987666788999999999888888
Q ss_pred EEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhH
Q 012212 307 LWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNR 386 (468)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na 386 (468)
+|.++.... .+.+ +..++|+++.+|+||.++|.|+++ ||||||+||+.||+++|||+|++|...||+.||
T Consensus 288 ~~~~g~~~~-------~~~~-~~~~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na 357 (424)
T 2iya_A 288 VLSVGRFVD-------PADL-GEVPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357 (424)
T ss_dssp EEECCTTSC-------GGGG-CSCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHH
T ss_pred EEEECCcCC-------hHHh-ccCCCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHH
Confidence 888775411 1111 123678999999999999987765 999999999999999999999999999999999
Q ss_pred HHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 387 NYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 387 ~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
+++++ +|+|+.++.++ ++.++|.++|+++|+|++||++++++++++++ .+++.+.++.+.+
T Consensus 358 ~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~ 418 (424)
T 2iya_A 358 ERIVE-LGLGRHIPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQEIRE----AGGARAAADILEG 418 (424)
T ss_dssp HHHHH-TTSEEECCGGG---CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT----SCHHHHHHHHHHH
T ss_pred HHHHH-CCCEEEcCcCC---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence 99999 59999998776 89999999999999999999999999999987 4444444444433
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=9.1e-45 Score=355.24 Aligned_cols=342 Identities=17% Similarity=0.211 Sum_probs=227.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA------ 76 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------ 76 (468)
+.|||||+++|+.||++|+++||++|++|||+|||++++.+.... . .++.+..+.........
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~-~----------~g~~~~~~~~~~~~~~~~~~~~~ 89 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVA-E----------AGLCAVDVSPGVNYAKLFVPDDT 89 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHH-T----------TTCEEEESSTTCCSHHHHSCCC-
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHH-h----------cCCeeEecCCchhHhhhcccccc
Confidence 569999999999999999999999999999999999998876643 3 45666666433221100
Q ss_pred --------CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHH
Q 012212 77 --------DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLAL 148 (468)
Q Consensus 77 --------~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 148 (468)
...........+.......+.++++.++. .+||+||+|.+..++..+|+.+|||++.+...+......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~ 165 (400)
T 4amg_A 90 DVTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARS----WRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPG 165 (400)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHH----HCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEECcchHHHHHHHHHcCCCceeecccccccccc
Confidence 11111222233333344445555555555 569999999999999999999999999876544322111
Q ss_pred HhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhh-----ccccEEEEcC
Q 012212 149 SLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAV-----KISNWIINNS 223 (468)
Q Consensus 149 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 223 (468)
.... .. ....+..+.. ......+...
T Consensus 166 ~~~~---~~----------------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (400)
T 4amg_A 166 LGAL---IR----------------------------------------------RAMSKDYERHGVTGEPTGSVRLTTT 196 (400)
T ss_dssp HHHH---HH----------------------------------------------HHTHHHHHHTTCCCCCSCEEEEECC
T ss_pred hhhH---HH----------------------------------------------HHHHHHHHHhCCCcccccchhhccc
Confidence 1000 00 0000000000 0111111111
Q ss_pred cccCCh--hhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCC--HHHHHHHHHHH
Q 012212 224 VYELDS--PACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLS--QQQFAELALGL 299 (468)
Q Consensus 224 ~~~le~--~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~--~~~~~~~~~a~ 299 (468)
.+.+.. +.....+..+..++.... ....+.+|++..+++++|||++||..... .+.+..+++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l 264 (400)
T 4amg_A 197 PPSVEALLPEDRRSPGAWPMRYVPYN------------GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEV 264 (400)
T ss_dssp CHHHHHTSCGGGCCTTCEECCCCCCC------------CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHG
T ss_pred CchhhccCcccccCCcccCccccccc------------ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHh
Confidence 111110 101111222222222111 22333467888888899999999984433 35788899999
Q ss_pred HhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc
Q 012212 300 ESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF 379 (468)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~ 379 (468)
.+.+.+++|..++. ..... . ..++|+++.+|+||.++|.|+++ ||||||+||+.||+++|||+|++|+.
T Consensus 265 ~~~~~~~v~~~~~~----~~~~~-~----~~~~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~ 333 (400)
T 4amg_A 265 ADVDAEFVLTLGGG----DLALL-G----ELPANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHG 333 (400)
T ss_dssp GGSSSEEEEECCTT----CCCCC-C----CCCTTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC-
T ss_pred hccCceEEEEecCc----ccccc-c----cCCCCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCc
Confidence 99999999988765 11111 1 23788899999999999977655 99999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 380 SDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 380 ~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
.||+.||+++++ +|+|+.++..+ .+++ +|+++|+|++||+||+++++++++.
T Consensus 334 ~dQ~~na~~v~~-~G~g~~l~~~~---~~~~----al~~lL~d~~~r~~a~~l~~~~~~~ 385 (400)
T 4amg_A 334 SYQDTNRDVLTG-LGIGFDAEAGS---LGAE----QCRRLLDDAGLREAALRVRQEMSEM 385 (400)
T ss_dssp --CHHHHHHHHH-HTSEEECCTTT---CSHH----HHHHHHHCHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHH-CCCEEEcCCCC---chHH----HHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 999999999999 59999998766 6654 7788999999999999999999883
No 8
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=7.1e-43 Score=343.47 Aligned_cols=377 Identities=14% Similarity=0.164 Sum_probs=269.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC----CC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA----DR 78 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~ 78 (468)
+||||+|++.++.||++|+++||++|.++||+|+|++++.+.+.+.+ .++.+..++........ ..
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~----------~G~~~~~~~~~~~~~~~~~~~~~ 88 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRA----------AGATVVPYQSEIIDADAAEVFGS 88 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH----------TTCEEEECCCSTTTCCHHHHHHS
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHh----------cCCEEEeccccccccccchhhcc
Confidence 58999999999999999999999999999999999999998888887 56888888754432210 01
Q ss_pred CCHHHHHHH-HHHHhhHHHHHHHHHHhhCCCCCCceEEEec-CCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 79 EDPLKLGES-VARAMRGCLRDLIEKINQSNDCEPIRCVIAD-VTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
.+....+.. +.......++.+.+.+++ .+||+||+| ....++..+|+.+|||++.+.+.......... .+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~-~~~~~ 163 (415)
T 3rsc_A 89 DDLGVRPHLMYLRENVSVLRATAEALDG----DVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSF-SQDMV 163 (415)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHSS----SCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCH-HHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccc-ccccc
Confidence 111122222 334444445556655554 679999999 77778999999999999998754321100000 00000
Q ss_pred hcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhh----------ccc-cEEEEcCcc
Q 012212 157 EAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAV----------KIS-NWIINNSVY 225 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~l~~~~~ 225 (468)
.... ...+.........+.+..... ... +..+....+
T Consensus 164 ~~~~--------------------------------~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 211 (415)
T 3rsc_A 164 TLAG--------------------------------TIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPK 211 (415)
T ss_dssp HHHT--------------------------------CCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCT
T ss_pred cccc--------------------------------cCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCc
Confidence 0000 000000001111111111111 122 888889999
Q ss_pred cCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCC
Q 012212 226 ELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKP 305 (468)
Q Consensus 226 ~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 305 (468)
.++++...++.++.++||....... ..+|....+++++||+++||......+.+..+++++.+.+.+
T Consensus 212 ~~~~~~~~~~~~~~~vGp~~~~~~~-------------~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~ 278 (415)
T 3rsc_A 212 AFQIAGDTFDDRFVFVGPCFDDRRF-------------LGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWH 278 (415)
T ss_dssp TTSTTGGGCCTTEEECCCCCCCCGG-------------GCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCE
T ss_pred ccCCCcccCCCceEEeCCCCCCccc-------------CcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcE
Confidence 9988755667789999997654221 123444445667999999998766778899999999988888
Q ss_pred EEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhh
Q 012212 306 FLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQN 385 (468)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~n 385 (468)
+++.++.... .+. .+..++|+++.+|+|+.++|.++++ ||||||+||+.||+++|+|+|++|...||+.|
T Consensus 279 ~v~~~g~~~~-------~~~-l~~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~ 348 (415)
T 3rsc_A 279 VVMTLGGQVD-------PAA-LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPM 348 (415)
T ss_dssp EEEECTTTSC-------GGG-GCCCCTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHH
T ss_pred EEEEeCCCCC-------hHH-hcCCCCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHH
Confidence 8888775411 111 1123678999999999999977655 99999999999999999999999999999999
Q ss_pred HHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 386 RNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 386 a~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
|.++++. |+|+.++.++ ++.++|.++|+++|+|++++++++++++++.+ .+++.+.++.+.+.+
T Consensus 349 a~~l~~~-g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 349 ARRVDQL-GLGAVLPGEK---ADGDTLLAAVGAVAADPALLARVEAMRGHVRR----AGGAARAADAVEAYL 412 (415)
T ss_dssp HHHHHHH-TCEEECCGGG---CCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCEEEcccCC---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHh
Confidence 9999995 9999998877 89999999999999999999999999999988 555555555554444
No 9
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.7e-43 Score=346.08 Aligned_cols=367 Identities=14% Similarity=0.144 Sum_probs=248.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC-CCCHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD-REDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~ 83 (468)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+.+ .+++|+.++......... ......
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~----------~g~~~~~i~~~~~~~~~~~~~~~~~ 70 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAE----------VGVPHVPVGPSARAPIQRAKPLTAE 70 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH----------TTCCEEECCC-------CCSCCCHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHH----------cCCeeeeCCCCHHHHhhcccccchH
Confidence 699999999999999999999999999999999999998777776 568888887653211001 111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecC-Cccc--HHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADV-TVGS--ALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
. +...+......+++.+.... .+||+||+|. +..+ +..+|+.+|||++.+.+.+..... ..
T Consensus 71 ~---~~~~~~~~~~~~~~~l~~~~--~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~-----------~~ 134 (415)
T 1iir_A 71 D---VRRFTTEAIATQFDEIPAAA--EGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPS-----------PY 134 (415)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHT--TTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCC-----------SS
T ss_pred H---HHHHHHHHHHHHHHHHHHHh--cCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCC-----------cc
Confidence 1 11222222344444443211 6799999998 5668 899999999999998876542100 00
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhh------------ccccEEEEcCcccCC
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAV------------KISNWIINNSVYELD 228 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~le 228 (468)
.+... .. . ..++ ....+.+.+.+ ........+........+.. ... .+++++++.|+
T Consensus 135 ~p~~~-----~~-~-~~~~--~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~ 203 (415)
T 1iir_A 135 YPPPP-----LG-E-PSTQ--DTIDIPAQWER-NNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVLA 203 (415)
T ss_dssp SCCCC------------------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTTS
T ss_pred cCCcc-----CC-c-cccc--hHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhhc
Confidence 00000 00 0 0000 00000000000 00000000000011111111 122 68999999998
Q ss_pred h-hhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 012212 229 S-PACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFL 307 (468)
Q Consensus 229 ~-~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l 307 (468)
+ +...+ ++++|||+..+.. +..+.++.+|++.. +++|||++||.. ...+.++.+++++++.+.+++
T Consensus 204 ~~~~~~~--~~~~vG~~~~~~~--------~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v 270 (415)
T 1iir_A 204 PLQPTDL--DAVQTGAWILPDE--------RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVI 270 (415)
T ss_dssp CCCCCSS--CCEECCCCCCCCC--------CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccC--CeEeeCCCccCcc--------cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEE
Confidence 7 52333 8999999886532 23567788999764 368999999986 578888999999999999999
Q ss_pred EEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHH
Q 012212 308 WVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRN 387 (468)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 387 (468)
|+++.. ... . . ..++|+++.+|+||.++| +++++||||||+||+.||+++|||+|++|...||..||+
T Consensus 271 ~~~g~~----~~~-~-~----~~~~~v~~~~~~~~~~~l--~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~ 338 (415)
T 1iir_A 271 LSRGWA----DLV-L-P----DDGADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAG 338 (415)
T ss_dssp ECTTCT----TCC-C-S----SCGGGEEECSSCCHHHHG--GGSSEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHH
T ss_pred EEeCCC----ccc-c-c----CCCCCEEEeCcCChHHHH--hhCCEEEeCCChhHHHHHHHcCCCEEECCCCCccHHHHH
Confidence 987754 111 1 1 125688999999999999 556669999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 388 YICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 388 rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
++++ +|+|+.++.++ ++.++|.++|+++ +|++||+++++++++++.
T Consensus 339 ~l~~-~g~g~~~~~~~---~~~~~l~~~i~~l-~~~~~~~~~~~~~~~~~~ 384 (415)
T 1iir_A 339 RVAE-LGVGVAHDGPI---PTFDSLSAALATA-LTPETHARATAVAGTIRT 384 (415)
T ss_dssp HHHH-HTSEEECSSSS---CCHHHHHHHHHHH-TSHHHHHHHHHHHHHSCS
T ss_pred HHHH-CCCcccCCcCC---CCHHHHHHHHHHH-cCHHHHHHHHHHHHHHhh
Confidence 9999 59999998776 8999999999999 999999999999998854
No 10
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=6e-42 Score=335.42 Aligned_cols=378 Identities=17% Similarity=0.208 Sum_probs=269.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc----CCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA----ADR 78 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~ 78 (468)
.|+||+|++.++.||++|++.||++|+++||+|+|++++.+.+.+.. .++.+..++....... ...
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~----------~G~~~~~~~~~~~~~~~~~~~~~ 72 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKA----------AGAEVVLYKSEFDTFHVPEVVKQ 72 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----------TTCEEEECCCGGGTSSSSSSSCC
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHH----------cCCEEEecccccccccccccccc
Confidence 46799999999999999999999999999999999999888888877 5688888875332211 022
Q ss_pred CCHHHHHHH-HHHHhhHHHHHHHHHHhhCCCCCCceEEEec-CCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 79 EDPLKLGES-VARAMRGCLRDLIEKINQSNDCEPIRCVIAD-VTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
.+....+.. +.......+..+.+.+++ .+||+||+| ....++..+|+.+|||++.+.+.......... .+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~-~~~~~ 147 (402)
T 3ia7_A 73 EDAETQLHLVYVRENVAILRAAEEALGD----NPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSL-FKELW 147 (402)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCH-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccc-ccccc
Confidence 334444444 444444555666666654 679999999 77778999999999999998654331100000 00000
Q ss_pred hcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh----------hccc-cEEEEcCcc
Q 012212 157 EAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA----------VKIS-NWIINNSVY 225 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~~~ 225 (468)
..... ..| .........+.+.... .... +..+....+
T Consensus 148 ~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 195 (402)
T 3ia7_A 148 KSNGQ--------------RHP------------------ADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPK 195 (402)
T ss_dssp HHHTC--------------CCG------------------GGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCG
T ss_pred ccccc--------------cCh------------------hhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCh
Confidence 00000 000 0000011111111111 1122 778888888
Q ss_pred cCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCC
Q 012212 226 ELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKP 305 (468)
Q Consensus 226 ~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 305 (468)
+++++...++.++.++||........ .+|....+++++||+++||......+.+..+++++.+.+.+
T Consensus 196 ~~~~~~~~~~~~~~~vGp~~~~~~~~-------------~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~ 262 (402)
T 3ia7_A 196 SFQPFAETFDERFAFVGPTLTGRDGQ-------------PGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWH 262 (402)
T ss_dssp GGSTTGGGCCTTEEECCCCCCC-----------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCE
T ss_pred HhCCccccCCCCeEEeCCCCCCcccC-------------CCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcE
Confidence 88877555677899999976543211 13443345667999999999766778899999999988888
Q ss_pred EEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc-ccchhh
Q 012212 306 FLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY-FSDQYQ 384 (468)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~-~~DQ~~ 384 (468)
+++.++... ..+. .+..++|+++.+|+|+.++|.++++ +|||||+||+.|++++|+|+|++|. ..||..
T Consensus 263 ~~~~~g~~~-------~~~~-~~~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~ 332 (402)
T 3ia7_A 263 VVMAIGGFL-------DPAV-LGPLPPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAP 332 (402)
T ss_dssp EEEECCTTS-------CGGG-GCSCCTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHH
T ss_pred EEEEeCCcC-------Chhh-hCCCCCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHH
Confidence 888777541 1111 1224688999999999999977655 9999999999999999999999999 999999
Q ss_pred hHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 385 NRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 385 na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
||.++++. |+|+.++.++ ++++.|.++|+++|+|++++++++++++++.+ .+++.+.++.+.+.+.
T Consensus 333 ~a~~~~~~-g~g~~~~~~~---~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 333 SAERVIEL-GLGSVLRPDQ---LEPASIREAVERLAADSAVRERVRRMQRDILS----SGGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHT-TSEEECCGGG---CSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEccCCC---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh----CChHHHHHHHHHHHHh
Confidence 99999995 9999998877 89999999999999999999999999999877 5555555555555443
No 11
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.6e-43 Score=346.34 Aligned_cols=374 Identities=13% Similarity=0.084 Sum_probs=258.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC--CCCHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD--REDPL 82 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~ 82 (468)
|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+.+. +++|+.++......... .....
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 70 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEV----------GVPHVPVGLPQHMMLQEGMPPPPP 70 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH----------TCCEEECSCCGGGCCCTTSCCCCH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc----------CCeeeecCCCHHHHHhhccccchh
Confidence 6999999999999999999999999999999999999888877774 47788877543211100 11111
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecC-Cccc--HHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcC
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADV-TVGS--ALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAG 159 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 159 (468)
..+ ...+......+++.+.... .+||+||+|. +..+ +..+|+.+|||++.+.+.+..... .++|
T Consensus 71 ~~~---~~~~~~~~~~~~~~l~~~~--~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~p------ 137 (416)
T 1rrv_A 71 EEE---QRLAAMTVEMQFDAVPGAA--EGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--PHLP------ 137 (416)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHT--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSC------
T ss_pred HHH---HHHHHHHHHHHHHHHHHHh--cCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--cccC------
Confidence 111 1122222344444444222 5799999997 4556 888999999999988766532100 0000
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChh--------HHHHHHHHHHHHHh------------hccccEE
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSE--------QKILLGIICAVIQA------------VKISNWI 219 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~~~ 219 (468)
+ ..+ ++ ..+....+... ...+........+. .... .+
T Consensus 138 -------~--------~~~-~~------~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ 194 (416)
T 1rrv_A 138 -------P--------AYD-EP------TTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RP 194 (416)
T ss_dssp -------C--------CBC-SC------CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SC
T ss_pred -------C--------CCC-CC------CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-Ce
Confidence 0 000 00 00000000000 00000011111111 1123 68
Q ss_pred EEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHH
Q 012212 220 INNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALG 298 (468)
Q Consensus 220 l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a 298 (468)
+++++++|+++...+ +++++||+..+.. +..+.++.+|++.. +++|||++||... ...+.+..++++
T Consensus 195 l~~~~~~l~~~~~~~--~~~~vG~~~~~~~--------~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a 262 (416)
T 1rrv_A 195 LLAADPVLAPLQPDV--DAVQTGAWLLSDE--------RPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEA 262 (416)
T ss_dssp EECSCTTTSCCCSSC--CCEECCCCCCCCC--------CCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHH
T ss_pred EEccCccccCCCCCC--CeeeECCCccCcc--------CCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHH
Confidence 999999998763333 8999999887532 23567788999764 3689999999843 456778899999
Q ss_pred HHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc
Q 012212 299 LESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY 378 (468)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~ 378 (468)
+.+.+.+++|+++.. ... . +..++|+++.+|+||.++| +++++||||||+||++||+++|||+|++|+
T Consensus 263 l~~~~~~~v~~~g~~----~~~-~-----~~~~~~v~~~~~~~~~~ll--~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~ 330 (416)
T 1rrv_A 263 IRAQGRRVILSRGWT----ELV-L-----PDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPR 330 (416)
T ss_dssp HHHTTCCEEEECTTT----TCC-C-----SCCCTTEEEESSCCHHHHG--GGSSEEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHCCCeEEEEeCCc----ccc-c-----cCCCCCEEEeccCChHHHh--ccCCEEEecCChhHHHHHHHcCCCEEEccC
Confidence 999999999988765 111 1 1236788999999999999 555669999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 379 FSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 379 ~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
..||..||+++++ +|+|+.++.++ .+.++|.++|+++ +|++||++++++++++++ .++. +.++.+++.+.
T Consensus 331 ~~dQ~~na~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~l-~~~~~~~~~~~~~~~~~~----~~~~-~~~~~i~e~~~ 400 (416)
T 1rrv_A 331 NTDQPYFAGRVAA-LGIGVAHDGPT---PTFESLSAALTTV-LAPETRARAEAVAGMVLT----DGAA-AAADLVLAAVG 400 (416)
T ss_dssp SBTHHHHHHHHHH-HTSEEECSSSC---CCHHHHHHHHHHH-TSHHHHHHHHHHTTTCCC----CHHH-HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH-CCCccCCCCCC---CCHHHHHHHHHHh-hCHHHHHHHHHHHHHHhh----cCcH-HHHHHHHHHHh
Confidence 9999999999999 49999998766 8999999999999 999999999999988865 3444 44444425443
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.3e-41 Score=332.47 Aligned_cols=352 Identities=15% Similarity=0.135 Sum_probs=249.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC-CCCCHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA-DREDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~ 83 (468)
|||+|++.++.||++|+++||++|.++||+|+|++++.+.+.+.+ .++.|..++........ .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~----------~g~~~~~l~~~~~~~~~~~~~~~~~ 70 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAE----------VGVPMVPVGRAVRAGAREPGELPPG 70 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHH----------TTCCEEECSSCSSGGGSCTTCCCTT
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHH----------cCCceeecCCCHHHHhccccCCHHH
Confidence 689999999999999999999999999999999999999988888 55788888754332110 0111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccH---HHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcCC
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSA---LEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAGI 160 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (468)
+...+.......++++.+.+ .+||+||+|.....+ ..+|+.+|||++.+...+......... ....
T Consensus 71 ~~~~~~~~~~~~~~~l~~~~------~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~--~~~~--- 139 (404)
T 3h4t_A 71 AAEVVTEVVAEWFDKVPAAI------EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQ--AERD--- 139 (404)
T ss_dssp CGGGHHHHHHHHHHHHHHHH------TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCH--HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHH--HHHH---
Confidence 12222333333344443333 349999999765534 789999999999888766421000000 0000
Q ss_pred CCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhh-----------ccccEEEEcCcccCCh
Q 012212 161 IDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAV-----------KISNWIINNSVYELDS 229 (468)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~le~ 229 (468)
. .+...+..+.....+....+ ...+..+.+.++.+.+
T Consensus 140 ------------------------~--------~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p 187 (404)
T 3h4t_A 140 ------------------------M--------YNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSP 187 (404)
T ss_dssp ------------------------H--------HHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSC
T ss_pred ------------------------H--------HHHHHHHHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeC
Confidence 0 00000000000000000000 0123456678888865
Q ss_pred hhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012212 230 PACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWV 309 (468)
Q Consensus 230 ~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~ 309 (468)
. .++.+++.++|++..+... ..++++.+|++. ++++|||++||... ..+.+..+++++.+.+.+++|+
T Consensus 188 ~-~~~~~~~~~~G~~~~~~~~--------~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~ 255 (404)
T 3h4t_A 188 L-RPTDLGTVQTGAWILPDQR--------PLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLS 255 (404)
T ss_dssp C-CTTCCSCCBCCCCCCCCCC--------CCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEE
T ss_pred C-CCCCCCeEEeCccccCCCC--------CCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEE
Confidence 5 5677899999987665322 367778889874 34689999999866 7788999999999999999998
Q ss_pred EcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHH
Q 012212 310 IRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYI 389 (468)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv 389 (468)
++.. ..... ..++|+++.+|+||.++|.+ +++||||||+||+.|++++|||+|++|+..||+.||.++
T Consensus 256 ~g~~----~~~~~------~~~~~v~~~~~~~~~~ll~~--~d~~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~ 323 (404)
T 3h4t_A 256 SGWA----GLGRI------DEGDDCLVVGEVNHQVLFGR--VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRV 323 (404)
T ss_dssp CTTT----TCCCS------SCCTTEEEESSCCHHHHGGG--SSEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH
T ss_pred eCCc----ccccc------cCCCCEEEecCCCHHHHHhh--CcEEEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHH
Confidence 8754 11111 12688999999999999965 455999999999999999999999999999999999999
Q ss_pred HHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 390 CEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 390 ~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
++. |+|+.++..+ ++.++|.++|+++|+ ++|+++++++++.+.+
T Consensus 324 ~~~-G~g~~l~~~~---~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~ 367 (404)
T 3h4t_A 324 ADL-GVGVAHDGPT---PTVESLSAALATALT-PGIRARAAAVAGTIRT 367 (404)
T ss_dssp HHH-TSEEECSSSS---CCHHHHHHHHHHHTS-HHHHHHHHHHHTTCCC
T ss_pred HHC-CCEeccCcCC---CCHHHHHHHHHHHhC-HHHHHHHHHHHHHHhh
Confidence 995 9999998777 899999999999999 9999999999987743
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=3.2e-40 Score=326.07 Aligned_cols=376 Identities=16% Similarity=0.221 Sum_probs=257.3
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCC----
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAAD---- 77 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 77 (468)
++||||+|++.++.||++|++.||++|+++||+|++++++...+.+.+ .+++++.++...+.....
T Consensus 5 m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~ 74 (430)
T 2iyf_A 5 TTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA----------TGPRPVLYHSTLPGPDADPEAW 74 (430)
T ss_dssp ---CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHT----------TSCEEEECCCCSCCTTSCGGGG
T ss_pred cccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHh----------CCCEEEEcCCcCcccccccccc
Confidence 346899999999999999999999999999999999999987766655 568888888653322100
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhh
Q 012212 78 REDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLE 157 (468)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 157 (468)
..+....+..+.......+..+.+.+++ .+||+||+|....++..+|+.+|||++.+.+.+.........+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 150 (430)
T 2iyf_A 75 GSTLLDNVEPFLNDAIQALPQLADAYAD----DIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMW 150 (430)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHTT----SCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchh
Confidence 1233333333333334445555555554 579999999877788999999999999988654310000000000000
Q ss_pred cCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHH----------hhccccEEEEcCcccC
Q 012212 158 AGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQ----------AVKISNWIINNSVYEL 227 (468)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~l 227 (468)
+ . ....+ ....+.....+... ....++.+++++.+.+
T Consensus 151 ----~------~----~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 197 (430)
T 2iyf_A 151 ----R------E----PRQTE-------------------RGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKAL 197 (430)
T ss_dssp ----H------H----HHHSH-------------------HHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGG
T ss_pred ----h------h----hccch-------------------HHHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHh
Confidence 0 0 00000 00000011111111 1125688999999999
Q ss_pred ChhhhccCCC-ceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC-CCC
Q 012212 228 DSPACDLIPN-ILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL-QKP 305 (468)
Q Consensus 228 e~~~~~~~p~-v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~ 305 (468)
+++..++.++ ++++||....... ..+|....+++++||+++||......+.+..+++++.+. +.+
T Consensus 198 ~~~~~~~~~~~v~~vG~~~~~~~~-------------~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~ 264 (430)
T 2iyf_A 198 QPHADRVDEDVYTFVGACQGDRAE-------------EGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWH 264 (430)
T ss_dssp STTGGGSCTTTEEECCCCC------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEE
T ss_pred CCCcccCCCccEEEeCCcCCCCCC-------------CCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeE
Confidence 8764556678 9999986543210 012333334567999999998755678888999999886 777
Q ss_pred EEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhh
Q 012212 306 FLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQN 385 (468)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~n 385 (468)
++|.++.+. ..+.+ +..++|+++.+|+||.++|.++++ ||||||+||+.||+++|+|+|++|...||..|
T Consensus 265 ~~~~~G~~~-------~~~~l-~~~~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~ 334 (430)
T 2iyf_A 265 LVLQIGRKV-------TPAEL-GELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334 (430)
T ss_dssp EEEECC----------CGGGG-CSCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHH
T ss_pred EEEEeCCCC-------ChHHh-ccCCCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHH
Confidence 878776541 11111 123678999999999999977765 99999999999999999999999999999999
Q ss_pred HHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 386 RNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 386 a~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
|.++++. |+|+.++..+ ++.++|.++|.++|+|+++++++.++++++.+. ++..+.++.+.+
T Consensus 335 a~~~~~~-g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~ 396 (430)
T 2iyf_A 335 ADMLQGL-GVARKLATEE---ATADLLRETALALVDDPEVARRLRRIQAEMAQE----GGTRRAADLIEA 396 (430)
T ss_dssp HHHHHHT-TSEEECCCC----CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHT
T ss_pred HHHHHHc-CCEEEcCCCC---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc----CcHHHHHHHHHH
Confidence 9999995 9999998766 899999999999999999999999999998873 344444444443
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=6.7e-41 Score=331.63 Aligned_cols=373 Identities=15% Similarity=0.135 Sum_probs=247.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc-------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA------- 75 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~------- 75 (468)
.||||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+.. .++.|+.++...+...
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~----------~G~~~~~i~~~~~~~~~~~~~~~ 88 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITA----------AGLTAVPVGTDVDLVDFMTHAGH 88 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHT----------TTCCEEECSCCCCHHHHHHHTTH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHh----------CCCceeecCCccchHHHhhhhhc
Confidence 46899999999999999999999999999999999999988777776 5688888876531000
Q ss_pred --------CC-----CC--CHHHH---HHHHHHHhh-----H-HHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHh
Q 012212 76 --------AD-----RE--DPLKL---GESVARAMR-----G-CLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESM 131 (468)
Q Consensus 76 --------~~-----~~--~~~~~---~~~~~~~~~-----~-~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l 131 (468)
.. .. ....+ ...+...+. . .++++++.+++ .+||+||+|....++..+|+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~pDlVv~d~~~~~~~~aA~~l 164 (441)
T 2yjn_A 89 DIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRK----WRPDLVIWEPLTFAAPIAAAVT 164 (441)
T ss_dssp HHHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHH----HCCSEEEECTTCTHHHHHHHHH
T ss_pred ccccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHh----cCCCEEEecCcchhHHHHHHHc
Confidence 00 10 11111 111211111 2 45666665554 5699999999878899999999
Q ss_pred CCceEEEcccchHHHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHH
Q 012212 132 GIARAAVVPFGPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQ 211 (468)
Q Consensus 132 giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (468)
|||++.+...+.........++.... .. +.. ... . .....+....+
T Consensus 165 giP~v~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~-----------~~~-~----~~~~~l~~~~~ 210 (441)
T 2yjn_A 165 GTPHARLLWGPDITTRARQNFLGLLP--DQ----------------PEE-----------HRE-D----PLAEWLTWTLE 210 (441)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHGG--GS----------------CTT-----------TCC-C----HHHHHHHHHHH
T ss_pred CCCEEEEecCCCcchhhhhhhhhhcc--cc----------------ccc-----------ccc-c----hHHHHHHHHHH
Confidence 99999986544322111100000000 00 000 000 0 01111111122
Q ss_pred hhc---------cccEEEEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEec
Q 012212 212 AVK---------ISNWIINNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFG 282 (468)
Q Consensus 212 ~~~---------~~~~~l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~G 282 (468)
.+. .++..+..+.+.++++ .+++. ..+++.... .+.++.+|++..+++++|||++|
T Consensus 211 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~------------~~~~~~~~l~~~~~~~~v~v~~G 275 (441)
T 2yjn_A 211 KYGGPAFDEEVVVGQWTIDPAPAAIRLD-TGLKT--VGMRYVDYN------------GPSVVPEWLHDEPERRRVCLTLG 275 (441)
T ss_dssp HTTCCCCCGGGTSCSSEEECSCGGGSCC-CCCCE--EECCCCCCC------------SSCCCCGGGSSCCSSCEEEEEC-
T ss_pred HcCCCCCCccccCCCeEEEecCccccCC-CCCCC--CceeeeCCC------------CCcccchHhhcCCCCCEEEEECC
Confidence 111 2455666666666643 22221 112221111 12335578876666789999999
Q ss_pred ccccC---CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccC
Q 012212 283 SVAVL---SQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCG 359 (468)
Q Consensus 283 s~~~~---~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG 359 (468)
|.... ..+.+..+++++.+.+.+++|++++. ....+. ..++|+++.+|+||.++|. .+++||||||
T Consensus 276 s~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~----~~~~l~-----~~~~~v~~~~~~~~~~ll~--~ad~~V~~~G 344 (441)
T 2yjn_A 276 ISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQ----QLEGVA-----NIPDNVRTVGFVPMHALLP--TCAATVHHGG 344 (441)
T ss_dssp ---------CCSTTTTHHHHHTSSSEEEECCCTT----TTSSCS-----SCCSSEEECCSCCHHHHGG--GCSEEEECCC
T ss_pred CCcccccChHHHHHHHHHHHHcCCCEEEEEECCc----chhhhc-----cCCCCEEEecCCCHHHHHh--hCCEEEECCC
Confidence 98543 34567788899988888998887754 112221 1367899999999999994 5566999999
Q ss_pred chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 360 WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 360 ~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
+||+.||+++|||+|++|+..||..||.++++. |+|+.++.++ ++.++|.++|+++|+|++|+++++++++++.+
T Consensus 345 ~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~- 419 (441)
T 2yjn_A 345 PGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEF-GAGIALPVPE---LTPDQLRESVKRVLDDPAHRAGAARMRDDMLA- 419 (441)
T ss_dssp HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEECCTTT---CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHc-CCEEEccccc---CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999995 9999998877 89999999999999999999999999999987
Q ss_pred hcCCCchHHHHHHHHHHH
Q 012212 440 LLGGGSSFRNFESFISDI 457 (468)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~ 457 (468)
.++..+.++.+.+.+
T Consensus 420 ---~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 420 ---EPSPAEVVGICEELA 434 (441)
T ss_dssp ---SCCHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHH
Confidence 455544444444433
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=2.6e-39 Score=314.67 Aligned_cols=352 Identities=15% Similarity=0.111 Sum_probs=250.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCC-CC-------c-
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLE-LQ-------A- 75 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~-~~-------~- 75 (468)
|||++++.++.||++|+++||++|+++||+|+|++++...+.+.. .++.+..++.... .. .
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~ 70 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTG----------VGLPAVATTDLPIRHFITTDREGRP 70 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH----------TTCCEEESCSSCHHHHHHBCTTSCB
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHh----------CCCEEEEeCCcchHHHHhhhcccCc
Confidence 689999999999999999999999999999999999887776666 4577887775430 00 0
Q ss_pred CCC-CC--HHHHH-HH-HHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHHHHh
Q 012212 76 ADR-ED--PLKLG-ES-VARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLALSL 150 (468)
Q Consensus 76 ~~~-~~--~~~~~-~~-~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 150 (468)
... .. ....+ .. +.......+.++.+.+++ .+||+||+|.+..++..+|+.+|||++.+...+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~----- 141 (384)
T 2p6p_A 71 EAIPSDPVAQARFTGRWFARMAASSLPRMLDFSRA----WRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDA----- 141 (384)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCC-----
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHhc----cCCcEEEECcchhhHHHHHHhcCCCEEEeccCCccc-----
Confidence 000 11 11111 21 222233345555555554 469999999887788899999999999876322100
Q ss_pred hhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhc-----cccEEEEcCcc
Q 012212 151 QFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVK-----ISNWIINNSVY 225 (468)
Q Consensus 151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~ 225 (468)
.++ .........+...... .++.++.++.+
T Consensus 142 ---------------------------~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (384)
T 2p6p_A 142 ---------------------------DGI------------------HPGADAELRPELSELGLERLPAPDLFIDICPP 176 (384)
T ss_dssp ---------------------------TTT------------------HHHHHHHTHHHHHHTTCSSCCCCSEEEECSCG
T ss_pred ---------------------------chh------------------hHHHHHHHHHHHHHcCCCCCCCCCeEEEECCH
Confidence 000 0001111111111111 16789999999
Q ss_pred cCChhhhccC-CCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccC-----CHHHHHHHHHHH
Q 012212 226 ELDSPACDLI-PNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVL-----SQQQFAELALGL 299 (468)
Q Consensus 226 ~le~~~~~~~-p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~-----~~~~~~~~~~a~ 299 (468)
.++.+ .+++ +++.+++. . .+.++.+|++..+++++||+++||.... +.+.+..+++++
T Consensus 177 ~~~~~-~~~~~~~~~~~~~---~------------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al 240 (384)
T 2p6p_A 177 SLRPA-NAAPARMMRHVAT---S------------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDL 240 (384)
T ss_dssp GGSCT-TSCCCEECCCCCC---C------------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHH
T ss_pred HHCCC-CCCCCCceEecCC---C------------CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHH
Confidence 88865 3333 23444421 1 1223557887655667999999998653 457788999999
Q ss_pred HhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc
Q 012212 300 ESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF 379 (468)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~ 379 (468)
.+.+.+++|++++. . .+.+ +..++|+++ +|+||.++|+++ ++||||||+||+.||+++|+|+|++|..
T Consensus 241 ~~~~~~~~~~~g~~----~----~~~l-~~~~~~v~~-~~~~~~~~l~~~--d~~v~~~G~~t~~Ea~~~G~P~v~~p~~ 308 (384)
T 2p6p_A 241 VRWDVELIVAAPDT----V----AEAL-RAEVPQARV-GWTPLDVVAPTC--DLLVHHAGGVSTLTGLSAGVPQLLIPKG 308 (384)
T ss_dssp HTTTCEEEEECCHH----H----HHHH-HHHCTTSEE-ECCCHHHHGGGC--SEEEECSCTTHHHHHHHTTCCEEECCCS
T ss_pred hcCCcEEEEEeCCC----C----HHhh-CCCCCceEE-cCCCHHHHHhhC--CEEEeCCcHHHHHHHHHhCCCEEEccCc
Confidence 98888998887632 1 1111 235789999 999999999554 5599999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 012212 380 SDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISD 456 (468)
Q Consensus 380 ~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (468)
.||..||.++++. |+|+.++..+ .+.++|.++|+++|+|++||++++++++++++ .++..+.++.+.+.
T Consensus 309 ~dq~~~a~~~~~~-g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~ 377 (384)
T 2p6p_A 309 SVLEAPARRVADY-GAAIALLPGE---DSTEAIADSCQELQAKDTYARRAQDLSREISG----MPLPATVVTALEQL 377 (384)
T ss_dssp HHHHHHHHHHHHH-TSEEECCTTC---CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT----SCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHC-CCeEecCcCC---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 9999999999994 9999998766 89999999999999999999999999999988 45555555444433
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=4.1e-38 Score=307.66 Aligned_cols=343 Identities=13% Similarity=0.149 Sum_probs=225.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCC---------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLEL--------- 73 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~--------- 73 (468)
.+|||+|++.++.||++|++.||++|.++||+|++++++.+.+.+.. .++.+..++.....
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~----------~G~~~~~~~~~~~~~~~~~~~~~ 83 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTG----------AGLPFAPTCPSLDMPEVLSWDRE 83 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHH----------TTCCEEEEESSCCHHHHHSBCTT
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh----------CCCeeEecCCccchHhhhhhhcc
Confidence 36899999999999999999999999999999999999888888887 44666666531110
Q ss_pred Cc--CCCCCHH----HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHHHH
Q 012212 74 QA--ADREDPL----KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGSLA 147 (468)
Q Consensus 74 ~~--~~~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 147 (468)
.. ....+.. .....+.......++++.+.+++ .+||+|++|...+++..+|+.+|||++.+.........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~ 159 (398)
T 4fzr_A 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAER----WKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPEL 159 (398)
T ss_dssp SCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHH
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchh
Confidence 00 0011111 12222233333444455555554 56999999988888999999999999987654321110
Q ss_pred HHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh-----hccccEEEEc
Q 012212 148 LSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA-----VKISNWIINN 222 (468)
Q Consensus 148 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~ 222 (468)
.... ....+.+.... ....+..+..
T Consensus 160 ~~~~--------------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (398)
T 4fzr_A 160 IKSA--------------------------------------------------GVGELAPELAELGLTDFPDPLLSIDV 189 (398)
T ss_dssp HHHH--------------------------------------------------HHHHTHHHHHTTTCSSCCCCSEEEEC
T ss_pred hhHH--------------------------------------------------HHHHHHHHHHHcCCCCCCCCCeEEEe
Confidence 0000 00000011111 1123556666
Q ss_pred CcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccC--------CHHHHHH
Q 012212 223 SVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVL--------SQQQFAE 294 (468)
Q Consensus 223 ~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~--------~~~~~~~ 294 (468)
..+.+..+.......+.++++.. ...++.+|+...+++++||+++||.... ..+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~ 255 (398)
T 4fzr_A 190 CPPSMEAQPKPGTTKMRYVPYNG--------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQA 255 (398)
T ss_dssp SCGGGC----CCCEECCCCCCCC--------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHH
T ss_pred CChhhCCCCCCCCCCeeeeCCCC--------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHH
Confidence 66666544111111122222110 1223446777656678999999998432 3456888
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCcee
Q 012212 295 LALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFL 374 (468)
Q Consensus 295 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v 374 (468)
+++++.+.+.+++|+.++. .. +.+ +..++|+++.+|+|+.++|.++++ ||||||.||+.||+++|+|+|
T Consensus 256 ~~~al~~~~~~~v~~~~~~----~~----~~l-~~~~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v 324 (398)
T 4fzr_A 256 LSQELPKLGFEVVVAVSDK----LA----QTL-QPLPEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQV 324 (398)
T ss_dssp HHHHGGGGTCEEEECCCC-----------------CCTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCEEEEEeCCc----ch----hhh-ccCCCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEE
Confidence 9999998888888877654 11 111 234789999999999999977655 999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
++|...||..||.++++. |+|+.++..+ ++++.|.++|+++|+|+++|++++++++++.+
T Consensus 325 ~~p~~~~q~~~a~~~~~~-g~g~~~~~~~---~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~ 384 (398)
T 4fzr_A 325 SVPVIAEVWDSARLLHAA-GAGVEVPWEQ---AGVESVLAACARIRDDSSYVGNARRLAAEMAT 384 (398)
T ss_dssp ECCCSGGGHHHHHHHHHT-TSEEECC----------CHHHHHHHHHHCTHHHHHHHHHHHHHTT
T ss_pred ecCCchhHHHHHHHHHHc-CCEEecCccc---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHc
Confidence 999999999999999995 9999998877 89999999999999999999999999999877
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=4.4e-37 Score=300.31 Aligned_cols=346 Identities=15% Similarity=0.190 Sum_probs=236.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCc-------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQA------- 75 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~------- 75 (468)
++|||+|++.++.||++|+++||++|.++||+|+++++ .+.+.+.. .++.+..++.......
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~----------~G~~~~~~~~~~~~~~~~~~~~~ 87 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAA----------AGLEVVDVAPDYSAVKVFEQVAK 87 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHT----------TTCEEEESSTTCCHHHHHHHHHH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHh----------CCCeeEecCCccCHHHHhhhccc
Confidence 46899999999999999999999999999999999999 87777776 5688888875421000
Q ss_pred -----------CCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchH
Q 012212 76 -----------ADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
............+.......+.++.+.+++ ++||+||+|....++..+|+.+|||++.....+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~ 163 (398)
T 3oti_A 88 DNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDD----YRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWR 163 (398)
T ss_dssp HCHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHH----HCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCC
T ss_pred CCccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCC
Confidence 001112222222333333444555555554 56999999988888999999999999976532210
Q ss_pred HHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh----hccccEEE
Q 012212 145 SLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA----VKISNWII 220 (468)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l 220 (468)
.... .......+....+. ....+..+
T Consensus 164 ~~~~--------------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (398)
T 3oti_A 164 TRGM--------------------------------------------------HRSIASFLTDLMDKHQVSLPEPVATI 193 (398)
T ss_dssp CTTH--------------------------------------------------HHHHHTTCHHHHHHTTCCCCCCSEEE
T ss_pred ccch--------------------------------------------------hhHHHHHHHHHHHHcCCCCCCCCeEE
Confidence 0000 00000000001111 11235555
Q ss_pred EcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccC--CHHHHHHHHHH
Q 012212 221 NNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVL--SQQQFAELALG 298 (468)
Q Consensus 221 ~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~--~~~~~~~~~~a 298 (468)
....+.+..+.......+.++ |. . .+..+.+|+...+++++||+++||.... ..+.+..++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~--~------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~ 258 (398)
T 3oti_A 194 ESFPPSLLLEAEPEGWFMRWV-PY--G------------GGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAA 258 (398)
T ss_dssp CSSCGGGGTTSCCCSBCCCCC-CC--C------------CCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHH
T ss_pred EeCCHHHCCCCCCCCCCcccc-CC--C------------CCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHH
Confidence 555555544310111111111 10 0 1222335665555677999999998432 56778899999
Q ss_pred HHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCceecccc
Q 012212 299 LESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPY 378 (468)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~ 378 (468)
+.+.+.+++|+.++. .. +.+ +..++|+++.+|+|+.++|.++++ ||||||.||+.||+++|+|+|++|.
T Consensus 259 l~~~~~~~v~~~g~~----~~----~~l-~~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~ 327 (398)
T 3oti_A 259 AGEVDADFVLALGDL----DI----SPL-GTLPRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPD 327 (398)
T ss_dssp HHTSSSEEEEECTTS----CC----GGG-CSCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC
T ss_pred HHcCCCEEEEEECCc----Ch----hhh-ccCCCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCC
Confidence 998888988887754 11 111 123688999999999999977655 9999999999999999999999999
Q ss_pred ccchhhhH--HHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 012212 379 FSDQYQNR--NYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFE 451 (468)
Q Consensus 379 ~~DQ~~na--~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 451 (468)
..||..|| .++++. |+|+.++..+ .+++.|. ++|+|++||++++++++++.+ ..+..+.++
T Consensus 328 ~~dq~~~a~~~~~~~~-g~g~~~~~~~---~~~~~l~----~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 390 (398)
T 3oti_A 328 PRDQFQHTAREAVSRR-GIGLVSTSDK---VDADLLR----RLIGDESLRTAAREVREEMVA----LPTPAETVR 390 (398)
T ss_dssp TTCCSSCTTHHHHHHH-TSEEECCGGG---CCHHHHH----HHHHCHHHHHHHHHHHHHHHT----SCCHHHHHH
T ss_pred CchhHHHHHHHHHHHC-CCEEeeCCCC---CCHHHHH----HHHcCHHHHHHHHHHHHHHHh----CCCHHHHHH
Confidence 99999999 999995 9999998876 7888776 899999999999999999987 444444333
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=3.4e-36 Score=293.42 Aligned_cols=352 Identities=12% Similarity=0.150 Sum_probs=239.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEc-CCCCCCCcC------
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTI-PDGLELQAA------ 76 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~------ 76 (468)
+|||+|++.++.||++|+..||++|.++||+|++++++.+.+.+.. .++.+..+ .........
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~ 70 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHG----------AGLTTAGIRGNDRTGDTGGTTQLR 70 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHH----------BTCEEEEC--------------CC
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHh----------CCCceeeecCCccchhhhhhhccc
Confidence 4799999999999999999999999999999999999887777777 45666666 321100000
Q ss_pred ------CCCCHHHHHHHHHHHhhHH-------HHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccch
Q 012212 77 ------DREDPLKLGESVARAMRGC-------LRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGP 143 (468)
Q Consensus 77 ------~~~~~~~~~~~~~~~~~~~-------~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 143 (468)
...........+....... +.++.+.+++ .+||+|++|...+++..+|+.+|||++.+.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~ 146 (391)
T 3tsa_A 71 FPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA----WRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVD 146 (391)
T ss_dssp SCCGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCC
T ss_pred ccccccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHh----cCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCc
Confidence 0001112222222222222 5555555554 5699999998777888999999999998764321
Q ss_pred HHHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhc-----cccE
Q 012212 144 GSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVK-----ISNW 218 (468)
Q Consensus 144 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 218 (468)
.... ...........+...... ..+.
T Consensus 147 ~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (391)
T 3tsa_A 147 PTAG-------------------------------------------------PFSDRAHELLDPVCRHHGLTGLPTPEL 177 (391)
T ss_dssp CTTT-------------------------------------------------HHHHHHHHHHHHHHHHTTSSSSCCCSE
T ss_pred cccc-------------------------------------------------cccchHHHHHHHHHHHcCCCCCCCCce
Confidence 0000 000011111122222222 2266
Q ss_pred EEEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc--CC-HHHHHHH
Q 012212 219 IINNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV--LS-QQQFAEL 295 (468)
Q Consensus 219 ~l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~--~~-~~~~~~~ 295 (468)
.+..+.++++.+.......+.++ |.. .+..+..|+...+++++||+++||... .. ..++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~-p~~--------------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~ 242 (391)
T 3tsa_A 178 ILDPCPPSLQASDAPQGAPVQYV-PYN--------------GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAV 242 (391)
T ss_dssp EEECSCGGGSCTTSCCCEECCCC-CCC--------------CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHH
T ss_pred EEEecChhhcCCCCCccCCeeee-cCC--------------CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHH
Confidence 67777777665421111122233 110 122233566655667899999999832 23 7788888
Q ss_pred HHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCcee
Q 012212 296 ALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFL 374 (468)
Q Consensus 296 ~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v 374 (468)
+++ .+. +.+++|+.++. ....+. ..++|+++.+|+|+.+++.++ ++||||||.||+.||+++|+|+|
T Consensus 243 ~~~-~~~p~~~~v~~~~~~----~~~~l~-----~~~~~v~~~~~~~~~~ll~~a--d~~v~~~G~~t~~Ea~~~G~P~v 310 (391)
T 3tsa_A 243 AAA-TELPGVEAVIAVPPE----HRALLT-----DLPDNARIAESVPLNLFLRTC--ELVICAGGSGTAFTATRLGIPQL 310 (391)
T ss_dssp HHH-HTSTTEEEEEECCGG----GGGGCT-----TCCTTEEECCSCCGGGTGGGC--SEEEECCCHHHHHHHHHTTCCEE
T ss_pred HHh-ccCCCeEEEEEECCc----chhhcc-----cCCCCEEEeccCCHHHHHhhC--CEEEeCCCHHHHHHHHHhCCCEE
Confidence 888 877 66777776543 111121 236889999999999999555 55999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeEeec--cCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFFA--DENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFES 452 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~~--~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 452 (468)
++|...||..|+.++++. |+|+.++. ++ .+.+.|.++|.++|+|++++++++++++++.+ .+++.+.++.
T Consensus 311 ~~p~~~~q~~~a~~~~~~-g~g~~~~~~~~~---~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 382 (391)
T 3tsa_A 311 VLPQYFDQFDYARNLAAA-GAGICLPDEQAQ---SDHEQFTDSIATVLGDTGFAAAAIKLSDEITA----MPHPAALVRT 382 (391)
T ss_dssp ECCCSTTHHHHHHHHHHT-TSEEECCSHHHH---TCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHT----SCCHHHHHHH
T ss_pred ecCCcccHHHHHHHHHHc-CCEEecCccccc---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc----CCCHHHHHHH
Confidence 999999999999999995 99999987 66 89999999999999999999999999999977 5555444443
Q ss_pred H
Q 012212 453 F 453 (468)
Q Consensus 453 ~ 453 (468)
+
T Consensus 383 i 383 (391)
T 3tsa_A 383 L 383 (391)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=2e-33 Score=275.78 Aligned_cols=359 Identities=18% Similarity=0.217 Sum_probs=244.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCC-----------
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGL----------- 71 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~----------- 71 (468)
.+|||+|++.++.||++|++.||++|.++||+|++++++...+.+.. .++.+..++...
T Consensus 19 ~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 19 RHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRK----------LGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp CSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH----------TTCEEEECCCCHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHh----------cCCceeecCcccccchhhhhhhh
Confidence 46899999999999999999999999999999999999877666666 568888887410
Q ss_pred -CCCcCCCCCHH----HHHHHHHHH-hhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchHH
Q 012212 72 -ELQAADREDPL----KLGESVARA-MRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPGS 145 (468)
Q Consensus 72 -~~~~~~~~~~~----~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (468)
........... .....+... ....+..+.+.+++ .+||+||+|....++..+|+.+|||++.........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~ 164 (412)
T 3otg_A 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIER----LRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP 164 (412)
T ss_dssp HSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHH----HCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC
T ss_pred hcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHh----cCCCEEEECchhhHHHHHHHHcCCCEEEecccccCc
Confidence 00000000011 111122211 12223444444443 569999999877788889999999999865432210
Q ss_pred HHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHh----------hcc
Q 012212 146 LALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQA----------VKI 215 (468)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 215 (468)
... .......+.+.... ...
T Consensus 165 ~~~--------------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (412)
T 3otg_A 165 DDL--------------------------------------------------TRSIEEEVRGLAQRLGLDLPPGRIDGF 194 (412)
T ss_dssp SHH--------------------------------------------------HHHHHHHHHHHHHHTTCCCCSSCCGGG
T ss_pred hhh--------------------------------------------------hHHHHHHHHHHHHHcCCCCCcccccCC
Confidence 000 00011111111111 124
Q ss_pred ccEEEEcCcccCChhhhccCCCceeeccccCCCCCCCCCCCCCCCCCchhhh-hhcccCccEEEEEecccccCCHHHHHH
Q 012212 216 SNWIINNSVYELDSPACDLIPNILPIGPLLASNHSGDLDGNFWSEDSSCLSW-LDEQAIRSVVYVAFGSVAVLSQQQFAE 294 (468)
Q Consensus 216 ~~~~l~~~~~~le~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vv~vs~Gs~~~~~~~~~~~ 294 (468)
++.++..+.+.++.+..........+.+.... ......+| ....+++++||+++|+......+.+..
T Consensus 195 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~ 262 (412)
T 3otg_A 195 GNPFIDIFPPSLQEPEFRARPRRHELRPVPFA------------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRA 262 (412)
T ss_dssp GCCEEECSCGGGSCHHHHTCTTEEECCCCCCC------------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHH
T ss_pred CCeEEeeCCHHhcCCcccCCCCcceeeccCCC------------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHH
Confidence 56677777777766532222211111111111 11223345 232345679999999986667888999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhhhcCCcee
Q 012212 295 LALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFL 374 (468)
Q Consensus 295 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v 374 (468)
+++++.+.+.+++|+.++... ...+. ..++|+++.+|+|+.++|+++++ ||+|||+||+.||+++|+|+|
T Consensus 263 ~~~~l~~~~~~~~~~~g~~~~---~~~l~-----~~~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v 332 (412)
T 3otg_A 263 AIDGLAGLDADVLVASGPSLD---VSGLG-----EVPANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQL 332 (412)
T ss_dssp HHHHHHTSSSEEEEECCSSCC---CTTCC-----CCCTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEE
T ss_pred HHHHHHcCCCEEEEEECCCCC---hhhhc-----cCCCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEE
Confidence 999999888888888876510 11111 23678899999999999977665 999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 012212 375 CWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFI 454 (468)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (468)
++|...||..|+.++++. |.|+.++..+ .++++|.++|.++|+|+++++++.+.++++.+ ..+..+.++.+.
T Consensus 333 ~~p~~~~q~~~~~~v~~~-g~g~~~~~~~---~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 404 (412)
T 3otg_A 333 SFPWAGDSFANAQAVAQA-GAGDHLLPDN---ISPDSVSGAAKRLLAEESYRAGARAVAAEIAA----MPGPDEVVRLLP 404 (412)
T ss_dssp ECCCSTTHHHHHHHHHHH-TSEEECCGGG---CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----SCCHHHHHTTHH
T ss_pred ecCCchhHHHHHHHHHHc-CCEEecCccc---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 999999999999999995 9999999876 89999999999999999999999999999887 445444444443
Q ss_pred H
Q 012212 455 S 455 (468)
Q Consensus 455 ~ 455 (468)
+
T Consensus 405 ~ 405 (412)
T 3otg_A 405 G 405 (412)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=5.6e-29 Score=239.06 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=195.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH--HHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK--KIIASLQEKAEDSSSQIKLVTIPDGLELQAADR 78 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~--~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 78 (468)
|++ ||++...++.||++|.++||++|.++||+|+|+++....+ .+.+ .++.++.++..-.......
T Consensus 1 M~~--~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~----------~g~~~~~i~~~~~~~~~~~ 68 (365)
T 3s2u_A 1 MKG--NVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPK----------AGLPLHLIQVSGLRGKGLK 68 (365)
T ss_dssp --C--EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGG----------GTCCEEECC----------
T ss_pred CCC--cEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhh----------cCCcEEEEECCCcCCCCHH
Confidence 554 9999988888999999999999999999999999875432 2333 4577777763211111011
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhhHh
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPKLL 156 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 156 (468)
..+...+..+ .... ....++++ .+||+||.+.... .+..+|+.+|||+++.-..
T Consensus 69 ~~~~~~~~~~-~~~~-~~~~~l~~-------~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n--------------- 124 (365)
T 3s2u_A 69 SLVKAPLELL-KSLF-QALRVIRQ-------LRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQN--------------- 124 (365)
T ss_dssp ----CHHHHH-HHHH-HHHHHHHH-------HCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECS---------------
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHh-------cCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecc---------------
Confidence 1111112211 1111 12344444 5699999997655 4557899999999863210
Q ss_pred hcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhccCC
Q 012212 157 EAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDLIP 236 (468)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p 236 (468)
..|+.. + +.. .+.++.++... ++. .+...
T Consensus 125 -------------------~~~G~~----------------------n---r~l--~~~a~~v~~~~-~~~----~~~~~ 153 (365)
T 3s2u_A 125 -------------------AVAGTA----------------------N---RSL--APIARRVCEAF-PDT----FPASD 153 (365)
T ss_dssp -------------------SSCCHH----------------------H---HHH--GGGCSEEEESS-TTS----SCC--
T ss_pred -------------------hhhhhH----------------------H---Hhh--ccccceeeecc-ccc----ccCcC
Confidence 001000 0 000 11233333322 211 12234
Q ss_pred CceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCC----CCEEEEEcC
Q 012212 237 NILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQ----KPFLWVIRQ 312 (468)
Q Consensus 237 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~----~~~l~~~~~ 312 (468)
+..++|.......... .. .+....+++++|++..||... ....+.+.+++..+. ..++++++.
T Consensus 154 k~~~~g~pvr~~~~~~-------~~----~~~~~~~~~~~ilv~gGs~g~--~~~~~~~~~al~~l~~~~~~~vi~~~G~ 220 (365)
T 3s2u_A 154 KRLTTGNPVRGELFLD-------AH----ARAPLTGRRVNLLVLGGSLGA--EPLNKLLPEALAQVPLEIRPAIRHQAGR 220 (365)
T ss_dssp -CEECCCCCCGGGCCC-------TT----SSCCCTTSCCEEEECCTTTTC--SHHHHHHHHHHHTSCTTTCCEEEEECCT
T ss_pred cEEEECCCCchhhccc-------hh----hhcccCCCCcEEEEECCcCCc--cccchhhHHHHHhcccccceEEEEecCc
Confidence 5666775443322110 00 011122345689998888743 233445666766543 345555543
Q ss_pred CCCCCcccCCchhHHHHhCCCceEEcccCh-HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc----cchhhhHH
Q 012212 313 DFMNGSRAKFPDGFIERVSNRGKIVEWAPQ-EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF----SDQYQNRN 387 (468)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~-~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~----~DQ~~na~ 387 (468)
. ..+.+ .......+.++.+.+|+++ .++++.+++ +|||+|.+|+.|++++|+|+|++|+. .+|..||+
T Consensus 221 ~----~~~~~-~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~ 293 (365)
T 3s2u_A 221 Q----HAEIT-AERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAE 293 (365)
T ss_dssp T----THHHH-HHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHH
T ss_pred c----ccccc-cceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHH
Confidence 3 11111 1112334678999999987 578966655 99999999999999999999999863 58999999
Q ss_pred HHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012212 388 YICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 388 rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~ 438 (468)
.+++. |+|+.++.++ +|++.|.++|.++|+|++.++ +|++..++
T Consensus 294 ~l~~~-G~a~~l~~~~---~~~~~L~~~i~~ll~d~~~~~---~m~~~a~~ 337 (365)
T 3s2u_A 294 FLVRS-GAGRLLPQKS---TGAAELAAQLSEVLMHPETLR---SMADQARS 337 (365)
T ss_dssp HHHTT-TSEEECCTTT---CCHHHHHHHHHHHHHCTHHHH---HHHHHHHH
T ss_pred HHHHC-CCEEEeecCC---CCHHHHHHHHHHHHCCHHHHH---HHHHHHHh
Confidence 99996 9999999877 999999999999999988655 44455554
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=211.63 Aligned_cols=164 Identities=20% Similarity=0.415 Sum_probs=141.5
Q ss_pred CCCCchhhhhhcccCccEEEEEecccc-cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEE
Q 012212 259 SEDSSCLSWLDEQAIRSVVYVAFGSVA-VLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIV 337 (468)
Q Consensus 259 ~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~ 337 (468)
+.++++.+|++..+++++||+++||.. ....+.+..+++++.+.+.+++|+.++. . ++. .++|+++.
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~----~----~~~----~~~~v~~~ 73 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN----K----PDT----LGLNTRLY 73 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS----C----CTT----CCTTEEEE
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc----C----ccc----CCCcEEEe
Confidence 477889999987767789999999984 4577888999999998888899888654 1 111 26788999
Q ss_pred cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHH
Q 012212 338 EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVL 417 (468)
Q Consensus 338 ~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~ 417 (468)
+|+||.+++.|+.+++||||||+||++||+++|+|+|++|...||..||.++++. |+|+.++..+ ++.++|.++|.
T Consensus 74 ~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~-g~g~~~~~~~---~~~~~l~~~i~ 149 (170)
T 2o6l_A 74 KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR-GAAVRVDFNT---MSSTDLLNALK 149 (170)
T ss_dssp SSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT-TSEEECCTTT---CCHHHHHHHHH
T ss_pred cCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc-CCeEEecccc---CCHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999999995 9999998776 89999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHH
Q 012212 418 TLLKNDDIRSNSLKLKEVARK 438 (468)
Q Consensus 418 ~~l~~~~~r~~a~~l~~~~~~ 438 (468)
++|+|++||++++++++++++
T Consensus 150 ~ll~~~~~~~~a~~~~~~~~~ 170 (170)
T 2o6l_A 150 RVINDPSYKENVMKLSRIQHD 170 (170)
T ss_dssp HHHHCHHHHHHHHHHC-----
T ss_pred HHHcCHHHHHHHHHHHHHhhC
Confidence 999999999999999998864
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.89 E-value=8.2e-22 Score=189.73 Aligned_cols=339 Identities=14% Similarity=0.056 Sum_probs=202.5
Q ss_pred CCC-C-CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH--HHHHhhhhhccCCCCCeEEEEcCCCCCCCcC
Q 012212 1 MSR-Q-PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK--KIIASLQEKAEDSSSQIKLVTIPDGLELQAA 76 (468)
Q Consensus 1 m~~-~-~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~--~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (468)
||+ | |||++++.+..||..++..||++|.++||+|++++...... .+.. .++.+..++.....
T Consensus 1 mM~~m~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~--- 67 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPK----------HGIEIDFIRISGLR--- 67 (364)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGG----------GTCEEEECCCCCCT---
T ss_pred CCCCCCcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccc----------cCCceEEecCCccC---
Confidence 544 4 89999987777999999999999999999999999875422 2222 35777766532111
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
.......+....... ..+..+.+.+++ .+||+|+++.... .+..+++.+|+|++.......
T Consensus 68 -~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~----------- 130 (364)
T 1f0k_A 68 -GKGIKALIAAPLRIF-NAWRQARAIMKA----YKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGI----------- 130 (364)
T ss_dssp -TCCHHHHHTCHHHHH-HHHHHHHHHHHH----HCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSS-----------
T ss_pred -cCccHHHHHHHHHHH-HHHHHHHHHHHh----cCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCC-----------
Confidence 111111111111111 123333444443 4699999996542 456678889999986432100
Q ss_pred HhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL 234 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 234 (468)
++ . .. +. ....++.++..+...
T Consensus 131 -----------------------~~------------------~----~~---~~--~~~~~d~v~~~~~~~-------- 152 (364)
T 1f0k_A 131 -----------------------AG------------------L----TN---KW--LAKIATKVMQAFPGA-------- 152 (364)
T ss_dssp -----------------------CC------------------H----HH---HH--HTTTCSEEEESSTTS--------
T ss_pred -----------------------Cc------------------H----HH---HH--HHHhCCEEEecChhh--------
Confidence 00 0 00 00 022455666544322
Q ss_pred CCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEcC
Q 012212 235 IPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESL--QKPFLWVIRQ 312 (468)
Q Consensus 235 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~l~~~~~ 312 (468)
.+++..+|......... .+. ....+...+++++|++..|+.. .......+++++..+ +.+++++++.
T Consensus 153 ~~~~~~i~n~v~~~~~~--------~~~-~~~~~~~~~~~~~il~~~g~~~--~~k~~~~li~a~~~l~~~~~~l~i~G~ 221 (364)
T 1f0k_A 153 FPNAEVVGNPVRTDVLA--------LPL-PQQRLAGREGPVRVLVVGGSQG--ARILNQTMPQVAAKLGDSVTIWHQSGK 221 (364)
T ss_dssp SSSCEECCCCCCHHHHT--------SCC-HHHHHTTCCSSEEEEEECTTTC--CHHHHHHHHHHHHHHGGGEEEEEECCT
T ss_pred cCCceEeCCccchhhcc--------cch-hhhhcccCCCCcEEEEEcCchH--hHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 12455555422211100 000 1112222234457777777763 344455566666544 3455566654
Q ss_pred CCCCCcccCCchhHHH---HhC-CCceEEcccCh-HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccc---cchhh
Q 012212 313 DFMNGSRAKFPDGFIE---RVS-NRGKIVEWAPQ-EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYF---SDQYQ 384 (468)
Q Consensus 313 ~~~~~~~~~~~~~~~~---~~~-~nv~~~~~~p~-~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~---~DQ~~ 384 (468)
+ . .+.+.+ +.. +||++.+|+++ ..++..+++ +|+++|.+++.||+++|+|+|+.+.. .||..
T Consensus 222 ~----~----~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 222 G----S----QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp T----C----HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred c----h----HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 4 1 123322 222 58999999954 778876666 99999999999999999999999987 79999
Q ss_pred hHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 385 NRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 385 na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
|+..+.+. |.|+.++..+ .+.+++.++|.++ |++.+++..+-+.++. +..+..+.++.+.+.++
T Consensus 292 ~~~~~~~~-g~g~~~~~~d---~~~~~la~~i~~l--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 292 NALPLEKA-GAAKIIEQPQ---LSVDAVANTLAGW--SRETLLTMAERARAAS----IPDATERVANEVSRVAR 355 (364)
T ss_dssp HHHHHHHT-TSEEECCGGG---CCHHHHHHHHHTC--CHHHHHHHHHHHHHTC----CTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CcEEEecccc---CCHHHHHHHHHhc--CHHHHHHHHHHHHHhh----ccCHHHHHHHHHHHHHH
Confidence 99999996 9999998765 7799999999988 7887766555444332 23344444444444443
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.70 E-value=7.7e-16 Score=140.19 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=87.5
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccCh-HHHhcCCC
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQ-EKVLGHSS 350 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~-~~ll~~~~ 350 (468)
.+.|+|++|+.. .......+++++.+.. ++.++++.. ....+.+.+.. .+|+.+.+|+++ .+++..++
T Consensus 157 ~~~ILv~~GG~d--~~~l~~~vl~~L~~~~-~i~vv~G~~------~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aD 227 (282)
T 3hbm_A 157 KYDFFICMGGTD--IKNLSLQIASELPKTK-IISIATSSS------NPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESN 227 (282)
T ss_dssp CEEEEEECCSCC--TTCHHHHHHHHSCTTS-CEEEEECTT------CTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEE
T ss_pred CCeEEEEECCCc--hhhHHHHHHHHhhcCC-CEEEEECCC------chHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCC
Confidence 457999999753 2335667788876544 566676655 12223332221 358999999987 56886555
Q ss_pred CCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 351 VACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
+ +|++|| +|++|+++.|+|+|++|...+|..||..+++. |+++.+..-
T Consensus 228 l--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~~~~~~~ 275 (282)
T 3hbm_A 228 K--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKK-GYEVEYKYL 275 (282)
T ss_dssp E--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCEEECGGG
T ss_pred E--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCEEEcchh
Confidence 5 999999 89999999999999999999999999999995 999998763
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.59 E-value=2.6e-15 Score=130.99 Aligned_cols=131 Identities=11% Similarity=0.128 Sum_probs=92.8
Q ss_pred cCccEEEEEecccccCCHHHHHHH-----HHHHHhCC-CCEEEEEcCCCCCCcccCCchhHHHHh---------------
Q 012212 272 AIRSVVYVAFGSVAVLSQQQFAEL-----ALGLESLQ-KPFLWVIRQDFMNGSRAKFPDGFIERV--------------- 330 (468)
Q Consensus 272 ~~~~vv~vs~Gs~~~~~~~~~~~~-----~~a~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 330 (468)
+++++|||+.||... -.+.+..+ ++++.+.+ .++++.++... .. ....+.+..
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~----~~-~~~~~~~~~~~~~~~~l~p~~~~~ 99 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNY----SS-EFEHLVQERGGQRESQKIPIDQFG 99 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSS----CC-CCCSHHHHHTCEECSCCCSSCTTC
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCc----hh-hHHHHHHhhhcccccccccccccc
Confidence 456789999999732 34444444 47887777 68888887651 10 111111111
Q ss_pred -----------CC--CceEEcccCh-HHHhc-CCCCCceeeccCchhHHHhhhcCCceeccccc----cchhhhHHHHHH
Q 012212 331 -----------SN--RGKIVEWAPQ-EKVLG-HSSVACFISHCGWNSTMEGLSMGVPFLCWPYF----SDQYQNRNYICE 391 (468)
Q Consensus 331 -----------~~--nv~~~~~~p~-~~ll~-~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~----~DQ~~na~rv~~ 391 (468)
.. ++.+.+|+++ .++++ .+++ +|||||+||++|++++|+|+|++|.. .+|..||+++++
T Consensus 100 ~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~ 177 (224)
T 2jzc_A 100 CGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVE 177 (224)
T ss_dssp TTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHH
T ss_pred ccccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHH
Confidence 12 3345588877 57896 6666 99999999999999999999999974 469999999999
Q ss_pred HhhceeEeeccCCCccCHHHHHHHHHHH
Q 012212 392 AWKIGLQFFADENGIITRQEIQRKVLTL 419 (468)
Q Consensus 392 ~lG~g~~l~~~~~~~~t~~~l~~ai~~~ 419 (468)
. |+++.+ +.+.|.++|+++
T Consensus 178 ~-G~~~~~--------~~~~L~~~i~~l 196 (224)
T 2jzc_A 178 L-GYVWSC--------APTETGLIAGLR 196 (224)
T ss_dssp H-SCCCEE--------CSCTTTHHHHHH
T ss_pred C-CCEEEc--------CHHHHHHHHHHH
Confidence 5 998765 456677777776
No 25
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.54 E-value=1.7e-12 Score=125.77 Aligned_cols=351 Identities=13% Similarity=0.065 Sum_probs=187.1
Q ss_pred CCCCCEEEEEcC--C--CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcC
Q 012212 1 MSRQPHVLVIPY--P--AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAA 76 (468)
Q Consensus 1 m~~~~~Il~~~~--~--~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (468)
|++||||++++. + ..|.-..+..|++.| +||+|++++........... ....++.+..++......
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-- 70 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAY------DKTLDYEVIRWPRSVMLP-- 70 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHH------HTTCSSEEEEESSSSCCS--
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhh------ccccceEEEEcccccccc--
Confidence 889999998864 2 458888999999999 79999999998765432222 112677888777532111
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHHHHhhhhh
Q 012212 77 DREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLALSLQFPK 154 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 154 (468)
.. .....+.++++. .+||+|++..... ....++..+++|.+++.........
T Consensus 71 ---~~---------~~~~~l~~~~~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------- 124 (394)
T 3okp_A 71 ---TP---------TTAHAMAEIIRE-------REIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW------- 124 (394)
T ss_dssp ---CH---------HHHHHHHHHHHH-------TTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH-------
T ss_pred ---ch---------hhHHHHHHHHHh-------cCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh-------
Confidence 11 111123344444 5699999875544 4555678899984443322111000
Q ss_pred HhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc
Q 012212 155 LLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL 234 (468)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 234 (468)
.. ........ ...+..+|.++..+....+.-....
T Consensus 125 --------------------------------------~~-~~~~~~~~------~~~~~~~d~ii~~s~~~~~~~~~~~ 159 (394)
T 3okp_A 125 --------------------------------------SM-LPGSRQSL------RKIGTEVDVLTYISQYTLRRFKSAF 159 (394)
T ss_dssp --------------------------------------TT-SHHHHHHH------HHHHHHCSEEEESCHHHHHHHHHHH
T ss_pred --------------------------------------hh-cchhhHHH------HHHHHhCCEEEEcCHHHHHHHHHhc
Confidence 00 00000111 1123467888888775544332212
Q ss_pred --CCCceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHHhC--CCCEEEE
Q 012212 235 --IPNILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLESL--QKPFLWV 309 (468)
Q Consensus 235 --~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~l~~ 309 (468)
..++..+...+...... .........+.+.+... ++..+++..|+... -..+.+...+..+.+. +.++++
T Consensus 160 ~~~~~~~vi~ngv~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i- 234 (394)
T 3okp_A 160 GSHPTFEHLPSGVDVKRFT---PATPEDKSATRKKLGFT-DTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLI- 234 (394)
T ss_dssp CSSSEEEECCCCBCTTTSC---CCCHHHHHHHHHHTTCC-TTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEE-
T ss_pred CCCCCeEEecCCcCHHHcC---CCCchhhHHHHHhcCCC-cCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEE-
Confidence 23444444333221111 00000011111222212 22256666787621 1223333333333222 334443
Q ss_pred EcCCCCCCcccCCchhHH---HHhCCCceEEcccChHH---HhcCCCCCceee-----------ccCchhHHHhhhcCCc
Q 012212 310 IRQDFMNGSRAKFPDGFI---ERVSNRGKIVEWAPQEK---VLGHSSVACFIS-----------HCGWNSTMEGLSMGVP 372 (468)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~p~~~---ll~~~~~~~~I~-----------hGG~~s~~eal~~GvP 372 (468)
++.+ .....+. ....++|++.+|+|+.+ ++..+++ +|. -|..+++.||+++|+|
T Consensus 235 ~G~g-------~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~P 305 (394)
T 3okp_A 235 VGSG-------RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVP 305 (394)
T ss_dssp ECCC-------TTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCC
T ss_pred EcCc-------hHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCC
Confidence 3332 1222222 22357899999998755 5656655 776 5666899999999999
Q ss_pred eeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHH-HHHHhcCCCchHHHHH
Q 012212 373 FLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEV-ARKSLLGGGSSFRNFE 451 (468)
Q Consensus 373 ~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~-~~~~~~~~g~~~~~~~ 451 (468)
+|+.+.. .....+.+ |.|+.++. -+.+++.++|.++++|++.+++..+-+.. .++ .=+.....+
T Consensus 306 vI~~~~~----~~~e~i~~--~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~ 370 (394)
T 3okp_A 306 VIAGTSG----GAPETVTP--ATGLVVEG-----SDVDKLSELLIELLDDPIRRAAMGAAGRAHVEA----EWSWEIMGE 370 (394)
T ss_dssp EEECSST----TGGGGCCT--TTEEECCT-----TCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTBHHHHHH
T ss_pred EEEeCCC----ChHHHHhc--CCceEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH----hCCHHHHHH
Confidence 9997642 33333333 57777765 46999999999999998855544333322 222 124456666
Q ss_pred HHHHHHHhhc
Q 012212 452 SFISDIKMLI 461 (468)
Q Consensus 452 ~~~~~~~~~~ 461 (468)
++++.++++.
T Consensus 371 ~~~~~~~~~~ 380 (394)
T 3okp_A 371 RLTNILQSEP 380 (394)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHHhc
Confidence 6666666554
No 26
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.54 E-value=5.8e-12 Score=123.89 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=173.9
Q ss_pred CCCCEEEEEcC-----------CCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCC
Q 012212 2 SRQPHVLVIPY-----------PAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDG 70 (468)
Q Consensus 2 ~~~~~Il~~~~-----------~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~ 70 (468)
.+||||++++. ...|+-.....||++|.++||+|++++.......-... ....++.++.++..
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~~v~v~~~~~~ 91 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIV------RVAENLRVINIAAG 91 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEE------EEETTEEEEEECCS
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccc------cccCCeEEEEecCC
Confidence 46899999974 23588889999999999999999999976532110000 01156777777643
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHH-HhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchHHHH
Q 012212 71 LELQAADREDPLKLGESVARAMRGCLRDLIEK-INQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPGSLA 147 (468)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~ 147 (468)
..... ........+..+ ...+++. ++.. .+||+|++..... .+..+++.+++|+|..........
T Consensus 92 ~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~- 159 (438)
T 3c48_A 92 PYEGL-SKEELPTQLAAF-------TGGMLSFTRREK---VTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK- 159 (438)
T ss_dssp CSSSC-CGGGGGGGHHHH-------HHHHHHHHHHHT---CCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHH-
T ss_pred Ccccc-chhHHHHHHHHH-------HHHHHHHHHhcc---CCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccc-
Confidence 21110 111111111111 1122222 2221 2499999875322 334567888999987665432110
Q ss_pred HHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccC
Q 012212 148 LSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYEL 227 (468)
Q Consensus 148 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 227 (468)
. .... ..... ........ ....+..+|.++..+....
T Consensus 160 ---~-------~~~~------------------------------~~~~~-~~~~~~~~--~~~~~~~~d~ii~~s~~~~ 196 (438)
T 3c48_A 160 ---N-------SYRD------------------------------DSDTP-ESEARRIC--EQQLVDNADVLAVNTQEEM 196 (438)
T ss_dssp ---S-------CC----------------------------------CCH-HHHHHHHH--HHHHHHHCSEEEESSHHHH
T ss_pred ---c-------cccc------------------------------ccCCc-chHHHHHH--HHHHHhcCCEEEEcCHHHH
Confidence 0 0000 00000 00000000 1122457888888887654
Q ss_pred Chhhhcc--C-CCceeeccccCCCCCCCCCCCCCCCCCc---hhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHH
Q 012212 228 DSPACDL--I-PNILPIGPLLASNHSGDLDGNFWSEDSS---CLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLE 300 (468)
Q Consensus 228 e~~~~~~--~-p~v~~vGpl~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~ 300 (468)
+.-...+ . .++..+...+...... . ..... +.+.+...++ ..+++..|+... -..+.+...+..+.
T Consensus 197 ~~~~~~~g~~~~k~~vi~ngvd~~~~~---~---~~~~~~~~~r~~~~~~~~-~~~i~~~G~~~~~Kg~~~li~a~~~l~ 269 (438)
T 3c48_A 197 QDLMHHYDADPDRISVVSPGADVELYS---P---GNDRATERSRRELGIPLH-TKVVAFVGRLQPFKGPQVLIKAVAALF 269 (438)
T ss_dssp HHHHHHHCCCGGGEEECCCCCCTTTSC---C---C----CHHHHHHTTCCSS-SEEEEEESCBSGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhheEEecCCccccccC---C---cccchhhhhHHhcCCCCC-CcEEEEEeeecccCCHHHHHHHHHHHH
Confidence 4331112 1 2344444333221111 0 00111 2222222222 356666787632 12233333333332
Q ss_pred -hCC-CCEE-EEEcCCCCCCcccCCchhHHH---H--hCCCceEEcccChH---HHhcCCCCCceeec----cCchhHHH
Q 012212 301 -SLQ-KPFL-WVIRQDFMNGSRAKFPDGFIE---R--VSNRGKIVEWAPQE---KVLGHSSVACFISH----CGWNSTME 365 (468)
Q Consensus 301 -~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~---~--~~~nv~~~~~~p~~---~ll~~~~~~~~I~h----GG~~s~~e 365 (468)
+.+ .++. +.++.. .. .....+.+.+ + ..++|++.+|+|+. .++..+++ +|.- |...++.|
T Consensus 270 ~~~p~~~~~l~i~G~~-~~--~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~E 344 (438)
T 3c48_A 270 DRDPDRNLRVIICGGP-SG--PNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAME 344 (438)
T ss_dssp HHCTTCSEEEEEECCB-C--------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHH
T ss_pred hhCCCcceEEEEEeCC-CC--CCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHH
Confidence 221 2333 333331 00 0011222222 2 25789999999874 46766665 7754 33568999
Q ss_pred hhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHH
Q 012212 366 GLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRS 427 (468)
Q Consensus 366 al~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~ 427 (468)
|+++|+|+|+.+ .......+++. +.|+.++. -+.++++++|.++++|++.++
T Consensus 345 ama~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~l~~~~~~~~ 396 (438)
T 3c48_A 345 AQASGTPVIAAR----VGGLPIAVAEG-ETGLLVDG-----HSPHAWADALATLLDDDETRI 396 (438)
T ss_dssp HHHTTCCEEEES----CTTHHHHSCBT-TTEEEESS-----CCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHcCCCEEecC----CCChhHHhhCC-CcEEECCC-----CCHHHHHHHHHHHHcCHHHHH
Confidence 999999999974 34555566553 67888865 468999999999999987543
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.46 E-value=9.1e-13 Score=126.95 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=85.3
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccCh---H
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQ---E 343 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~---~ 343 (468)
+++|+++.|...... -+..+++++..+ +.++++..+.+ ..+.+.+.+.. .++|++.+++++ .
T Consensus 198 ~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~------~~~~~~l~~~~~~~~~v~~~g~~g~~~~~ 269 (376)
T 1v4v_A 198 GPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLN------PVVREAVFPVLKGVRNFVLLDPLEYGSMA 269 (376)
T ss_dssp SCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSC------HHHHHHHHHHHTTCTTEEEECCCCHHHHH
T ss_pred CCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCC------HHHHHHHHHHhccCCCEEEECCCCHHHHH
Confidence 456777777542221 244555655432 33444333322 01112222221 358888866665 4
Q ss_pred HHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 344 KVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 344 ~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
.+++.+++ ||+.+| |.+.||+++|+|+|+.+..+++... .+. |.|+.++ .+.++|.++|.++|+|+
T Consensus 270 ~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~~----~~~-g~g~lv~------~d~~~la~~i~~ll~d~ 335 (376)
T 1v4v_A 270 ALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPEG----LKA-GILKLAG------TDPEGVYRVVKGLLENP 335 (376)
T ss_dssp HHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHHH----HHH-TSEEECC------SCHHHHHHHHHHHHTCH
T ss_pred HHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchhh----hcC-CceEECC------CCHHHHHHHHHHHHhCh
Confidence 68866655 999883 4466999999999998766666552 354 8888774 36899999999999998
Q ss_pred HHHHHHHH
Q 012212 424 DIRSNSLK 431 (468)
Q Consensus 424 ~~r~~a~~ 431 (468)
+.+++..+
T Consensus 336 ~~~~~~~~ 343 (376)
T 1v4v_A 336 EELSRMRK 343 (376)
T ss_dssp HHHHHHHH
T ss_pred Hhhhhhcc
Confidence 76655443
No 28
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.46 E-value=6.8e-11 Score=116.07 Aligned_cols=399 Identities=12% Similarity=-0.021 Sum_probs=194.5
Q ss_pred CCCEEEEEcCC-----CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH------hh----hhhccCCCCCeEEEEc
Q 012212 3 RQPHVLVIPYP-----AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA------SL----QEKAEDSSSQIKLVTI 67 (468)
Q Consensus 3 ~~~~Il~~~~~-----~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~------~~----~~~~~~~~~~i~~~~~ 67 (468)
|+|||++++.. ..|--.-+..||++|+++||+|+++++......-.. .+ .........++.+..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 57899998732 346666789999999999999999996532211000 00 0000001256777766
Q ss_pred CCCCCCCcCCCCCHHHH-HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEcccchH
Q 012212 68 PDGLELQAADREDPLKL-GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
+...............- ...+.. ....+..+++.+.... .+||+|.+..... .+..+++..++|+|........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~ 157 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVT-FGRASVLLLNDLLREE--PLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNK 157 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHH-HHHHHHHHHHHHTTTS--CCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCCC
T ss_pred cchhccccccccCCcchhhhhhHH-HHHHHHHHHHHHhccC--CCCeEEEecchhhhhhHHHHhhccCCCEEEEeccccc
Confidence 65111111011111111 222221 2222334444442111 6799999986544 3456678889999886643320
Q ss_pred HHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCc
Q 012212 145 SLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSV 224 (468)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (468)
. .++ .. ......+.. .. +..... .. ...+..+|.++..+.
T Consensus 158 ~-------------------~~~-~~---~~~~~~~~~-----~~--~~~~~~----~~------~~~~~~ad~ii~~S~ 197 (439)
T 3fro_A 158 S-------------------KLP-AF---YFHEAGLSE-----LA--PYPDID----PE------HTGGYIADIVTTVSR 197 (439)
T ss_dssp C-------------------CEE-HH---HHHHTTCGG-----GC--CSSEEC----HH------HHHHHHCSEEEESCH
T ss_pred c-------------------cCc-hH---HhCcccccc-----cc--ccceee----Hh------hhhhhhccEEEecCH
Confidence 0 000 00 000000000 00 000000 00 111346788888776
Q ss_pred ccCChhhh--c-cCCCceeeccccCCCC-CCCCCC-CCCCCCCchhhhhhcccCccEEEEEecccc-c-CCHHHHHHHHH
Q 012212 225 YELDSPAC--D-LIPNILPIGPLLASNH-SGDLDG-NFWSEDSSCLSWLDEQAIRSVVYVAFGSVA-V-LSQQQFAELAL 297 (468)
Q Consensus 225 ~~le~~~~--~-~~p~v~~vGpl~~~~~-~~~~~~-~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~-~~~~~~~~~~~ 297 (468)
...+.... + ...++..+..-+.... .+.... ........+.+.+.. +++ .+++..|+.. . -..+.+...+.
T Consensus 198 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~G~~~~~~Kg~~~li~a~~ 275 (439)
T 3fro_A 198 GYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGM-DEG-VTFMFIGRFDRGQKGVDVLLKAIE 275 (439)
T ss_dssp HHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTC-CSC-EEEEEECCSSCTTBCHHHHHHHHH
T ss_pred HHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCC-CCC-cEEEEEcccccccccHHHHHHHHH
Confidence 54433111 1 1234444433222111 000000 000000111111221 223 5666678764 2 23344444444
Q ss_pred HHHhCC--CCEEEEEcCCCCCCcccCCchhH---HHHhCCCceEEcccChHH---HhcCCCCCceeec----cCchhHHH
Q 012212 298 GLESLQ--KPFLWVIRQDFMNGSRAKFPDGF---IERVSNRGKIVEWAPQEK---VLGHSSVACFISH----CGWNSTME 365 (468)
Q Consensus 298 a~~~~~--~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~~p~~~---ll~~~~~~~~I~h----GG~~s~~e 365 (468)
.+.+.. ..+-+.+-+.. . ....+.+ .++.++++.+.+|+|+.+ ++..+++ +|.- |-..++.|
T Consensus 276 ~l~~~~~~~~~~l~i~G~g---~-~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~E 349 (439)
T 3fro_A 276 ILSSKKEFQEMRFIIIGKG---D-PELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALE 349 (439)
T ss_dssp HHHTSGGGGGEEEEEECCC---C-HHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSE--EEECBSCCSSCHHHHH
T ss_pred HHHhcccCCCeEEEEEcCC---C-hhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCE--EEeCCCCCCccHHHHH
Confidence 444322 23333333320 0 0000111 222343444559999865 5655555 7732 33479999
Q ss_pred hhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhcCCC
Q 012212 366 GLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK-NDDIRSNSLKLKEVARKSLLGGG 444 (468)
Q Consensus 366 al~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g 444 (468)
|+++|+|+|+.. .......++. |.|..++. -+.++++++|.++++ |++.+++..+-+.+..+ .=
T Consensus 350 Ama~G~Pvi~s~----~~~~~e~~~~--~~g~~~~~-----~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~----~~ 414 (439)
T 3fro_A 350 AMCLGAIPIASA----VGGLRDIITN--ETGILVKA-----GDPGELANAILKALELSRSDLSKFRENCKKRAM----SF 414 (439)
T ss_dssp HHHTTCEEEEES----STHHHHHCCT--TTCEEECT-----TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH----TS
T ss_pred HHHCCCCeEEcC----CCCcceeEEc--CceEEeCC-----CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh----hC
Confidence 999999999874 4445554443 78888876 469999999999998 77755544433333322 33
Q ss_pred chHHHHHHHHHHHHhhcccCCCC
Q 012212 445 SSFRNFESFISDIKMLISGCDST 467 (468)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (468)
+....++++++.+++....+.++
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
T 3fro_A 415 SWEKSAERYVKAYTGSIDRAFDF 437 (439)
T ss_dssp CHHHHHHHHHHHHHTCSCCBCSS
T ss_pred cHHHHHHHHHHHHHHHHHhhhhh
Confidence 55777788888888777666554
No 29
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.44 E-value=3.5e-11 Score=120.48 Aligned_cols=357 Identities=13% Similarity=0.099 Sum_probs=179.1
Q ss_pred CCCCCEEEEEcCC---------------CccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccC--CCCCeE
Q 012212 1 MSRQPHVLVIPYP---------------AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAED--SSSQIK 63 (468)
Q Consensus 1 m~~~~~Il~~~~~---------------~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~--~~~~i~ 63 (468)
|+++|||++++.. ..|.-.....||++|.++||+|++++.............. ... ...++.
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-~~~~~~~~gv~ 82 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE-IDYYQETNKVR 82 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS-EEECTTCSSEE
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh-HHhccCCCCeE
Confidence 4567999998752 3577788999999999999999999975432110000000 000 025788
Q ss_pred EEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHhCCceEEEccc
Q 012212 64 LVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESMGIARAAVVPF 141 (468)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~~ 141 (468)
++.++....... ........+..+ ...+.+.+++.. .+||+|.+..... .+..++..+|+|+|+....
T Consensus 83 v~~~~~~~~~~~-~~~~~~~~~~~~-------~~~l~~~l~~~~--~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~ 152 (499)
T 2r60_A 83 IVRIPFGGDKFL-PKEELWPYLHEY-------VNKIINFYREEG--KFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHS 152 (499)
T ss_dssp EEEECCSCSSCC-CGGGCGGGHHHH-------HHHHHHHHHHHT--CCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSS
T ss_pred EEEecCCCcCCc-CHHHHHHHHHHH-------HHHHHHHHHhcC--CCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccC
Confidence 888774322110 011111111111 122222232211 3699999875332 3345678889999876554
Q ss_pred chHHHHHHhhhhhHhhcCCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHH---HHHHHHHHhhccccE
Q 012212 142 GPGSLALSLQFPKLLEAGIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILL---GIICAVIQAVKISNW 218 (468)
Q Consensus 142 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 218 (468)
...... . .... . . ...+ .....+ ....-....+..+|.
T Consensus 153 ~~~~~~-~---------~~~~-~--------------------------~-~~~~-~~~~~~~~~~~~~~~~~~~~~ad~ 193 (499)
T 2r60_A 153 LGAQKM-E---------KLNV-N--------------------------T-SNFK-EMDERFKFHRRIIAERLTMSYADK 193 (499)
T ss_dssp CHHHHH-H---------TTCC-C--------------------------S-TTSH-HHHHHHCHHHHHHHHHHHHHHCSE
T ss_pred cccccc-h---------hhcc-C--------------------------C-CCcc-hhhhhHHHHHHHHHHHHHHhcCCE
Confidence 322110 0 0000 0 0 0000 000000 000001123457889
Q ss_pred EEEcCcccCChhhhc--c-------C-CCceeeccccCCCCCCCCCCCCCCCC-----Cchhhhhh-----cccCccEEE
Q 012212 219 IINNSVYELDSPACD--L-------I-PNILPIGPLLASNHSGDLDGNFWSED-----SSCLSWLD-----EQAIRSVVY 278 (468)
Q Consensus 219 ~l~~~~~~le~~~~~--~-------~-p~v~~vGpl~~~~~~~~~~~~~~~~~-----~~l~~~l~-----~~~~~~vv~ 278 (468)
++..+...-+.-... + . .++..+..-+...... ..+ ..+.+-+. ...++ .++
T Consensus 194 vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~-------~~~~~~~~~~~r~~~~~~~~~~~~~~-~~i 265 (499)
T 2r60_A 194 IIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFD-------GEYGDKIKAKITKYLERDLGSERMEL-PAI 265 (499)
T ss_dssp EEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSS-------SCCCHHHHHHHHHHHHHHSCGGGTTS-CEE
T ss_pred EEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcC-------ccchhhhHHHHHHHhcccccccCCCC-cEE
Confidence 988887543321111 1 1 2343333222211100 011 11222222 11222 456
Q ss_pred EEecccccCCHHHHHHHHHHHHhCCC----C-EEEEEcCCCCCCcc-cCC-------chhHHHH-----hCCCceEEccc
Q 012212 279 VAFGSVAVLSQQQFAELALGLESLQK----P-FLWVIRQDFMNGSR-AKF-------PDGFIER-----VSNRGKIVEWA 340 (468)
Q Consensus 279 vs~Gs~~~~~~~~~~~~~~a~~~~~~----~-~l~~~~~~~~~~~~-~~~-------~~~~~~~-----~~~nv~~~~~~ 340 (468)
+..|+.. ...-+..+++++..+.. . .+++++...+.... ..+ .+.+.+. ..++|++.+++
T Consensus 266 ~~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v 343 (499)
T 2r60_A 266 IASSRLD--QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLN 343 (499)
T ss_dssp EECSCCC--GGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECC
T ss_pred EEeecCc--cccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCC
Confidence 6678763 23345666777765531 2 34555542000000 001 1222221 25789999999
Q ss_pred ChHH---HhcCC----CCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCH
Q 012212 341 PQEK---VLGHS----SVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITR 409 (468)
Q Consensus 341 p~~~---ll~~~----~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~ 409 (468)
|+.+ ++..+ ++ +|.- |-..++.||+++|+|+|+.. .......+... +.|+.++. -+.
T Consensus 344 ~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~----~~g~~e~v~~~-~~g~l~~~-----~d~ 411 (499)
T 2r60_A 344 SQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTR----NGGPAEILDGG-KYGVLVDP-----EDP 411 (499)
T ss_dssp SHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEES----SBHHHHHTGGG-TSSEEECT-----TCH
T ss_pred CHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEec----CCCHHHHhcCC-ceEEEeCC-----CCH
Confidence 8754 56555 55 7732 33468999999999999884 34555556553 57888876 468
Q ss_pred HHHHHHHHHHhcChHHHHHH
Q 012212 410 QEIQRKVLTLLKNDDIRSNS 429 (468)
Q Consensus 410 ~~l~~ai~~~l~~~~~r~~a 429 (468)
++++++|.++++|++.+++.
T Consensus 412 ~~la~~i~~ll~~~~~~~~~ 431 (499)
T 2r60_A 412 EDIARGLLKAFESEETWSAY 431 (499)
T ss_dssp HHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHH
Confidence 99999999999998755443
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.41 E-value=2e-12 Score=125.19 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=64.6
Q ss_pred CCCceEEcccCh---HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCcc
Q 012212 331 SNRGKIVEWAPQ---EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGII 407 (468)
Q Consensus 331 ~~nv~~~~~~p~---~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~ 407 (468)
.+++++.+++++ ..+++.+++ +|+..|..+ .||.++|+|+|+++-..+++.. .++ |.|+.++ .
T Consensus 281 ~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e~----v~~-g~~~lv~------~ 346 (403)
T 3ot5_A 281 HERIHLIEPLDAIDFHNFLRKSYL--VFTDSGGVQ-EEAPGMGVPVLVLRDTTERPEG----IEA-GTLKLIG------T 346 (403)
T ss_dssp CTTEEEECCCCHHHHHHHHHHEEE--EEECCHHHH-HHGGGTTCCEEECCSSCSCHHH----HHH-TSEEECC------S
T ss_pred CCCEEEeCCCCHHHHHHHHHhcCE--EEECCccHH-HHHHHhCCCEEEecCCCcchhh----eeC-CcEEEcC------C
Confidence 368999999874 457766655 998864322 6999999999999766665542 354 8887764 3
Q ss_pred CHHHHHHHHHHHhcChHHHHHHH
Q 012212 408 TRQEIQRKVLTLLKNDDIRSNSL 430 (468)
Q Consensus 408 t~~~l~~ai~~~l~~~~~r~~a~ 430 (468)
+.++|.++|.++|+|++.+++..
T Consensus 347 d~~~l~~ai~~ll~~~~~~~~m~ 369 (403)
T 3ot5_A 347 NKENLIKEALDLLDNKESHDKMA 369 (403)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHH
Confidence 68999999999999988766544
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.39 E-value=4.4e-12 Score=122.62 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=84.9
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCcccCCchhHHHH--hCCCceEEcccCh---
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFMNGSRAKFPDGFIER--VSNRGKIVEWAPQ--- 342 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~--- 342 (468)
++++|+++.+....... .+..+++++..+ +.++++.++.. ....+.+.+. ..+++++.+++++
T Consensus 229 ~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~~v~~~g~~------~~~~~~l~~~~~~~~~v~~~~~lg~~~~ 301 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQILYPVHLN------PNVREPVNKLLKGVSNIVLIEPQQYLPF 301 (396)
T ss_dssp TSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEEEEEECCBC------HHHHHHHHHHTTTCTTEEEECCCCHHHH
T ss_pred CCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCceEEEEeCCC------hHHHHHHHHHHcCCCCEEEeCCCCHHHH
Confidence 34577776533222222 256677766543 33444433321 0111222221 1468889888764
Q ss_pred HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 343 EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 343 ~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
..+++.+++ +|+-.| |.+.||.++|+|+|++.-..+++. +.+. |.++.++ .+.++|.++|.++|+|
T Consensus 302 ~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~e----~v~~-G~~~lv~------~d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 302 VYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERPE----AVAA-GTVKLVG------TNQQQICDALSLLLTD 367 (396)
T ss_dssp HHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCHH----HHHH-TSEEECT------TCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcchH----HHHc-CceEEcC------CCHHHHHHHHHHHHcC
Confidence 457766665 999987 656799999999999855555432 3454 8876553 3589999999999999
Q ss_pred hHHHHHHHH
Q 012212 423 DDIRSNSLK 431 (468)
Q Consensus 423 ~~~r~~a~~ 431 (468)
++.+++..+
T Consensus 368 ~~~~~~m~~ 376 (396)
T 3dzc_A 368 PQAYQAMSQ 376 (396)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 887665443
No 32
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.38 E-value=1.3e-10 Score=112.91 Aligned_cols=115 Identities=7% Similarity=0.089 Sum_probs=78.7
Q ss_pred CCCceEEcccChH---HHhcCCCCCceeec----cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeecc
Q 012212 331 SNRGKIVEWAPQE---KVLGHSSVACFISH----CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFAD 402 (468)
Q Consensus 331 ~~nv~~~~~~p~~---~ll~~~~~~~~I~h----GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~ 402 (468)
.+||++.+++|+. .++..+++ +|.- .|. +++.||+++|+|+|+.+. ......+.+. +.|+.++.
T Consensus 262 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~- 333 (406)
T 2gek_A 262 AGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADG-DAGRLVPV- 333 (406)
T ss_dssp GGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTT-TSSEECCT-
T ss_pred cCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCC-CceEEeCC-
Confidence 5788999999985 57766666 7643 344 589999999999999854 5566666663 67888765
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 403 ENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 403 ~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
-+.+++.++|.++++|++.+++..+-+ ++... .=+.....+++.+.+++..
T Consensus 334 ----~d~~~l~~~i~~l~~~~~~~~~~~~~~---~~~~~-~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 334 ----DDADGMAAALIGILEDDQLRAGYVARA---SERVH-RYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp ----TCHHHHHHHHHHHHHCHHHHHHHHHHH---HHHGG-GGBHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHHcCHHHHHHHHHHH---HHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 368999999999999988555433322 22222 2244555555655555544
No 33
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.36 E-value=9e-12 Score=120.26 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=84.8
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCcccCCchhHHHHh--CCCceEEcccCh---
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESL-----QKPFLWVIRQDFMNGSRAKFPDGFIERV--SNRGKIVEWAPQ--- 342 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p~--- 342 (468)
++++++++.|+..... +-+..+++++..+ +.++++..+.. ....+.+.+.. .++|++.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~------~~~~~~l~~~~~~~~~v~~~g~~~~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN------PNVREPVNRILGHVKNVILIDPQEYLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC------HHHHHHHHHHHTTCTTEEEECCCCHHHH
T ss_pred CCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC------HHHHHHHHHHhhcCCCEEEeCCCCHHHH
Confidence 3457888888754322 2344555555432 23343322211 01112222221 368898777775
Q ss_pred HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 343 EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 343 ~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
..++..+++ ||+.+| +.+.||+++|+|+|+.+..++... +.+. |.|+.++. +.++|.++|.++++|
T Consensus 277 ~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~~e----~v~~-g~g~lv~~------d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 277 VWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTERPE----AVTA-GTVRLVGT------DKQRIVEEVTRLLKD 342 (384)
T ss_dssp HHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCSCHH----HHHH-TSEEEECS------SHHHHHHHHHHHHHC
T ss_pred HHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCCcch----hhhC-CceEEeCC------CHHHHHHHHHHHHhC
Confidence 456766665 999885 348899999999999986444332 3454 88888753 589999999999999
Q ss_pred hHHHHHH
Q 012212 423 DDIRSNS 429 (468)
Q Consensus 423 ~~~r~~a 429 (468)
++.+++.
T Consensus 343 ~~~~~~~ 349 (384)
T 1vgv_A 343 ENEYQAM 349 (384)
T ss_dssp HHHHHHH
T ss_pred hHHHhhh
Confidence 8765543
No 34
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.36 E-value=3.1e-11 Score=116.00 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=83.3
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCcccCCchhHHHHhC--CCceEEcccChH---H
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESL---QKPFLWVIRQDFMNGSRAKFPDGFIERVS--NRGKIVEWAPQE---K 344 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~~p~~---~ 344 (468)
++++++++.|...... .-+..+++++..+ ..++.++++.+ ....+.+.+.+... ++|++.+++++. .
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~~~g----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 278 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVYPVH----MNPVVRETANDILGDYGRIHLIEPLDVIDFHN 278 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEEECC----SCHHHHHHHHHHHTTCTTEEEECCCCHHHHHH
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEEeCC----CCHHHHHHHHHHhhccCCEEEeCCCCHHHHHH
Confidence 3456777777653221 3345666666432 11333334332 00111112222223 689998888764 4
Q ss_pred HhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 345 VLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 345 ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
++..+++ +|+..| +.+.||+++|+|+|+....+.. .. +.+. |.|+.++. +.+++.++|.++++|++
T Consensus 279 ~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~---~e-~v~~-g~g~~v~~------d~~~la~~i~~ll~~~~ 344 (375)
T 3beo_A 279 VAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER---PE-GIEA-GTLKLAGT------DEETIFSLADELLSDKE 344 (375)
T ss_dssp HHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC---HH-HHHT-TSEEECCS------CHHHHHHHHHHHHHCHH
T ss_pred HHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC---ce-eecC-CceEEcCC------CHHHHHHHHHHHHhChH
Confidence 6755555 998873 5588999999999988543332 22 3454 88887752 58999999999999987
Q ss_pred HHHHH
Q 012212 425 IRSNS 429 (468)
Q Consensus 425 ~r~~a 429 (468)
.+++.
T Consensus 345 ~~~~~ 349 (375)
T 3beo_A 345 AHDKM 349 (375)
T ss_dssp HHHHH
T ss_pred hHhhh
Confidence 66543
No 35
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.32 E-value=2.3e-11 Score=115.42 Aligned_cols=152 Identities=12% Similarity=0.065 Sum_probs=93.0
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChH---HHhcCCCCCce
Q 012212 278 YVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQE---KVLGHSSVACF 354 (468)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~~ 354 (468)
++..|+.. +..-+..+++++..++.+++++-.+. ....+ ..+.++..+||++.+|+|+. .++..+++ +
T Consensus 165 i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~G~g~----~~~~l-~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv--~ 235 (342)
T 2iuy_A 165 LLFMGRVS--PHKGALEAAAFAHACGRRLVLAGPAW----EPEYF-DEITRRYGSTVEPIGEVGGERRLDLLASAHA--V 235 (342)
T ss_dssp EEEESCCC--GGGTHHHHHHHHHHHTCCEEEESCCC----CHHHH-HHHHHHHTTTEEECCCCCHHHHHHHHHHCSE--E
T ss_pred EEEEeccc--cccCHHHHHHHHHhcCcEEEEEeCcc----cHHHH-HHHHHHhCCCEEEeccCCHHHHHHHHHhCCE--E
Confidence 44457753 33445667777776666665543322 11111 11223335899999999986 57766666 6
Q ss_pred ee-------------ccC-chhHHHhhhcCCceeccccccchhhhHHHHHH--HhhceeEeeccCCCccCHHHHHHHHHH
Q 012212 355 IS-------------HCG-WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICE--AWKIGLQFFADENGIITRQEIQRKVLT 418 (468)
Q Consensus 355 I~-------------hGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~--~lG~g~~l~~~~~~~~t~~~l~~ai~~ 418 (468)
|. +-| ..++.||+++|+|+|+... ..+...+++ . +.|+.++. +.+++.++|.+
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~-~~g~~~~~------d~~~l~~~i~~ 304 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGE-VVGYGTDF------APDEARRTLAG 304 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEE-ECCSSSCC------CHHHHHHHHHT
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCC-CceEEcCC------CHHHHHHHHHH
Confidence 63 233 4789999999999999854 445665555 3 46665543 58999999999
Q ss_pred HhcChHHHHHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 419 LLKNDDIRSNSLKLK-EVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 419 ~l~~~~~r~~a~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
+++ .+++++.. +.+ +....++++++.+++..
T Consensus 305 l~~----~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 305 LPA----SDEVRRAAVRLW--------GHVTIAERYVEQYRRLL 336 (342)
T ss_dssp SCC----HHHHHHHHHHHH--------BHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhc--------CHHHHHHHHHHHHHHHH
Confidence 997 55555443 333 33445555555555444
No 36
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.31 E-value=1.3e-09 Score=105.45 Aligned_cols=351 Identities=9% Similarity=0.056 Sum_probs=176.0
Q ss_pred CEEEEEcCCCc-cChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 5 PHVLVIPYPAQ-GHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~-GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
.++....+|.. |.-.....||++|.++||+|++++...... .. ....++.+..++....... ......
T Consensus 16 ~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~--------~~~~~i~~~~~~~~~~~~~--~~~~~~ 84 (394)
T 2jjm_A 16 LKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFR-LN--------KVYPNIYFHEVTVNQYSVF--QYPPYD 84 (394)
T ss_dssp CEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------CCCTTEEEECCCCC----C--CSCCHH
T ss_pred eeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc-cc--------ccCCceEEEeccccccccc--cccccc
Confidence 56776666644 777888999999999999999999864321 11 1125666665553211110 001111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCccc--HHHHHHH-h--CCceEEEcccchHHHHHHhhhhhHhhc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGS--ALEVAES-M--GIARAAVVPFGPGSLALSLQFPKLLEA 158 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~--~~~~A~~-l--giP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (468)
+. ....+.++++. .+||+|++...... ...++.. + ++|+|......... ..
T Consensus 85 -~~-----~~~~l~~~l~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~------- 140 (394)
T 2jjm_A 85 -LA-----LASKMAEVAQR-------ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----VL------- 140 (394)
T ss_dssp -HH-----HHHHHHHHHHH-------HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----TT-------
T ss_pred -HH-----HHHHHHHHHHH-------cCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----cc-------
Confidence 11 11123344444 45999999754331 2334443 3 59988755432100 00
Q ss_pred CCCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhhcc--CC
Q 012212 159 GIIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPACDL--IP 236 (468)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~--~p 236 (468)
+. . . ....... ..+..+|.++..+....+.-.... ..
T Consensus 141 ~~--------------------~-------~--------~~~~~~~------~~~~~ad~ii~~s~~~~~~~~~~~~~~~ 179 (394)
T 2jjm_A 141 GS--------------------D-------P--------SLNNLIR------FGIEQSDVVTAVSHSLINETHELVKPNK 179 (394)
T ss_dssp TT--------------------C-------T--------TTHHHHH------HHHHHSSEEEESCHHHHHHHHHHTCCSS
T ss_pred CC--------------------C-------H--------HHHHHHH------HHHhhCCEEEECCHHHHHHHHHhhCCcc
Confidence 00 0 0 0001111 114467888888765544321111 23
Q ss_pred CceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEeccccc-CCHHHHHHHHHHHHh-CCCCEEEEEcCCC
Q 012212 237 NILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAV-LSQQQFAELALGLES-LQKPFLWVIRQDF 314 (468)
Q Consensus 237 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~a~~~-~~~~~l~~~~~~~ 314 (468)
++..+.......... ......+.+.+...++ ..+++..|+... -..+.+...+..+.+ .+.++ +.++.+
T Consensus 180 ~~~vi~ngv~~~~~~------~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l-~i~G~g- 250 (394)
T 2jjm_A 180 DIQTVYNFIDERVYF------KRDMTQLKKEYGISES-EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKL-LLVGDG- 250 (394)
T ss_dssp CEEECCCCCCTTTCC------CCCCHHHHHHTTCC----CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEE-EEECCC-
T ss_pred cEEEecCCccHHhcC------CcchHHHHHHcCCCCC-CeEEEEeeccccccCHHHHHHHHHHHHhhCCCEE-EEECCc-
Confidence 555554333221111 0011111122221122 245556677632 122233333333332 23333 344433
Q ss_pred CCCcccCCchhHHHHh-----CCCceEEcccCh-HHHhcCCCCCcee----eccCchhHHHhhhcCCceeccccccchhh
Q 012212 315 MNGSRAKFPDGFIERV-----SNRGKIVEWAPQ-EKVLGHSSVACFI----SHCGWNSTMEGLSMGVPFLCWPYFSDQYQ 384 (468)
Q Consensus 315 ~~~~~~~~~~~~~~~~-----~~nv~~~~~~p~-~~ll~~~~~~~~I----~hGG~~s~~eal~~GvP~v~~P~~~DQ~~ 384 (468)
...+.+.+.. .++|.+.++..+ ..++..+++ +| .-|..+++.||+++|+|+|+.+.. .
T Consensus 251 ------~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~----~ 318 (394)
T 2jjm_A 251 ------PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG----G 318 (394)
T ss_dssp ------TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT----T
T ss_pred ------hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC----C
Confidence 1222222221 467888887654 568866655 88 556678999999999999998642 3
Q ss_pred hHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHhhcc
Q 012212 385 NRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVAR-KSLLGGGSSFRNFESFISDIKMLIS 462 (468)
Q Consensus 385 na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 462 (468)
....+++. +.|+.++. -+.+++.++|.++++|++.+++..+-+.+.. + .=+....++++++.+++...
T Consensus 319 ~~e~v~~~-~~g~~~~~-----~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 319 IPEVIQHG-DTGYLCEV-----GDTTGVADQAIQLLKDEELHRNMGERARESVYE----QFRSEKIVSQYETIYYDVLR 387 (394)
T ss_dssp STTTCCBT-TTEEEECT-----TCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHTC-
T ss_pred hHHHhhcC-CceEEeCC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHh
Confidence 33344443 57877765 3689999999999999885544333322221 2 22445566666666665543
No 37
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.28 E-value=9.9e-10 Score=105.35 Aligned_cols=141 Identities=15% Similarity=0.242 Sum_probs=93.4
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCC----C-EEEEEcCCCCCCcccCCchhHHH---Hh--CCCceEEcccCh-H
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQK----P-FLWVIRQDFMNGSRAKFPDGFIE---RV--SNRGKIVEWAPQ-E 343 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~----~-~l~~~~~~~~~~~~~~~~~~~~~---~~--~~nv~~~~~~p~-~ 343 (468)
+.+++..|+.. +..-+..+++++..+.. + .++.++.+ . .+.+.+ +. .+||++.++..+ .
T Consensus 196 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g----~----~~~~~~~~~~~~~~~~v~~~g~~~~~~ 265 (374)
T 2iw1_A 196 QNLLLQVGSDF--GRKGVDRSIEALASLPESLRHNTLLFVVGQD----K----PRKFEALAEKLGVRSNVHFFSGRNDVS 265 (374)
T ss_dssp CEEEEEECSCT--TTTTHHHHHHHHHTSCHHHHHTEEEEEESSS----C----CHHHHHHHHHHTCGGGEEEESCCSCHH
T ss_pred CeEEEEeccch--hhcCHHHHHHHHHHhHhccCCceEEEEEcCC----C----HHHHHHHHHHcCCCCcEEECCCcccHH
Confidence 35666678753 23345566777766532 2 33344433 1 122222 22 478898888654 6
Q ss_pred HHhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHH
Q 012212 344 KVLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTL 419 (468)
Q Consensus 344 ~ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~ 419 (468)
.++..+++ +|. -|..+++.||+++|+|+|+... ..+...+++. +.|+.++.. -+.+++.++|.++
T Consensus 266 ~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~----~~~~~l~~~i~~l 334 (374)
T 2iw1_A 266 ELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADA-NCGTVIAEP----FSQEQLNEVLRKA 334 (374)
T ss_dssp HHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHH-TCEEEECSS----CCHHHHHHHHHHH
T ss_pred HHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccC-CceEEeCCC----CCHHHHHHHHHHH
Confidence 67866666 775 5667899999999999999754 4566777875 889988632 4799999999999
Q ss_pred hcChHHHHHHHHHHHHH
Q 012212 420 LKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 420 l~~~~~r~~a~~l~~~~ 436 (468)
++|++.+++..+-+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~ 351 (374)
T 2iw1_A 335 LTQSPLRMAWAENARHY 351 (374)
T ss_dssp HHCHHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHH
Confidence 99988665554444443
No 38
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.09 E-value=2.7e-08 Score=96.92 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=73.4
Q ss_pred CCCceEEcccC---h---HHHhcCCCCCceeecc----CchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 331 SNRGKIVEWAP---Q---EKVLGHSSVACFISHC----GWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 331 ~~nv~~~~~~p---~---~~ll~~~~~~~~I~hG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
.++|++.+|++ + ..++..+++ +|.-. ...++.||+++|+|+|+.+. ..+...++.. +.|+.++
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~-~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDG-ETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBT-TTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecC-CCeEEEC
Confidence 47899998876 2 346755655 77543 45789999999999999753 4556666553 6787775
Q ss_pred ccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 401 ADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKE-VARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
+.+++.++|.++++|++.+++..+-+. ...+ .=+....++++++.+++
T Consensus 365 -------d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~----~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK----NFIITKHMERYLDILNS 413 (416)
T ss_dssp -------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHHHH
Confidence 478999999999999886554333322 2222 11444555555555544
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.07 E-value=5.3e-10 Score=107.23 Aligned_cols=319 Identities=13% Similarity=0.065 Sum_probs=166.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH-HHHHhhhhhccCCCCCeEEEEcCC-CCCCCcCCCCCH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK-KIIASLQEKAEDSSSQIKLVTIPD-GLELQAADREDP 81 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 81 (468)
|.|++++ .+++-.+.-+.+|.++|.++ ++..++.++...+ .+..-. . .++.+. -|+ .+.. ...+.
T Consensus 9 ~~~~~~v-~GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~---~----~~~~i~-~~~~~l~~---~~~~~ 75 (385)
T 4hwg_A 9 MLKVMTI-VGTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVF---F----DDMGIR-KPDYFLEV---AADNT 75 (385)
T ss_dssp CCEEEEE-ECSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHH---H----C-CCCC-CCSEECCC---CCCCS
T ss_pred hhheeEE-EEcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHH---H----hhCCCC-CCceecCC---CCCCH
Confidence 5666655 47778888999999999887 9988888776544 221110 0 222210 111 0111 11122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec--CCcccHHHHHHHhCCceEEEcccchHHHHHHhhhhhHhhcC
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD--VTVGSALEVAESMGIARAAVVPFGPGSLALSLQFPKLLEAG 159 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D--~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 159 (468)
...... ....+.+++++ .+||+|++- ....++..+|..+|||++.+.. +
T Consensus 76 ---~~~~~~-~~~~l~~~l~~-------~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~ea------------------g 126 (385)
T 4hwg_A 76 ---AKSIGL-VIEKVDEVLEK-------EKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEA------------------G 126 (385)
T ss_dssp ---HHHHHH-HHHHHHHHHHH-------HCCSEEEEESCSGGGGGHHHHHHTTCCEEEESC------------------C
T ss_pred ---HHHHHH-HHHHHHHHHHh-------cCCcEEEEECCchHHHHHHHHHHhCCCEEEEeC------------------C
Confidence 222222 22335666666 569998873 3333447899999999765432 1
Q ss_pred CCCCCCcccccCCcccccCCCccCcccccCcCCCCCChhHHHHHHHHHHHHHhhccccEEEEcCcccCChhhh-ccC-CC
Q 012212 160 IIDPNGFAILNDGLISLSDEIPAWKRNEYTWSFPDEPSEQKILLGIICAVIQAVKISNWIINNSVYELDSPAC-DLI-PN 237 (468)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~-~~~-p~ 237 (468)
... +.. ..+ ....+.... .-++.++..+...-+.... -.. .+
T Consensus 127 lrs--------------------~~~-~~p------ee~nR~~~~---------~~a~~~~~~te~~~~~l~~~G~~~~~ 170 (385)
T 4hwg_A 127 NRC--------------------FDQ-RVP------EEINRKIID---------HISDVNITLTEHARRYLIAEGLPAEL 170 (385)
T ss_dssp CCC--------------------SCT-TST------HHHHHHHHH---------HHCSEEEESSHHHHHHHHHTTCCGGG
T ss_pred Ccc--------------------ccc-cCc------HHHHHHHHH---------hhhceeecCCHHHHHHHHHcCCCcCc
Confidence 000 000 000 000111111 1245666665543222111 111 36
Q ss_pred ceeeccccCCCCCCCCCCCCCCCCCchhhhhhcccCccEEEEEecccccCC-HHHHHHHHHHHHhC----CCCEEEEEcC
Q 012212 238 ILPIGPLLASNHSGDLDGNFWSEDSSCLSWLDEQAIRSVVYVAFGSVAVLS-QQQFAELALGLESL----QKPFLWVIRQ 312 (468)
Q Consensus 238 v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~-~~~~~~~~~a~~~~----~~~~l~~~~~ 312 (468)
++.+|....+..... .. .....++.+.+.-. ++++++++.|...... .+.+..+++++.++ +..+++....
T Consensus 171 I~vtGnp~~D~~~~~--~~-~~~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p 246 (385)
T 4hwg_A 171 TFKSGSHMPEVLDRF--MP-KILKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHP 246 (385)
T ss_dssp EEECCCSHHHHHHHH--HH-HHHHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECH
T ss_pred EEEECCchHHHHHHh--hh-hcchhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 777884222110000 00 00011222333322 2458888887653222 24566777776543 4455554321
Q ss_pred CCCCCcccCCchhHHHH---h--CCCceEEcccCh---HHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhh
Q 012212 313 DFMNGSRAKFPDGFIER---V--SNRGKIVEWAPQ---EKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQ 384 (468)
Q Consensus 313 ~~~~~~~~~~~~~~~~~---~--~~nv~~~~~~p~---~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~ 384 (468)
. ..+.+.+. . .+|+++.+.+++ ..+++++++ +|+-.|. .+.||.+.|+|+|+++...+.+.
T Consensus 247 ~--------~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~e 315 (385)
T 4hwg_A 247 R--------TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERPE 315 (385)
T ss_dssp H--------HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCTH
T ss_pred H--------HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccchh
Confidence 1 11111111 1 357888766655 467866766 9998776 46899999999999987554222
Q ss_pred hHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 385 NRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 385 na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
. .++ |.++.++ .+.++|.+++.++|+|+..+
T Consensus 316 ---~-v~~-G~~~lv~------~d~~~i~~ai~~ll~d~~~~ 346 (385)
T 4hwg_A 316 ---G-MDA-GTLIMSG------FKAERVLQAVKTITEEHDNN 346 (385)
T ss_dssp ---H-HHH-TCCEECC------SSHHHHHHHHHHHHTTCBTT
T ss_pred ---h-hhc-CceEEcC------CCHHHHHHHHHHHHhChHHH
Confidence 2 354 8877664 46899999999999987744
No 40
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.96 E-value=8.5e-08 Score=99.72 Aligned_cols=113 Identities=7% Similarity=0.012 Sum_probs=71.3
Q ss_pred CCCceEEcc----cChHHHhc----CCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeE
Q 012212 331 SNRGKIVEW----APQEKVLG----HSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQ 398 (468)
Q Consensus 331 ~~nv~~~~~----~p~~~ll~----~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~ 398 (468)
.++|++.++ +|+.++.. .+++ +|.- |-..++.||+++|+|+|+. |.......+... +.|+.
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg-~~Gll 711 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHG-KSGFH 711 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBT-TTBEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccC-CcEEE
Confidence 478888874 44455443 2334 7742 3457999999999999997 555566666663 67888
Q ss_pred eeccCCCccCHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 399 FFADENGIITRQEIQRKVLTLL----KNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 399 l~~~~~~~~t~~~l~~ai~~~l----~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
++. -+.++++++|.+++ .|++.+++..+-+.+... +.=+-...++++++..+
T Consensus 712 v~p-----~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~---~~fSwe~~a~~ll~lY~ 767 (816)
T 3s28_A 712 IDP-----YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIE---EKYTWQIYSQRLLTLTG 767 (816)
T ss_dssp ECT-----TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH---HSCCHHHHHHHHHHHHH
T ss_pred eCC-----CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHH
Confidence 876 46899999997766 788765554443333221 12234455555554443
No 41
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.86 E-value=2.6e-07 Score=91.83 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=74.1
Q ss_pred CCCce-EEcccChH---HHhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHh---------
Q 012212 331 SNRGK-IVEWAPQE---KVLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAW--------- 393 (468)
Q Consensus 331 ~~nv~-~~~~~p~~---~ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~l--------- 393 (468)
++++. +.++ +.+ .++..+++ +|. -|-..++.||+++|+|+|+... ......+.+ -
T Consensus 345 ~~~v~~~~g~-~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~~-~~~~~~~~~~ 416 (485)
T 1rzu_A 345 HGRVGVAIGY-NEPLSHLMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVID-ANHAALASKA 416 (485)
T ss_dssp TTTEEEEESC-CHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCB-CCHHHHHTTC
T ss_pred CCcEEEecCC-CHHHHHHHHhcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheecc-cccccccccC
Confidence 57887 4588 543 46766655 773 3445789999999999999753 344444443 1
Q ss_pred hceeEeeccCCCccCHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcccC
Q 012212 394 KIGLQFFADENGIITRQEIQRKVLTLL---KNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLISGC 464 (468)
Q Consensus 394 G~g~~l~~~~~~~~t~~~l~~ai~~~l---~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 464 (468)
+.|+.++. -+.++++++|.+++ +|++.+++..+-+ +. +.=+-...++++++.+++.....
T Consensus 417 ~~G~l~~~-----~d~~~la~~i~~ll~~~~~~~~~~~~~~~~---~~---~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 417 ATGVQFSP-----VTLDGLKQAIRRTVRYYHDPKLWTQMQKLG---MK---SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp CCBEEESS-----CSHHHHHHHHHHHHHHHTCHHHHHHHHHHH---HT---CCCBHHHHHHHHHHHHHHHTC--
T ss_pred CcceEeCC-----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHH---HH---HhCChHHHHHHHHHHHHHhhCCC
Confidence 36777765 46899999999999 7887655443322 22 23344566666666666655443
No 42
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.86 E-value=6.2e-07 Score=89.10 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=75.1
Q ss_pred CCCce-EEcccChH---HHhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHh---------
Q 012212 331 SNRGK-IVEWAPQE---KVLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAW--------- 393 (468)
Q Consensus 331 ~~nv~-~~~~~p~~---~ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~l--------- 393 (468)
.+++. +.++ +.+ .++..+++ +|. -|...++.||+++|+|+|+... ......+.. -
T Consensus 346 ~~~v~~~~g~-~~~~~~~~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~~-~~~~~~~~~~ 417 (485)
T 2qzs_A 346 PGQVGVQIGY-HEAFSHRIMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVSD-CSLENLADGV 417 (485)
T ss_dssp TTTEEEEESC-CHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCB-CCHHHHHTTC
T ss_pred CCcEEEeCCC-CHHHHHHHHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceecc-Cccccccccc
Confidence 46886 5588 543 46766665 773 2445689999999999999843 344444443 1
Q ss_pred hceeEeeccCCCccCHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcccCCC
Q 012212 394 KIGLQFFADENGIITRQEIQRKVLTLL---KNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLISGCDS 466 (468)
Q Consensus 394 G~g~~l~~~~~~~~t~~~l~~ai~~~l---~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (468)
+.|+.++. -+.++++++|.+++ +|++.+++..+-+ +. +.=+-...++++++.+++....+.+
T Consensus 418 ~~G~l~~~-----~d~~~la~~i~~ll~~~~~~~~~~~~~~~~---~~---~~fs~~~~~~~~~~ly~~~~~~~~~ 482 (485)
T 2qzs_A 418 ASGFVFED-----SNAWSLLRAIRRAFVLWSRPSLWRFVQRQA---MA---MDFSWQVAAKSYRELYYRLKLEHHH 482 (485)
T ss_dssp CCBEEECS-----SSHHHHHHHHHHHHHHHTSHHHHHHHHHHH---HH---CCCCHHHHHHHHHHHHHHHC-----
T ss_pred cceEEECC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH---Hh---hcCCHHHHHHHHHHHHHHhhhhhcc
Confidence 36777765 46899999999999 7887665443332 22 2335567777777777777666554
No 43
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=4.2e-05 Score=77.46 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=73.9
Q ss_pred CCceEEcccChH---HHhcCCCCCceee---ccCchhHHHhhhcCCceeccccccchhh-hHHHHHHHhhceeEeeccCC
Q 012212 332 NRGKIVEWAPQE---KVLGHSSVACFIS---HCGWNSTMEGLSMGVPFLCWPYFSDQYQ-NRNYICEAWKIGLQFFADEN 404 (468)
Q Consensus 332 ~nv~~~~~~p~~---~ll~~~~~~~~I~---hGG~~s~~eal~~GvP~v~~P~~~DQ~~-na~rv~~~lG~g~~l~~~~~ 404 (468)
++|++.+++|+. .++..+++ ||. .|+..++.||+++|+|+|++|-..=..+ .+..+.. .|+...+..
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~-~g~~e~v~~--- 507 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHH-LGLDEMNVA--- 507 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHH-HTCGGGBCS---
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHH-CCChhhhcC---
Confidence 788999999864 45655655 762 3667899999999999999763211111 2344555 376655532
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 405 GIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
+.+++.++|.++++|++.+++..+-+.+.... .+.-+....++++.+.+++.
T Consensus 508 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~y~~~ 559 (568)
T 2vsy_A 508 ---DDAAFVAKAVALASDPAALTALHARVDVLRRA-SGVFHMDGFADDFGALLQAL 559 (568)
T ss_dssp ---SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SSTTCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999998666544333222200 12334445555555444433
No 44
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.62 E-value=9.1e-08 Score=81.20 Aligned_cols=139 Identities=9% Similarity=0.112 Sum_probs=91.0
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHH---HHhCCCceEEcccCh---HHHhcCC
Q 012212 277 VYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFI---ERVSNRGKIVEWAPQ---EKVLGHS 349 (468)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~p~---~~ll~~~ 349 (468)
+++..|+.. ...-+..+++++..+ +.+++++-.+. ....+..-.. ...++|+++.+|+|+ ..++..+
T Consensus 25 ~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~G~~~----~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 25 FWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIVGWFS----KGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEEBCCC----TTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred EEEEEeccc--cccCHHHHHHHHHhCCCcEEEEEecCc----cHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 444567753 234466777888776 44555543322 1111111111 123569999999998 5577666
Q ss_pred CCCceee---ccCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 350 SVACFIS---HCGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 350 ~~~~~I~---hGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
++ +|. +.|. .++.||+++|+|+|+.. ...+...+++. +.|+.+ . -+.+++.++|.++++|++.
T Consensus 99 di--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~e~i~~~-~~g~~~-~-----~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 99 KG--LLCTAKDEDFGLTPIEAMASGKPVIAVN----EGGFKETVINE-KTGYLV-N-----ADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp SE--EEECCSSCCSCHHHHHHHHTTCCEEEES----SHHHHHHCCBT-TTEEEE-C-----SCHHHHHHHHHHHHHCTTT
T ss_pred CE--EEeCCCcCCCChHHHHHHHcCCcEEEeC----CCCHHHHhcCC-CccEEe-C-----CCHHHHHHHHHHHHhCHHH
Confidence 66 776 3344 59999999999999974 45566666653 678887 3 5799999999999998885
Q ss_pred -HHHHHHHHH
Q 012212 426 -RSNSLKLKE 434 (468)
Q Consensus 426 -r~~a~~l~~ 434 (468)
++++++.++
T Consensus 166 ~~~~~~~~a~ 175 (177)
T 2f9f_A 166 FKKDCFRRAK 175 (177)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 666666554
No 45
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.59 E-value=3.3e-06 Score=81.87 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=70.4
Q ss_pred ceEEcccChHH---HhcCCCCCceee----ccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhc-----------
Q 012212 334 GKIVEWAPQEK---VLGHSSVACFIS----HCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKI----------- 395 (468)
Q Consensus 334 v~~~~~~p~~~---ll~~~~~~~~I~----hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~----------- 395 (468)
+.+.+|+|+.+ ++..+++ +|. -|...++.||+++|+|+|+.. -......+.+ |.
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~----~~g~~e~v~~--~~~~~i~~~~~~~ 327 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISA----VGGADDYFSG--DCVYKIKPSAWIS 327 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEEC----CHHHHHHSCT--TTSEEECCCEEEE
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcC----CCChHHHHcc--Ccccccccccccc
Confidence 55559999644 6656655 773 344568999999999999874 3444444443 33
Q ss_pred -----ee--EeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 396 -----GL--QFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 396 -----g~--~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
|+ .++. -+.++++++| ++++|++.+++..+-+.+... +.=+-...++++.+.+++..
T Consensus 328 ~~~~~G~~gl~~~-----~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~---~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 328 VDDRDGIGGIEGI-----IDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVK---TKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp CTTTCSSCCEEEE-----CCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHT---TSCCHHHHHHHHHHHHHHHT
T ss_pred cccccCcceeeCC-----CCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHH
Confidence 55 5554 4799999999 999998866544443333321 23244555555555555443
No 46
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.56 E-value=7.3e-06 Score=79.27 Aligned_cols=76 Identities=8% Similarity=0.025 Sum_probs=57.9
Q ss_pred CCCceEEcccChHH---HhcCCCCCceee---ccC-chhHHHhh-------hcCCceeccccccchhhhHHHHHHHhhce
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFIS---HCG-WNSTMEGL-------SMGVPFLCWPYFSDQYQNRNYICEAWKIG 396 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---hGG-~~s~~eal-------~~GvP~v~~P~~~DQ~~na~rv~~~lG~g 396 (468)
.+||++.+++|+.+ ++..+++ +|. +.| .+++.||+ ++|+|+|+... +... ..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~-~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGP-YKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCS-CSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccC-cce
Confidence 57889999999754 5656655 663 334 46789999 99999999854 4443 568
Q ss_pred eE-eeccCCCccCHHHHHHHHHHHhcChH
Q 012212 397 LQ-FFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 397 ~~-l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
+. ++. -+.++++++|.++++|++
T Consensus 331 ~l~v~~-----~d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 331 RFGYTP-----GNADSVIAAITQALEAPR 354 (406)
T ss_dssp EEEECT-----TCHHHHHHHHHHHHHCCC
T ss_pred EEEeCC-----CCHHHHHHHHHHHHhCcc
Confidence 77 665 368999999999999886
No 47
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.51 E-value=1.9e-05 Score=75.47 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=62.1
Q ss_pred CceEEcccCh-HHHhcCCCCCceee---c--cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCc
Q 012212 333 RGKIVEWAPQ-EKVLGHSSVACFIS---H--CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGI 406 (468)
Q Consensus 333 nv~~~~~~p~-~~ll~~~~~~~~I~---h--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~ 406 (468)
++.+.++..+ ..+++.+++ ++. . +|..++.||+++|+|+|+-|...+..+....+.+. |.++..
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~------- 330 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEV------- 330 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEEC-------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHC-CCEEEe-------
Confidence 4555565543 557755554 554 1 24478999999999999877766666666655554 766554
Q ss_pred cCHHHHHHHHHHHhcChH----HHHHHHHHHHH
Q 012212 407 ITRQEIQRKVLTLLKNDD----IRSNSLKLKEV 435 (468)
Q Consensus 407 ~t~~~l~~ai~~~l~~~~----~r~~a~~l~~~ 435 (468)
-+.+++.++|.++|+| + +.+++++..+.
T Consensus 331 ~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 331 KNETELVTKLTELLSV-KKEIKVEEKSREIKGC 362 (374)
T ss_dssp CSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 2579999999999998 6 44455544433
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.08 E-value=9.6e-05 Score=76.57 Aligned_cols=171 Identities=13% Similarity=0.054 Sum_probs=108.8
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh------CCCceEEcccChHHHh
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV------SNRGKIVEWAPQEKVL 346 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~nv~~~~~~p~~~ll 346 (468)
++.+||.+|.+.....++.+....+-|.+.+.-++|...... ....++.+.. ++++++.+..|..+-|
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~------~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l 594 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA------VGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHV 594 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG------GGHHHHHHHHHHTTCCGGGEEEEECCCHHHHH
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH------HHHHHHHHHHHhcCCCcCeEEECCCCCHHHHH
Confidence 345999999998889999999999999999998888876541 1112222211 4677888989876544
Q ss_pred c-CCCCCceee---ccCchhHHHhhhcCCceecccc-ccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 347 G-HSSVACFIS---HCGWNSTMEGLSMGVPFLCWPY-FSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 347 ~-~~~~~~~I~---hGG~~s~~eal~~GvP~v~~P~-~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
. +..+|+++- .+|.+|+.|||++|||+|+++= ..=-+.-+..+.. +|+.-.+-.+ ..+-+..|| ++-+
T Consensus 595 ~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~-~gl~e~ia~~-----~~~Y~~~a~-~la~ 667 (723)
T 4gyw_A 595 RRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTC-LGCLELIAKN-----RQEYEDIAV-KLGT 667 (723)
T ss_dssp HHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHH-HTCGGGBCSS-----HHHHHHHHH-HHHH
T ss_pred HHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHH-cCCcccccCC-----HHHHHHHHH-HHhc
Confidence 2 344555764 8889999999999999999983 2233344445555 4776555432 244455555 6767
Q ss_pred ChHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 422 NDDIRSNSL-KLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 422 ~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
|++.++..+ +|.+++.++ .--.......+|-+.++
T Consensus 668 d~~~l~~lr~~l~~~~~~s--~l~d~~~~~~~le~a~~ 703 (723)
T 4gyw_A 668 DLEYLKKVRGKVWKQRISS--PLFNTKQYTMELERLYL 703 (723)
T ss_dssp CHHHHHHHHHHHHHHHHHS--STTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC--cCcCHHHHHHHHHHHHH
Confidence 877555543 455555442 11233344444444444
No 49
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.88 E-value=0.00057 Score=64.34 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeE-EEEcCCCCCCCcCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIK-LVTIPDGLELQAADRE 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 79 (468)
..+|||++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. +.++ ++.++..
T Consensus 7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~--------- 68 (349)
T 3tov_A 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN---------PNIDELIVVDKK--------- 68 (349)
T ss_dssp TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC---------TTCSEEEEECCS---------
T ss_pred CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC---------CCccEEEEeCcc---------
Confidence 45899999999999999999999999988 9999999999887776542 4454 4544421
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCc-eEEEecCCcccHHHHHHHhCCceEE
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPI-RCVIADVTVGSALEVAESMGIARAA 137 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~p-Dlvi~D~~~~~~~~~A~~lgiP~v~ 137 (468)
.... .+ ..+.++++.++. .++ |++|.=....-...++...|+|..+
T Consensus 69 ~~~~---~~-----~~~~~l~~~Lr~----~~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 69 GRHN---SI-----SGLNEVAREINA----KGKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp SHHH---HH-----HHHHHHHHHHHH----HCCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred cccc---cH-----HHHHHHHHHHhh----CCCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 1111 11 112344555555 359 9998644444556688888999755
No 50
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.83 E-value=0.00025 Score=60.78 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=62.9
Q ss_pred CceE-EcccChH---HHhcCCCCCceeec----cCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCC
Q 012212 333 RGKI-VEWAPQE---KVLGHSSVACFISH----CGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADEN 404 (468)
Q Consensus 333 nv~~-~~~~p~~---~ll~~~~~~~~I~h----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~ 404 (468)
++++ .+++|+. .++..+++ +|.- |...++.||+++|+|+|+.. -......+ .. +.|+.++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~~-~~-~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASA----VGGLRDII-TN-ETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEES----CHHHHHHC-CT-TTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeC----CCChHHHc-CC-CceEEecC---
Confidence 8999 8999854 46766655 7743 23478999999999999874 34455555 53 67888865
Q ss_pred CccCHHHHHHHHHHHhc-ChHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLK-NDDIRSNSL 430 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~-~~~~r~~a~ 430 (468)
-+.+++.++|.++++ |++.+++..
T Consensus 165 --~~~~~l~~~i~~l~~~~~~~~~~~~ 189 (200)
T 2bfw_A 165 --GDPGELANAILKALELSRSDLSKFR 189 (200)
T ss_dssp --TCHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 469999999999999 988554433
No 51
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.82 E-value=0.00023 Score=70.84 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=92.0
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE--cCCCCCCcccCCchhHHH-----HhCCCceEEcccChHHHh
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVI--RQDFMNGSRAKFPDGFIE-----RVSNRGKIVEWAPQEKVL 346 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~p~~~ll 346 (468)
+.++|.++++.....++.++...+-+.+.+..++|.. +.. ......+.+ -+.+++++.+.+|+.+.+
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~------~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~l 513 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQS------NGITHPYVERFIKSYLGDSATAHPHSPYHQYL 513 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSC------CGGGHHHHHHHHHHHHGGGEEEECCCCHHHHH
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCC------chhhHHHHHHHHHcCCCccEEEcCCCCHHHHH
Confidence 3589999998888889999999988888887777643 311 011111111 135678888999976644
Q ss_pred ---cCCCCCcee---eccCchhHHHhhhcCCceeccccc-cchhhhHHHHHHHhhceeE-eeccCCCccCHHHHHHHHHH
Q 012212 347 ---GHSSVACFI---SHCGWNSTMEGLSMGVPFLCWPYF-SDQYQNRNYICEAWKIGLQ-FFADENGIITRQEIQRKVLT 418 (468)
Q Consensus 347 ---~~~~~~~~I---~hGG~~s~~eal~~GvP~v~~P~~-~DQ~~na~rv~~~lG~g~~-l~~~~~~~~t~~~l~~ai~~ 418 (468)
..+++ ++ ..+|.+|+.||+++|||+|+++-. .--..-+..+.. +|+.-. +. -+.++..+...+
T Consensus 514 a~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~-~GLpE~LIA------~d~eeYv~~Av~ 584 (631)
T 3q3e_A 514 RILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKR-LGLPEWLIA------NTVDEYVERAVR 584 (631)
T ss_dssp HHHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHH-TTCCGGGEE------SSHHHHHHHHHH
T ss_pred HHHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHh-cCCCcceec------CCHHHHHHHHHH
Confidence 44444 54 347889999999999999998632 111222222334 365432 32 357777777779
Q ss_pred HhcChHHHHHHH
Q 012212 419 LLKNDDIRSNSL 430 (468)
Q Consensus 419 ~l~~~~~r~~a~ 430 (468)
+.+|++.+++.+
T Consensus 585 La~D~~~l~~LR 596 (631)
T 3q3e_A 585 LAENHQERLELR 596 (631)
T ss_dssp HHHCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 999998665543
No 52
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.73 E-value=0.00014 Score=60.26 Aligned_cols=134 Identities=10% Similarity=0.218 Sum_probs=78.4
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCcccCCchhHH---HHhCCCceEEcccChHH---Hh
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQ--KPFLWVIRQDFMNGSRAKFPDGFI---ERVSNRGKIVEWAPQEK---VL 346 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~p~~~---ll 346 (468)
+++++..|+.. ...-+..+++++..+. .++.+.+-+. ....+.+. ++...++++ +|+|+.+ ++
T Consensus 2 ~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~~~l~i~G~------g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~ 72 (166)
T 3qhp_A 2 PFKIAMVGRYS--NEKNQSVLIKAVALSKYKQDIVLLLKGK------GPDEKKIKLLAQKLGVKAEF-GFVNSNELLEIL 72 (166)
T ss_dssp CEEEEEESCCS--TTTTHHHHHHHHHTCTTGGGEEEEEECC------STTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHH
T ss_pred ceEEEEEeccc--hhcCHHHHHHHHHHhccCCCeEEEEEeC------CccHHHHHHHHHHcCCeEEE-eecCHHHHHHHH
Confidence 35677778763 2344566777776653 2333333332 01122222 223447777 9999754 66
Q ss_pred cCCCCCceee----ccCchhHHHhhhcCC-ceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 347 GHSSVACFIS----HCGWNSTMEGLSMGV-PFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 347 ~~~~~~~~I~----hGG~~s~~eal~~Gv-P~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
..+++ +|. -|...++.||+++|+ |+|+....+ .....+... +. .++. -+.+++.++|.++++
T Consensus 73 ~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~~~-~~--~~~~-----~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 73 KTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFALDE-RS--LFEP-----NNAKDLSAKIDWWLE 139 (166)
T ss_dssp TTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCSSG-GG--EECT-----TCHHHHHHHHHHHHH
T ss_pred HhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhccCC-ce--EEcC-----CCHHHHHHHHHHHHh
Confidence 55555 775 344579999999996 999943211 111222221 33 3333 479999999999999
Q ss_pred ChHHHHHHH
Q 012212 422 NDDIRSNSL 430 (468)
Q Consensus 422 ~~~~r~~a~ 430 (468)
|++.+++..
T Consensus 140 ~~~~~~~~~ 148 (166)
T 3qhp_A 140 NKLERERMQ 148 (166)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988554443
No 53
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.44 E-value=0.0075 Score=56.55 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=67.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCe-EEEEcCCCCCCCcCCCCCH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQI-KLVTIPDGLELQAADREDP 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~ 81 (468)
||||++...+.|++.-..++.++|+++ +.+|++++.+.+.+.+... +.+ +++.++.. . ....
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~---------p~i~~v~~~~~~--~---~~~~- 65 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPLG--H---GALE- 65 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC---------TTEEEEEEC------------C-
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC---------CccCEEEEecCC--c---cccc-
Confidence 589999988889999999999999987 9999999998777655331 345 34444310 0 0000
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc-ccHHHHHHHhCCceEE
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV-GSALEVAESMGIARAA 137 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~-~~~~~~A~~lgiP~v~ 137 (468)
...+.++.+.++. .+||++| |... .-...++...|+|..+
T Consensus 66 -----------~~~~~~l~~~l~~----~~~D~vi-d~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 66 -----------IGERRKLGHSLRE----KRYDRAY-VLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp -----------HHHHHHHHHHTTT----TTCSEEE-ECSCCSGGGHHHHHTTCSEEE
T ss_pred -----------hHHHHHHHHHHHh----cCCCEEE-ECCCChHHHHHHHHhCCCEEe
Confidence 0123455566655 5699998 4332 3455678888999743
No 54
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.17 E-value=0.00057 Score=63.86 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=76.8
Q ss_pred CceEEcccChHHHh---cCCCCCceeeccC---------chhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEee
Q 012212 333 RGKIVEWAPQEKVL---GHSSVACFISHCG---------WNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 333 nv~~~~~~p~~~ll---~~~~~~~~I~hGG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
||.+.+|+|+.++. ..++..++..-+. .+-+.|++++|+|+|+. +...++..+++. |+|+.++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~----~~~~~~~~v~~~-~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQ----EGIANQELIENN-GLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEE----TTCTTTHHHHHH-TCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEc----cChhHHHHHHhC-CeEEEeC
Confidence 88999999997754 3344443432332 23578999999999975 466788889997 9999884
Q ss_pred ccCCCccCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 012212 401 ADENGIITRQEIQRKVLTLLKND--DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDI 457 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~--~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (468)
+.+++.+++.++..+. ++++|+++.+++++. +-...+++.+.+..+
T Consensus 290 -------~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~----~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNEDEYIELVKNVRSFNPILRK----GFFTRRLLTESVFQA 337 (339)
T ss_dssp -------SHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHT----THHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHh
Confidence 3678888888865332 277888888888776 545555655555443
No 55
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.66 E-value=0.025 Score=52.36 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=40.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~ 49 (468)
||||++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.+..
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSW 47 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHT
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhc
Confidence 589999999999999999999999988 899999999988777654
No 56
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=95.97 E-value=0.0032 Score=60.73 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=57.3
Q ss_pred CCCceEEcccChHH---HhcCCCCCceeecc---Cc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC
Q 012212 331 SNRGKIVEWAPQEK---VLGHSSVACFISHC---GW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE 403 (468)
Q Consensus 331 ~~nv~~~~~~p~~~---ll~~~~~~~~I~hG---G~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~ 403 (468)
.++|++.+++|+.+ +++.+++ ||.-. |. .++.||+++|+|+|+- ..+ ....++.. ..|+.++.
T Consensus 294 ~~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g----~~e~v~~~-~~G~lv~~-- 363 (413)
T 2x0d_A 294 GIHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVITN-KYE----NKDLSNWH-SNIVSLEQ-- 363 (413)
T ss_dssp TEEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEEE-CBT----TBCGGGTB-TTEEEESS--
T ss_pred cCcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEEe-CCC----cchhhhcC-CCEEEeCC--
Confidence 45788889998765 5655655 77422 33 5789999999999973 221 12233442 46877766
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHH
Q 012212 404 NGIITRQEIQRKVLTLLKNDDIRSN 428 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~~~r~~ 428 (468)
-+.++++++|.++++|++.+++
T Consensus 364 ---~d~~~la~ai~~ll~~~~~~~~ 385 (413)
T 2x0d_A 364 ---LNPENIAETLVELCMSFNNRDV 385 (413)
T ss_dssp ---CSHHHHHHHHHHHHHHTC----
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHH
Confidence 4689999999999998887765
No 57
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=93.73 E-value=0.77 Score=45.55 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=72.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHH---HhcCCC
Q 012212 277 VYVAFGSVAVLSQQQFAELALGLE---SLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEK---VLGHSS 350 (468)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---ll~~~~ 350 (468)
+++..|... +.+-+..+++++. +.+.+++++..+.. .....-.......+.++.+....+... +++.++
T Consensus 329 ~i~~vgRl~--~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 403 (536)
T 3vue_A 329 LIAFIGRLE--EQKGPDVMAAAIPELMQEDVQIVLLGTGKK---KFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGAD 403 (536)
T ss_dssp EEEEECCBS--GGGCHHHHHHHHHHHTTSSCEEEEECCBCH---HHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCS
T ss_pred EEEEEeecc--ccCChHHHHHHHHHhHhhCCeEEEEeccCc---hHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhh
Confidence 444467763 2233444555554 34555555544330 000000112233477888887776643 565555
Q ss_pred CCceeec---cCc-hhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC-CC----ccCHHHHHHHHHHHhc
Q 012212 351 VACFISH---CGW-NSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE-NG----IITRQEIQRKVLTLLK 421 (468)
Q Consensus 351 ~~~~I~h---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~-~~----~~t~~~l~~ai~~~l~ 421 (468)
+ ||.- =|. .+++||+++|+|+|+.. .......|.+. .-|....... ++ ..+.+.|.++|+++|+
T Consensus 404 ~--~v~PS~~E~fgl~~lEAma~G~PvI~s~----~gG~~e~V~dg-~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 404 V--LAVPSRFEPCGLIQLQGMRYGTPCACAS----TGGLVDTVIEG-KTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp E--EEECCSCCSSCSHHHHHHHTTCCEEECS----CTHHHHHCCBT-TTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred e--eecccccCCCCHHHHHHHHcCCCEEEcC----CCCchheeeCC-CCccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 5 7753 233 58999999999999874 44455555542 3454333211 11 0357889999988774
No 58
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=92.16 E-value=0.55 Score=41.00 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLK 83 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (468)
|||||+.-==|. |---+..|+++|.+.| +|+++.+...+....... .....+++..+..+.. .. ....+.+
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-----t~~~pl~~~~~~~~~~-~~-v~GTPaD 71 (251)
T 2phj_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL-----TFTEPLKMRKIDTDFY-TV-IDGTPAD 71 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC-----CCSSCEEEEEEETTEE-EE-TTCCHHH
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCccce-----ecCCCeEEEEecCCCe-EE-ECCCHHH
Confidence 478888753333 4445788999999988 999999987665443321 2224566655543311 00 1222222
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEe----------cCCcccHH---HHHHHhCCceEEEcc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIA----------DVTVGSAL---EVAESMGIARAAVVP 140 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~----------D~~~~~~~---~~A~~lgiP~v~~~~ 140 (468)
..... +..+.. ..+|||||+ |.+++++. .-|..+|||.|.++.
T Consensus 72 CV~la-----------l~~l~~---~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (251)
T 2phj_A 72 CVHLG-----------YRVILE---EKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHHHH-----------HHTTTT---TCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHH-----------HHHhcC---CCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEc
Confidence 22211 222221 146999998 34444333 445678999999874
No 59
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.71 E-value=1.6 Score=36.61 Aligned_cols=98 Identities=10% Similarity=0.138 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-----hHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-----HKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADR 78 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-----~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 78 (468)
+..|++++..+.|-..-.+++|...+.+|++|.|+..-.. ...+.+. -++.+.....++....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~---------L~v~~~~~g~gf~~~~--- 95 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEP---------HGVEFQVMATGFTWET--- 95 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGG---------GTCEEEECCTTCCCCG---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHh---------CCcEEEEcccccccCC---
Confidence 3578899999999999999999999999999999965442 1112211 2378887776554321
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCc
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTV 121 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~ 121 (468)
.+.. + -.......+..+.+.+.+ .++|+||.|-+.
T Consensus 96 ~~~~---~-~~~~a~~~l~~a~~~l~~----~~yDlvILDEi~ 130 (196)
T 1g5t_A 96 QNRE---A-DTAACMAVWQHGKRMLAD----PLLDMVVLDELT 130 (196)
T ss_dssp GGHH---H-HHHHHHHHHHHHHHHTTC----TTCSEEEEETHH
T ss_pred CCcH---H-HHHHHHHHHHHHHHHHhc----CCCCEEEEeCCC
Confidence 1111 1 122234445555555544 569999999763
No 60
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=91.55 E-value=0.39 Score=42.11 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
++||||+.-==|. |---+..|+++|.+ +|+|+++.+...+....... ....++++....++.-. ....+.
T Consensus 10 ~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg~g~si-----Tl~~pl~~~~~~~~~~~---v~GTPa 79 (261)
T 3ty2_A 10 PKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRSGASNSL-----TLNAPLHIKNLENGMIS---VEGTPT 79 (261)
T ss_dssp -CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTCC-----CCSSCEEEEECTTSCEE---ESSCHH
T ss_pred CCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCcCcccce-----ecCCCeEEEEecCCeEE---ECCCHH
Confidence 5689988863333 44557888999977 89999999987665443321 22245666654432100 111222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec----------CCcccHHHHH---HHhCCceEEEcc
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD----------VTVGSALEVA---ESMGIARAAVVP 140 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D----------~~~~~~~~~A---~~lgiP~v~~~~ 140 (468)
+..... +..+.. .+|||||+- .+++++..+| ..+|||.|.++.
T Consensus 80 DCV~la-----------l~~l~~----~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 135 (261)
T 3ty2_A 80 DCVHLA-----------ITGVLP----EMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSL 135 (261)
T ss_dssp HHHHHH-----------TTTTSS----SCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEE
T ss_pred HHHHHH-----------HHHhcC----CCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEc
Confidence 221111 122221 469999974 3344444444 556999999874
No 61
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=91.36 E-value=0.54 Score=41.29 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCccChH-HHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 4 QPHVLVIPYPAQGHVA-PLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~-p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
|+|||+.- -.|--. -+..|+++|.+.| +|+++.+...+-.+.... ....++++.......... ....+.
T Consensus 1 Mp~ILlTN--DDGi~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~si-----T~~~pl~~~~~~~~~~~~--v~GTPa 70 (251)
T 2wqk_A 1 MPTFLLVN--DDGYFSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL-----TFTEPLKMRKIDTDFYTV--IDGTPA 70 (251)
T ss_dssp -CEEEEEC--SSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC-----CCSSCEEEEEEETTEEEE--TTCCHH
T ss_pred CCEEEEEc--CCCCCcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCc-----CCCCCceeEEeeccceee--cCCChH
Confidence 56888875 333333 4778899999998 599888876654443221 222455655543221100 112222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEe----------cCCcccHH---HHHHHhCCceEEEcc
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIA----------DVTVGSAL---EVAESMGIARAAVVP 140 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~----------D~~~~~~~---~~A~~lgiP~v~~~~ 140 (468)
+.... -+..+.. ..+|||||+ |.+.+++. .=|..+|||.|.++.
T Consensus 71 DCV~l-----------al~~~l~---~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 71 DCVHL-----------GYRVILE---EKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHHHH-----------HHHTTTT---TCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhh-----------hhhhhcC---CCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 22211 1122111 157999998 54555333 445678999999873
No 62
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=91.00 E-value=0.35 Score=41.11 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|.+++||++--.++.|-++ ...|.+.|.++|++|.++.++.....+..
T Consensus 1 m~~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~~ 48 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMAT 48 (209)
T ss_dssp CCSCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CCCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 8888999988888877777 88999999999999999999887777654
No 63
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.93 E-value=2.9 Score=35.07 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=53.0
Q ss_pred EEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 6 HVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 6 ~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
.|.|. +-+|.|-..-...||..|+++|++|.++-.+.......-.+ ....++.+...+.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~-----~~~~~~~~~~~~~--------------- 62 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSK-----AGKAAFDVFTAAS--------------- 62 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHT-----TSCCSSEEEECCS---------------
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh-----cCCCCCcEEecCc---------------
Confidence 34454 44567999999999999999999999998875443332222 1123333333221
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
..+.++++.+. ..+|+||+|.-..
T Consensus 63 ---------~~l~~~l~~l~-----~~yD~viiD~~~~ 86 (206)
T 4dzz_A 63 ---------EKDVYGIRKDL-----ADYDFAIVDGAGS 86 (206)
T ss_dssp ---------HHHHHTHHHHT-----TTSSEEEEECCSS
T ss_pred ---------HHHHHHHHHhc-----CCCCEEEEECCCC
Confidence 33556666665 3499999997544
No 64
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=89.30 E-value=2 Score=41.87 Aligned_cols=107 Identities=17% Similarity=0.080 Sum_probs=68.9
Q ss_pred ceE-EcccChHH---HhcCCCCCceee---ccCc-hhHHHhhhcCC-----ceeccccccchhhhHHHHHHHhhceeEee
Q 012212 334 GKI-VEWAPQEK---VLGHSSVACFIS---HCGW-NSTMEGLSMGV-----PFLCWPYFSDQYQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 334 v~~-~~~~p~~~---ll~~~~~~~~I~---hGG~-~s~~eal~~Gv-----P~v~~P~~~DQ~~na~rv~~~lG~g~~l~ 400 (468)
+++ .+++|+.+ ++..+++ ||. .=|+ .++.||+++|+ |+|+.-+.+ .+..+ .-|+.++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l----~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL----TSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC----TTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh----CCeEEEC
Confidence 554 48888865 5555555 765 3355 48999999998 666654322 11111 2356666
Q ss_pred ccCCCccCHHHHHHHHHHHhcCh-H-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 012212 401 ADENGIITRQEIQRKVLTLLKND-D-IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKML 460 (468)
Q Consensus 401 ~~~~~~~t~~~l~~ai~~~l~~~-~-~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (468)
. .+.++++++|.++|+++ + -+++.++..+..+.. +.....+++++.+++.
T Consensus 403 p-----~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~-----s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 P-----YDRDEVAAALDRALTMSLAERISRHAEMLDVIVKN-----DINHWQECFISDLKQI 454 (482)
T ss_dssp T-----TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHS
T ss_pred C-----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhc
Confidence 5 46899999999999854 3 344444555555442 5677888888888765
No 65
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=89.23 E-value=0.65 Score=40.65 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCC--CccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 2 SRQPHVLVIPYP--AQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 2 ~~~~~Il~~~~~--~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
++|++.+|++.. +.|=..-...|++.|.++|++|.++-
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 356677766444 44899999999999999999999985
No 66
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=88.91 E-value=2.6 Score=42.55 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCceE--E-cccCh---------HHHhcCCCCCceeecc---C-chhHHHhhhcCCceecccc
Q 012212 332 NRGKI--V-EWAPQ---------EKVLGHSSVACFISHC---G-WNSTMEGLSMGVPFLCWPY 378 (468)
Q Consensus 332 ~nv~~--~-~~~p~---------~~ll~~~~~~~~I~hG---G-~~s~~eal~~GvP~v~~P~ 378 (468)
++|++ + .|++. .++++.+++ ||.-. | ..+++||+++|+|+|+.-.
T Consensus 490 drVKVIf~P~~L~~~d~lf~~d~~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~ 550 (725)
T 3nb0_A 490 DRVKMIFHPEFLNANNPILGLDYDEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNV 550 (725)
T ss_dssp CSEEEEECCSCCCTTCSSSCCCHHHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETT
T ss_pred CceeEEEeccccCCCCccchhHHHHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCC
Confidence 44554 3 78765 457766666 76432 3 3689999999999998744
No 67
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=87.39 E-value=1.9 Score=41.98 Aligned_cols=109 Identities=10% Similarity=-0.014 Sum_probs=71.7
Q ss_pred CceEEcccChHH---HhcCCCCCceee---ccCch-hHHHhhhcC---CceeccccccchhhhHHHHHHHhh-ceeEeec
Q 012212 333 RGKIVEWAPQEK---VLGHSSVACFIS---HCGWN-STMEGLSMG---VPFLCWPYFSDQYQNRNYICEAWK-IGLQFFA 401 (468)
Q Consensus 333 nv~~~~~~p~~~---ll~~~~~~~~I~---hGG~~-s~~eal~~G---vP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~ 401 (468)
.|++...+|+.+ ++..+++ |+. .=|+| +..|++++| .|+|+.-+. ..+.. +| -|+.++.
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~a----Ga~~~----l~~~allVnP 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETC----GAAEV----LGEYCRSVNP 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTB----TTHHH----HGGGSEEECT
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCC----CCHHH----hCCCEEEECC
Confidence 577778888755 4555655 654 35776 568999996 566554332 22322 33 4788877
Q ss_pred cCCCccCHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 402 DENGIITRQEIQRKVLTLLKNDD--IRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 402 ~~~~~~t~~~l~~ai~~~l~~~~--~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
.+.++++++|.++|+++. -+++.+++.+...+ -+...-.++|+++|....
T Consensus 423 -----~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~-----~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 423 -----FDLVEQAEAISAALAAGPRQRAEAAARRRDAARP-----WTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp -----TBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-----CBHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHhhcc
Confidence 579999999999998754 44455555555444 255677888888887653
No 68
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=87.30 E-value=0.37 Score=46.09 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCc-----cChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQ-----GHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~-----GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++|||++++.... |=......+|++|+++||+|++++...
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 5689987753311 223468899999999999999999864
No 69
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=86.38 E-value=9.7 Score=33.28 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCCEEEEEcCC--CccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 3 RQPHVLVIPYP--AQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 3 ~~~~Il~~~~~--~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
++|+.+|++.. +.|-..-...|++.|.++|++|.++-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34566655433 45899999999999999999999986
No 70
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=86.25 E-value=2.7 Score=37.40 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=62.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKL 84 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (468)
||||+.-==|. +---+..|+++|.+.| +|+++.+...+..+.... ....++++..++.+-...-.....+.+.
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg~g~si-----Tl~~pl~~~~~~~~~~~~~~v~GTPaDC 73 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGI-----TLHKPLRMYEVDLCGFRAIATSGTPSDT 73 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSC-----CCSSCBCEEEEECSSSEEEEESSCHHHH
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-----cCCCCeEEEEeccCCCceEEECCcHHHH
Confidence 46776642222 3334788999999988 999999987665443321 2224455555533100000011222222
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec-----------CCcccHH---HHHHHhCCceEEEccc
Q 012212 85 GESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD-----------VTVGSAL---EVAESMGIARAAVVPF 141 (468)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D-----------~~~~~~~---~~A~~lgiP~v~~~~~ 141 (468)
... -+..+ . .+|||||+- .+.+++. .=|..+|||.|.++..
T Consensus 74 V~l-----------al~~l-~----~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 74 VYL-----------ATFGL-G----RKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp HHH-----------HHHHH-T----SCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHH-----------HHhcC-C----CCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 221 12233 2 469999973 3444333 3446689999999753
No 71
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=86.05 E-value=0.66 Score=46.08 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.5
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYP------AQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~------~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|||||++.- ..|=-.-..+|+++|+++||+|+++++.
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 46999999632 1232335678999999999999999964
No 72
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=85.91 E-value=2.7 Score=36.58 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=61.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCC-CCcCCCCCHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLE-LQAADREDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 83 (468)
||||+.-==|. |---+..|+++|.+.| +|+++.+...+..+.... ....++++..++.+-. ..-.....+.+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-----Tl~~pl~~~~~~~~~~~~~~~v~GTPaD 73 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEEH-EVFVVAPDKERSATGHSI-----TIHVPLWMKKVFISERVVAYSTTGTPAD 73 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCC-----CCSSCCCEEECCCSSSEEEEEESSCHHH
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-----cCCCCeEEEEeccCCCCceEEECCcHHH
Confidence 46776642222 3334788999999888 899999987665543322 2224556665543200 00001112222
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec----------CCcccHH---HHHHHhCCceEEEcc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD----------VTVGSAL---EVAESMGIARAAVVP 140 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D----------~~~~~~~---~~A~~lgiP~v~~~~ 140 (468)
.... -+..+.. .+|||||+- .+++++. .=|..+|||.|.++.
T Consensus 74 CV~l-----------al~~l~~----~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 74 CVKL-----------AYNVVMD----KRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp HHHH-----------HHHTTST----TCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHH-----------HHHhhcc----CCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 2211 1222222 469999973 3344333 445678999999864
No 73
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=85.77 E-value=1.8 Score=40.49 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=32.7
Q ss_pred CCEEEEEcC-CCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 4 QPHVLVIPY-PAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 4 ~~~Il~~~~-~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
|++|+|++. +|.|-..-...||..|+++|++|.++.. +...
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~ 42 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPV 42 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCC
Confidence 467776654 4559999999999999999999999998 5433
No 74
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=85.34 E-value=5.5 Score=36.27 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
||++|||+|+..+.. .....++|.++||+|..+.+.+
T Consensus 4 m~~~mrivf~Gt~~f-----a~~~L~~L~~~~~~v~~Vvt~p 40 (318)
T 3q0i_A 4 MSQSLRIVFAGTPDF-----AARHLAALLSSEHEIIAVYTQP 40 (318)
T ss_dssp ---CCEEEEECCSHH-----HHHHHHHHHTSSSEEEEEECCC
T ss_pred cccCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEcCC
Confidence 777899999965532 3455688888999998776643
No 75
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=84.13 E-value=5.4 Score=34.63 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=62.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCC----CCcCCCCC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLE----LQAADRED 80 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 80 (468)
||||+.-==|. |---+..|+++|.+.| +|+++.+...+..+.... ....++++..++.+.. ..-.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si-----Tl~~pl~~~~~~~~~~~~~~~~~~v~GT 73 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAI-----TIAHPVRAYPHPSPLHAPHFPAYRVRGT 73 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSC-----CCSSCBEEEECCCCTTSCCCCEEEEESC
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccc-----cCCCCeEEEEeccCcCCCCCceEEEcCc
Confidence 46776642222 3334788999999888 899999987654443321 2235677777754210 00001122
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEec----------CCcccHH---HHHHHhCCceEEEcc
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIAD----------VTVGSAL---EVAESMGIARAAVVP 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D----------~~~~~~~---~~A~~lgiP~v~~~~ 140 (468)
+.+.....+ . +. .+|||||+- .+++++. .=|..+|||.|.++.
T Consensus 74 PaDCV~lal-----------~-l~-----~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 74 PADCVALGL-----------H-LF-----GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp HHHHHHHHH-----------H-HS-----CSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHH-----------c-CC-----CCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 222222221 1 21 579999973 3344333 445678999999864
No 76
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=83.16 E-value=12 Score=30.58 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=43.3
Q ss_pred eEEcccCh-HHHh-cCCCCCceeeccCchhHHH---hhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCH
Q 012212 335 KIVEWAPQ-EKVL-GHSSVACFISHCGWNSTME---GLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITR 409 (468)
Q Consensus 335 ~~~~~~p~-~~ll-~~~~~~~~I~hGG~~s~~e---al~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~ 409 (468)
.+++..+. ..++ ..++ ..++--||.||+-| ++.+++|++++|.+. .....+... -.....-. -++
T Consensus 92 i~~~~~~~Rk~~m~~~sd-a~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~-~~~~i~~~-----~~~ 161 (176)
T 2iz6_A 92 IVTGLGSARDNINALSSN-VLVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSL-DAGLVHVA-----ADV 161 (176)
T ss_dssp EECCCCSSSCCCCGGGCS-EEEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHH-CTTTEEEE-----SSH
T ss_pred EEcCCHHHHHHHHHHhCC-EEEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCChh-hcCeEEEc-----CCH
Confidence 44566665 3333 3333 34666788887655 577999999999832 111122221 22222222 357
Q ss_pred HHHHHHHHHHhc
Q 012212 410 QEIQRKVLTLLK 421 (468)
Q Consensus 410 ~~l~~ai~~~l~ 421 (468)
+++.+.+.+.++
T Consensus 162 ~e~~~~l~~~~~ 173 (176)
T 2iz6_A 162 AGAIAAVKQLLA 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 77
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=82.97 E-value=2.4 Score=33.27 Aligned_cols=47 Identities=9% Similarity=0.057 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
+.||++.+.++..|-....-++..|..+|++|..+......+.+.+.
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~ 49 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKA 49 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999988776555544443
No 78
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=82.14 E-value=4.8 Score=35.20 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=62.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCC-CCHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADR-EDPLK 83 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~ 83 (468)
||||+.-==|. |---+..|+++|.+.| +|+++.+...+..+.... ....++++..+.... .. .. ..+.+
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg~g~ai-----Tl~~Pl~~~~~~~~~--~~-v~~GTPaD 71 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSL-----TLESSLRTFTFDNGD--IA-VQMGTPTD 71 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCC-----CCSSCCEEEECTTSC--EE-EETCCHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcCccCCc-----CCCCCeEEEEeCCCC--eE-ECCCCHHH
Confidence 67877753333 3344788999998876 999999987665543322 222455665552110 00 11 22332
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEe----------cCCcccHHHHH---HHhCCceEEEcc
Q 012212 84 LGESVARAMRGCLRDLIEKINQSNDCEPIRCVIA----------DVTVGSALEVA---ESMGIARAAVVP 140 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~----------D~~~~~~~~~A---~~lgiP~v~~~~ 140 (468)
..... +..+.. .+|||||+ |.+++++..+| ..+|||.|.++.
T Consensus 72 CV~la-----------l~~ll~----~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 126 (254)
T 2v4n_A 72 CVYLG-----------VNALMR----PRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL 126 (254)
T ss_dssp HHHHH-----------HHTTSS----SCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEE
T ss_pred HHHHH-----------HhhccC----CCCCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 22221 222222 46999997 34444444444 457999999864
No 79
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.79 E-value=8.6 Score=34.28 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCEEEEEc--CCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIP--YPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~--~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+|++.+. -++.|-..-...||..|+++|++|.++=.+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 56666553 3567999999999999999999999987776
No 80
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=81.23 E-value=13 Score=30.98 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcccchH
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVPFGPG 144 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (468)
...+..++.+++.+ +|+||.|.. +..+|+.+|+|.+.+.++..+
T Consensus 129 ~e~~~~i~~l~~~G----~~vvVG~~~---~~~~A~~~Gl~~vli~sg~eS 172 (196)
T 2q5c_A 129 DEITTLISKVKTEN----IKIVVSGKT---VTDEAIKQGLYGETINSGEES 172 (196)
T ss_dssp GGHHHHHHHHHHTT----CCEEEECHH---HHHHHHHTTCEEEECCCCHHH
T ss_pred HHHHHHHHHHHHCC----CeEEECCHH---HHHHHHHcCCcEEEEecCHHH
Confidence 45677888888854 999999944 688999999999998875443
No 81
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=80.95 E-value=19 Score=30.59 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCC--EEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAI--KVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH--~Vt~~~~~ 41 (468)
|+||+|+.++.. .-+.++.++|.+.+| +|..+.+.
T Consensus 1 m~rI~vl~SG~g---~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 1 MLKIGVLVSGRG---SNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp CEEEEEEECSCC---HHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CCEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 468988865543 347788888988888 77655544
No 82
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.83 E-value=8.7 Score=35.24 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=36.2
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++|+|+ .-+|.|-..-...||..|+++|++|.++..+........
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHH
Confidence 4567655 455679999999999999999999999999865543333
No 83
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.07 E-value=15 Score=35.17 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
..|+++..++.|-..-...||..|+++|++|.+++.+.++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 34567777788999999999999999999999999887754
No 84
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=80.04 E-value=6.9 Score=36.90 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++++|||++..+.. -..+++++.+.|++|++++.+.
T Consensus 4 m~~~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~ 40 (403)
T 4dim_A 4 MYDNKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPN 40 (403)
T ss_dssp --CCCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSS
T ss_pred ccCCCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCC
Confidence 777889999966643 3568999999999999997643
No 85
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=80.01 E-value=3.4 Score=32.41 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCEEE-EEcCCCc-cChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 3 RQPHVL-VIPYPAQ-GHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 3 ~~~~Il-~~~~~~~-GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
..||+| ++..|-. ..+--.+=++..|.++||+|++++++.....++.+
T Consensus 5 ~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLleva 54 (157)
T 1kjn_A 5 STGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVA 54 (157)
T ss_dssp -CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHH
T ss_pred cceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheecc
Confidence 357776 4455555 44444677899999999999999999887777764
No 86
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=79.78 E-value=20 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
..+++|+..+. =+.|++.+++.|.++|.+|+++ .....
T Consensus 18 ~~~~llIaGG~--GiaPl~sm~~~l~~~~~~v~l~-g~R~~ 55 (142)
T 3lyu_A 18 FGKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVTFE 55 (142)
T ss_dssp CSEEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE-EEEEG
T ss_pred CCeEEEEECcC--cHHHHHHHHHHHHhcCCcEEEE-EeCCH
Confidence 35788876443 3899999999999999999999 65543
No 87
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=79.10 E-value=14 Score=34.02 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 3 RQPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 3 ~~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
++++|+|+ .-+|.|-..-...||..|+++|++|.++..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH 66 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 35666655 4457799999999999999999999999998743
No 88
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=77.88 E-value=32 Score=29.41 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
+|+||+|+.++.. ..+.++.++|.+. +|+|..+.+......+.+...+ .++.+..++... ..+
T Consensus 21 ~~~rI~~l~SG~g---~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~------~gIp~~~~~~~~------~~~ 85 (229)
T 3auf_A 21 HMIRIGVLISGSG---TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARR------AGVDALHMDPAA------YPS 85 (229)
T ss_dssp TCEEEEEEESSCC---HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHH------TTCEEEECCGGG------SSS
T ss_pred CCcEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHH------cCCCEEEECccc------ccc
Confidence 5689998865553 2477788888876 6888666554321122111111 567766554210 001
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-cHHHHHHHhCCceEEEcc
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-SALEVAESMGIARAAVVP 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 140 (468)
. ....+ ++++.+++ .+||+||+=.+.. -...+-......++-+++
T Consensus 86 r--------~~~~~---~~~~~l~~----~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHp 131 (229)
T 3auf_A 86 R--------TAFDA---ALAERLQA----YGVDLVCLAGYMRLVRGPMLTAFPNRILNIHP 131 (229)
T ss_dssp H--------HHHHH---HHHHHHHH----TTCSEEEESSCCSCCCHHHHHHSTTCEEEEES
T ss_pred h--------hhccH---HHHHHHHh----cCCCEEEEcChhHhCCHHHHhhccCCEEEEcc
Confidence 0 11112 23334443 4599999876533 344455555556666665
No 89
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=77.56 E-value=3.2 Score=33.56 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
++.||++.+.++..|-....-++..|..+|++|.++......+.+.+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~ 63 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAM 63 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999887655444433
No 90
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=77.53 E-value=2.9 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+||++.-.++.|=+. ...+.+.|.++|++|.++.++.....+..
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNGRKFING 49 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGGGGGSCH
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCHHHHhhH
Confidence 588877767765554 88999999999999999999887766543
No 91
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=77.44 E-value=4.4 Score=33.70 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=36.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+||++...++.|-+ -...+.+.|.++|++|.++.++.....+..
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 58988888887754 578899999999999999999887777765
No 92
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=77.34 E-value=32 Score=29.66 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+|++.+ +-+|.|-..-...||..|+++|++|.++=.+.
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3455544 34466999999999999999999999988775
No 93
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=76.65 E-value=2.5 Score=35.44 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHH-HHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMK-LATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~-LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++||||+++... .|+..-+.. +++.|.+.|++|.++.-..
T Consensus 1 M~~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 1 MSCKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp --CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 7778899988777 887765443 5666777899999886543
No 94
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.54 E-value=5 Score=36.92 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=36.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+++...|+.|-..-++.+|..++..|+.|.|++..-..+.+..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 5677888999999999999999999999999999877665544
No 95
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=75.41 E-value=20 Score=31.93 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 4 QPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 4 ~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
..|++++ +-++.|-..-...||..|++.|++|.++-.+...
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 3455544 3457799999999999999999999999876543
No 96
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=75.28 E-value=26 Score=30.82 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCEEEEEc--CCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 4 QPHVLVIP--YPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 4 ~~~Il~~~--~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.+|+++++ .++.|-..-...||..|+++|++|.++-.+...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 45555443 357799999999999999999999999776443
No 97
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=74.29 E-value=5.6 Score=33.66 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
..+|++.+.++..|-....-++..|..+|++|.++......+.+...
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999999887665555443
No 98
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=74.28 E-value=3.2 Score=35.36 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+|++|++.- +.|.+- ..|++.|.++||+|+.++-..
T Consensus 1 M~~m~~ilItG--atG~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 1 MEKVKKIVLIG--ASGFVG--SALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp --CCCEEEEET--CCHHHH--HHHHHHHHTTTCEEEEECSCG
T ss_pred CCCCCEEEEEc--CCchHH--HHHHHHHHHCCCEEEEEEcCc
Confidence 77788988773 334333 478999999999999998753
No 99
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=74.21 E-value=2.2 Score=39.59 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
||++|||+++-.+..| ..+|..|.++||+|+++...
T Consensus 1 mm~~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 1 MIESKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp ---CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCcCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 7778999999665545 35788899999999988653
No 100
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=72.77 E-value=4.4 Score=33.92 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=36.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~~ 49 (468)
|||++--.++.|-+. ...|.+.|.++ |++|.++.++.....+..
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~ 45 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIEL 45 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhHH
Confidence 478877777766655 89999999999 999999999887777764
No 101
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=72.35 E-value=3.5 Score=34.70 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCccChH-HHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 3 RQPHVLVIPYPAQGHVA-PLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~-p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
+.+||++--.++ +..+ -...+.+.|.++|++|.++.++.....+
T Consensus 6 ~~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i 50 (201)
T 3lqk_A 6 AGKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTVQTTD 50 (201)
T ss_dssp TTCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTT
T ss_pred CCCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHH
Confidence 457888777666 5555 7899999999999999999997655444
No 102
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=71.91 E-value=10 Score=34.23 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+..++||++...----..-+-+....++++|++|++++-.
T Consensus 1 m~~~~~vL~v~AHPDDe~l~~ggtla~~~~~G~~V~vv~lT 41 (303)
T 1q74_A 1 MSETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCT 41 (303)
T ss_dssp --CCCEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCeEEEEEeCCchHHHhHHHHHHHHHHCCCcEEEEEEc
Confidence 66667888776554445555667777778889999998754
No 103
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=71.85 E-value=36 Score=27.04 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.+++|+..+. | +.|++.+++.|.++|.+|+++ .....
T Consensus 24 ~~~llIaGG~-G-ItPl~sm~~~l~~~~~~v~l~-g~r~~ 60 (158)
T 3lrx_A 24 GKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVTFE 60 (158)
T ss_dssp SEEEEEEETT-H-HHHHHHHHHHHHHHTCEEEEE-EECBG
T ss_pred CeEEEEEccC-c-HHHHHHHHHHHHhcCCcEEEE-EeCCH
Confidence 5777776443 3 899999999999999999999 65543
No 104
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=71.74 E-value=39 Score=29.87 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=25.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
||||+.- +.|.+- ..|++.|.++||+|+.++-.+.
T Consensus 1 MkILVTG--atGfIG--~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGG--GTGFIG--TALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEEC--CCCHHH--HHHHHHHHHCCCEEEEEECCCC
Confidence 6787763 445443 4689999999999999986543
No 105
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=71.73 E-value=33 Score=30.70 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCEEE-EEc-CCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVL-VIP-YPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il-~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.++++ |.. .++.|-..-...||..|+++|.+|.++-.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34555 443 35779999999999999999999999987653
No 106
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=71.39 E-value=7.5 Score=34.16 Aligned_cols=46 Identities=7% Similarity=0.022 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
+..+|++.+.++..|-....-++..|..+|++|.++......+.+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~ 167 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVL 167 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 3578999999999999999999999999999999888665544443
No 107
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=70.16 E-value=3.6 Score=33.98 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|++ ||++.-.++.+=+ -...+.+.|.++|++|.++.++.....+..
T Consensus 1 ~~k--~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~ 46 (181)
T 1g63_A 1 MYG--KLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFINT 46 (181)
T ss_dssp CCC--CEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTSCG
T ss_pred CCC--EEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHHHH
Confidence 444 7877766666555 678999999999999999999887766543
No 108
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.81 E-value=14 Score=35.52 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=36.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
-+++...|+.|-..-++.+|...+.+|..|.|++..-..+.+.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 3667788899999999999999999999999999987655444
No 109
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=68.28 E-value=3.2 Score=34.72 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+.+||++...++.|=+. ...|.+.|.++|++|.++.++.....+..
T Consensus 7 ~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~~fi~~ 52 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAEDLIPA 52 (194)
T ss_dssp GGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHHHHSCH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHHHHHHH
Confidence 34688887777766665 68999999999999999999877666543
No 110
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=68.14 E-value=16 Score=34.63 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCCC-CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQ-PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~-~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.++ +||++++. +..+ . -+.++.++.|++|+++.+..
T Consensus 1 M~~~~k~l~Il~~-~~~~-~---~i~~aa~~lG~~vv~v~~~~ 38 (425)
T 3vot_A 1 MTKRNKNLAIICQ-NKHL-P---FIFEEAERLGLKVTFFYNSA 38 (425)
T ss_dssp -CCCCCEEEEECC-CTTC-C---HHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcEEEEECC-ChhH-H---HHHHHHHHCCCEEEEEECCC
Confidence 7654 66667653 3322 2 35677778899999987654
No 111
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=67.65 E-value=5.9 Score=33.44 Aligned_cols=43 Identities=9% Similarity=-0.014 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCccChHH-HHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 3 RQPHVLVIPYPAQGHVAP-LMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p-~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
+.+||++--.++ +..+- ...+.+.|.++|++|.++.++.....
T Consensus 4 ~~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~~v 47 (207)
T 3mcu_A 4 KGKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQST 47 (207)
T ss_dssp TTCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC-----
T ss_pred CCCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHHHH
Confidence 567898776666 45664 78999999999999999999866533
No 112
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=66.62 E-value=36 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++|||+|+..+.. .....++|.+.||+|..+.+.
T Consensus 1 s~~mrIvf~Gt~~f-----a~~~L~~L~~~~~~i~~Vvt~ 35 (314)
T 1fmt_A 1 SESLRIIFAGTPDF-----AARHLDALLSSGHNVVGVFTQ 35 (314)
T ss_dssp CCCCEEEEEECSHH-----HHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEeC
Confidence 35689999976542 245567777889999866654
No 113
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=66.45 E-value=6 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.++||.|+-.++.| |.++|+.|+++||+|+..=..
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcCC
Confidence 57899999888877 667999999999999987553
No 114
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=66.19 E-value=17 Score=30.91 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCccChHH----HHHHHHHHHHC-CCEEEEEECCcc-hHHHH---HhhhhhccCCCCCeEEEEcCCCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAP----LMKLATKIAER-AIKVTVVNTQFI-HKKII---ASLQEKAEDSSSQIKLVTIPDGLEL 73 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p----~~~LA~~L~~r-GH~Vt~~~~~~~-~~~i~---~~~~~~~~~~~~~i~~~~~~~~~~~ 73 (468)
.|.+|+++.-.-.|.++| ++.-|+.|++. |-+|+.++.... .+... .+|. ..+ +.+.+...
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~Ga-------d~v--~~v~~~~~- 71 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYGV-------DKL--HVFDAEGL- 71 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGTC-------SEE--EEEECGGG-
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCC-------CEE--EEecCccc-
Confidence 356788888766676654 57778888763 777777766543 22222 2231 111 22221100
Q ss_pred CcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEc
Q 012212 74 QAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVV 139 (468)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~ 139 (468)
...+.. .....+.++++. .+||+|++-.... .+..+|..|++|.+.-.
T Consensus 72 ---~~~~~~--------~~a~~l~~~i~~-------~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv 122 (217)
T 3ih5_A 72 ---YPYTSL--------PHTSILVNLFKE-------EQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122 (217)
T ss_dssp ---SSCCHH--------HHHHHHHHHHHH-------HCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSC
T ss_pred ---ccCCHH--------HHHHHHHHHHHh-------cCCCEEEEeCCcchhhHHHHHHHHhCCCccceE
Confidence 011111 122223444444 3499999997655 45679999999987644
No 115
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=65.98 E-value=8.2 Score=33.10 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+.+|++...||.|-..-++.+|..|+++|++|.++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 467888999999999999999999999999999888765
No 116
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=65.92 E-value=11 Score=32.02 Aligned_cols=47 Identities=4% Similarity=0.098 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
..||++.+.++..|-....-++..|..+|++|+.+...-..+.+.+.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~ 138 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEE 138 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHH
Confidence 47999999999999999999999999999999999887665555443
No 117
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=65.15 E-value=62 Score=27.23 Aligned_cols=107 Identities=8% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDP 81 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (468)
|+||.++.++. |+ -+.++.++|.+. +|+|..+.+......+.+...+ .++.+..++.. ...+.
T Consensus 3 m~ki~vl~sG~-g~--~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~------~gIp~~~~~~~------~~~~~ 67 (212)
T 3av3_A 3 MKRLAVFASGS-GT--NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAR------ENVPAFVFSPK------DYPSK 67 (212)
T ss_dssp CEEEEEECCSS-CH--HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHH------TTCCEEECCGG------GSSSH
T ss_pred CcEEEEEEECC-cH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHH------cCCCEEEeCcc------cccch
Confidence 56887775554 33 467778888877 7899766655322222211111 45666544321 00110
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-cHHHHHHHhCCceEEEcc
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-SALEVAESMGIARAAVVP 140 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 140 (468)
....+ ++++.+++ .+||++|.=.+.. -...+-......++-+++
T Consensus 68 --------~~~~~---~~~~~l~~----~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHp 112 (212)
T 3av3_A 68 --------AAFES---EILRELKG----RQIDWIALAGYMRLIGPTLLSAYEGKIVNIHP 112 (212)
T ss_dssp --------HHHHH---HHHHHHHH----TTCCEEEESSCCSCCCHHHHHHTTTCEEEEES
T ss_pred --------hhhHH---HHHHHHHh----cCCCEEEEchhhhhCCHHHHhhhcCCEEEEec
Confidence 11112 23334443 4599999876533 344455555566776665
No 118
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=64.97 E-value=13 Score=27.45 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+|+||+++|..|.|--.-...+=+.+.++|.++.+-..+
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 467999999998866666778889999999887766554
No 119
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=64.73 E-value=5.7 Score=35.44 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++++||.++-.+..| ..+|+.|+++||+|+++...
T Consensus 1 Mm~~~kV~VIGaG~mG-----~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 1 MTGITNVTVLGTGVLG-----SQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CCSCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 7778899999655544 47899999999999997653
No 120
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=63.84 E-value=39 Score=33.11 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|++++ |.-.-.+.|++.|.+-|-+|+.+..+.
T Consensus 365 KrvaI~-----gd~~~~~~la~fL~elGm~vv~v~~~~ 397 (523)
T 3u7q_B 365 KRFALW-----GDPDFVMGLVKFLLELGCEPVHILCHN 397 (523)
T ss_dssp CEEEEE-----CSHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CEEEEE-----CCchHHHHHHHHHHHcCCEEEEEEeCC
Confidence 466665 334455678888888898888776553
No 121
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=63.83 E-value=15 Score=31.98 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.3
Q ss_pred CC-CCCEEEEEcCCCc----------c-ChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MS-RQPHVLVIPYPAQ----------G-HVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~-~~~~Il~~~~~~~----------G-H~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+ .|+|||++-.... | ...=+..-...|.+.|++|+++++.
T Consensus 5 m~~~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccccCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44 3679998765531 2 2344666788899999999999974
No 122
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=63.82 E-value=5.6 Score=35.73 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|.+++||.|+-.+..|. .+|+.|.+.||+|+++..
T Consensus 1 M~~~~~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~~ 35 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGK-----PMAINLLKEGVTVYAFDL 35 (301)
T ss_dssp ---CCEEEEECCCTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEECccHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 77889999996665554 568889999999987654
No 123
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=63.44 E-value=43 Score=30.19 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-+++...|+.|-..-++.+|...+.+|..|.|++.....+.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 113 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHH
Confidence 35677888999999999999999999999999998866654443
No 124
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=61.30 E-value=3.4 Score=38.56 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++|+||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 12 ~m~M~kI~iIG~G~mG-----~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 12 LLYLNKAVVFGSGAFG-----TALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp CCCEEEEEEECCSHHH-----HHHHHHHTTTEEEEEEECSC
T ss_pred hhccCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 3444599999766555 46899999999999998764
No 125
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=61.04 E-value=44 Score=28.22 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcc----hHHHHHhhhhhccCCCCCeEEEEcCCCCCCC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFI----HKKIIASLQEKAEDSSSQIKLVTIPDGLELQ 74 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~----~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 74 (468)
|.+++||+++.++. || -+.+|.+++.+. +++|..+.+... .+...+ .++.+..++..
T Consensus 5 ~~~~~ri~vl~SG~-gs--nl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~----------~gIp~~~~~~~---- 67 (215)
T 3kcq_A 5 MKKELRVGVLISGR-GS--NLEALAKAFSTEESSVVISCVISNNAEARGLLIAQS----------YGIPTFVVKRK---- 67 (215)
T ss_dssp --CCEEEEEEESSC-CH--HHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHH----------TTCCEEECCBT----
T ss_pred CCCCCEEEEEEECC-cH--HHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHH----------cCCCEEEeCcc----
Confidence 66778998765544 33 355666776544 378887766432 123333 45666655421
Q ss_pred cCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-cHHHHHHHhCCceEEEcc
Q 012212 75 AADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-SALEVAESMGIARAAVVP 140 (468)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 140 (468)
++.+ .++++.+++ .+||+||.=.+.. -...+-+...-.++-+++
T Consensus 68 -----~~~~-------------~~~~~~L~~----~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHp 112 (215)
T 3kcq_A 68 -----PLDI-------------EHISTVLRE----HDVDLVCLAGFMSILPEKFVTDWHHKIINIHP 112 (215)
T ss_dssp -----TBCH-------------HHHHHHHHH----TTCSEEEESSCCSCCCHHHHHHTTTSEEEEES
T ss_pred -----cCCh-------------HHHHHHHHH----hCCCEEEEeCCceEeCHHHHhhccCCeEEECc
Confidence 1111 333444444 4599999876533 444455555556666665
No 126
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.99 E-value=29 Score=33.03 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~ 45 (468)
.|+|+..+|.|-..-...||..|+++ |++|.++..+.+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 45677777889999999999999999 99999999987654
No 127
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=60.86 E-value=29 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++||++...-.--..-+-+....++++|++|++++-.
T Consensus 4 ~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT 40 (242)
T 2ixd_A 4 LHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLT 40 (242)
T ss_dssp CSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEc
Confidence 4666554443334555666667778899998877543
No 128
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=59.40 E-value=44 Score=32.20 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEc------CCCCCCCcCCC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTI------PDGLELQAADR 78 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~ 78 (468)
+|-+|++. ++-.-+..+|+.|++.|.+|. ++......+++.| +....+ |+.+.-.- ..
T Consensus 10 i~~aLISV---sDK~glvelAk~L~~lGfeI~--ATgGTak~L~e~G----------I~v~~V~~vTgfPEil~GRV-KT 73 (523)
T 3zzm_A 10 IRRALISV---YDKTGLVDLAQGLSAAGVEII--STGSTAKTIADTG----------IPVTPVEQLTGFPEVLDGRV-KT 73 (523)
T ss_dssp CCEEEEEE---SSCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHTTT----------CCCEEHHHHHSCCCCTTTTS-SS
T ss_pred ccEEEEEE---eccccHHHHHHHHHHCCCEEE--EcchHHHHHHHcC----------CceeeccccCCCchhhCCcc-cc
Confidence 34445544 455668899999999998874 6666777777744 555543 33333222 33
Q ss_pred CCHHHHHHHHHHH-hhHHHHHHHHHHhhCCCCCCceEEEecCCcc
Q 012212 79 EDPLKLGESVARA-MRGCLRDLIEKINQSNDCEPIRCVIADVTVG 122 (468)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~ 122 (468)
-++.-.-..+.+. ..+..+++-+. . -.+.|+||++...+
T Consensus 74 LHP~ihgGiLa~r~~~~h~~~l~~~-~----i~~iDlVvvNLYPF 113 (523)
T 3zzm_A 74 LHPRVHAGLLADLRKSEHAAALEQL-G----IEAFELVVVNLYPF 113 (523)
T ss_dssp CSHHHHHHHHCCTTSHHHHHHHHHH-T----CCCCSEEEEECCCH
T ss_pred CCchhhhhhccCCCCHHHHHHHHHC-C----CCceeEEEEeCCCh
Confidence 3444333333322 22223333222 1 15689999995443
No 129
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=59.06 E-value=83 Score=26.72 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHC----CCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAER----AIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r----GH~Vt~~~~~~ 42 (468)
|++.+-|+|.-.++.|-..-...|++.|..+ |+.|.+...|.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~ 67 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG 67 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC
Confidence 3444567788888999999999999999998 99997666553
No 130
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=59.03 E-value=13 Score=32.41 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=24.0
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEcccc
Q 012212 110 EPIRCVI-ADVTVG-SALEVAESMGIARAAVVPFG 142 (468)
Q Consensus 110 ~~pDlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (468)
..||+|| +|+..- .+..=|..+|||+|.+..+.
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 4688876 565443 56777899999999987543
No 131
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=58.93 E-value=8 Score=35.44 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
+|||+++-.+..| ..+|..|+++||+|+++......+.+.+
T Consensus 3 ~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 43 (335)
T 3ghy_A 3 LTRICIVGAGAVG-----GYLGARLALAGEAINVLARGATLQALQT 43 (335)
T ss_dssp CCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCHHHHHHHHH
T ss_pred CCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEEChHHHHHHHH
Confidence 5799999766655 3678999999999999987544444544
No 132
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=58.70 E-value=5.5 Score=36.99 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++++||.|+-.+..| ..+|+.|.++||+|+++...
T Consensus 19 Mm~~mkIgiIGlG~mG-----~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMG-----ADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp ---CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred hhcCCEEEEECchHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 6677899999655444 47899999999999988654
No 133
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=58.56 E-value=17 Score=34.83 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 48 (468)
-+++...|+.|-..-++.+|...+. .|..|.|++..-..+.+.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 3567788899999999999999886 589999999986655443
No 134
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=58.17 E-value=8 Score=30.59 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..||+++- .|++- ..+++.|.++||+|+++...
T Consensus 3 ~~~vlI~G---~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCG---HSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEEC---CCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 46788773 35554 68899999999999999875
No 135
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=58.06 E-value=9.2 Score=34.34 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+.+++|+++- +.|.+- ..|+++|.++||+|+.++-..
T Consensus 1 M~~~~~ilVtG--atG~iG--~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 1 MDKKSRVLIVG--GTGYIG--KRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp -CCCCCEEEES--TTSTTH--HHHHHHHHHTTCCEEEECCSC
T ss_pred CCCCCEEEEEc--CCcHHH--HHHHHHHHhCCCcEEEEECCC
Confidence 66567888773 445443 467899999999999988763
No 136
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=57.88 E-value=29 Score=34.59 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=33.9
Q ss_pred CCCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 3 RQPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
++.+|+|+ .-+|.|-..-...||..|+++|++|.++..+..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 34566655 455669999999999999999999999999873
No 137
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=57.31 E-value=49 Score=32.35 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+|++++. .-.-.++|++.|.+.|-+|..+.....
T Consensus 361 krv~i~g-----d~~~~~~la~~L~ElGm~vv~v~~~~~ 394 (519)
T 1qgu_B 361 KKFGLYG-----DPDFVMGLTRFLLELGCEPTVILSHNA 394 (519)
T ss_dssp CEEEEES-----CHHHHHHHHHHHHHTTCEEEEEEETTC
T ss_pred CEEEEEC-----CchHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 4676663 344567788888888988886666543
No 138
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=57.22 E-value=13 Score=31.48 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+||++...++.+-+. ...|.+.|.++| +|.++.++.....+..
T Consensus 19 ~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv~~ 62 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFLDK 62 (209)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTCCG
T ss_pred CCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhcCH
Confidence 4689888888887666 889999999999 9999999887766543
No 139
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=57.00 E-value=71 Score=25.40 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=77.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCC-CCCce
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHS-SVACF 354 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~-~~~~~ 354 (468)
.|-|-+||.. +-...++....++..+..+-+.+... +..|+.+. .|+... .+. .++++
T Consensus 4 ~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~sa------HR~p~~~~----------~~~~~a---~~~~~~~Vi 62 (159)
T 3rg8_A 4 LVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSA------HKTAEHVV----------SMLKEY---EALDRPKLY 62 (159)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT------TTCHHHHH----------HHHHHH---HTSCSCEEE
T ss_pred eEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc------cCCHHHHH----------HHHHHh---hhcCCCcEE
Confidence 4666677754 56677888888998888766655533 45555442 111111 111 23457
Q ss_pred eeccCc----hhHHHhhhcCCceecccccc---chhhhHHHHHHHh--hceeEeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 355 ISHCGW----NSTMEGLSMGVPFLCWPYFS---DQYQNRNYICEAW--KIGLQFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 355 I~hGG~----~s~~eal~~GvP~v~~P~~~---DQ~~na~rv~~~l--G~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
|.=+|. .++..++ .-+|+|.+|... +-.+ -.-+.. + |+.+.-= ++-.++-.++..|- -++|+++
T Consensus 63 Ia~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~d-LlS~vq-mp~GvpVatv---~~~~nAa~lA~~Il-~~~d~~l 135 (159)
T 3rg8_A 63 ITIAGRSNALSGFVDGF-VKGATIACPPPSDSFAGAD-IYSSLR-MPSGISPALV---LEPKNAALLAARIF-SLYDKEI 135 (159)
T ss_dssp EEECCSSCCHHHHHHHH-SSSCEEECCCCCCGGGGTH-HHHHHC-CCTTCCCEEC---CSHHHHHHHHHHHH-TTTCHHH
T ss_pred EEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCcc-HHHHHh-CCCCCceEEe---cCchHHHHHHHHHH-hCCCHHH
Confidence 877764 3555443 568999999632 2222 221222 2 4433211 12255666665553 4468999
Q ss_pred HHHHHHHHHHHHHH
Q 012212 426 RSNSLKLKEVARKS 439 (468)
Q Consensus 426 r~~a~~l~~~~~~~ 439 (468)
+++.+..+++....
T Consensus 136 ~~kl~~~r~~~~~~ 149 (159)
T 3rg8_A 136 ADSVKSYMESNAQK 149 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877663
No 140
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=56.99 E-value=20 Score=29.22 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+..|++++-..-.=.-.=+..-.+.|.+.|++|++++...
T Consensus 4 m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~ 45 (177)
T 4hcj_A 4 MGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFI 45 (177)
T ss_dssp -CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 777778776644322122335566778889999999999754
No 141
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=56.68 E-value=1.1e+02 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred EEEEEcCCCcc---Ch--HHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 6 HVLVIPYPAQG---HV--APLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 6 ~Il~~~~~~~G---H~--~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
.|++.|....+ .+ .-+..+++.|.++|++|.+..++...+.
T Consensus 182 ~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~ 227 (348)
T 1psw_A 182 MIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEA 227 (348)
T ss_dssp EEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHH
T ss_pred EEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHH
Confidence 46666654221 22 2688999999999999988766554433
No 142
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=56.62 E-value=17 Score=32.73 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=30.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
|||+++-.++.|- .+|..|+++||+|+++.... .+.+.+
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~-~~~i~~ 41 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQRSGEDVHFLLRRD-YEAIAG 41 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHHTSCCEEEECSTT-HHHHHH
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEEcCc-HHHHHh
Confidence 6899997777763 56889999999999999876 466665
No 143
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=56.32 E-value=7.9 Score=34.87 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+||||+++-.+..| ..+|..|.++||+|+++...
T Consensus 2 ~~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEECC
Confidence 35799999665555 36789999999999998764
No 144
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=56.28 E-value=59 Score=27.55 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHH-HHHCCCEEEEEECCcchHHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATK-IAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~-L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
-+++...|+.|-..-++.+|.. +.+.|..|.+++.....+.+..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~ 76 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHH
Confidence 3567788899999999998765 5566899999998877665544
No 145
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=56.11 E-value=20 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCc----------c-ChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQ----------G-HVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~----------G-H~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.|+|||++..... | ...=+......|.+.|++|+++++.
T Consensus 2 ~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 2 TPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp -CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679998765431 1 1234666788888999999999975
No 146
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=55.88 E-value=17 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCCc-cCh-HHHHHHHHHHHHCC--CEEEEEECCcchH
Q 012212 1 MSRQPHVLVIPYPAQ-GHV-APLMKLATKIAERA--IKVTVVNTQFIHK 45 (468)
Q Consensus 1 m~~~~~Il~~~~~~~-GH~-~p~~~LA~~L~~rG--H~Vt~~~~~~~~~ 45 (468)
|...+|++|+-+.+. -.. +..+..|....++| |+|.++-.++...
T Consensus 4 ~~~~~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 4 MSANDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp SSTTSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred cccCCeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 555688887766543 222 34667788999999 8999999987766
No 147
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=55.80 E-value=8.4 Score=35.01 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
.++||+++-.+..| ..+|..|++.||+|+++..+...+.+.+.|
T Consensus 18 ~~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g 61 (318)
T 3hwr_A 18 QGMKVAIMGAGAVG-----CYYGGMLARAGHEVILIARPQHVQAIEATG 61 (318)
T ss_dssp --CEEEEESCSHHH-----HHHHHHHHHTTCEEEEECCHHHHHHHHHHC
T ss_pred cCCcEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcHhHHHHHHhCC
Confidence 46899999777666 467899999999999994444455565533
No 148
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=55.43 E-value=6.3 Score=35.46 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+.++||.|+-.+..|. .+|+.|+++||+|+++....
T Consensus 12 M~~~~~I~vIG~G~mG~-----~~A~~l~~~G~~V~~~dr~~ 48 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGA-----PMATRMTEWPGGVTVYDIRI 48 (296)
T ss_dssp ---CCCEEEECCSTTHH-----HHHHHHTTSTTCEEEECSST
T ss_pred ccCCCeEEEECcCHHHH-----HHHHHHHHCCCeEEEEeCCH
Confidence 33457899997666653 68999999999999986543
No 149
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=55.36 E-value=62 Score=24.96 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHH-hhhhhccCCCCCeEEEEcCCCCCCCcCCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIA-SLQEKAEDSSSQIKLVTIPDGLELQAADRE 79 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (468)
++|+|.+.. ...+-.-++.+|+.|.+. ||++ +.+......+.+ .| +....+..+
T Consensus 2 ~~~~ialsv--~D~dK~~~v~~a~~~~~ll~Gf~l--~AT~gTa~~L~e~~G----------l~v~~v~k~--------- 58 (134)
T 2xw6_A 2 HMRALALIA--HDAKKEEMVAFCQRHREVLARFPL--VATGTTGRRIEEATG----------LTVEKLLSG--------- 58 (134)
T ss_dssp CSCEEEEEE--CGGGHHHHHHHHHHTHHHHTTSCE--EECHHHHHHHHHHHC----------CCCEECSCG---------
T ss_pred CccEEEEEE--ecccHHHHHHHHHHHHHHhCCCEE--EEccHHHHHHHHhhC----------ceEEEEEec---------
Confidence 578888774 557778899999999999 9965 455555666665 44 333332211
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC--cc--------cHHHHHHHhCCceEEE
Q 012212 80 DPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT--VG--------SALEVAESMGIARAAV 138 (468)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~--~~--------~~~~~A~~lgiP~v~~ 138 (468)
..+ .++++-++++. .+.|+||.-.- .. ....+|-..+||++..
T Consensus 59 -~~e--------G~p~I~d~I~~-------geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 111 (134)
T 2xw6_A 59 -PLG--------GDQQMGARVAE-------GRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATN 111 (134)
T ss_dssp -GGT--------HHHHHHHHHHT-------TCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECS
T ss_pred -CCC--------CcchHHHHHHC-------CCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcC
Confidence 000 22333444433 67999998543 11 3457889999998763
No 150
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=55.30 E-value=33 Score=32.90 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.3
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 384 ~~pDl~ig~~~---~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 384 EGVDLLISNTY---GKFIAREENIPFVRFG 410 (458)
T ss_dssp SCCSEEEESGG---GHHHHHHHTCCEEECS
T ss_pred cCCCEEEeCcc---hHHHHHHcCCCEEEee
Confidence 46999998853 5778999999999764
No 151
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=55.12 E-value=8.2 Score=33.31 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=34.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|||.|..-+|.|=..-...||..|+++|++|.++-.+..
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 578887777779999999999999999999999987653
No 152
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=55.11 E-value=22 Score=34.13 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 374 ~~pDllig~~~---~~~~a~k~gip~~~~g 400 (458)
T 3pdi_B 374 GQAQLVIGNSH---ALASARRLGVPLLRAG 400 (458)
T ss_dssp HTCSEEEECTT---HHHHHHHTTCCEEECS
T ss_pred cCCCEEEEChh---HHHHHHHcCCCEEEec
Confidence 45999999854 6789999999998754
No 153
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=54.83 E-value=11 Score=33.65 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+.|++|+++- +.|.+- ..|++.|.++||+|+.++-..
T Consensus 1 M~~~~~ilVtG--atG~iG--~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 1 MGSRSRILLIG--ATGYIG--RHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp -CCCCCEEEES--TTSTTH--HHHHHHHHHTTCCEEEECCCC
T ss_pred CCCCCEEEEEc--CCcHHH--HHHHHHHHhCCCCEEEEECCc
Confidence 66567887774 344443 368899999999999887653
No 154
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=54.35 E-value=16 Score=27.18 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=42.8
Q ss_pred CceeeccCchh---------HHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 352 ACFISHCGWNS---------TMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 352 ~~~I~hGG~~s---------~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
+++|--.|..| +..|...|+|++++=-++.+. .-..+++. +..++- +|.+.|.++|+..++
T Consensus 40 ~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~~~-a~~iV~-------Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 40 DAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELEAV-SSEVVG-------WNPHCIRDALEDALD 109 (111)
T ss_dssp SEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHHHH-CSEEEC-------SCHHHHHHHHHHHHC
T ss_pred CEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHHhh-Cceecc-------CCHHHHHHHHHhccC
Confidence 44998999887 667889999999776655442 22235553 433333 889999999998764
No 155
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=54.28 E-value=84 Score=25.26 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=81.8
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
|.|-|-+||.. +-...++....+++.+..+-+.+... ...|+.+.+. +-+ ...-.++++
T Consensus 12 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa------HR~p~~l~~~----------~~~---a~~~g~~Vi 70 (170)
T 1xmp_A 12 SLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA------HRTPDYMFEY----------AET---ARERGLKVI 70 (170)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTSHHHHHHH----------HHH---TTTTTCCEE
T ss_pred CcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHHHH----------HHH---HHhCCCcEE
Confidence 45777778864 66778888889998888876666533 4555544211 100 001113447
Q ss_pred eeccCc----hhHHHhhhcCCceeccccccc--hhhhHH-HHHH--Hhhcee-EeeccCCCccCHHHHHHHHHHHhcChH
Q 012212 355 ISHCGW----NSTMEGLSMGVPFLCWPYFSD--QYQNRN-YICE--AWKIGL-QFFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 355 I~hGG~----~s~~eal~~GvP~v~~P~~~D--Q~~na~-rv~~--~lG~g~-~l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
|.=+|. .++..++ .-+|+|.+|.... .-..+. -+.. . |+.+ ++..++.+-.++-.++..|. -+.|++
T Consensus 71 Ia~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~daLlSivqmP~-GvpVatV~I~~a~~~nAallAaqIl-a~~d~~ 147 (170)
T 1xmp_A 71 IAGAGGAAHLPGMVAAK-TNLPVIGVPVQSKALNGLDSLLSIVQMPG-GVPVATVAIGKAGSTNAGLLAAQIL-GSFHDD 147 (170)
T ss_dssp EEEEESSCCHHHHHHTT-CCSCEEEEEECCTTTTTHHHHHHHHCCCT-TCCCEECCSSHHHHHHHHHHHHHHH-HTTCHH
T ss_pred EEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCeeEEEecCCcchHHHHHHHHHHH-ccCCHH
Confidence 766554 3444444 4789999997432 112221 1222 2 4432 11222101245666666664 557899
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 012212 425 IRSNSLKLKEVARKSLLG 442 (468)
Q Consensus 425 ~r~~a~~l~~~~~~~~~~ 442 (468)
++++.+..++++++.+.+
T Consensus 148 l~~kl~~~r~~~~~~v~~ 165 (170)
T 1xmp_A 148 IHDALELRREAIEKDVRE 165 (170)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988875444
No 156
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=53.97 E-value=14 Score=33.27 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.|.||.|+-.+.+|. ++|+.|.++||+|+++.-.
T Consensus 2 ~M~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~dr~ 35 (300)
T 3obb_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDLV 35 (300)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECSS
T ss_pred CcCEEEEeeehHHHH-----HHHHHHHhCCCeEEEEcCC
Confidence 367999998888874 7899999999999988543
No 157
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=53.97 E-value=25 Score=30.04 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCCceeeccCchhHHHhhhcCCceecccccc
Q 012212 350 SVACFISHCGWNSTMEGLSMGVPFLCWPYFS 380 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~ 380 (468)
.++++|+.||.......- .++|+|-++..+
T Consensus 63 ~~dVIISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeEEEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 456699999999998876 579999998754
No 158
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=53.84 E-value=13 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|+||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 19 ~~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 19 SHMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred ccCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 457899999655444 57899999999999988654
No 159
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=53.67 E-value=89 Score=25.41 Aligned_cols=145 Identities=16% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +-...++....++..+..+-+.+... +..|+.+.+. +-+ ...-.++++|
T Consensus 23 ~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa------HR~p~~l~~~----------~~~---a~~~g~~ViI 81 (182)
T 1u11_A 23 VVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSA------HRTPDRLADY----------ART---AAERGLNVII 81 (182)
T ss_dssp SEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTCHHHHHHH----------HHH---TTTTTCCEEE
T ss_pred EEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEcc------cCCHHHHHHH----------HHH---HHhCCCcEEE
Confidence 4666678764 66777888889998888876666543 4555544211 110 0011134477
Q ss_pred eccCc----hhHHHhhhcCCceeccccccc--hhhhH-HHHHH--Hhhcee-EeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSD--QYQNR-NYICE--AWKIGL-QFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~D--Q~~na-~rv~~--~lG~g~-~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
.=+|. .++..++ .-+|+|.+|.... .-..+ .-+.. . |+.+ ++..++.+-.++-.++..|. -++|+++
T Consensus 82 a~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivqmP~-GvpVatV~I~~a~~~nAallAaqIl-a~~d~~l 158 (182)
T 1u11_A 82 AGAGGAAHLPGMCAAW-TRLPVLGVPVESRALKGMDSLLSIVQMPG-GVPVGTLAIGASGAKNAALLAASIL-ALYNPAL 158 (182)
T ss_dssp EEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHCCCT-TSCCEECCSSHHHHHHHHHHHHHHH-GGGCHHH
T ss_pred EecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCceEEEecCCccchHHHHHHHHHH-ccCCHHH
Confidence 66553 3555444 4789999997432 11222 11222 2 5542 12222101245666666664 5678999
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 012212 426 RSNSLKLKEVARKSLLGGG 444 (468)
Q Consensus 426 r~~a~~l~~~~~~~~~~~g 444 (468)
+++.+..++.++..+.+.+
T Consensus 159 ~~kL~~~r~~~~~~v~~~~ 177 (182)
T 1u11_A 159 AARLETWRALQTASVPNSP 177 (182)
T ss_dssp HHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988655443
No 160
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=53.66 E-value=5.6 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
++|+||.|+-.+..| ..+|+.|.++||+|+++..
T Consensus 21 m~mmkI~IIG~G~mG-----~~la~~l~~~g~~V~~v~~ 54 (220)
T 4huj_A 21 QSMTTYAIIGAGAIG-----SALAERFTAAQIPAIIANS 54 (220)
T ss_dssp GGSCCEEEEECHHHH-----HHHHHHHHHTTCCEEEECT
T ss_pred hcCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 456899998654444 4789999999999998443
No 161
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=52.93 E-value=8.5 Score=29.83 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|+||+++-. |.+ -..+|+.|.++||+|+++....
T Consensus 5 ~~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp -CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECCH
Confidence 3567888743 443 4578999999999999987643
No 162
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=52.63 E-value=10 Score=33.32 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred CCCceeeccCchhHHHhhhc---CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 350 SVACFISHCGWNSTMEGLSM---GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~---GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
.++++|.-||=||+.+++.. ++|++.++.. . +|.- .+ +.++++.+++++++++
T Consensus 41 ~~D~vv~~GGDGTll~~a~~~~~~~PilGIn~G-----------~-~Gfl-----~~---~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 41 TADLIVVVGGDGTVLKAAKKAADGTPMVGFKAG-----------R-LGFL-----TS---YTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CCSEEEEEECHHHHHHHHTTBCTTCEEEEEESS-----------S-CCSS-----CC---BCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEeCcHHHHHHHHHhCCCCCEEEEECC-----------C-CCcc-----Cc---CCHHHHHHHHHHHHcC
Confidence 34669999999999999876 8898888521 1 1221 12 5678888888888864
No 163
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=52.63 E-value=27 Score=31.89 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+++|||+|+. --+....+.++|.++||+|..+.+
T Consensus 20 ~~~mrIvf~G-----~~~fa~~~L~~L~~~~~~i~~Vvt 53 (329)
T 2bw0_A 20 FQSMKIAVIG-----QSLFGQEVYCHLRKEGHEVVGVFT 53 (329)
T ss_dssp -CCCEEEEEC-----CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEc-----CcHHHHHHHHHHHHCCCeEEEEEe
Confidence 3448999982 223344577899999999986665
No 164
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=52.52 E-value=14 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+.+++|++.- +.|-+- ..|++.|.++||+|+.+...
T Consensus 2 M~~~~~vlVTG--atG~iG--~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 2 MSTKGTILVTG--GAGYIG--SHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp CCSSCEEEEET--TTSHHH--HHHHHHHHHTTCEEEEECCC
T ss_pred CCCCcEEEEec--CCcHHH--HHHHHHHHHCCCcEEEEecC
Confidence 55567777663 333332 47899999999999988653
No 165
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=52.51 E-value=18 Score=29.85 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCccChHHHH-HHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLM-KLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~-~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.|+||+++-....|+..-+. .+++.|.+.|++|.++.-..
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 45688877655578766544 45677778899998887643
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=52.35 E-value=60 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.0
Q ss_pred CEE-EEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHV-LVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~I-l~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.+| +++..+|.|-..-+..||..|.++|++|.+++.+.+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 445 45566677999999999999999999999999886654
No 167
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=52.27 E-value=12 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCcc-----ChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQG-----HVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~G-----H~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..+|+++| ++| -.++...|++.|.++|.+|.|+.+|-
T Consensus 23 A~~ViIvP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 64 (180)
T 1pno_A 23 ASKVIIVP--GYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 64 (180)
T ss_dssp CSEEEEEE--CHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCeEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45788886 444 35689999999999999999999863
No 168
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=52.20 E-value=15 Score=33.35 Aligned_cols=40 Identities=25% Similarity=0.196 Sum_probs=31.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
|||+++-.++.|- .+|..|++.||+|+++.... .+.+.+.
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~-~~~i~~~ 42 (320)
T 3i83_A 3 LNILVIGTGAIGS-----FYGALLAKTGHCVSVVSRSD-YETVKAK 42 (320)
T ss_dssp CEEEEESCCHHHH-----HHHHHHHHTTCEEEEECSTT-HHHHHHH
T ss_pred CEEEEECcCHHHH-----HHHHHHHhCCCeEEEEeCCh-HHHHHhC
Confidence 6999997776663 67889999999999999876 4666653
No 169
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=52.16 E-value=1.2e+02 Score=26.48 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcCCCccChH-H-HHHHHHHHHHCCCEEEEEE
Q 012212 1 MSRQPHVLVIPYPAQGHVA-P-LMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~-p-~~~LA~~L~~rGH~Vt~~~ 39 (468)
|++..+|+++.......+. . ...+-+++.++|+++.+..
T Consensus 1 ~s~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 41 (305)
T 3g1w_A 1 MSLNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG 41 (305)
T ss_dssp ----CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 7778889877665554443 2 4466677778899998854
No 170
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=52.03 E-value=67 Score=29.43 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=34.6
Q ss_pred CEEEEE-cCCCccChHHHHHHHHHHH--HCCCEEEEEECCcchHHH
Q 012212 5 PHVLVI-PYPAQGHVAPLMKLATKIA--ERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~-~~~~~GH~~p~~~LA~~L~--~rGH~Vt~~~~~~~~~~i 47 (468)
++|+|+ .-+|.|-..-...||..|+ ++|++|.++..+.....-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChH
Confidence 466655 5567799999999999999 899999999998644333
No 171
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=51.77 E-value=16 Score=37.68 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=75.0
Q ss_pred cccChHHHhcCCCCCceeeccCchhHHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccC----CCccCHHHHH
Q 012212 338 EWAPQEKVLGHSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADE----NGIITRQEIQ 413 (468)
Q Consensus 338 ~~~p~~~ll~~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~----~~~~t~~~l~ 413 (468)
++.+-.++|..+++ +||= =...+.|.+..++|+|....-.|+..+- . -|...+..+ .-..|.++|.
T Consensus 605 ~~~di~~ll~~aD~--lITD-ySSv~fD~~~l~kPiif~~~D~~~Y~~~----~---rg~y~d~~~~~pg~~~~~~~eL~ 674 (729)
T 3l7i_A 605 NYNDVSELFLISDC--LITD-YSSVMFDYGILKRPQFFFAYDIDKYDKG----L---RGFYMNYMEDLPGPIYTEPYGLA 674 (729)
T ss_dssp TCSCHHHHHHTCSE--EEES-SCTHHHHHGGGCCCEEEECTTTTTTTSS----C---CSBSSCTTSSSSSCEESSHHHHH
T ss_pred CCcCHHHHHHHhCE--EEee-chHHHHhHHhhCCCEEEecCCHHHHhhc----c---CCcccChhHhCCCCeECCHHHHH
Confidence 55566788855544 9997 4567899999999999987766665431 1 122332211 0125788999
Q ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 414 RKVLTLLK-NDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 414 ~ai~~~l~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
++|..... +.+|+++.++..+++... .+|.++.+.++.+++....-.
T Consensus 675 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~dg~as~ri~~~i~~~~~~~~ 722 (729)
T 3l7i_A 675 KELKNLDKVQQQYQEKIDAFYDRFCSV-DNGKASQYIGDLIHKDIKEQL 722 (729)
T ss_dssp HHHTTHHHHHHHTHHHHHHHHHHHSTT-CCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhccchhHHHHHHHHHHHhCCc-cCChHHHHHHHHHHhcCcCcc
Confidence 99988775 356888888888888763 456666666666666555433
No 172
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=51.36 E-value=25 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++||||+|+-.+..+ ....++|.++||+|..+.+.+
T Consensus 2 ~~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~p 37 (317)
T 3rfo_A 2 NAMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQP 37 (317)
T ss_dssp CTTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCC
T ss_pred CCceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 478999999766543 355678888999998777654
No 173
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=51.10 E-value=31 Score=29.79 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCc-----------cChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQ-----------GHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~-----------GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+|||++..... -...=+......|.+.|++|+++++..
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 578998765421 134556777888889999999999754
No 174
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=51.02 E-value=13 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred CCceEEEecCCcc--cHHHHHHH---hCCceEEEc
Q 012212 110 EPIRCVIADVTVG--SALEVAES---MGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~---lgiP~v~~~ 139 (468)
.+||+||.|..-+ .|..+++. .++|+|+++
T Consensus 52 ~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 52 GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 4699999998766 45555544 488877654
No 175
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=50.73 E-value=21 Score=26.43 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=29.8
Q ss_pred CEEEEE-cCC--CccChHHHHHHHHHHHHC-CC-EEEEEECCcchHHH
Q 012212 5 PHVLVI-PYP--AQGHVAPLMKLATKIAER-AI-KVTVVNTQFIHKKI 47 (468)
Q Consensus 5 ~~Il~~-~~~--~~GH~~p~~~LA~~L~~r-GH-~Vt~~~~~~~~~~i 47 (468)
+|++++ ..+ +.......+.+|..+.+. || +|+++-........
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~ 49 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAG 49 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHH
Confidence 456544 333 234456678899999998 99 99999887655444
No 176
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=50.73 E-value=14 Score=31.75 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|||.|+-.+..|- .||+.|.++||+|+.+..+
T Consensus 5 ~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSSG
T ss_pred CCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecCH
Confidence 468999998887764 6899999999999987763
No 177
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=50.34 E-value=25 Score=26.90 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=28.4
Q ss_pred EEEE-EcCCCcc--ChHHHHHHHHHHHHCCCEE-EEEECCcchHH
Q 012212 6 HVLV-IPYPAQG--HVAPLMKLATKIAERAIKV-TVVNTQFIHKK 46 (468)
Q Consensus 6 ~Il~-~~~~~~G--H~~p~~~LA~~L~~rGH~V-t~~~~~~~~~~ 46 (468)
|+++ +..+-+| .....+.+|.++.+.||+| +++-.......
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV~~ 46 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVNN 46 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHHHH
Confidence 5553 3444444 3456788899999999999 88887665443
No 178
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=50.01 E-value=12 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
||.|+-.+-.|. ++|+.|.++||+|+++-
T Consensus 7 kIgfIGLG~MG~-----~mA~~L~~~G~~V~v~d 35 (297)
T 4gbj_A 7 KIAFLGLGNLGT-----PIAEILLEAGYELVVWN 35 (297)
T ss_dssp EEEEECCSTTHH-----HHHHHHHHTTCEEEEC-
T ss_pred cEEEEecHHHHH-----HHHHHHHHCCCeEEEEe
Confidence 899998877774 79999999999999864
No 179
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=50.00 E-value=14 Score=33.31 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCCccChH-HHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVA-PLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~-p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|..|+||+++.-+..++.. ....+.+.|.++|++|.+...
T Consensus 1 m~~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp ----CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 6667899999888877654 477889999999999987654
No 180
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=49.87 E-value=22 Score=27.73 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCccChHHH-HHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPL-MKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~-~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+||+++-....|+..-+ ..|++.|.++|++|.++....
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 357776655567877654 346777888899999987654
No 181
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=49.80 E-value=7.3 Score=35.19 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHHC-----C-CEEEEEEC
Q 012212 1 MSR-QPHVLVIPYPAQGHVAPLMKLATKIAER-----A-IKVTVVNT 40 (468)
Q Consensus 1 m~~-~~~Il~~~~~~~GH~~p~~~LA~~L~~r-----G-H~Vt~~~~ 40 (468)
|+. +|||.|+-.+..|. .+|..|.++ | |+|+++..
T Consensus 4 m~~~~m~I~iiG~G~mG~-----~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGG-----YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp ---CCEEEEEECCSHHHH-----HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCCEEEEECcCHHHH-----HHHHHHHhCccccCCCCCEEEEEc
Confidence 553 47999996666653 668888888 9 99999976
No 182
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=49.80 E-value=13 Score=32.56 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 2 SRQPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 2 ~~~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
.+|++++.+ .-+|.|=..-...||..|+++|++|.++=.+...
T Consensus 15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345555544 3446699999999999999999999998876554
No 183
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=49.66 E-value=72 Score=31.00 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=35.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
..|+++..++.|-..-+..||..|.++|++|.+++.+.+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 45778888888999999999999999999999999876543
No 184
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=49.49 E-value=22 Score=29.69 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCccChHHHH-HHHHHHHHCCCEEEEEECCc
Q 012212 2 SRQPHVLVIPYPAQGHVAPLM-KLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~-~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+|+||+++-....|+..-+. .+++.|.+.|++|.++.-..
T Consensus 4 ~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 4 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp -CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 467899877665578776544 45677777899998887543
No 185
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=49.47 E-value=27 Score=26.86 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=32.1
Q ss_pred CCEEEEEcCCC---ccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 4 QPHVLVIPYPA---QGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 4 ~~~Il~~~~~~---~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
++|++++...+ .......+.+|...+..||+|+++-.......+
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l 61 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLL 61 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHH
Confidence 46777554433 456677888899999999999998887655544
No 186
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=49.41 E-value=1.1e+02 Score=25.01 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
|.|-|-+||.. +-...++....++..+..+-+.+... ...|+.+.+.. -+ ...-.++++
T Consensus 14 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa------HR~p~~l~~~~----------~~---a~~~g~~Vi 72 (183)
T 1o4v_A 14 PRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSA------HRTPDRMFEYA----------KN---AEERGIEVI 72 (183)
T ss_dssp CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCT------TTCHHHHHHHH----------HH---TTTTTCCEE
T ss_pred CeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEcc------cCCHHHHHHHH----------HH---HHhCCCcEE
Confidence 56778788864 66777888889998888766666533 45555443211 00 001123346
Q ss_pred eeccCc----hhHHHhhhcCCceeccccccc--hhhhHH-HHHHHh--hceeE-eeccCCCccCHHHHHHHHHHHhcChH
Q 012212 355 ISHCGW----NSTMEGLSMGVPFLCWPYFSD--QYQNRN-YICEAW--KIGLQ-FFADENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 355 I~hGG~----~s~~eal~~GvP~v~~P~~~D--Q~~na~-rv~~~l--G~g~~-l~~~~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
|.=+|. .++..++ .-+|+|.+|.... .-..+. -+.. + |+.+. +..+ +-.++-.++..|. -+.|++
T Consensus 73 Ia~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivq-mP~GvpVatV~Id--~~~nAa~lAaqIl-a~~d~~ 147 (183)
T 1o4v_A 73 IAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIVQ-MPGGVPVATVAIN--NAKNAGILAASIL-GIKYPE 147 (183)
T ss_dssp EEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHT-CCTTCCCEECCTT--CHHHHHHHHHHHH-HTTCHH
T ss_pred EEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhc-CCCCCeeEEEecC--CchHHHHHHHHHH-hcCCHH
Confidence 665553 3555444 6788888887432 222221 1222 3 43211 1111 1255666666664 457888
Q ss_pred HHHHHHHHHHHHHHH
Q 012212 425 IRSNSLKLKEVARKS 439 (468)
Q Consensus 425 ~r~~a~~l~~~~~~~ 439 (468)
++++.+..++.+...
T Consensus 148 l~~kL~~~r~~~~~~ 162 (183)
T 1o4v_A 148 IARKVKEYKERMKRE 162 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887775
No 187
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=49.38 E-value=35 Score=22.93 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=30.9
Q ss_pred CccCHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHH
Q 012212 405 GIITRQEIQRKVLTLLKNDD-IRSNSLKLKEVARKSL-L-GGGSSFRNFESFISDIK 458 (468)
Q Consensus 405 ~~~t~~~l~~ai~~~l~~~~-~r~~a~~l~~~~~~~~-~-~~g~~~~~~~~~~~~~~ 458 (468)
+..|.++|.++|+++|.+.+ ..--.+++++.+...+ . +-.+....|...|.+..
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L 66 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELI 66 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHH
Confidence 34899999999999998765 1111233444443332 1 12333566777765543
No 188
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=49.37 E-value=13 Score=31.38 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~~ 49 (468)
.+||++...++.+=+ -...|.+.|.+ +|++|.++.++.....+..
T Consensus 19 ~k~IllgvTGsiaa~-k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~ 64 (206)
T 1qzu_A 19 KFHVLVGVTGSVAAL-KLPLLVSKLLDIPGLEVAVVTTERAKHFYSP 64 (206)
T ss_dssp SEEEEEEECSSGGGG-THHHHHHHHC---CEEEEEEECTGGGGSSCG
T ss_pred CCEEEEEEeChHHHH-HHHHHHHHHhcccCCEEEEEECHhHHHHhCH
Confidence 468887777776644 45899999999 8999999999887766643
No 189
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=49.20 E-value=28 Score=25.87 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCccChHH-HHHHHHHHHHCCCEEEEEEC
Q 012212 3 RQPHVLVIPYPAQGHVAP-LMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p-~~~LA~~L~~rGH~Vt~~~~ 40 (468)
+++||+++|..|.|.-.- ...|-+.+.++|.++.+-..
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~ 58 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 58 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 467899999999999884 67888889899998755443
No 190
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=49.12 E-value=48 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=28.9
Q ss_pred eEEcccCh-HHHhc-CCCCCceeeccCchhHHHhhh---------cCCceecccc
Q 012212 335 KIVEWAPQ-EKVLG-HSSVACFISHCGWNSTMEGLS---------MGVPFLCWPY 378 (468)
Q Consensus 335 ~~~~~~p~-~~ll~-~~~~~~~I~hGG~~s~~eal~---------~GvP~v~~P~ 378 (468)
.+...++. ..++. .++ ..++--||.||+-|... +++|++++..
T Consensus 94 ~~~~~f~~Rk~~~~~~sd-a~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 94 RAVADMHQRKAEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp EEESSHHHHHHHHHHTCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred eecCCHHHHHHHHHHhCC-EEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 45566665 33443 343 45777899999988762 5999998864
No 191
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=49.04 E-value=91 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred ceEEEecCCcc-cHH----HHHHHhCCceEEEcc
Q 012212 112 IRCVIADVTVG-SAL----EVAESMGIARAAVVP 140 (468)
Q Consensus 112 pDlvi~D~~~~-~~~----~~A~~lgiP~v~~~~ 140 (468)
.|+||++.-.. ++. ..|..+|+|++.+..
T Consensus 78 aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~ 111 (165)
T 2khz_A 78 ADVVVAEVTQPSLGVGYELGRAVALGKPILCLFR 111 (165)
T ss_dssp CSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEc
Confidence 79999876433 222 578999999999864
No 192
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=48.58 E-value=24 Score=23.59 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 012212 409 RQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKM 459 (468)
Q Consensus 409 ~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (468)
.+++.+...+.|.|++.+..-..=+..|... .|-....|+++++....
T Consensus 14 Re~li~~Av~FLqdp~V~~sp~~~K~~FL~s---KGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 14 REPLIATAVKFLQNSRVRQSPLATRRAFLKK---KGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp CHHHHHHHHHHHCSTTGGGSCHHHHHHHHHH---TTCCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhCChhhhhCCHHHHHHHHHH---cCCCHHHHHHHHHHccC
Confidence 4455555558999999888887777788776 88888999998877543
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=48.55 E-value=65 Score=30.73 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcchHHHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~~~i~ 48 (468)
-+++...|+.|-..-+..+|..++. .|..|.|++..-....+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~ 248 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLV 248 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 4567788899999999999999886 699999999886654443
No 194
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=48.51 E-value=30 Score=31.92 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=20.6
Q ss_pred CCCCCceeeccCchhH---HHhhhcCCceecc
Q 012212 348 HSSVACFISHCGWNST---MEGLSMGVPFLCW 376 (468)
Q Consensus 348 ~~~~~~~I~hGG~~s~---~eal~~GvP~v~~ 376 (468)
.|++ +|++||+-++ ..|-..|+|+++.
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 4555 9999998764 5567789999863
No 195
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=48.22 E-value=15 Score=32.97 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+|+||.|+-.+..|. .+|+.|.++||+|+++...
T Consensus 2 ~m~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeecHHHH-----HHHHHHHhCCCeEEEEcCC
Confidence 578999997666654 7789999999999988653
No 196
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=48.22 E-value=16 Score=33.12 Aligned_cols=34 Identities=0% Similarity=0.090 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+|||+++..+ ....+++++.++||+|.++.....
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~~ 35 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDEGFETIAFGSSKV 35 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHTTCCEEEESCGGG
T ss_pred ceEEEEECCh------hHHHHHHHHHhCCCEEEEEECCCC
Confidence 4699998765 467899999999999999887643
No 197
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=48.16 E-value=26 Score=22.17 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 012212 409 RQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFIS 455 (468)
Q Consensus 409 ~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (468)
.+++.+.-.+.|.|++.++.-..=+..|... .|-....|++.++
T Consensus 9 Re~li~~Av~FL~dp~V~~sp~~~K~~FL~s---KGLt~~EI~~Al~ 52 (54)
T 3ff5_A 9 REPLIATAVKFLQNSRVRQSPLATRRAFLKK---KGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHHCTTGGGSCHHHHHHHHHH---TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 4455555558999999888887777788776 8888888888764
No 198
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=47.64 E-value=13 Score=35.97 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~ 41 (468)
|+++|||.++-.+..| ..+|..|+++ ||+|+++...
T Consensus 2 M~~~mkI~VIG~G~mG-----~~lA~~La~~g~G~~V~~~d~~ 39 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVG-----GPTCSVIAHMCPEIRVTVVDVN 39 (467)
T ss_dssp CCCCCEEEEECCSTTH-----HHHHHHHHHHCTTSEEEEECSC
T ss_pred CCCccEEEEECCCHHH-----HHHHHHHHhcCCCCEEEEEECC
Confidence 7778999999665555 3678888888 8999988653
No 199
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=47.44 E-value=22 Score=29.66 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=28.5
Q ss_pred CCCCCceeeccCchhHHHhhhcCCceeccccccchhhhH
Q 012212 348 HSSVACFISHCGWNSTMEGLSMGVPFLCWPYFSDQYQNR 386 (468)
Q Consensus 348 ~~~~~~~I~hGG~~s~~eal~~GvP~v~~P~~~DQ~~na 386 (468)
...++++|+.||.......- .++|+|-++..+---..|
T Consensus 49 ~~~~dVIISRGgta~~lr~~-~~iPVV~I~~s~~Dil~a 86 (196)
T 2q5c_A 49 QDEVDAIISRGATSDYIKKS-VSIPSISIKVTRFDTMRA 86 (196)
T ss_dssp TTTCSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHH
T ss_pred cCCCeEEEECChHHHHHHHh-CCCCEEEEcCCHhHHHHH
Confidence 35567799999999998876 579999999754333333
No 200
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=47.39 E-value=1.1e+02 Score=27.56 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=58.1
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
+..|+.|.+.. ..+.++.+. +..++.+.... ......+.++. ++ .-+-...+++..++++++
T Consensus 7 vgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~~------~~~~~~~a~~~--g~--~~~~~~~~~l~~~~~D~V 69 (344)
T 3euw_A 7 IALFGAGRIGH-------VHAANIAANPDLELVVIADPF------IEGAQRLAEAN--GA--EAVASPDEVFARDDIDGI 69 (344)
T ss_dssp EEEECCSHHHH-------HHHHHHHHCTTEEEEEEECSS------HHHHHHHHHTT--TC--EEESSHHHHTTCSCCCEE
T ss_pred EEEECCcHHHH-------HHHHHHHhCCCcEEEEEECCC------HHHHHHHHHHc--CC--ceeCCHHHHhcCCCCCEE
Confidence 77888887642 344555554 34455455433 00001111111 12 234567888987777778
Q ss_pred eeccCch----hHHHhhhcCCceec-cccc--cchhh-hHHHHHHHhhceeEeec
Q 012212 355 ISHCGWN----STMEGLSMGVPFLC-WPYF--SDQYQ-NRNYICEAWKIGLQFFA 401 (468)
Q Consensus 355 I~hGG~~----s~~eal~~GvP~v~-~P~~--~DQ~~-na~rv~~~lG~g~~l~~ 401 (468)
|----.. -+.+|+.+|+++++ -|+. .++-. -...++++ |+-+.+..
T Consensus 70 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~-g~~~~v~~ 123 (344)
T 3euw_A 70 VIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDG-ASKVMLGF 123 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGG-GGGEEECC
T ss_pred EEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhc-CCeEEecc
Confidence 8655443 47788999999886 3543 33333 23334443 66555543
No 201
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=47.18 E-value=25 Score=25.98 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
.|||+++|..|.|+-.-...|-+.+.++|.++.+-..
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~ 40 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAI 40 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEE
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4789999999998887777888888899987665444
No 202
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=46.99 E-value=18 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.|||+++- .|.+-. .+|+.|.++||+|+++...
T Consensus 4 ~m~i~IiG---~G~iG~--~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAG---IGRVGY--TLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEEC---CSHHHH--HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC---CCHHHH--HHHHHHHhCCCeEEEEECC
Confidence 47888883 355543 5789999999999998764
No 203
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=46.44 E-value=54 Score=25.25 Aligned_cols=59 Identities=5% Similarity=-0.045 Sum_probs=37.2
Q ss_pred cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012212 369 MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLK 433 (468)
Q Consensus 369 ~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~ 433 (468)
..+|+|++.-..+ ........+. |+--.+.+- ++.++|..+|++++....++...+++.
T Consensus 74 ~~~pii~ls~~~~-~~~~~~~~~~-g~~~~l~kP----~~~~~L~~~i~~~~~~~~~~~~~~~~~ 132 (155)
T 1qkk_A 74 PDLPMILVTGHGD-IPMAVQAIQD-GAYDFIAKP----FAADRLVQSARRAEEKRRLVMENRSLR 132 (155)
T ss_dssp TTSCEEEEECGGG-HHHHHHHHHT-TCCEEEESS----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-hHHHHHHHhc-CCCeEEeCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788887754433 3344444553 775555543 789999999999987555444433433
No 204
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=45.97 E-value=24 Score=31.97 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 30 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 30 YARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 35799999776666 57899999999999988654
No 205
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=45.70 E-value=21 Score=31.20 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=36.4
Q ss_pred CCCEEEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 3 RQPHVLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 3 ~~~~Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
.+||.+|++.+ +.|--.-...|+..|..||++||..--+++.+.-
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD 68 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINID 68 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecC
Confidence 45788888766 5577788999999999999999999887765443
No 206
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=45.62 E-value=23 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=30.7
Q ss_pred CEEE-EE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVL-VI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il-~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
+|++ |. +-++.|-..-...||..|+++|++|.++-.+..
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 3444 44 344669999999999999999999999987653
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.47 E-value=1.5e+02 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=33.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.|+++..++.|-..-+..||..+..+|++|.++..+.+..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 3456666788999999999999999999999999886543
No 208
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=45.38 E-value=32 Score=26.67 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=30.7
Q ss_pred CCC-CCEEEEE-cCCCccChHH--HHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 1 MSR-QPHVLVI-PYPAQGHVAP--LMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 1 m~~-~~~Il~~-~~~~~GH~~p--~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
|+. |+|++|+ ..+-+|+... .+.+|.++...||+|+++-........
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DGV~~~ 51 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQL 51 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGGG
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHH
Confidence 443 4467744 4445576554 466699999999999999887655444
No 209
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=45.22 E-value=19 Score=31.42 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=31.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+.|.|..-+|.|-..-...||..|+++|++|.++=.+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 35667667778999999999999999999999986654
No 210
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=44.98 E-value=77 Score=28.91 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=67.0
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCC
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL--QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVA 352 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~ 352 (468)
.+.+|+.|.+.. ..+.++.+. +.+++.+.... ......+.++. ++ .-+-...+++..++++
T Consensus 15 rvgiiG~G~~g~-------~~~~~l~~~~~~~~lvav~d~~------~~~~~~~~~~~--~~--~~~~~~~~ll~~~~~D 77 (354)
T 3q2i_A 15 RFALVGCGRIAN-------NHFGALEKHADRAELIDVCDID------PAALKAAVERT--GA--RGHASLTDMLAQTDAD 77 (354)
T ss_dssp EEEEECCSTTHH-------HHHHHHHHTTTTEEEEEEECSS------HHHHHHHHHHH--CC--EEESCHHHHHHHCCCS
T ss_pred eEEEEcCcHHHH-------HHHHHHHhCCCCeEEEEEEcCC------HHHHHHHHHHc--CC--ceeCCHHHHhcCCCCC
Confidence 388888888652 344556555 34555555433 00011121221 22 3445678888877777
Q ss_pred ceeeccCc----hhHHHhhhcCCceec-cccc--cchh-hhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 353 CFISHCGW----NSTMEGLSMGVPFLC-WPYF--SDQY-QNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 353 ~~I~hGG~----~s~~eal~~GvP~v~-~P~~--~DQ~-~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
+++----. .-+.+|+.+|+++++ -|+. .++- ...+.+++. |+-+.+.... .+.+. .+.+++++.+
T Consensus 78 ~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~-g~~~~v~~~~--r~~p~--~~~~k~~i~~ 150 (354)
T 3q2i_A 78 IVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA-KKHLFVVKQN--RRNAT--LQLLKRAMQE 150 (354)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH-TCCEEECCGG--GGSHH--HHHHHHHHHT
T ss_pred EEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh-CCeEEEEEcc--cCCHH--HHHHHHHHhc
Confidence 77754333 346789999999986 3543 3333 333444554 7666554321 14442 3455555543
No 211
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=44.82 E-value=28 Score=27.94 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCc---cChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQ---GHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~---GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
..+|+++|.-|. --.++...|++.|.++|.+|.|+..|-
T Consensus 30 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 71 (186)
T 2bru_C 30 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 71 (186)
T ss_dssp CSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 357888863322 135689999999999999999999863
No 212
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=44.62 E-value=33 Score=28.10 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+. ++|+++- +.|-+ -..|++.|.++||+|+.++-..
T Consensus 1 M~~-~~ilVtG--atG~i--G~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 1 MAV-KKIAIFG--ATGQT--GLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CCC-CEEEEES--TTSHH--HHHHHHHHHHTTCEEEEEESCG
T ss_pred CCC-CEEEEEc--CCcHH--HHHHHHHHHHCCCeEEEEEeCh
Confidence 544 6777763 33433 3578999999999999988653
No 213
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=44.62 E-value=80 Score=28.93 Aligned_cols=108 Identities=14% Similarity=0.033 Sum_probs=58.6
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCcccCCchhHHHHhCCCc-eEEcccChHHHhcCCCCCc
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQ-KPFLWVIRQDFMNGSRAKFPDGFIERVSNRG-KIVEWAPQEKVLGHSSVAC 353 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv-~~~~~~p~~~ll~~~~~~~ 353 (468)
+..|+.|.+.. ...+.++.+.+ .+++.+.... ..-.+...+.. ...-+-...++|..+++++
T Consensus 8 igiIG~G~~g~------~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~ 71 (359)
T 3m2t_A 8 VGLVGIGAQMQ------ENLLPSLLQMQDIRIVAACDSD----------LERARRVHRFISDIPVLDNVPAMLNQVPLDA 71 (359)
T ss_dssp EEEECCSHHHH------HTHHHHHHTCTTEEEEEEECSS----------HHHHGGGGGTSCSCCEESSHHHHHHHSCCSE
T ss_pred EEEECCCHHHH------HHHHHHHHhCCCcEEEEEEcCC----------HHHHHHHHHhcCCCcccCCHHHHhcCCCCCE
Confidence 77888877532 12455666553 3455455433 11111111111 1112346788998888888
Q ss_pred eeeccCch----hHHHhhhcCCceec-cccc--cchhh-hHHHHHHHhhceeEee
Q 012212 354 FISHCGWN----STMEGLSMGVPFLC-WPYF--SDQYQ-NRNYICEAWKIGLQFF 400 (468)
Q Consensus 354 ~I~hGG~~----s~~eal~~GvP~v~-~P~~--~DQ~~-na~rv~~~lG~g~~l~ 400 (468)
++-.--.. -+.+|+.+|+++++ -|+. .++-. -.+.++++ |+-+.+.
T Consensus 72 V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~-g~~~~v~ 125 (359)
T 3m2t_A 72 VVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRS-DVVSGVG 125 (359)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH-TCCEEEC
T ss_pred EEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHc-CCEEEEE
Confidence 88665543 36789999999876 3543 23333 33344453 6655554
No 214
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=44.62 E-value=24 Score=29.87 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=29.1
Q ss_pred ceEEcccCh-HHHh-cCCCCCceeeccCchhHHHhh---------hcCCceecccc
Q 012212 334 GKIVEWAPQ-EKVL-GHSSVACFISHCGWNSTMEGL---------SMGVPFLCWPY 378 (468)
Q Consensus 334 v~~~~~~p~-~~ll-~~~~~~~~I~hGG~~s~~eal---------~~GvP~v~~P~ 378 (468)
+.++..++. ..++ .+++ ..++--||.||+-|.. .+++|++++..
T Consensus 89 ~~~~~~~~~Rk~~~~~~sd-a~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 89 VRVVADMHERKAAMAQEAE-AFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp EEEESSHHHHHHHHHHHCS-EEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred ccccCCHHHHHHHHHHhCC-EEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 445555554 3333 3344 3567789999988776 57999998864
No 215
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=44.49 E-value=29 Score=29.41 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|..|.|.++++.++ |-+ -..+|+.|.++||+|+++...
T Consensus 1 M~~~~k~vlVtGas-ggi--G~~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 1 MEGMKGAVLITGAS-RGI--GEATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp ---CCCEEEESSTT-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCCEEEEECCC-cHH--HHHHHHHHHHCCCEEEEEECC
Confidence 65555666666443 322 357899999999999988764
No 216
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=44.45 E-value=1.2e+02 Score=24.39 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=77.3
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +-...++....++..+..+-+.+... +..|+.+. .|+-... ...++++|
T Consensus 9 ~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~Sa------HR~p~~~~----------~~~~~a~---~~g~~ViI 67 (174)
T 3lp6_A 9 RVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVSA------HRTPEAMF----------SYARGAA---ARGLEVII 67 (174)
T ss_dssp SEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTCHHHHH----------HHHHHHH---HHTCCEEE
T ss_pred eEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEECC------CCCHHHHH----------HHHHHHH---hCCCCEEE
Confidence 4666677764 56678888889998888776666543 45555442 1111100 01223477
Q ss_pred eccCc----hhHHHhhhcCCceeccccccch--hhhH-HHHHHHh--hceeE-eeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSDQ--YQNR-NYICEAW--KIGLQ-FFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~DQ--~~na-~rv~~~l--G~g~~-l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
.=+|. .++..++ .-+|+|.+|...-. -..+ .-+.. + |+.+. +..+ +-.++-.++..|. -+.|+++
T Consensus 68 a~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~daLlS~vq-mp~GvpVatV~I~--~~~nAa~lAa~Il-~~~d~~l 142 (174)
T 3lp6_A 68 AGAGGAAHLPGMVAAA-TPLPVIGVPVPLGRLDGLDSLLSIVQ-MPAGVPVATVSIG--GAGNAGLLAVRML-GAANPQL 142 (174)
T ss_dssp EEEESSCCHHHHHHHH-CSSCEEEEEECCSSGGGHHHHHHHHC-CCTTCCCEECCTT--CHHHHHHHHHHHH-HTTCHHH
T ss_pred EecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhh-CCCCCeeEEEEcC--cchHHHHHHHHHH-hCCCHHH
Confidence 76664 3555444 66899999975221 1111 11222 1 43221 1111 1255666666663 3468999
Q ss_pred HHHHHHHHHHHHHH
Q 012212 426 RSNSLKLKEVARKS 439 (468)
Q Consensus 426 r~~a~~l~~~~~~~ 439 (468)
+++.+..++++++.
T Consensus 143 ~~kl~~~r~~~~~~ 156 (174)
T 3lp6_A 143 RARIVAFQDRLADV 156 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888774
No 217
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=44.36 E-value=20 Score=32.05 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=27.5
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQG---HVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~G---H~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|||+++..+... .......++++|.++||+|.++...
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 689998866321 1233467999999999999998864
No 218
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=44.36 E-value=52 Score=27.01 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+++||+++-.++..- .-+....+.|.+.|++|++++...
T Consensus 21 ~~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 21 GLSKKIAVLITDEFED-SEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp TCCCEEEEECCTTBCT-HHHHHHHHHHHHTTCEEEEEESST
T ss_pred ccCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 4567999988776543 345567778888999999999864
No 219
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=44.30 E-value=14 Score=33.11 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++||.|+-.+..|+ .+|..|+++||+|+++...
T Consensus 14 ~~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 357899997766665 6889999999999988764
No 220
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.27 E-value=19 Score=31.50 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|.+|+.|++...+|.|-..-...|++.|.+.|+.+.+++.
T Consensus 1 M~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 7778888899999999999999999999889988876654
No 221
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=44.20 E-value=17 Score=32.20 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=36.9
Q ss_pred CCCceeeccCchhHHHhhhc------CCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 350 SVACFISHCGWNSTMEGLSM------GVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~------GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
.++++|.=||=||+.+++.. ++|++.+|.. .+|. ..+ +.++++.+++++++++
T Consensus 35 ~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G------------~lgf-----l~~---~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG------------HLGF-----YAD---WRPAEADKLVKLLAKG 93 (272)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS------------SCCS-----SCC---BCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC------------CCCc-----CCc---CCHHHHHHHHHHHHcC
Confidence 34669999999999998765 8899888631 0121 112 4577788888887764
No 222
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=44.00 E-value=88 Score=30.28 Aligned_cols=42 Identities=10% Similarity=-0.044 Sum_probs=35.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcchHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFIHKKII 48 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~~~~i~ 48 (468)
+++...|+.|-..-++.+|..++.+ |..|.+++.....+.+.
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~ 287 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETA 287 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHH
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 4577788999999999999999987 99999999987665443
No 223
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=43.96 E-value=18 Score=32.87 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~ 41 (468)
|+.|++|++.- +.|.+ -..|++.|.++ ||+|+.+.-.
T Consensus 1 Ms~m~~vlVTG--atG~i--G~~l~~~L~~~~~g~~V~~~~r~ 39 (348)
T 1oc2_A 1 MSQFKNIIVTG--GAGFI--GSNFVHYVYNNHPDVHVTVLDKL 39 (348)
T ss_dssp --CCSEEEEET--TTSHH--HHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCcCcEEEEeC--CccHH--HHHHHHHHHHhCCCCEEEEEeCC
Confidence 66677887774 33433 24688899988 8999998764
No 224
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=43.50 E-value=1.3e+02 Score=24.39 Aligned_cols=144 Identities=18% Similarity=0.179 Sum_probs=80.4
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCc
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVAC 353 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 353 (468)
+|.|-|-+||.. +-..+++..+.|++.+..+-..+... ...|+.+.+. +-. .....+++
T Consensus 22 kp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SA------HRtp~~l~~~----------~~~---a~~~g~~V 80 (181)
T 4b4k_A 22 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA------HRTPDYMFEY----------AET---ARERGLKV 80 (181)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTSHHHHHHH----------HHH---TTTTTCCE
T ss_pred CccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEcc------ccChHHHHHH----------HHH---HHhcCceE
Confidence 356888889875 55678889999999988776666543 4455544211 110 11122344
Q ss_pred eeeccCc----hhHHHhhhcCCceecccccc---chhhhHHHHHHHhhceeEeeccC---CCccCHHHHHHHHHHHhcCh
Q 012212 354 FISHCGW----NSTMEGLSMGVPFLCWPYFS---DQYQNRNYICEAWKIGLQFFADE---NGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 354 ~I~hGG~----~s~~eal~~GvP~v~~P~~~---DQ~~na~rv~~~lG~g~~l~~~~---~~~~t~~~l~~ai~~~l~~~ 423 (468)
+|.=.|. .++..+ ..-+|+|.+|... +-.+.-.-+.. +=-|+-+-.-. .+-.++--++..|- -+.|+
T Consensus 81 iIa~AG~aahLpGvvAa-~T~~PVIGVPv~s~~l~G~DsLlSivQ-MP~GvpVaTvaig~~ga~NAallA~qIL-a~~d~ 157 (181)
T 4b4k_A 81 IIAGAGGAAHLPGMVAA-KTNLPVIGVPVQSKALNGLDSLLSIVQ-MPGGVPVATVAIGKAGSTNAGLLAAQIL-GSFHD 157 (181)
T ss_dssp EEEEECSSCCHHHHHHT-TCCSCEEEEECCCTTTTTHHHHHHHHT-CCTTCCCEECCSSHHHHHHHHHHHHHHH-TTTCH
T ss_pred EEEeccccccchhhHHh-cCCCCEEEEecCCCCccchhhHHHHHh-CCCCCceEEEecCCccHHHHHHHHHHHH-ccCCH
Confidence 6665553 344444 4568999999754 33333333333 32343333221 01123333444442 35688
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 012212 424 DIRSNSLKLKEVARKSLL 441 (468)
Q Consensus 424 ~~r~~a~~l~~~~~~~~~ 441 (468)
+++++.+..++.+.+.+.
T Consensus 158 ~l~~kl~~~r~~~~~~v~ 175 (181)
T 4b4k_A 158 DIHDALELRREAIEKDVR 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888777533
No 225
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=43.39 E-value=46 Score=28.29 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCCCceEEEecCCccc-------HHHHHHHhCCceEEEcc
Q 012212 97 RDLIEKINQSNDCEPIRCVIADVTVGS-------ALEVAESMGIARAAVVP 140 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~D~~~~~-------~~~~A~~lgiP~v~~~~ 140 (468)
.-+++.+.+.. .+||+|++|..... +..+--.+++|+|.+.-
T Consensus 91 P~~l~al~~L~--~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 91 PLFLKAWEKLR--TKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHHHTTCC--SCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred HHHHHHHHhcC--CCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 33444444333 56999999997663 33455566999998763
No 226
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=43.36 E-value=18 Score=31.05 Aligned_cols=23 Identities=9% Similarity=0.067 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCc
Q 012212 20 PLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 20 p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.-.++|++|.++|++|++++.+.
T Consensus 31 mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 31 LGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 34678999999999999999865
No 227
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=43.20 E-value=13 Score=33.48 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCCceeeccCchhHHHhhhc----CCceeccc
Q 012212 350 SVACFISHCGWNSTMEGLSM----GVPFLCWP 377 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal~~----GvP~v~~P 377 (468)
.++++|.-||=||+.+++.. ++|++.++
T Consensus 75 ~~d~vi~~GGDGT~l~a~~~~~~~~~pvlgi~ 106 (307)
T 1u0t_A 75 GCELVLVLGGDGTFLRAAELARNASIPVLGVN 106 (307)
T ss_dssp -CCCEEEEECHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHhccCCCCEEEEe
Confidence 34559999999999999854 89998886
No 228
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=43.11 E-value=12 Score=33.97 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCC----CEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERA----IKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG----H~Vt~~~~~~ 42 (468)
|+++|||.|+-.+..| ..+|..|.+.| |+|+++....
T Consensus 19 ~~~~mkI~iIG~G~mG-----~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLA-----FALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp ---CCCEEEESCSHHH-----HHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred ccCCCEEEEECCCHHH-----HHHHHHHHHCCCCCcceEEEECCCc
Confidence 4566789999765554 36788899999 9999887654
No 229
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=43.11 E-value=18 Score=32.76 Aligned_cols=24 Identities=8% Similarity=-0.150 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCEEEEEECCcc
Q 012212 20 PLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 20 p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.-.+||+++.++|++|+|++.+..
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTS
T ss_pred HHHHHHHHHHHCCCEEEEEecCCC
Confidence 567899999999999999998754
No 230
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=43.01 E-value=26 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++||++.- + |- --..|++.|.++||+|+.++-..
T Consensus 2 ~~~~ilVtG--a-G~--iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 2 SLSKILIAG--C-GD--LGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCCEEEEC--C-SH--HHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCcEEEEC--C-CH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 356888773 3 53 34578999999999999998653
No 231
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=43.00 E-value=1.5e+02 Score=24.92 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=55.2
Q ss_pred CC-CCCEEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEECCcch----HHHHHhhhhhccCCCCCeEEEEcCCCCCCC
Q 012212 1 MS-RQPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNTQFIH----KKIIASLQEKAEDSSSQIKLVTIPDGLELQ 74 (468)
Q Consensus 1 m~-~~~~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~~~~~----~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 74 (468)
|+ +++||+++.++..+ -+.+|.++..+ .+++|..+.+.... +..++ .++.+..++...
T Consensus 1 ~~~~~~riavl~SG~Gs---nl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~----------~gIp~~~~~~~~--- 64 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGT---NLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQ----------ADIPTHIIPHEE--- 64 (215)
T ss_dssp ---CCEEEEEEESSCCH---HHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHH----------TTCCEEECCGGG---
T ss_pred CCCCCcEEEEEEeCCcH---HHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHH----------cCCCEEEeCccc---
Confidence 55 56789877655433 34455555544 36888877764321 23333 456666554210
Q ss_pred cCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-cHHHHHHHhCCceEEEccc
Q 012212 75 AADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-SALEVAESMGIARAAVVPF 141 (468)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (468)
..+. .... .++++.+++ .+||+||+=.+.. -...+-......++-++++
T Consensus 65 ---~~~r--------~~~d---~~~~~~l~~----~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 65 ---FPSR--------TDFE---STLQKTIDH----YDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp ---SSSH--------HHHH---HHHHHHHHT----TCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ---cCch--------hHhH---HHHHHHHHh----cCCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 0000 0111 234444444 4599999976533 3444555555566766653
No 232
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=42.82 E-value=36 Score=29.16 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=23.7
Q ss_pred CCceEEEecCCcc-------cHHHHHHHhCCceEEEcc
Q 012212 110 EPIRCVIADVTVG-------SALEVAESMGIARAAVVP 140 (468)
Q Consensus 110 ~~pDlvi~D~~~~-------~~~~~A~~lgiP~v~~~~ 140 (468)
.+||+|++|.... -+..+--.+++|.|.+.-
T Consensus 106 ~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAK 143 (237)
T 3goc_A 106 CPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAK 143 (237)
T ss_dssp SCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEES
T ss_pred CCCCEEEEeCceeecCCCcchhheeeeecCCCEEeeec
Confidence 5699999998755 344566778999998763
No 233
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=42.81 E-value=48 Score=27.75 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=31.7
Q ss_pred hhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 012212 264 CLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLW 308 (468)
Q Consensus 264 l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~ 308 (468)
+.+|+.+...+.++||..+|......+.+..+.++++++|..+.+
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~ 62 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE 62 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 344554333456999988876544567889999999999986543
No 234
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=42.63 E-value=22 Score=34.32 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHC-CC-EEEEEECCcc
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAER-AI-KVTVVNTQFI 43 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH-~Vt~~~~~~~ 43 (468)
+++|||.++-.+..| ..+|..|+++ || +|+++.....
T Consensus 16 ~~~mkIaVIGlG~mG-----~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLGMGYVG-----IPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEECCSTTH-----HHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCCEEEEECcCHHH-----HHHHHHHHHhCCCCeEEEEECChh
Confidence 567899999777666 4789999999 99 9999876644
No 235
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=42.34 E-value=46 Score=24.44 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=23.4
Q ss_pred CCceEEEecCCcc--cHHHHHHHh-------CCceEEEcccch
Q 012212 110 EPIRCVIADVTVG--SALEVAESM-------GIARAAVVPFGP 143 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~l-------giP~v~~~~~~~ 143 (468)
.+||+||.|...+ .+..+++.+ ++|.++++....
T Consensus 45 ~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCS
T ss_pred cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCc
Confidence 4599999997655 455555543 588888775443
No 236
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.11 E-value=1.6e+02 Score=24.93 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=73.4
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh-CCCceEEcccChHHHhcCCCC
Q 012212 273 IRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV-SNRGKIVEWAPQEKVLGHSSV 351 (468)
Q Consensus 273 ~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~ 351 (468)
.++++.|+.|.++ ...+..|.+.+.++.++-.. ..+.+.+.. ..++.+...--....|. .+
T Consensus 31 gk~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~---------~~~~l~~l~~~~~i~~i~~~~~~~dL~--~a 92 (223)
T 3dfz_A 31 GRSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPT---------VSAEINEWEAKGQLRVKRKKVGEEDLL--NV 92 (223)
T ss_dssp TCCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSS---------CCHHHHHHHHTTSCEEECSCCCGGGSS--SC
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCC---------CCHHHHHHHHcCCcEEEECCCCHhHhC--CC
Confidence 3458888776543 34456666678877665432 223332222 24455553222334464 44
Q ss_pred CceeeccCchhHHHhhh----cCCceeccccccchhhhHH-----HHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 352 ACFISHCGWNSTMEGLS----MGVPFLCWPYFSDQYQNRN-----YICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 352 ~~~I~hGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~-----rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
+++|.--|.-.+.+.++ .|+|+-++ |.+..+. .+.+. ++-+.+......-.-+..|++.|++.|..
T Consensus 93 dLVIaAT~d~~~N~~I~~~ak~gi~VNvv----D~p~~~~f~~Paiv~rg-~l~iaIST~G~sP~la~~iR~~ie~~lp~ 167 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQHIKNDQLVNMA----SSFSDGNIQIPAQFSRG-RLSLAISTDGASPLLTKRIKEDLSSNYDE 167 (223)
T ss_dssp SEEEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEEET-TEEEEEECTTSCHHHHHHHHHHHHHHSCT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCEEEEe----CCcccCeEEEeeEEEeC-CEEEEEECCCCCcHHHHHHHHHHHHHccH
Confidence 55888888755554444 46676444 4444332 22232 44444544331112256677777777743
Q ss_pred --hHHHHHHHHHHHHHHHH
Q 012212 423 --DDIRSNSLKLKEVARKS 439 (468)
Q Consensus 423 --~~~r~~a~~l~~~~~~~ 439 (468)
..+-+.+.+++++++..
T Consensus 168 ~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 168 SYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 23666666677676663
No 237
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=41.73 E-value=37 Score=33.64 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHh
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIAS 50 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~ 50 (468)
..+|++.+.++..|-....-++..|..+|++|+.+...-..+.+...
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~a 144 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRT 144 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999887666655443
No 238
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=41.62 E-value=45 Score=22.66 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=31.3
Q ss_pred hcCCceeccccccchhhhHHH---HHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 368 SMGVPFLCWPYFSDQYQNRNY---ICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 368 ~~GvP~v~~P~~~DQ~~na~r---v~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
-+|+|++++--.+-|.+--.. ..+. |+...+-.. ..++++.+.+++.|.
T Consensus 49 dngkplvvfvngasqndvnefqneakke-gvsydvlks----tdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKE-GVSYDVLKS----TDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHH-TCEEEEEEC----CCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhc-Ccchhhhcc----CCHHHHHHHHHHHHH
Confidence 478899888777666553322 2232 555554443 578888888888774
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=41.54 E-value=1.6e+02 Score=27.02 Aligned_cols=39 Identities=5% Similarity=0.076 Sum_probs=32.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
++++-.++.|-..-+..++..+...|..|.|++......
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 456667788999999999999999999999999876543
No 240
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=41.24 E-value=93 Score=25.71 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=72.2
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcc-----cChHHHhcCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEW-----APQEKVLGHSS 350 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~-----~p~~~ll~~~~ 350 (468)
+++.-.|+.... ....+++.|.+.+..+-++.+.. ...-+.....+...++++..-| +.+-.+...++
T Consensus 11 IllgvTGs~aa~---k~~~l~~~L~~~g~~V~vv~T~~----A~~fi~~~~~~~l~~~v~~~~~~~~~~~~hi~l~~~aD 83 (194)
T 1p3y_1 11 LLIGICGSISSV---GISSYLLYFKSFFKEIRVVMTKT----AEDLIPAHTVSYFCDHVYSEHGENGKRHSHVEIGRWAD 83 (194)
T ss_dssp EEEEECSCGGGG---GTHHHHHHHTTTSSEEEEEECHH----HHHHSCHHHHGGGSSEEECTTCSSSCCCCHHHHHHHCS
T ss_pred EEEEEECHHHHH---HHHHHHHHHHHCCCEEEEEEchh----HHHHHHHHHHHHhcCCEeccccccCCCcCcccccccCC
Confidence 566666766332 23456666666677766666533 1111222222334455221122 22333333333
Q ss_pred CCceeeccCchhHH-------------HhhhcCCceecccc----ccch---hhhHHHHHHHhhceeEeeccC-------
Q 012212 351 VACFISHCGWNSTM-------------EGLSMGVPFLCWPY----FSDQ---YQNRNYICEAWKIGLQFFADE------- 403 (468)
Q Consensus 351 ~~~~I~hGG~~s~~-------------eal~~GvP~v~~P~----~~DQ---~~na~rv~~~lG~g~~l~~~~------- 403 (468)
+ .+|-=+=.||+. -++..++|++++|- .+.. ..|-.++.+ +|+=+.-+...
T Consensus 84 ~-~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~-~G~~iv~p~~g~~f~lac 161 (194)
T 1p3y_1 84 I-YCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRK-DGHIVIEPVEIMAFEIAT 161 (194)
T ss_dssp E-EEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHH-HTCEECCCBCCC------
T ss_pred E-EEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHH-CCCEEECCCCCccccccc
Confidence 2 244444444332 22557899999994 2332 567788888 48854433322
Q ss_pred ------CCccCHHHHHHHHHHHhcC
Q 012212 404 ------NGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 404 ------~~~~t~~~l~~ai~~~l~~ 422 (468)
....+.++|.+.+.+.|.+
T Consensus 162 g~~g~~g~~~~~~~iv~~v~~~l~~ 186 (194)
T 1p3y_1 162 GTRKPNRGLITPDKALLAIEKGFKE 186 (194)
T ss_dssp ------CBCCCHHHHHHHHHHHCC-
T ss_pred CCcCcCCCCCCHHHHHHHHHHHhcc
Confidence 2335789999999888863
No 241
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=41.13 E-value=27 Score=31.66 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=33.1
Q ss_pred CEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 5 PHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 5 ~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
++|+|+ .-+|.|-..-...||..|+++|++|.++..+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 466655 556779999999999999999999999999873
No 242
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=41.06 E-value=1.2e+02 Score=26.06 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccCh-HHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHV-APLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~-~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|||+++-.-+.-++ ..+...++.+..-|.+|.++|.+
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 68988866665455 46666777777667788877754
No 243
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=40.96 E-value=1.3e+02 Score=24.75 Aligned_cols=62 Identities=19% Similarity=0.382 Sum_probs=39.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH--HHHhhhhhccCCCCCeEEEEcCCC
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK--IIASLQEKAEDSSSQIKLVTIPDG 70 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~--i~~~~~~~~~~~~~~i~~~~~~~~ 70 (468)
|+|+..+...+-.....+++.|++.|++|.++..+..... ++... +.. ....+-++..+|++
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la-~~~-n~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFI-DAA-NSSDSCHLVSIPPS 173 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CHHHHHH-HHH-CSTTCCEEEEECCC
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHH-Hhc-cCCCceEEEEecCc
Confidence 4566555556777888999999999999999887654311 22221 111 22346677777765
No 244
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=40.80 E-value=26 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|+.|.|..-+|.|-..-...||..|+++|++|.++=.+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3456676677789999999999999999999998866543
No 245
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=40.64 E-value=22 Score=31.51 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCEEEEEcC-CCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPY-PAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~-~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+||.|+-. +..| ..+|+.|.++||+|+++...
T Consensus 11 mm~I~iIG~tG~mG-----~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMG-----ARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHH-----HHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEECCCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 369999965 5444 46789999999999977643
No 246
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=40.35 E-value=36 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++|+++-. |.+- ..+|+.|.++|++|+++....
T Consensus 19 ~~~v~IiG~---G~iG--~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGC---GRLG--SLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECC---CHHH--HHHHHHHHhCCCeEEEEECCH
Confidence 468888843 4443 457899999999999997653
No 247
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=40.17 E-value=1.4e+02 Score=23.95 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=78.2
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCc
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVAC 353 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 353 (468)
.|.|-|-+||.. +-...++....+++.+..+-..+... +..|+.+.+ |+-. ...-.+++
T Consensus 12 ~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~sa------HR~p~~l~~----------~~~~---a~~~g~~V 70 (173)
T 4grd_A 12 APLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSA------HRMPDEMFD----------YAEK---ARERGLRA 70 (173)
T ss_dssp SCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTSHHHHHH----------HHHH---HTTTTCSE
T ss_pred CCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEcc------ccCHHHHHH----------HHHH---HHhcCCeE
Confidence 345777788864 56677888889999988776666543 455554421 1111 11122334
Q ss_pred eeeccCc----hhHHHhhhcCCceeccccccc---hhhhHHHHHHHh--hceeEee-ccCCCccCHHHHHHHHHHHhcCh
Q 012212 354 FISHCGW----NSTMEGLSMGVPFLCWPYFSD---QYQNRNYICEAW--KIGLQFF-ADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 354 ~I~hGG~----~s~~eal~~GvP~v~~P~~~D---Q~~na~rv~~~l--G~g~~l~-~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
+|.=.|. .++..+ ..-+|+|.+|.... -.+--.-+.. | |+.+..- ..+++-.++--++..| --++|+
T Consensus 71 iIa~AG~aahLpgvvA~-~t~~PVIgVPv~~~~l~G~dsLlSivq-MP~Gvpvatv~i~~~~a~NAallA~~I-La~~d~ 147 (173)
T 4grd_A 71 IIAGAGGAAHLPGMLAA-KTTVPVLGVPVASKYLKGVDSLHSIVQ-MPKGVPVATFAIGEAGAANAALFAVSI-LSGNSV 147 (173)
T ss_dssp EEEEEESSCCHHHHHHH-HCCSCEEEEEECCTTTTTHHHHHHHHC-CCTTSCCEECCSSHHHHHHHHHHHHHH-HTTSCH
T ss_pred EEEeccccccchhhhee-cCCCCEEEEEcCCCCCCchhHHHHHHh-CCCCCCceEEecCCcchHHHHHHHHHH-HcCCCH
Confidence 6655443 355544 45789999997432 2222222222 2 4433211 1111113444455444 345789
Q ss_pred HHHHHHHHHHHHHHHH
Q 012212 424 DIRSNSLKLKEVARKS 439 (468)
Q Consensus 424 ~~r~~a~~l~~~~~~~ 439 (468)
+++++.+..+++..+.
T Consensus 148 ~l~~kl~~~r~~~~~~ 163 (173)
T 4grd_A 148 DYANRLAAFRVRQNEA 163 (173)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888887764
No 248
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=39.97 E-value=43 Score=25.73 Aligned_cols=42 Identities=5% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHh-------CCceEEEcccc
Q 012212 97 RDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESM-------GIARAAVVPFG 142 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 142 (468)
.+.++.+.+.. ||+||.|..-+ -|..+++.+ .+|++.++...
T Consensus 47 ~~al~~~~~~~----~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 47 LTALPMLKKGD----FDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHHHC----CSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHHHhCC----CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=39.94 E-value=1.8e+02 Score=27.42 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
|+++..+|.|-..-...||..|..+|++|.++..+.+..
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 456666677999999999999999999999999876654
No 250
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=39.83 E-value=45 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCccC----hHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQGH----VAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH----~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|.+|.+++....+- ..-...|++.|+++|+.|+.-..+
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~ 54 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGS 54 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCCh
Confidence 3566798887666542 234678889999999988765544
No 251
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=39.81 E-value=21 Score=30.96 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 3 RQPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
++++++.+ +-+|.|-..-...||..|+++|++|.++-.+..
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34555544 345668999999999999999999999987654
No 252
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=39.78 E-value=42 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
||||++.- + |.+- ..|++.|.++||+|+.++-...
T Consensus 5 ~~~ilVtG--a-G~iG--~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 5 TGTLLSFG--H-GYTA--RVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CCEEEEET--C-CHHH--HHHHHHHGGGTCEEEEEESCGG
T ss_pred cCcEEEEC--C-cHHH--HHHHHHHHHCCCEEEEEEcChh
Confidence 46888774 3 5443 4789999999999999987654
No 253
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=39.71 E-value=15 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~~ 42 (468)
|.+++||.++-.+..|. .+|..|+++|| +|+++-...
T Consensus 1 M~~~~kI~VIGaG~~G~-----~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGG-----NIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHH-----HHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHH-----HHHHHHHhCCCceEEEEeCCc
Confidence 77788999995443333 38888999999 988887654
No 254
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=39.63 E-value=97 Score=27.90 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=38.4
Q ss_pred ccChHHHhcCCCCCceeeccCch----hHHHhhhcCCceec-ccc--ccchhhh-HHHHHHHhhceeEeec
Q 012212 339 WAPQEKVLGHSSVACFISHCGWN----STMEGLSMGVPFLC-WPY--FSDQYQN-RNYICEAWKIGLQFFA 401 (468)
Q Consensus 339 ~~p~~~ll~~~~~~~~I~hGG~~----s~~eal~~GvP~v~-~P~--~~DQ~~n-a~rv~~~lG~g~~l~~ 401 (468)
+-...+++..+++++++----.. -+.+|+.+|+++++ -|+ ..++-.. .+.+++. |+-+.+..
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~-g~~~~v~~ 125 (330)
T 3e9m_A 56 YGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQ-GVFLMEAQ 125 (330)
T ss_dssp BSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHT-TCCEEECC
T ss_pred eCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCeEEEEE
Confidence 45678888877888787654443 47788999999886 343 3333333 3334453 66555543
No 255
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=39.58 E-value=1.3e+02 Score=28.61 Aligned_cols=141 Identities=15% Similarity=0.054 Sum_probs=73.0
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHh-CCCceEE-cccChHHHhcCCCC
Q 012212 274 RSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERV-SNRGKIV-EWAPQEKVLGHSSV 351 (468)
Q Consensus 274 ~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~-~~~p~~~ll~~~~~ 351 (468)
++++.++.|..+ ...++.|.+.+.++.++-.. ..+.+.+-. ..++.+. +-.. ...|.. .
T Consensus 13 ~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~~---------~~~~~~~l~~~~~i~~~~~~~~-~~~l~~--~ 73 (457)
T 1pjq_A 13 RDCLIVGGGDVA-------ERKARLLLEAGARLTVNALT---------FIPQFTVWANEGMLTLVEGPFD-ETLLDS--C 73 (457)
T ss_dssp CEEEEECCSHHH-------HHHHHHHHHTTBEEEEEESS---------CCHHHHHHHTTTSCEEEESSCC-GGGGTT--C
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcCC---------CCHHHHHHHhcCCEEEEECCCC-ccccCC--c
Confidence 458888777653 33455566677776655432 223332222 2455554 2222 233433 3
Q ss_pred CceeeccCchh-----HHHhhhcCCceeccccccchhhhHHHH-----HHHhhceeEeeccCCCccC-HHHHHHHHHHHh
Q 012212 352 ACFISHCGWNS-----TMEGLSMGVPFLCWPYFSDQYQNRNYI-----CEAWKIGLQFFADENGIIT-RQEIQRKVLTLL 420 (468)
Q Consensus 352 ~~~I~hGG~~s-----~~eal~~GvP~v~~P~~~DQ~~na~rv-----~~~lG~g~~l~~~~~~~~t-~~~l~~ai~~~l 420 (468)
+++|..-|.-. ..+|-..|+|+-++ |++..+... .+. ++-+.+.... ...+ +..|++.|++.|
T Consensus 74 ~lVi~at~~~~~n~~i~~~a~~~~i~vn~~----d~~e~~~~~~pa~~~~~-~l~iaIsT~G-ksp~la~~ir~~ie~~l 147 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVV----DAPKAASFIMPSIIDRS-PLMVAVSSGG-TSPVLARLLREKLESLL 147 (457)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEET----TCTTSSSEECCEEEEET-TEEEEEECTT-SCHHHHHHHHHHHHHHS
T ss_pred cEEEEcCCCHHHHHHHHHHHHHcCCEEEEC----CCcccCceEeeeEEEeC-CeEEEEECCC-CChHHHHHHHHHHHHhc
Confidence 45888777654 44566779997444 333333221 121 3333333221 1122 677888888888
Q ss_pred cC--hHHHHHHHHHHHHHHHH
Q 012212 421 KN--DDIRSNSLKLKEVARKS 439 (468)
Q Consensus 421 ~~--~~~r~~a~~l~~~~~~~ 439 (468)
.+ ..+.+.+.+++++++..
T Consensus 148 ~~~~~~~~~~~~~~R~~~~~~ 168 (457)
T 1pjq_A 148 PQHLGQVARYAGQLRARVKKQ 168 (457)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhh
Confidence 54 23556666666666654
No 256
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=39.39 E-value=34 Score=33.23 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
+.+||.|+-.++.| +.++|+.|+++|++|+..=
T Consensus 21 ~~~~v~viGiG~sG----~s~~A~~l~~~G~~V~~~D 53 (494)
T 4hv4_A 21 RVRHIHFVGIGGAG----MGGIAEVLANEGYQISGSD 53 (494)
T ss_dssp -CCEEEEETTTSTT----HHHHHHHHHHTTCEEEEEC
T ss_pred cCCEEEEEEEcHhh----HHHHHHHHHhCCCeEEEEE
Confidence 45789999888776 4468999999999999764
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=39.35 E-value=2.1e+02 Score=25.67 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.|+++..+|.|-..-...||..|+..|.+|.++..+.+..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 3456666777999999999999999999999998877654
No 258
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=39.32 E-value=48 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
..++++++..+...-..+.-+||+|.-...+...|+.+|||+..+.+
T Consensus 14 snl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~ 60 (211)
T 3p9x_A 14 TNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDP 60 (211)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCG
T ss_pred hHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeCh
Confidence 45677777765433223578899996555677899999999987654
No 259
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=39.30 E-value=16 Score=32.38 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+||.|+-.+..|. .+|+.|+++||+|+++....
T Consensus 1 M~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 1 MTTYGFLGLGIMGG-----PMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHHHHTCCEEEECSSG
T ss_pred CCeEEEEccCHHHH-----HHHHHHHHCCCeEEEEcCCH
Confidence 45799997666653 67899999999999886543
No 260
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=39.30 E-value=23 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||.|+-.+..| ..+|..|.++||+|+++....
T Consensus 1 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALG-----QLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSSC
T ss_pred CeEEEECcCHHH-----HHHHHHHHhCCCCEEEEEcCc
Confidence 478888655545 378999999999999987643
No 261
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=39.25 E-value=1.1e+02 Score=27.86 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=56.6
Q ss_pred CEEEEEcCCCcc--C--hHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCC
Q 012212 5 PHVLVIPYPAQG--H--VAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADRED 80 (468)
Q Consensus 5 ~~Il~~~~~~~G--H--~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (468)
.-|++.|..+.. . ..-+..|++.|.++|++|.+..++...+..++.... -+-....+. ...+
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~------~~~~~~~l~--------g~~s 251 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQ------METKPIVAT--------GKFQ 251 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHT------CSSCCEECT--------TCCC
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHh------cccccEEee--------CCCC
Confidence 345666655432 2 235899999999999999987766555544432110 000001110 0111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 81 PLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
+.++..-+. ..|++|+.- .+...+|..+|+|+|.+..
T Consensus 252 ---------------l~e~~ali~------~a~~~i~~D--sG~~HlAaa~g~P~v~lfg 288 (349)
T 3tov_A 252 ---------------LGPLAAAMN------RCNLLITND--SGPMHVGISQGVPIVALYG 288 (349)
T ss_dssp ---------------HHHHHHHHH------TCSEEEEES--SHHHHHHHTTTCCEEEECS
T ss_pred ---------------HHHHHHHHH------hCCEEEECC--CCHHHHHHhcCCCEEEEEC
Confidence 122222332 279999853 4577889999999998763
No 262
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=39.16 E-value=34 Score=25.26 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCccChHHHH-HHHHHHHHCCCE-EEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLM-KLATKIAERAIK-VTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~-~LA~~L~~rGH~-Vt~~~~~ 41 (468)
+++||+++|..|.|.-.-.. .|-+.+.++|.+ +.+-..+
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~ 57 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCS 57 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEee
Confidence 45789999999999888877 788888899988 6654443
No 263
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=39.01 E-value=58 Score=25.31 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=29.6
Q ss_pred CCEEE-EEcCCCccChHH--HHHHHHHHHHCCCEE-EEEECCcchHH
Q 012212 4 QPHVL-VIPYPAQGHVAP--LMKLATKIAERAIKV-TVVNTQFIHKK 46 (468)
Q Consensus 4 ~~~Il-~~~~~~~GH~~p--~~~LA~~L~~rGH~V-t~~~~~~~~~~ 46 (468)
.||++ ++..+-+|+-.. .+.+|+++.+.||+| .++-..+....
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~~ 58 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYN 58 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHHHH
Confidence 36776 445555666554 466799999999999 77776654433
No 264
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=38.82 E-value=26 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCC-CEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERA-IKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG-H~Vt~~~~~~ 42 (468)
.+++|+++-. |.+ -..+++.|.++| |+|+++....
T Consensus 4 ~~~~v~I~G~---G~i--G~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGA---GKI--GQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECC---SHH--HHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECC---CHH--HHHHHHHHHhCCCceEEEEeCCH
Confidence 3467887744 333 246899999999 9998887643
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.81 E-value=32 Score=30.79 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=32.0
Q ss_pred CCEE-EEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHV-LVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~I-l~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++++ .|..-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3454 56666677999999999999999999999997764
No 266
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=38.75 E-value=1.4e+02 Score=23.47 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHH-hhhhhccCCCCCeEEEEcCCCCCCCcCCC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIA-SLQEKAEDSSSQIKLVTIPDGLELQAADR 78 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 78 (468)
.+.++|++.. ...+-.-++.+|+.|.+. ||++. +| ......+.+ .| +....+..+ .
T Consensus 9 p~~g~V~lsv--~D~dK~~~v~~ak~~~~ll~Gf~l~-AT-~gTa~~L~e~~G----------l~v~~v~k~-------~ 67 (152)
T 1b93_A 9 PARKHIALVA--HDHCKQMLMSWVERHQPLLEQHVLY-AT-GTTGNLISRATG----------MNVNAMLSG-------P 67 (152)
T ss_dssp CSSCEEEEEE--CGGGHHHHHHHHHHTHHHHTTSEEE-EE-TTHHHHHHHHHC----------CCCEEECCG-------G
T ss_pred CCCCEEEEEE--ehhhHHHHHHHHHHHHHHhCCCEEE-Ec-cHHHHHHHHHhC----------ceeEEEEec-------C
Confidence 3456676663 557778899999999999 99764 44 445566655 54 333333211 0
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC--cc-c-------HHHHHHHhCCceEE
Q 012212 79 EDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT--VG-S-------ALEVAESMGIARAA 137 (468)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~--~~-~-------~~~~A~~lgiP~v~ 137 (468)
.. .++++-++++. .+.|+||.-.- .. . ...+|-..+||++.
T Consensus 68 eG-----------G~p~I~d~I~~-------geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 68 MG-----------GDQQVGALISE-------GKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp GT-----------HHHHHHHHHHT-------TCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred CC-----------CCchHHHHHHC-------CCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 00 12334444433 57999998544 22 2 34688899999875
No 267
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=38.67 E-value=33 Score=29.23 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=27.8
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 5 PHVLVIPY--PAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 5 ~~Il~~~~--~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
||.+|++. .+.|-..-...|++.|.++|++|.++-
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 45454433 355999999999999999999999975
No 268
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=38.63 E-value=32 Score=28.59 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||+++- +.|.+- ..|++.|.++||+|+.++-..
T Consensus 1 MkvlVtG--atG~iG--~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIG--ATGRAG--SRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEc--CCchhH--HHHHHHHHhCCCEEEEEEcCc
Confidence 4676663 334333 478999999999999998754
No 269
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=38.53 E-value=99 Score=30.21 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 110 EPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 110 ~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.+||++|.+. ....+|+.+|||++.+.
T Consensus 348 ~~pDL~ig~~---~~~~~a~~~giP~~~i~ 374 (525)
T 3aek_B 348 AAPELILGTQ---MERNIAKKLGLPCAVIS 374 (525)
T ss_dssp HCCSEEEECH---HHHHHHHHHTCCEEECS
T ss_pred cCCCEEEecc---hhHHHHHHcCCCEEEec
Confidence 3599999884 47778999999998754
No 270
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=38.49 E-value=49 Score=27.96 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCcc----ChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQG----HVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~G----H~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++|.+|.+++....+ +..-...|++.|+++|+.|..-..+
T Consensus 7 ~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~ 50 (216)
T 1ydh_A 7 SRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGS 50 (216)
T ss_dssp CSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCc
Confidence 456678888765543 2346788889999999988655554
No 271
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=38.46 E-value=1.9e+02 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.9
Q ss_pred CceEEEecCCcc------cHHHHHHHhCCceEEEcc
Q 012212 111 PIRCVIADVTVG------SALEVAESMGIARAAVVP 140 (468)
Q Consensus 111 ~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~ 140 (468)
+||+||+-.... .+..+|..||+|.+...+
T Consensus 113 ~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~ 148 (252)
T 1efp_B 113 GTELIIAGKQAIDNDMNATGQMLAAILGWAQATFAS 148 (252)
T ss_dssp TCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEE
T ss_pred CCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEE
Confidence 499999987663 678899999999998654
No 272
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=38.35 E-value=32 Score=31.06 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++|+|++.- +.|.+ -..|++.|.++||+|+.++-..
T Consensus 12 ~~M~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 12 AHVKYAVLG--ATGLL--GHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCCEEEEES--TTSHH--HHHHHHHHHHTTCEEEEEECTT
T ss_pred cCCEEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEecCh
Confidence 346887774 33433 2478899999999999988653
No 273
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=38.33 E-value=33 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||+++- +.|.+- ..|+++|.++||+|+.++-..
T Consensus 1 MkilVtG--atG~iG--~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLG--ATGRAG--SAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEc--CCCHHH--HHHHHHHHHCCCEEEEEEecc
Confidence 4666663 334333 578999999999999998654
No 274
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=37.93 E-value=28 Score=30.83 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
+||||.|+-.+..|. .+|+.|.+.||+|+++.
T Consensus 2 ~~m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGS-----PMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECCCSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEccCHHHH-----HHHHHHHhCCCEEEEEc
Confidence 457999986655553 57888999999998776
No 275
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=37.74 E-value=42 Score=28.60 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 93 RGCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 93 ~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
....+..++.+++.+ +|+||.|.. +..+|+.+|+|.+.+.+
T Consensus 140 ~ee~~~~i~~l~~~G----~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 140 EEDARGQINELKANG----TEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHHHHHHTT----CCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHHHHHHCC----CCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 356788888888854 999999954 68899999999999884
No 276
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=37.67 E-value=1.3e+02 Score=27.04 Aligned_cols=107 Identities=7% Similarity=0.022 Sum_probs=58.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
+..|+.|.+.. ..+.++.+. +.+++.+.... ......+.++ -++. +-...+++..++++++
T Consensus 6 vgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~~------~~~~~~~~~~--~~~~---~~~~~~~l~~~~~D~V 67 (331)
T 4hkt_A 6 FGLLGAGRIGK-------VHAKAVSGNADARLVAVADAF------PAAAEAIAGA--YGCE---VRTIDAIEAAADIDAV 67 (331)
T ss_dssp EEEECCSHHHH-------HHHHHHHHCTTEEEEEEECSS------HHHHHHHHHH--TTCE---ECCHHHHHHCTTCCEE
T ss_pred EEEECCCHHHH-------HHHHHHhhCCCcEEEEEECCC------HHHHHHHHHH--hCCC---cCCHHHHhcCCCCCEE
Confidence 67787777642 344555554 44555455433 0001112111 1222 5667888987788878
Q ss_pred eeccC----chhHHHhhhcCCceec-ccc--ccchhh-hHHHHHHHhhceeEeec
Q 012212 355 ISHCG----WNSTMEGLSMGVPFLC-WPY--FSDQYQ-NRNYICEAWKIGLQFFA 401 (468)
Q Consensus 355 I~hGG----~~s~~eal~~GvP~v~-~P~--~~DQ~~-na~rv~~~lG~g~~l~~ 401 (468)
+---- ..-+.+|+.+|+++++ -|+ ..++-. -...+++. |+-+.+..
T Consensus 68 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~-g~~~~v~~ 121 (331)
T 4hkt_A 68 VICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDT-KAKLMVGF 121 (331)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT-TCCEEECC
T ss_pred EEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHc-CCeEEEcc
Confidence 75333 3457789999999886 353 333333 33444554 76666654
No 277
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=37.66 E-value=18 Score=32.60 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~ 41 (468)
.++||.|+-.+..| ..+|+.|+++|| +|+++...
T Consensus 23 ~~~~I~iIG~G~mG-----~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAA-----SAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHH-----HHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCCeEEEEcCC
Confidence 46899999665555 478999999999 99988764
No 278
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=37.65 E-value=94 Score=25.58 Aligned_cols=118 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred chhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccCh
Q 012212 263 SCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQ 342 (468)
Q Consensus 263 ~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~ 342 (468)
++-++|.++. ..+|+-|. +.-.+....++..+.+.+++=+.... -...+.-...-...+++++...
T Consensus 35 ~lg~~la~~g---~~lv~GGG----~~GlM~a~~~ga~~~GG~viGv~p~~-------l~~~e~~~~~~~~~i~~~~~~~ 100 (189)
T 3sbx_A 35 AVGAAIAARG---WTLVWGGG----HVSAMGAVSSAARAHGGWTVGVIPKM-------LVHRELADHDADELVVTETMWE 100 (189)
T ss_dssp HHHHHHHHTT---CEEEECCB----CSHHHHHHHHHHHTTTCCEEEEEETT-------TTTTTTBCTTCSEEEEESSHHH
T ss_pred HHHHHHHHCC---CEEEECCC----ccCHHHHHHHHHHHcCCcEEEEcCch-------hhhcccCCCCCCeeEEcCCHHH
Q ss_pred -HHHhcCCCCCceeeccCchhHHHhh---------hcCCceecc---ccccchhhhHHHHHHHhhc
Q 012212 343 -EKVLGHSSVACFISHCGWNSTMEGL---------SMGVPFLCW---PYFSDQYQNRNYICEAWKI 395 (468)
Q Consensus 343 -~~ll~~~~~~~~I~hGG~~s~~eal---------~~GvP~v~~---P~~~DQ~~na~rv~~~lG~ 395 (468)
..++..-+-..++--||.||+-|.. .+++|++++ .++.+=..+-..+.+. |.
T Consensus 101 Rk~~m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~-Gf 165 (189)
T 3sbx_A 101 RKQVMEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADT-GY 165 (189)
T ss_dssp HHHHHHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHC-CC
No 279
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=37.63 E-value=57 Score=26.94 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred chhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccCh
Q 012212 263 SCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQ 342 (468)
Q Consensus 263 ~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~ 342 (468)
++.++|.+.. ...|+-|. +.-.+....++..+.+.+.+=++... -.+.+.....-.+..+++..+.
T Consensus 24 ~lg~~La~~g---~~lV~GGg----~~GiM~aa~~gA~~~gG~~iGv~p~~-------l~~~e~~~~~~~~~~~~~~~~~ 89 (191)
T 1t35_A 24 ELGVYMAEQG---IGLVYGGS----RVGLMGTIADAIMENGGTAIGVMPSG-------LFSGEVVHQNLTELIEVNGMHE 89 (191)
T ss_dssp HHHHHHHHTT---CEEEECCC----CSHHHHHHHHHHHTTTCCEEEEEETT-------CCHHHHTTCCCSEEEEESHHHH
T ss_pred HHHHHHHHCC---CEEEECCC----cccHHHHHHHHHHHcCCeEEEEeCch-------hcccccccCCCCccccCCCHHH
Q ss_pred -HHHhcCCCCCceeeccCchhHHHhhh---------cCCceecc
Q 012212 343 -EKVLGHSSVACFISHCGWNSTMEGLS---------MGVPFLCW 376 (468)
Q Consensus 343 -~~ll~~~~~~~~I~hGG~~s~~eal~---------~GvP~v~~ 376 (468)
..++..-+-..++--||.||+-|... +++|++++
T Consensus 90 Rk~~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll 133 (191)
T 1t35_A 90 RKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLY 133 (191)
T ss_dssp HHHHHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEE
T ss_pred HHHHHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEe
No 280
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=37.36 E-value=1.4e+02 Score=26.71 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||+|+..+. ......++|.++||+|..+.+.+
T Consensus 1 mrivf~gt~~-----fa~~~L~~L~~~~~~i~~Vvt~~ 33 (305)
T 2bln_A 1 MKTVVFAYHD-----MGCLGIEALLAAGYEISAIFTHT 33 (305)
T ss_dssp CEEEEEECHH-----HHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEEEcCH-----HHHHHHHHHHHCCCcEEEEEcCC
Confidence 5888885432 22455677888899998777653
No 281
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=37.27 E-value=30 Score=30.66 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCC-CEEEEEECCcc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERA-IKVTVVNTQFI 43 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rG-H~Vt~~~~~~~ 43 (468)
|..+++|++.- +.|.+ -..|++.|.++| |+|+.++-...
T Consensus 2 M~~~~~ilVtG--atG~i--G~~l~~~L~~~g~~~V~~~~R~~~ 41 (299)
T 2wm3_A 2 MVDKKLVVVFG--GTGAQ--GGSVARTLLEDGTFKVRVVTRNPR 41 (299)
T ss_dssp --CCCEEEEET--TTSHH--HHHHHHHHHHHCSSEEEEEESCTT
T ss_pred CCCCCEEEEEC--CCchH--HHHHHHHHHhcCCceEEEEEcCCC
Confidence 54456777663 44444 346889999999 99999987644
No 282
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=37.16 E-value=36 Score=30.98 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|.+|+|++++..|..|...-...+.+.|.++|+++.+..+.
T Consensus 26 m~~~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 26 MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp ----CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC
T ss_pred hhhcceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec
Confidence 44567788877766554455667888999999999888654
No 283
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=36.83 E-value=29 Score=29.12 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++|.++-.+..| ..+|+.|.++||+|+++...
T Consensus 19 ~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 19 GMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECTT
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcCC
Confidence 5788888654444 57889999999999988643
No 284
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=36.78 E-value=1.1e+02 Score=28.11 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
+..|+.|.... ...+.++...+.+++.+.... ......+.++.+ ... -+-...++|..+++++++
T Consensus 29 vgiiG~G~~~~------~~~~~~~~~~~~~lvav~d~~------~~~a~~~a~~~~-~~~--~~~~~~~ll~~~~vD~V~ 93 (361)
T 3u3x_A 29 FAAVGLNHNHI------YGQVNCLLRAGARLAGFHEKD------DALAAEFSAVYA-DAR--RIATAEEILEDENIGLIV 93 (361)
T ss_dssp EEEECCCSTTH------HHHHHHHHHTTCEEEEEECSC------HHHHHHHHHHSS-SCC--EESCHHHHHTCTTCCEEE
T ss_pred EEEECcCHHHH------HHHHHHhhcCCcEEEEEEcCC------HHHHHHHHHHcC-CCc--ccCCHHHHhcCCCCCEEE
Confidence 78888876421 123334444566766666543 011122222221 111 345778999988888888
Q ss_pred eccCc----hhHHHhhhcCCceec-cccc--cchhh-hHHHHHHHhhceeEee
Q 012212 356 SHCGW----NSTMEGLSMGVPFLC-WPYF--SDQYQ-NRNYICEAWKIGLQFF 400 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~-~P~~--~DQ~~-na~rv~~~lG~g~~l~ 400 (468)
--.-. --+.+|+.+|+++++ -|+. .++-. -.+.+++. |+-+.+.
T Consensus 94 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~-g~~l~v~ 145 (361)
T 3u3x_A 94 SAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAET-GRIFSIL 145 (361)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTT-CCCEEEE
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 65443 347889999999987 5653 33333 23333443 5555554
No 285
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=36.74 E-value=40 Score=27.06 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCc---cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQ---GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~---GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..+|+++|.-|. --.++...|++.|.++|.+|.|+.+|
T Consensus 22 A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 62 (184)
T 1d4o_A 22 ANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHP 62 (184)
T ss_dssp CSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 357888863322 13568999999999999999999986
No 286
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=36.67 E-value=24 Score=31.76 Aligned_cols=41 Identities=20% Similarity=0.006 Sum_probs=30.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-hHHHHHhh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-HKKIIASL 51 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-~~~i~~~~ 51 (468)
|||+++-.++.|- .+|..|. +||+|+++..... .+.+.+.|
T Consensus 3 mkI~IiGaGa~G~-----~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G 44 (307)
T 3ego_A 3 LKIGIIGGGSVGL-----LCAYYLS-LYHDVTVVTRRQEQAAAIQSEG 44 (307)
T ss_dssp CEEEEECCSHHHH-----HHHHHHH-TTSEEEEECSCHHHHHHHHHHC
T ss_pred CEEEEECCCHHHH-----HHHHHHh-cCCceEEEECCHHHHHHHHhCC
Confidence 6999997776664 6688888 9999999987653 45566544
No 287
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=36.59 E-value=21 Score=31.78 Aligned_cols=27 Identities=4% Similarity=-0.032 Sum_probs=22.7
Q ss_pred CCceeeccCchhHHHhhhc----CCceeccc
Q 012212 351 VACFISHCGWNSTMEGLSM----GVPFLCWP 377 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~----GvP~v~~P 377 (468)
++++|.-||=||+.+++.. ++|++.++
T Consensus 64 ~D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 64 ADLAVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp CSEEEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred CCEEEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 3559999999999999843 78988886
No 288
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=36.43 E-value=2.1e+02 Score=24.82 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=25.1
Q ss_pred CceEEEecCCcc------cHHHHHHHhCCceEEEcc
Q 012212 111 PIRCVIADVTVG------SALEVAESMGIARAAVVP 140 (468)
Q Consensus 111 ~pDlvi~D~~~~------~~~~~A~~lgiP~v~~~~ 140 (468)
+||+||+-.... .+..+|..||+|++...+
T Consensus 112 ~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~ 147 (264)
T 1o97_C 112 APDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVA 147 (264)
T ss_dssp CCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEE
T ss_pred CCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceE
Confidence 499999987663 678899999999998664
No 289
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=36.19 E-value=92 Score=23.23 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=33.1
Q ss_pred cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012212 369 MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKE 434 (468)
Q Consensus 369 ~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~ 434 (468)
...|+|++--..|.......+... |+--.+.+- ++.++|..+|++++.....++..+++.+
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~~-ga~~~l~KP----~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 131 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAINDA-GIHQFLTKP----WHPEQLLSSARNAARMFTLARENERLSL 131 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHHHT-TCCEEEESS----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHhh-chhhhccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777764444433333333332 453334332 7899999999999864444333333333
No 290
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=35.91 E-value=1.1e+02 Score=27.95 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=59.1
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
+..|+.|.+. ...+.++.+. +.+++.+.... ......+.++. ++. .+-...+++..++++++
T Consensus 8 vgiiG~G~~g-------~~~~~~l~~~~~~~lvav~d~~------~~~~~~~~~~~--g~~--~~~~~~~~l~~~~~D~V 70 (354)
T 3db2_A 8 VAAIGLGRWA-------YVMADAYTKSEKLKLVTCYSRT------EDKREKFGKRY--NCA--GDATMEALLAREDVEMV 70 (354)
T ss_dssp EEEECCSHHH-------HHHHHHHTTCSSEEEEEEECSS------HHHHHHHHHHH--TCC--CCSSHHHHHHCSSCCEE
T ss_pred EEEEccCHHH-------HHHHHHHHhCCCcEEEEEECCC------HHHHHHHHHHc--CCC--CcCCHHHHhcCCCCCEE
Confidence 7788888754 2355666665 44555455433 00011121121 122 25567888877777777
Q ss_pred eeccC----chhHHHhhhcCCceec-ccc--ccchhhh-HHHHHHHhhceeEeec
Q 012212 355 ISHCG----WNSTMEGLSMGVPFLC-WPY--FSDQYQN-RNYICEAWKIGLQFFA 401 (468)
Q Consensus 355 I~hGG----~~s~~eal~~GvP~v~-~P~--~~DQ~~n-a~rv~~~lG~g~~l~~ 401 (468)
+---- ...+.+|+.+|+++++ -|+ ..++-.- ...++++ |+-+.+..
T Consensus 71 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~ 124 (354)
T 3db2_A 71 IITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET-GVKFLCGH 124 (354)
T ss_dssp EECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred EEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc-CCeEEEee
Confidence 74333 3457789999999886 354 3333333 3344454 76666554
No 291
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=35.78 E-value=1.9e+02 Score=26.61 Aligned_cols=41 Identities=2% Similarity=0.044 Sum_probs=34.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKK 46 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~ 46 (468)
-+++...++.|-..-.+.+|..++++|..|.|++.+...+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhH
Confidence 45677888899999999999999999999999999865443
No 292
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=35.74 E-value=62 Score=24.24 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCceEEEecCCcc--cHHHHHHHh-------CCceEEEcccc
Q 012212 97 RDLIEKINQSNDCEPIRCVIADVTVG--SALEVAESM-------GIARAAVVPFG 142 (468)
Q Consensus 97 ~~ll~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 142 (468)
.+.++.+.. .+||+||.|...+ .+..+++.+ .+|.++++...
T Consensus 38 ~~al~~~~~----~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 38 EEALQQIYK----NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHH----SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
No 293
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=35.73 E-value=2.2e+02 Score=25.85 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=58.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCce
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACF 354 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 354 (468)
+..|++|.+.. ..+.++... +.+++.+.... ++........++ .-+-...+++..++++++
T Consensus 8 vgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~~---------~~~~~~a~~~g~--~~~~~~~~ll~~~~~D~V 69 (359)
T 3e18_A 8 LVIVGYGGMGS-------YHVTLASAADNLEVHGVFDIL---------AEKREAAAQKGL--KIYESYEAVLADEKVDAV 69 (359)
T ss_dssp EEEECCSHHHH-------HHHHHHHTSTTEEEEEEECSS---------HHHHHHHHTTTC--CBCSCHHHHHHCTTCCEE
T ss_pred EEEECcCHHHH-------HHHHHHHhCCCcEEEEEEcCC---------HHHHHHHHhcCC--ceeCCHHHHhcCCCCCEE
Confidence 77888887642 233455555 33444444432 111110111222 234567889988888888
Q ss_pred eeccCch----hHHHhhhcCCceec-ccc--ccchhhhH-HHHHHHhhceeEeec
Q 012212 355 ISHCGWN----STMEGLSMGVPFLC-WPY--FSDQYQNR-NYICEAWKIGLQFFA 401 (468)
Q Consensus 355 I~hGG~~----s~~eal~~GvP~v~-~P~--~~DQ~~na-~rv~~~lG~g~~l~~ 401 (468)
+----.. -+.+|+.+|+++++ -|+ ..++-... +.+++. |+-+.+..
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~-g~~~~v~~ 123 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV-NKHFMVHQ 123 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH-TCCEEEEC
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh-CCeEEEEe
Confidence 8655443 47788999999987 343 33333333 334453 66555543
No 294
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=35.48 E-value=1.1e+02 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 012212 406 IITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKS 439 (468)
Q Consensus 406 ~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~ 439 (468)
.++++++.+....+ ...+++++-|++.+...
T Consensus 2 ~~~~eq~~k~~~el---~~v~~n~~lL~EML~~~ 32 (103)
T 1wrd_A 2 PLGSEQIGKLRSEL---EMVSGNVRVMSEMLTEL 32 (103)
T ss_dssp CSSSTTHHHHHHHH---HHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 47788888777666 57889999998888773
No 295
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=35.25 E-value=42 Score=28.92 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=23.3
Q ss_pred CCceEEEecCCcc-------cHHHHHHHhCCceEEEcc
Q 012212 110 EPIRCVIADVTVG-------SALEVAESMGIARAAVVP 140 (468)
Q Consensus 110 ~~pDlvi~D~~~~-------~~~~~A~~lgiP~v~~~~ 140 (468)
.+||++++|.... -+..+--.+++|+|.+.-
T Consensus 108 ~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAK 145 (246)
T 3ga2_A 108 TEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAK 145 (246)
T ss_dssp SCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred CCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeeec
Confidence 4699999998755 344566778999998763
No 296
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.12 E-value=60 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCCCEEEEE-cCCCccChHH--HHHHHHHHHHCCCEEEEEE
Q 012212 2 SRQPHVLVI-PYPAQGHVAP--LMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 2 ~~~~~Il~~-~~~~~GH~~p--~~~LA~~L~~rGH~Vt~~~ 39 (468)
+++||||++ ..|-...++- .-...+.|.++||+|++.-
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456788855 4444433333 3346778889999999874
No 297
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=35.03 E-value=24 Score=32.97 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=37.5
Q ss_pred hHHHhcCCCCCceeeccCchhHHHhhhc----CC-ceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHH
Q 012212 342 QEKVLGHSSVACFISHCGWNSTMEGLSM----GV-PFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKV 416 (468)
Q Consensus 342 ~~~ll~~~~~~~~I~hGG~~s~~eal~~----Gv-P~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai 416 (468)
..++-..+ +++|+=||=||+..++.. ++ |++.+... .+|.= .+ ++.+++.+++
T Consensus 108 ~~~~~~~~--DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G------------~lGFL-----t~---~~~~~~~~al 165 (388)
T 3afo_A 108 EQDIVNRT--DLLVTLGGDGTILHGVSMFGNTQVPPVLAFALG------------TLGFL-----SP---FDFKEHKKVF 165 (388)
T ss_dssp HHHHHHHC--SEEEEEESHHHHHHHHHTTTTSCCCCEEEEECS------------SCCSS-----CC---EEGGGHHHHH
T ss_pred hhhcccCC--CEEEEEeCcHHHHHHHHHhcccCCCeEEEEECC------------CcccC-----Cc---CChHHHHHHH
Confidence 34444334 559999999999999653 67 78877421 01111 12 4567777888
Q ss_pred HHHhcC
Q 012212 417 LTLLKN 422 (468)
Q Consensus 417 ~~~l~~ 422 (468)
++++++
T Consensus 166 ~~il~g 171 (388)
T 3afo_A 166 QEVISS 171 (388)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 887764
No 298
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=34.89 E-value=45 Score=27.29 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCccChHHHH-HHHHHHHH-CCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLM-KLATKIAE-RAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~-~LA~~L~~-rGH~Vt~~~~~~ 42 (468)
||||+++-....|+..-+. .+++.|.+ .|++|.++.-..
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 4688877666678776554 45666766 899998887643
No 299
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=34.77 E-value=27 Score=32.42 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
.|||+++-.+--| +.+|..|+++||+|+++-
T Consensus 1 sm~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 1 SMHVGIIGAGIGG-----TCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 3788888544333 678899999999999984
No 300
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=34.71 E-value=2.4e+02 Score=25.73 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=33.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
-+++...++.|-..-.+.+|..++++|..|.|++.....+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 104 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 4567788888999999999999999999999999975433
No 301
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=34.68 E-value=16 Score=33.87 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc-hHHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI-HKKIIA 49 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~-~~~i~~ 49 (468)
+|||.++-.+..| ..+|..|+++||+|++...... .+.+.+
T Consensus 29 ~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~~~~~~~i~~ 70 (356)
T 3k96_A 29 KHPIAILGAGSWG-----TALALVLARKGQKVRLWSYESDHVDEMQA 70 (356)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred CCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 5789999766665 3689999999999999987532 334444
No 302
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=34.59 E-value=30 Score=31.51 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++++||+.- +.|.+- ..|++.|.++||+|+.+.-..
T Consensus 24 ~~~~vlVtG--atG~iG--~~l~~~L~~~g~~V~~~~r~~ 59 (351)
T 3ruf_A 24 SPKTWLITG--VAGFIG--SNLLEKLLKLNQVVIGLDNFS 59 (351)
T ss_dssp SCCEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEECCS
T ss_pred CCCeEEEEC--CCcHHH--HHHHHHHHHCCCEEEEEeCCC
Confidence 456787763 444443 478999999999999998643
No 303
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=34.48 E-value=44 Score=27.38 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCc---cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQ---GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~---GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..+|+++|.-+. --.++...|++.|.++|.+|.|+.+|
T Consensus 46 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 86 (203)
T 2fsv_C 46 ASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHP 86 (203)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 357788763322 23568899999999999999999986
No 304
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=34.43 E-value=18 Score=32.54 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++||.|+-.+..| ..+|+.|.++||+|+++...
T Consensus 8 ~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 41 (306)
T 3l6d_A 8 FEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWNRS 41 (306)
T ss_dssp CSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 35789999655444 37899999999999988543
No 305
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=34.31 E-value=74 Score=22.57 Aligned_cols=33 Identities=6% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
..+|+++|..+ ......+..|.+.||+|..+.+
T Consensus 56 ~~~ivvyC~~g----~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 56 NETYYIICKAG----GRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp TSEEEEECSSS----HHHHHHHHHHHTTTCEEEEETT
T ss_pred CCcEEEEcCCC----chHHHHHHHHHHCCCCEEEecc
Confidence 36788888443 4577889999999998887654
No 306
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=34.21 E-value=49 Score=28.97 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+.+.|+++++.++. - --..+|+.|+++|++|+.+....
T Consensus 1 M~~~~k~vlVTGas~-g--IG~~~a~~l~~~G~~V~~~~r~~ 39 (281)
T 3m1a_A 1 MSESAKVWLVTGASS-G--FGRAIAEAAVAAGDTVIGTARRT 39 (281)
T ss_dssp ---CCCEEEETTTTS-H--HHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCcEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEeCCH
Confidence 554556777765543 2 23478999999999999887653
No 307
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=34.13 E-value=1.1e+02 Score=27.97 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=58.6
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCc
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVAC 353 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 353 (468)
.+..|+.|.+.. ...+.++... +..++.+.... ......+.++. ++. .+-...+++..+++++
T Consensus 29 rigiIG~G~~g~------~~~~~~l~~~~~~~l~av~d~~------~~~~~~~a~~~--g~~--~~~~~~~ll~~~~~D~ 92 (350)
T 3rc1_A 29 RVGVIGCADIAW------RRALPALEAEPLTEVTAIASRR------WDRAKRFTERF--GGE--PVEGYPALLERDDVDA 92 (350)
T ss_dssp EEEEESCCHHHH------HTHHHHHHHCTTEEEEEEEESS------HHHHHHHHHHH--CSE--EEESHHHHHTCTTCSE
T ss_pred EEEEEcCcHHHH------HHHHHHHHhCCCeEEEEEEcCC------HHHHHHHHHHc--CCC--CcCCHHHHhcCCCCCE
Confidence 377888877642 1245555555 34444454432 00111121111 222 2356788998778877
Q ss_pred eeeccC----chhHHHhhhcCCceec-ccc--ccchhhh-HHHHHHHhhceeEeec
Q 012212 354 FISHCG----WNSTMEGLSMGVPFLC-WPY--FSDQYQN-RNYICEAWKIGLQFFA 401 (468)
Q Consensus 354 ~I~hGG----~~s~~eal~~GvP~v~-~P~--~~DQ~~n-a~rv~~~lG~g~~l~~ 401 (468)
++---- ..-+.+|+.+|+++++ -|+ ..++-.- .+.++++ |+-+.+..
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~-g~~~~v~~ 147 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER-GLLLMENF 147 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh-CCEEEEEe
Confidence 775333 3457788999999876 254 3333333 3334453 66655543
No 308
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=34.12 E-value=34 Score=30.76 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.1
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQ--GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~--GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|++++.++. |+- +.+|+.|+++|++|+++...
T Consensus 133 ~~vlVlcG~GNNGGDG---lv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQG---ISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCcEEEEEec
Confidence 48999987665 443 68899999999999998654
No 309
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=34.08 E-value=52 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|.+.+||+|+-.++.| +.++|+.|.++|++|+..=.
T Consensus 16 ~~~~~~v~viGiG~sG----~s~~A~~l~~~G~~V~~~D~ 51 (491)
T 2f00_A 16 MRRVRHIHFVGIGGAG----MGGIAEVLANEGYQISGSDL 51 (491)
T ss_dssp CTTCCEEEEETTTSTT----HHHHHHHHHHTTCEEEEECS
T ss_pred cccCCEEEEEEcCHHH----HHHHHHHHHhCCCeEEEECC
Confidence 3446789999888665 55689999999999997544
No 310
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=34.05 E-value=40 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++++|++.- +.|-+ -..|++.|.++||+|+.+...
T Consensus 26 ~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITG--GAGFV--GSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEc--CccHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 457777763 33433 247889999999999998753
No 311
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=34.02 E-value=31 Score=30.19 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--------HHHC-CCEEEEEECCcchHHHHHhh
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATK--------IAER-AIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~--------L~~r-GH~Vt~~~~~~~~~~i~~~~ 51 (468)
+..+|++.+.++..|-....-++.. |..+ |++|+.+...-..+.+.+..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa 176 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKA 176 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999999987 9999 99999998876666555443
No 312
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=33.95 E-value=87 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.|+||-+- |+...........++++|.++.+.+.++.+.
T Consensus 3 ~M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~v~~P~ 42 (162)
T 3ehd_A 3 AMTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQ 42 (162)
T ss_dssp -CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEEEECGG
T ss_pred CccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCEEECCC
Confidence 36677655 3334466667777889998774446666653
No 313
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=33.80 E-value=29 Score=31.57 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+||.|+-.+..| ..+|..|.+.||+|+++...
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 3789999766655 47899999999999998764
No 314
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=33.79 E-value=25 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++|++.- +.|.+- ..|++.|.++||+|+.++-..
T Consensus 7 ~~~vlVtG--atG~iG--~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 7 KHRILITG--GAGFIG--GHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp CCEEEEET--TTSHHH--HHHHHHHHHTTCCEEEECCCS
T ss_pred CCeEEEEC--CCChHH--HHHHHHHHHCCCEEEEEecCC
Confidence 56777764 334332 478999999999999987643
No 315
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=33.78 E-value=39 Score=30.30 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
||+|++.- +.|-+ -..|++.|.++||+|+.+...
T Consensus 1 M~~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 1 MNSILICG--GAGYI--GSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp -CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEC--CCcHH--HHHHHHHHHhCCCEEEEEeCC
Confidence 45777663 33333 257899999999999998753
No 316
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=33.66 E-value=46 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCc---cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQ---GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~---GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
..+|+++|.-+. --.++...|++.|.++|.+|.|+.+|
T Consensus 45 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 85 (207)
T 1djl_A 45 ANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHP 85 (207)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCc
Confidence 357788763322 23568899999999999999999986
No 317
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=33.46 E-value=22 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.||+++-.+.. -..+|+.|.++||+|+++....
T Consensus 8 ~~viIiG~G~~-----G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGYGRV-----GSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp SCEEEECCSHH-----HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEECcCHH-----HHHHHHHHHHCCCCEEEEECCH
Confidence 57887754333 3478999999999999998764
No 318
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=33.31 E-value=1.3e+02 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
..++++++..+...-..+.-+||+|.-. +..+|+..|||+..+.
T Consensus 102 ~~l~~ll~~~~~g~l~~~i~~Visn~~~--~~~~A~~~gIp~~~~~ 145 (286)
T 3n0v_A 102 HCLNDLLYRQRIGQLGMDVVAVVSNHPD--LEPLAHWHKIPYYHFA 145 (286)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEEESSST--THHHHHHTTCCEEECC
T ss_pred CCHHHHHHHHHCCCCCcEEEEEEeCcHH--HHHHHHHcCCCEEEeC
Confidence 5678888876643222346778888643 4457999999988754
No 319
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=33.24 E-value=25 Score=31.52 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 6 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEECC
Confidence 45799999655555 37899999999999988653
No 320
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=33.16 E-value=56 Score=29.75 Aligned_cols=73 Identities=7% Similarity=0.065 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHh
Q 012212 287 LSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEG 366 (468)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~ea 366 (468)
.+.+..+.+.+++.+...+.||.+.++ . .-.++.+++++..+-++|.. ||=+.-...+.-+
T Consensus 62 ~d~~Ra~dL~~a~~Dp~i~aI~~~rGG----------~-------g~~rlL~~lD~~~i~~~PK~--~~GySDiTaL~~a 122 (331)
T 4e5s_A 62 SISSRVQDLHEAFRDPNVKAILTTLGG----------Y-------NSNGLLKYLDYDLIRENPKF--FCGYSDITALNNA 122 (331)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEESCCC----------S-------CGGGGGGGCCHHHHHTSCCE--EEECGGGHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcccc----------c-------cHHHHHhhcChhHHHhCCeE--EEEecchHHHHHH
Confidence 356667788888888888888888777 1 11255677777777777766 8887777777777
Q ss_pred hh--cCCceecccc
Q 012212 367 LS--MGVPFLCWPY 378 (468)
Q Consensus 367 l~--~GvP~v~~P~ 378 (468)
++ .|++.+--|.
T Consensus 123 l~~~~G~~t~hGp~ 136 (331)
T 4e5s_A 123 IYTKTGLVTYSGPH 136 (331)
T ss_dssp HHHHHCBCEEECCC
T ss_pred HHHhhCCcEEEccc
Confidence 77 4777766664
No 321
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=33.03 E-value=36 Score=29.73 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=26.9
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQ--GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~--GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|++++.++. |+- +.+|+.|+++|++|+++...
T Consensus 86 ~~vlVlcG~GNNGGDG---lv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQG---ISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCeEEEEEec
Confidence 48999987654 443 68899999999999998653
No 322
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=32.94 E-value=31 Score=29.92 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=26.6
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQ--GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~--GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|++++.++. |+- +.+|+.|+++|++|+++...
T Consensus 59 ~~v~VlcG~GNNGGDG---lv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDG---LVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCeEEEEEcC
Confidence 58998887654 443 67899999999999998653
No 323
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=32.88 E-value=23 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+.+|+++-. |.+- ..+++.|.++||+|+++...
T Consensus 6 ~~~v~I~G~---G~iG--~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGL---GRFG--GSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECC---SHHH--HHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECC---CHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 457887753 4333 46789999999999988764
No 324
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=32.78 E-value=27 Score=31.91 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+++..|+++-.+..| +..|..|+++|++|+++-..
T Consensus 1 M~~~~dvvIIG~G~~G-----l~~A~~La~~G~~V~vlE~~ 36 (369)
T 3dme_A 1 MSTDIDCIVIGAGVVG-----LAIARALAAGGHEVLVAEAA 36 (369)
T ss_dssp --CCEEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred CCCcCCEEEECCCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 6666788888655433 67788999999999999765
No 325
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=32.77 E-value=22 Score=32.27 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++||.|+-.+..| .++|..|+++||+|+++...
T Consensus 6 ~~kI~vIGaG~MG-----~~iA~~la~~G~~V~l~d~~ 38 (319)
T 2dpo_A 6 AGDVLIVGSGLVG-----RSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSC
T ss_pred CceEEEEeeCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 4789999666555 47899999999999998664
No 326
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=32.74 E-value=2.2e+02 Score=23.80 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=55.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPL 82 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (468)
+||+++.++..+ -+.+|.+++.+. +|+|..+.+........+...+ .++.+..++.. ...+.
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~------~gIp~~~~~~~------~~~~r- 64 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQ------AGIATHTLIAS------AFDSR- 64 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHH------TTCEEEECCGG------GCSSH-
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHH------cCCcEEEeCcc------cccch-
Confidence 478776554443 477788887765 5888766655322222211111 55776654421 00010
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc-cHHHHHHHhCCceEEEcc
Q 012212 83 KLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG-SALEVAESMGIARAAVVP 140 (468)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~-~~~~~A~~lgiP~v~~~~ 140 (468)
.... .++++.+++ .+||+||+=.+.. -...+-......++-+++
T Consensus 65 -------~~~~---~~~~~~l~~----~~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 109 (212)
T 1jkx_A 65 -------EAYD---RELIHEIDM----YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHP 109 (212)
T ss_dssp -------HHHH---HHHHHHHGG----GCCSEEEESSCCSCCCHHHHHHTTTSEEEEES
T ss_pred -------hhcc---HHHHHHHHh----cCCCEEEEeChhhhCCHHHHhhccCCEEEEcc
Confidence 1111 234455554 4599999876532 344444555566776665
No 327
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=32.69 E-value=2.4e+02 Score=25.37 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECCcc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~~~ 43 (468)
+++||.++-. |++-- .+|..|+.+|| +|+++-....
T Consensus 6 ~~~kI~viGa---G~vG~--~~a~~l~~~~~~~v~L~Di~~~ 42 (324)
T 3gvi_A 6 ARNKIALIGS---GMIGG--TLAHLAGLKELGDVVLFDIAEG 42 (324)
T ss_dssp CCCEEEEECC---SHHHH--HHHHHHHHTTCCEEEEECSSSS
T ss_pred cCCEEEEECC---CHHHH--HHHHHHHhCCCCeEEEEeCCch
Confidence 4578988853 54433 58888999999 8888876553
No 328
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=32.59 E-value=1e+02 Score=23.48 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=31.6
Q ss_pred cCCceeccccccchhhhHHHHHHHhh-ceeEeeccCCCccCHHHHHHHHHHHhcChHHH
Q 012212 369 MGVPFLCWPYFSDQYQNRNYICEAWK-IGLQFFADENGIITRQEIQRKVLTLLKNDDIR 426 (468)
Q Consensus 369 ~GvP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r 426 (468)
..+|+|++--..|.. ...+..+. | +--.+.+- ++.++|.++|+++++..++.
T Consensus 75 ~~~~ii~~s~~~~~~-~~~~~~~~-g~~~~~l~KP----~~~~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 75 PNSVYLMLTGNQDLT-TAMEAVNE-GQVFRFLNKP----CQMSDIKAAINAGIKQYDLV 127 (151)
T ss_dssp SSCEEEEEECGGGHH-HHHHHHHH-TCCSEEEESS----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHH-HHHHHHHc-CCeeEEEcCC----CCHHHHHHHHHHHHHHHHHH
Confidence 467777765443333 33334443 6 53334332 78999999999999755543
No 329
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=32.53 E-value=38 Score=28.27 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||++.- +.|-+- ..|++.|.++||+|+.++-..
T Consensus 1 M~ilItG--atG~iG--~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 1 MKIFIVG--STGRVG--KSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp CEEEEES--TTSHHH--HHHHHHHTTSSCEEEEEESSG
T ss_pred CeEEEEC--CCCHHH--HHHHHHHHHCCCEEEEEECCc
Confidence 3677663 333332 588999999999999998754
No 330
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.53 E-value=1.3e+02 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=42.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc---chHHHHHhhhhhccCCCCCeEEEEcCCC
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF---IHKKIIASLQEKAEDSSSQIKLVTIPDG 70 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~---~~~~i~~~~~~~~~~~~~~i~~~~~~~~ 70 (468)
|+|+..+...|-.-+..+|+.|++.|..|++++... +.+.+++...........+-++..+|++
T Consensus 111 Ilf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~g 177 (268)
T 4b4t_W 111 VAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPG 177 (268)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCCC
Confidence 456666777888889999999999999999888763 3333433221111122356778888754
No 331
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=32.49 E-value=52 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCCE-EEEEcCCCccChHHHHHHHHHHH-HCCCEEEEEECCc
Q 012212 3 RQPH-VLVIPYPAQGHVAPLMKLATKIA-ERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~-Il~~~~~~~GH~~p~~~LA~~L~-~rGH~Vt~~~~~~ 42 (468)
.||| |++.- +.|-+ -..+++.|. ++||+|+.+.-..
T Consensus 3 ~mmk~vlVtG--asg~i--G~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILG--AAGQI--AQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEES--TTSHH--HHHHHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEe--CCcHH--HHHHHHHHHhcCCceEEEEecCc
Confidence 3455 55553 22322 358899999 8999999988653
No 332
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=32.49 E-value=46 Score=29.69 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 13 ~ilVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYIG--NHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECTT
T ss_pred eEEEE--CCCchHH--HHHHHHHHHCCCcEEEEECCC
Confidence 66666 3445443 478899999999999988765
No 333
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=32.44 E-value=1.9e+02 Score=23.04 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=78.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +-...++....++..+..+-+.+... +..|+.+.+. +- =.....++++|
T Consensus 5 ~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa------HR~p~~~~~~----------~~---~a~~~g~~ViI 63 (163)
T 3ors_A 5 KVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSA------HRTPKMMVQF----------AS---EARERGINIII 63 (163)
T ss_dssp CEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTSHHHHHHH----------HH---HTTTTTCCEEE
T ss_pred eEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECC------cCCHHHHHHH----------HH---HHHhCCCcEEE
Confidence 4666677764 56678888889998888766665543 4555544211 10 01112234477
Q ss_pred eccCc----hhHHHhhhcCCceeccccccc---hhhhHHHHHHHh--hcee-EeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSD---QYQNRNYICEAW--KIGL-QFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~D---Q~~na~rv~~~l--G~g~-~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
.=+|. .++..++ .-+|+|.+|.... -.+--.-+.. + |+.+ ++..++.+-.++-.++..|. -++|+++
T Consensus 64 a~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~Il-~~~d~~l 140 (163)
T 3ors_A 64 AGAGGAAHLPGMVASL-TTLPVIGVPIETKSLKGIDSLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARML-SIQNPSL 140 (163)
T ss_dssp EEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHHH-HTTCTHH
T ss_pred EECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHHH-hCCCHHH
Confidence 76664 3555444 6689999997433 1111111222 2 4411 11222101145555655553 3468999
Q ss_pred HHHHHHHHHHHHHH
Q 012212 426 RSNSLKLKEVARKS 439 (468)
Q Consensus 426 r~~a~~l~~~~~~~ 439 (468)
+++.+..++.+++.
T Consensus 141 ~~kl~~~r~~~~~~ 154 (163)
T 3ors_A 141 VEKLNQYESSLIQK 154 (163)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888774
No 334
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.40 E-value=40 Score=24.89 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
+++||+++|..|.|--.-...+=++..++|.+|.+..
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 5789999998887555555555566667788888755
No 335
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=32.28 E-value=55 Score=26.07 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=23.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQK 304 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (468)
+.|+++||....+.+.++..++.+.+...
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~~ 30 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIPE 30 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCCC
Confidence 68999999876677788888888877543
No 336
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=32.27 E-value=42 Score=29.43 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=26.9
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQ--GHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~--GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+|++++.++. |+- +.+|+.|+++|++|+++...
T Consensus 80 ~~VlVlcG~GNNGGDG---lv~AR~L~~~G~~V~V~~~~ 115 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDG---LVCARHLKLFGYQPTIYYPK 115 (265)
T ss_dssp CEEEEEECSSHHHHHH---HHHHHHHHHTTCEEEEECCS
T ss_pred CeEEEEECCCCCHHHH---HHHHHHHHHCCCcEEEEEeC
Confidence 48999887764 443 68899999999999998653
No 337
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=32.25 E-value=43 Score=29.94 Aligned_cols=35 Identities=3% Similarity=0.053 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIY--GGTGYIG--KFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEE--cCCchhH--HHHHHHHHhCCCcEEEEECCc
Confidence 4567766 3445543 368899999999999998764
No 338
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=32.01 E-value=23 Score=32.74 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.4
Q ss_pred CCCCceeeccCchhHHHhhh----cCCceecc
Q 012212 349 SSVACFISHCGWNSTMEGLS----MGVPFLCW 376 (468)
Q Consensus 349 ~~~~~~I~hGG~~s~~eal~----~GvP~v~~ 376 (468)
..++++|+=||=||+..|.. .++|++.+
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGi 138 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQGSVPPVMAF 138 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCSSSCCCEEEE
T ss_pred cCCCEEEEEcChHHHHHHHHHhccCCCCEEEE
Confidence 34566999999999999976 35888776
No 339
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=31.89 E-value=2.7e+02 Score=24.61 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=57.4
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCc
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESL-QKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVAC 353 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 353 (468)
.+..|+.|.+.. ..+.++.+. +.+++.+.... ..-.++..+.+. -+-...+++..+++++
T Consensus 12 ~igiIG~G~~g~-------~~~~~l~~~~~~~~v~v~d~~----------~~~~~~~~~~~~--~~~~~~~~l~~~~~D~ 72 (315)
T 3c1a_A 12 RLALIGAGRWGK-------NYIRTIAGLPGAALVRLASSN----------PDNLALVPPGCV--IESDWRSVVSAPEVEA 72 (315)
T ss_dssp EEEEEECTTTTT-------THHHHHHHCTTEEEEEEEESC----------HHHHTTCCTTCE--EESSTHHHHTCTTCCE
T ss_pred eEEEECCcHHHH-------HHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHhhCc--ccCCHHHHhhCCCCCE
Confidence 378899988753 234455444 34455555433 111111122222 2345677887666776
Q ss_pred eeeccCc----hhHHHhhhcCCceecc-cccc--ch-hhhHHHHHHHhhceeEee
Q 012212 354 FISHCGW----NSTMEGLSMGVPFLCW-PYFS--DQ-YQNRNYICEAWKIGLQFF 400 (468)
Q Consensus 354 ~I~hGG~----~s~~eal~~GvP~v~~-P~~~--DQ-~~na~rv~~~lG~g~~l~ 400 (468)
++----. -.+.+++.+|+++++= |... ++ ..-.+.++++ |+-+.+.
T Consensus 73 V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~-g~~~~~~ 126 (315)
T 3c1a_A 73 VIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKAT-GVMVWVE 126 (315)
T ss_dssp EEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHH-CCCEEEE
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 7764443 3466789999998865 7643 23 2233334454 6655554
No 340
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=31.76 E-value=14 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.2
Q ss_pred CchhHHHhhhcCCceec
Q 012212 359 GWNSTMEGLSMGVPFLC 375 (468)
Q Consensus 359 G~~s~~eal~~GvP~v~ 375 (468)
|.|++...|..|.|.++
T Consensus 1 giGa~LKVLa~~LP~li 17 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALI 17 (26)
T ss_pred CchHHHHHHHccchHHH
Confidence 67888889999998765
No 341
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=31.75 E-value=34 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.++||.|+-.+..| ..+|+.|.+.||+|+++...
T Consensus 29 ~~~~I~iIG~G~mG-----~~~a~~l~~~g~~V~~~~~~ 62 (316)
T 2uyy_A 29 TDKKIGFLGLGLMG-----SGIVSNLLKMGHTVTVWNRT 62 (316)
T ss_dssp CSSCEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred CCCeEEEEcccHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 34789998655544 35788899999999887654
No 342
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=31.71 E-value=37 Score=30.69 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|||.|+-.+..| ..+|..|.++||+|+++..
T Consensus 1 m~I~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMG-----SALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEEc
Confidence 478888665555 3678899999999999876
No 343
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=31.64 E-value=31 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+||.|+-.+..| ..+|+.|+++||+|++.....
T Consensus 19 ~~kIgiIG~G~mG-----~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVG-----RTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCCh
Confidence 4789998555444 367999999999999987543
No 344
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=31.52 E-value=45 Score=28.42 Aligned_cols=38 Identities=5% Similarity=0.026 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++||++...-.--..-+-+....+.++|++|++++-.
T Consensus 1 m~~vL~v~aHPDDe~l~~ggtia~~~~~G~~v~vv~lT 38 (227)
T 1uan_A 1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeCCCcHHHhHHHHHHHHHhCCCcEEEEEEc
Confidence 56777665444434555666666777899998776543
No 345
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=31.51 E-value=2.3e+02 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~ 41 (468)
+++||.++-. |++ -..+|..|+.+|| +|+++-..
T Consensus 7 ~~~kv~ViGa---G~v--G~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGA---GFT--GATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECC---SHH--HHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECC---CHH--HHHHHHHHHhCCCCeEEEEecc
Confidence 4578888843 544 3468888889999 99998776
No 346
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=31.45 E-value=71 Score=26.79 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
..++++++.+.+..-..+.-+||+|.-...+...|+..|||+..+.
T Consensus 19 snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 19 SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFK 64 (209)
T ss_dssp HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeC
Confidence 3466677776543211346789998655567789999999998754
No 347
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=31.41 E-value=44 Score=28.88 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=30.4
Q ss_pred EEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 6 HVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 6 ~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.|.|+ +-++.|-..-...||..|+++|++|.++-.+..
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34443 455669999999999999999999999977653
No 348
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=31.39 E-value=58 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCceEEEecCCcc--cHHHHHHHh---------CCceEEEcccc
Q 012212 110 EPIRCVIADVTVG--SALEVAESM---------GIARAAVVPFG 142 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~l---------giP~v~~~~~~ 142 (468)
.+||+||.|...+ .+..+++.+ .+|.++++...
T Consensus 57 ~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 57 EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 4599999997655 455555444 37888876543
No 349
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=31.37 E-value=90 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
.+||+|+-.+..| ..+|+.|+++||+|+..=.
T Consensus 9 ~k~v~viG~G~sG-----~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 9 NKKVLVLGLARSG-----EAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TCEEEEECCTTTH-----HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeeCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 4689999775543 2469999999999999865
No 350
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=31.31 E-value=60 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|++.|||+++... .......+.|.++||+|.+..
T Consensus 4 ~~~~mki~v~~~~-----~~~~~~~~~L~~~g~~v~~~~ 37 (300)
T 2rir_A 4 MLTGLKIAVIGGD-----ARQLEIIRKLTEQQADIYLVG 37 (300)
T ss_dssp CCCSCEEEEESBC-----HHHHHHHHHHHHTTCEEEEES
T ss_pred cccCCEEEEECCC-----HHHHHHHHHHHhCCCEEEEEe
Confidence 6667899888432 355677899999999998764
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=31.23 E-value=81 Score=25.39 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|..|.+....+.|-..-+..|++.|.++|++|.++.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3445577777789999999999999999999999987654
No 352
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=31.21 E-value=45 Score=28.32 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCEEE-EE-cCCCccChHHHHHHHHHHHHC-CCEEEEEECCcc
Q 012212 3 RQPHVL-VI-PYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il-~~-~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~ 43 (468)
+++|++ |. +-+|.|-..-...||..|+++ |++|.++-.+..
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 345655 44 445779999999999999999 999999987654
No 353
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=31.20 E-value=42 Score=29.61 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+||.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 2 ~~i~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIGLGIMG-----SAMAKNLVKAGCSVTIWNRS 33 (287)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEeecHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 688888555444 46799999999999988654
No 354
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=31.13 E-value=62 Score=27.92 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++|.++++..+.| --.++|+.|+++|++|+++....
T Consensus 5 ~~~k~vlVTGas~g---IG~~~a~~l~~~G~~v~~~~~~~ 41 (264)
T 3i4f_A 5 RFVRHALITAGTKG---LGKQVTEKLLAKGYSVTVTYHSD 41 (264)
T ss_dssp -CCCEEEETTTTSH---HHHHHHHHHHHTTCEEEEEESSC
T ss_pred cccCEEEEeCCCch---hHHHHHHHHHHCCCEEEEEcCCC
Confidence 45677777655431 23588999999999999886543
No 355
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=30.90 E-value=41 Score=30.76 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|.++..|+++-.+..| +.+|.+|+++|++|+++-..
T Consensus 3 m~~~~dVvVIG~Gi~G-----ls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIG-----LSSALILARKGYSVHILARD 38 (363)
T ss_dssp CCCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCEEEECCCHHH-----HHHHHHHHhCCCEEEEEecc
Confidence 3456789988655433 57788999999999999754
No 356
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=30.83 E-value=82 Score=25.09 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=24.8
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQK 304 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (468)
.+|+++||....+.+.++..++.+.+.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (159)
T 2qx0_A 3 RVYIALGSNLAMPLQQVSAAREALAHLPR 31 (159)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHTCTT
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCCC
Confidence 48999999987788999999999987643
No 357
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=30.72 E-value=2.7e+02 Score=26.24 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=75.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCC-Cc
Q 012212 275 SVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSV-AC 353 (468)
Q Consensus 275 ~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~-~~ 353 (468)
+.|-|-+||.. +-...+++...++..|..+-+-+... +..|+.+.+ ++-+-. .-.+ ++
T Consensus 266 ~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~sa------HR~p~~~~~----------~~~~~~---~~g~~~v 324 (425)
T 2h31_A 266 CRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTSA------HKGPDETLR----------IKAEYE---GDGIPTV 324 (425)
T ss_dssp CEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTCHHHHHH----------HHHHHH---TTCCCEE
T ss_pred CeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeeec------cCCHHHHHH----------HHHHHH---HCCCCeE
Confidence 46777778764 56677888888998888766665533 455554421 111100 0112 13
Q ss_pred eeeccCc----hhHHHhhhcCCceeccccccchhhhHH--H--HHH--HhhceeEeeccCCCccCHHHHHHHHHHHhcCh
Q 012212 354 FISHCGW----NSTMEGLSMGVPFLCWPYFSDQYQNRN--Y--ICE--AWKIGLQFFADENGIITRQEIQRKVLTLLKND 423 (468)
Q Consensus 354 ~I~hGG~----~s~~eal~~GvP~v~~P~~~DQ~~na~--r--v~~--~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~ 423 (468)
+|.=+|. .++..++ .-+|+|.+|... ..++. - +.. . |+.+..=... .++-.++..|. -++|+
T Consensus 325 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~--~~~G~daLls~vqmp~-g~pvatv~~~---~nAa~~A~~Il-~~~~~ 396 (425)
T 2h31_A 325 FVAVAGRSNGLGPVMSGN-TAYPVISCPPLT--PDWGVQDVWSSLRLPS-GLGCSTVLSP---EGSAQFAAQIF-GLSNH 396 (425)
T ss_dssp EEEECCSSCCHHHHHHHH-CSSCEEECCCCC--TTTHHHHGGGTSSCCS-SCCCEECCCH---HHHHHHHHHHH-HTTCH
T ss_pred EEEEcCcccchHhHHhcc-CCCCEEEeeCcc--ccccHHHHHHHhcCCC-CCceEEecCc---hHHHHHHHHHH-ccCCH
Confidence 6666654 3555554 478999999742 22221 1 111 1 3332111111 45666666664 56788
Q ss_pred HHHHHHHHHHHHHHHH
Q 012212 424 DIRSNSLKLKEVARKS 439 (468)
Q Consensus 424 ~~r~~a~~l~~~~~~~ 439 (468)
+++++.+..+..+...
T Consensus 397 ~l~~kl~~~~~~~~~~ 412 (425)
T 2h31_A 397 LVWSKLRASILNTWIS 412 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777663
No 358
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=30.57 E-value=1.7e+02 Score=26.00 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=21.4
Q ss_pred ceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 112 IRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 112 pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
.|++|+.- .+...+|..+|+|++.+..
T Consensus 254 a~l~I~~D--SG~~HlAaa~g~P~v~lfg 280 (326)
T 2gt1_A 254 AKFVVSVD--TGLSHLTAALDRPNITVYG 280 (326)
T ss_dssp CSEEEEES--SHHHHHHHHTTCCEEEEES
T ss_pred CCEEEecC--CcHHHHHHHcCCCEEEEEC
Confidence 79999875 3467788889999998863
No 359
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=30.54 E-value=61 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQ 303 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (468)
.+|+++||....+.+.++..++++.+.+
T Consensus 2 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 1f9y_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 5899999987667888888899888764
No 360
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=30.54 E-value=52 Score=31.66 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.+.+||+|+-.++.| +.++|+.|.++|++|+..=..
T Consensus 16 ~~~~~i~viG~G~sG----~s~~A~~l~~~G~~V~~~D~~ 51 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAG----MSGIAEILLNEGYQISGSDIA 51 (475)
T ss_dssp TTCCEEEEETTTSTT----HHHHHHHHHHHTCEEEEEESC
T ss_pred ccCCEEEEEeecHHH----HHHHHHHHHhCCCEEEEECCC
Confidence 345789999888665 456899999999999986543
No 361
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=30.44 E-value=95 Score=29.98 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=29.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhh
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASL 51 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~ 51 (468)
+++++.- ++-.-+..+|+.|++.|.+|. ++......+++.|
T Consensus 25 ~raLISV----~DK~glv~~Ak~L~~lGfeI~--ATgGTak~L~e~G 65 (534)
T 4ehi_A 25 MRALLSV----SDKEGIVEFGKELENLGFEIL--STGGTFKLLKENG 65 (534)
T ss_dssp CEEEEEE----SSCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHHTT
T ss_pred cEEEEEE----cccccHHHHHHHHHHCCCEEE--EccHHHHHHHHCC
Confidence 4454443 455668899999999998874 6667777888854
No 362
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=30.23 E-value=1.5e+02 Score=27.11 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCC-----CccChHHHHHHHHHHHHCC-CEEEEEECCcchH---HHHHhhhhhccCCCCCeEEEEcCCCC
Q 012212 1 MSRQPHVLVIPYP-----AQGHVAPLMKLATKIAERA-IKVTVVNTQFIHK---KIIASLQEKAEDSSSQIKLVTIPDGL 71 (468)
Q Consensus 1 m~~~~~Il~~~~~-----~~GH~~p~~~LA~~L~~rG-H~Vt~~~~~~~~~---~i~~~~~~~~~~~~~~i~~~~~~~~~ 71 (468)
|++|.+..|...| +.|= ...|.+.+.+.| .+|.+++.+.... .+.+.. ....+..+....
T Consensus 2 ~~~M~~f~~~~~p~~i~~G~g~---~~~l~~~l~~~g~~r~liVtd~~~~~~~~~v~~~L--------~~~~~~~f~~v~ 70 (358)
T 3jzd_A 2 MKSSQPFIYEAHAARVVFGAGS---SSQVAAEVERLGAKRALVLCTPNQQAEAERIADLL--------GPLSAGVYAGAV 70 (358)
T ss_dssp ---CCCEEEEECCEEEEESTTG---GGGHHHHHHHTTCSCEEEECCGGGHHHHHHHHHHH--------GGGEEEEECCCC
T ss_pred CCCccCceeecCCceEEECCCH---HHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHh--------ccCCEEEecCCc
Confidence 5555556565233 2332 345677777778 6788888765432 222222 112333333221
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcccc
Q 012212 72 ELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVPFG 142 (468)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~ 142 (468)
+.. . . +.+.++++.+++ .++|+||.=.-.. .+-.+|...++|+|.+-+..
T Consensus 71 ~~p-----~-~-----------~~v~~~~~~~~~----~~~D~IIavGGGsviD~aK~iA~~~~~p~i~IPTT~ 123 (358)
T 3jzd_A 71 MHV-----P-I-----------ESARDATARARE----AGADCAVAVGGGSTTGLGKAIALETGMPIVAIPTTY 123 (358)
T ss_dssp TTC-----B-H-----------HHHHHHHHHHHH----HTCSEEEEEESHHHHHHHHHHHHHHCCCEEEEECSS
T ss_pred CCC-----C-H-----------HHHHHHHHHhhc----cCCCEEEEeCCcHHHHHHHHHHhccCCCEEEEeCCc
Confidence 111 1 1 122333333333 3489998754433 45567778899999988764
No 363
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=30.15 E-value=2.6e+02 Score=25.89 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEE--EEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHH
Q 012212 23 KLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKL--VTIPDGLELQAADREDPLKLGESVARAMRGCLRDLI 100 (468)
Q Consensus 23 ~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 100 (468)
.|.+.+.+.|.+|.+++.+...+...+...+.. . .++.+ ..++.+ + . . +.+.++.
T Consensus 43 ~l~~~l~~~g~r~liVtd~~~~~~~~~~v~~~L--~-~g~~~~~~~~~~~-------p-~-~-----------~~v~~~~ 99 (387)
T 3uhj_A 43 KLAAYLAPLGKRALVLIDRVLFDALSERIGKSC--G-DSLDIRFERFGGE-------C-C-T-----------SEIERVR 99 (387)
T ss_dssp TTHHHHGGGCSEEEEEECTTTHHHHHHHC---------CCEEEEEECCSS-------C-S-H-----------HHHHHHH
T ss_pred HHHHHHHHcCCEEEEEECchHHHHHHHHHHHHH--H-cCCCeEEEEcCCC-------C-C-H-----------HHHHHHH
Confidence 456667777889999998876554322211111 1 13333 222211 1 1 1 1233334
Q ss_pred HHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcccc
Q 012212 101 EKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVPFG 142 (468)
Q Consensus 101 ~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~ 142 (468)
+.+++ .++|+||.=.-.. .+-.+|...++|+|.+-+..
T Consensus 100 ~~~~~----~~~d~IIavGGGs~~D~AK~iA~~~~~p~i~IPTTa 140 (387)
T 3uhj_A 100 KVAIE----HGSDILVGVGGGKTADTAKIVAIDTGARIVIAPTIA 140 (387)
T ss_dssp HHHHH----HTCSEEEEESSHHHHHHHHHHHHHTTCEEEECCSSC
T ss_pred HHHhh----cCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecCcc
Confidence 44443 2489998765443 45567888999999987764
No 364
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=29.94 E-value=70 Score=29.84 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++++||+++-..+.- ..-+....+.|.+.|++|++++..
T Consensus 9 m~~~~kv~ill~dg~e-~~E~~~~~~~l~~ag~~v~~vs~~ 48 (396)
T 3uk7_A 9 MANSRTVLILCGDYME-DYEVMVPFQALQAFGITVHTVCPG 48 (396)
T ss_dssp --CCCEEEEECCTTEE-HHHHHHHHHHHHHTTCEEEEECTT
T ss_pred hhcCCeEEEEeCCCcc-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4556799988877665 345666778899999999999985
No 365
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=29.86 E-value=77 Score=29.21 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|+||+++..+ ..-..++++|.+.||+|.++.+..
T Consensus 1 M~~Ililg~g-----~~g~~~~~a~~~~G~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIGGG-----QLGKMMTLEAKKMGFYVIVLDPTP 34 (380)
T ss_dssp CCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3589988643 235678888999999999988754
No 366
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=29.83 E-value=38 Score=32.41 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||.++-.+..| ..+|..|+++||+|+++....
T Consensus 3 mkI~VIG~G~vG-----~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHH-----HHHHHHHHhcCCEEEEEECCH
Confidence 699998554333 578999999999999887653
No 367
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.81 E-value=2.6e+02 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.4
Q ss_pred CceEEE-ecCCcc-cHHHHHHHhCCceEEEccc
Q 012212 111 PIRCVI-ADVTVG-SALEVAESMGIARAAVVPF 141 (468)
Q Consensus 111 ~pDlvi-~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (468)
.||+|| +|+..- .+..=|..+|||+|.+..+
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecC
Confidence 588876 465433 5666788999999998753
No 368
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.80 E-value=96 Score=23.11 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHH-CCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAE-RAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~-rGH~Vt~~~~ 40 (468)
|.++++|+++ ..+-.-...|.+.|.+ .|++|..+..
T Consensus 1 M~~~~~iliv----dd~~~~~~~l~~~L~~~~~~~v~~~~~ 37 (140)
T 3lua_A 1 MSLDGTVLLI----DYFEYEREKTKIIFDNIGEYDFIEVEN 37 (140)
T ss_dssp --CCCEEEEE----CSCHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred CCCCCeEEEE----eCCHHHHHHHHHHHHhccCccEEEECC
No 369
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=29.76 E-value=34 Score=29.71 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=34.5
Q ss_pred CCCEEEEEcCC---CccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 3 RQPHVLVIPYP---AQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 3 ~~~~Il~~~~~---~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.+||.+|++.+ +.|--.-...|+..|..||++||..-.+++.+
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlN 66 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN 66 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCcee
Confidence 45788888766 44777788999999999999999987766543
No 370
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.67 E-value=50 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCEEEEE--cCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 3 RQPHVLVI--PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 3 ~~~~Il~~--~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
++++++.+ +-+|.|-..-...||..|+ +|++|.++-.+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 45666655 3446699999999999999 99999999876543
No 371
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=29.64 E-value=73 Score=22.73 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
..+|+++|..+ ......+..|.+.||+|.++.+
T Consensus 56 ~~~iv~yC~~g----~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 56 NEIYYIVCAGG----VRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp TSEEEEECSSS----SHHHHHHHHHHTTTCEEEEETT
T ss_pred CCeEEEECCCC----hHHHHHHHHHHHCCCCeEEeCC
Confidence 35788888544 3466788999999998887654
No 372
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=29.62 E-value=78 Score=26.32 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=51.0
Q ss_pred chhhhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccCh
Q 012212 263 SCLSWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQ 342 (468)
Q Consensus 263 ~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~ 342 (468)
++.++|.++. ...|+-|.. .-.+....++..+.+.+++=+....... .+.+... -+..++++....
T Consensus 44 ~lg~~La~~g---~~lV~GGG~----~GlM~a~~~gA~~~GG~viGv~p~~l~~---~e~~~~~----~~~~i~~~~~~~ 109 (199)
T 3qua_A 44 EVGSSIAARG---WTLVSGGGN----VSAMGAVAQAARAKGGHTVGVIPKALVH---RELADVD----AAELIVTDTMRE 109 (199)
T ss_dssp HHHHHHHHTT---CEEEECCBC----SHHHHHHHHHHHHTTCCEEEEEEGGGTT---TTTBCTT----SSEEEEESSHHH
T ss_pred HHHHHHHHCC---CEEEECCCc----cCHHHHHHHHHHHcCCcEEEEeCchhhh---ccccCCC----CCeeEEcCCHHH
Confidence 3445555443 344544332 1245556666666666666554332100 0111100 123455555544
Q ss_pred -HHHh-cCCCCCceeeccCchhHHHhhh---------cCCceecccc
Q 012212 343 -EKVL-GHSSVACFISHCGWNSTMEGLS---------MGVPFLCWPY 378 (468)
Q Consensus 343 -~~ll-~~~~~~~~I~hGG~~s~~eal~---------~GvP~v~~P~ 378 (468)
..++ .+++ ..++--||.||+-|... +++|++.+-.
T Consensus 110 Rk~~m~~~sd-a~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~ 155 (199)
T 3qua_A 110 RKREMEHRSD-AFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDP 155 (199)
T ss_dssp HHHHHHHHCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred HHHHHHHhcC-ccEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcC
Confidence 3333 3444 34666788899888743 6999998853
No 373
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=29.57 E-value=2.2e+02 Score=22.91 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +-...++....+++.+..+-+.+... +..|+.+.+. +-. ...-.++++|
T Consensus 14 ~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~Sa------HR~p~~~~~~----------~~~---a~~~g~~ViI 72 (174)
T 3kuu_A 14 KIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSA------HRTPDRLFSF----------AEQ---AEANGLHVII 72 (174)
T ss_dssp CEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT------TTCHHHHHHH----------HHH---TTTTTCSEEE
T ss_pred cEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc------cCCHHHHHHH----------HHH---HHhCCCcEEE
Confidence 3666677764 56678888889998888776666543 4555544211 100 1112234477
Q ss_pred eccCc----hhHHHhhhcCCceeccccccc---hhhhHHHHHHHh--hcee-EeeccCCCccCHHHHHHHHHHHhcChHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSD---QYQNRNYICEAW--KIGL-QFFADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~D---Q~~na~rv~~~l--G~g~-~l~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
.=+|. .++..++ .-+|+|.+|...- -.+--.-+.. + |+.+ ++..++.+-.++-.++..|. -+.|+++
T Consensus 73 a~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vq-mP~GvPVatV~I~~a~~~nAa~lAa~IL-a~~d~~l 149 (174)
T 3kuu_A 73 AGNGGAAHLPGMLAAK-TLVPVLGVPVQSAALSGVDSLYSIVQ-MPRGIPVGTLAIGKAGAANAALLAAQIL-ALHDTEL 149 (174)
T ss_dssp EEEESSCCHHHHHHHT-CSSCEEEEEECCTTTTTHHHHHHHHT-CCTTSCCEECCSSHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred EECChhhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHhhh-CCCCCeeEEEEeCCccchHHHHHHHHHH-cCCCHHH
Confidence 76664 3444443 3689999997432 1111111222 1 4321 11221101144555655553 4578999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 012212 426 RSNSLKLKEVARKSLLGG 443 (468)
Q Consensus 426 r~~a~~l~~~~~~~~~~~ 443 (468)
+++.+..++.+++.+.+.
T Consensus 150 ~~kl~~~r~~~~~~v~~~ 167 (174)
T 3kuu_A 150 AGRLAHWRQSQTDDVLDN 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999988765444
No 374
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=29.56 E-value=2.2e+02 Score=25.34 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=34.1
Q ss_pred CE-EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchH
Q 012212 5 PH-VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHK 45 (468)
Q Consensus 5 ~~-Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~ 45 (468)
.+ |+++..+|.|-..-+..||..|...|.+|.++..+.++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 145 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH
Confidence 44 456666788999999999999999999999999876643
No 375
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=29.48 E-value=41 Score=31.89 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHH---CCCEEEEEECCcc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAE---RAIKVTVVNTQFI 43 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~---rGH~Vt~~~~~~~ 43 (468)
|..|.+|+++-.+..| +..|..|++ +||+||++.....
T Consensus 1 M~~m~~vvIIGgG~aG-----l~aA~~L~~~~~~g~~Vtlie~~~~ 41 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGG-----MPAAYEMKEALGSGHEVTLISANDY 41 (437)
T ss_dssp CTTSCEEEEECCSTTH-----HHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred CCCCCcEEEECCcHHH-----HHHHHHHhccCCCcCEEEEEeCCCC
Confidence 7778899888544333 244555665 8999999987653
No 376
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=29.41 E-value=3.1e+02 Score=25.20 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHCC-CEEEEEECCc
Q 012212 22 MKLATKIAERA-IKVTVVNTQF 42 (468)
Q Consensus 22 ~~LA~~L~~rG-H~Vt~~~~~~ 42 (468)
..|.+.+.+.| .+|.+++.+.
T Consensus 22 ~~l~~~l~~~g~~~~livtd~~ 43 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDKG 43 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCTT
T ss_pred HHHHHHHHHcCCCEEEEEECcc
Confidence 35667777777 8888888764
No 377
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=29.37 E-value=2.6e+02 Score=25.22 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHhhhcCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcC
Q 012212 363 TMEGLSMGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLG 442 (468)
Q Consensus 363 ~~eal~~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~ 442 (468)
+..|-.+|+|+-+++-+.-.+..+..... +|+--. . ++++++. .++.++..-++ +.+++++++..+.
T Consensus 240 v~aar~aG~~vgvcge~~~dp~~~~~l~~-lG~~~~----s---i~p~~i~-~~~~~~~~~~~-~~~~~~~~~~l~~--- 306 (324)
T 2xz9_A 240 IDAAHKEGKFAAMCGEMAGDPLAAVILLG-LGLDEF----S---MSATSIP-EIKNIIRNVEY-EKAKEIAEKALNM--- 306 (324)
T ss_dssp HHHHHHTTCEEEECSGGGGCHHHHHHHHH-HTCCEE----E---ECGGGHH-HHHHHHTTSCH-HHHHHHHHHHHTC---
T ss_pred HHHHHHHCCceeecCccCCCHHHHHHHHH-CCCCEE----E---EChhHHH-HHHHHHHHcCH-HHHHHHHHHHHcC---
Confidence 44556889998776655434455555544 455331 1 6666655 45566665554 4577777777663
Q ss_pred CCchHHHHHHHHHHHH
Q 012212 443 GGSSFRNFESFISDIK 458 (468)
Q Consensus 443 ~g~~~~~~~~~~~~~~ 458 (468)
.....++++++...
T Consensus 307 --~~~~~v~~~~~~~~ 320 (324)
T 2xz9_A 307 --SEAREIEKMMKDVI 320 (324)
T ss_dssp --SCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 45577777777654
No 378
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=29.33 E-value=56 Score=26.63 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCccChHHHHH-HHHHHHH-CCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMK-LATKIAE-RAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~-LA~~L~~-rGH~Vt~~~~~~ 42 (468)
.|+||+++-....|+..-+.. +++.|.+ .|++|.++....
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 467888776666787765544 5777777 899998887654
No 379
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=29.29 E-value=51 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|++||+.- +.|-+ -..|++.|.++||+|+.+..
T Consensus 1 M~~vlVTG--atG~i--G~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 1 MAKLLITG--GCGFL--GSNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp -CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEeC--CCchh--HHHHHHHHHhCCCEEEEEeC
Confidence 35676663 33333 24789999999999999864
No 380
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=29.24 E-value=37 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=22.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|||.|+-.+..|. .+|+.|.+.||+|++..
T Consensus 1 M~I~iIG~G~mG~-----~la~~l~~~g~~V~~~~ 30 (264)
T 1i36_A 1 LRVGFIGFGEVAQ-----TLASRLRSRGVEVVTSL 30 (264)
T ss_dssp CEEEEESCSHHHH-----HHHHHHHHTTCEEEECC
T ss_pred CeEEEEechHHHH-----HHHHHHHHCCCeEEEeC
Confidence 4788885554443 68999999999999853
No 381
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=29.20 E-value=1.3e+02 Score=26.28 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.|+++++..+.| --.++|+.|+++|++|.++.-..
T Consensus 9 ~k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r~~ 43 (285)
T 3sc4_A 9 GKTMFISGGSRG---IGLAIAKRVAADGANVALVAKSA 43 (285)
T ss_dssp TCEEEEESCSSH---HHHHHHHHHHTTTCEEEEEESCC
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEECCh
Confidence 466666655442 23578999999999999887654
No 382
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=29.18 E-value=58 Score=23.93 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=27.5
Q ss_pred CCEEEEE--cCCCccChHHH-HHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVI--PYPAQGHVAPL-MKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~--~~~~~GH~~p~-~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|||+.+ |..|..|.+-. -.|=++-.++||+|.+=+.+.
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs 43 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGA 43 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEET
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 3677755 55677898874 455555557899999988764
No 383
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=29.17 E-value=33 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCEEEEEc-CCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 4 QPHVLVIP-YPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|||||++. .|-.+.-.-...+++.+.+.|++|++.--
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45787654 33332213455667778788998888763
No 384
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=29.16 E-value=38 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCC-CEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERA-IKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rG-H~Vt~~~~~ 41 (468)
++||.|+-.+..| ..+|+.|+++| |+|+++...
T Consensus 24 ~m~IgvIG~G~mG-----~~lA~~L~~~G~~~V~~~dr~ 57 (317)
T 4ezb_A 24 MTTIAFIGFGEAA-----QSIAGGLGGRNAARLAAYDLR 57 (317)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHTTTCSEEEEECGG
T ss_pred CCeEEEECccHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 4789999766555 68899999999 999988754
No 385
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=29.14 E-value=44 Score=28.51 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCc
Q 012212 20 PLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 20 p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
--.++|++|.++|++|+++..+.
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~~ 58 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGPV 58 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCc
Confidence 44689999999999999987654
No 386
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=29.10 E-value=65 Score=28.93 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC-C-CEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER-A-IKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r-G-H~Vt~~~~~~ 42 (468)
+++||+++..+.. .+|++.|++. | ++|..+....
T Consensus 3 ~~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~~ 38 (331)
T 2pn1_A 3 QKPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCSP 38 (331)
T ss_dssp TCCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESCT
T ss_pred ccceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCCC
Confidence 3479999855443 4789999876 7 8988886643
No 387
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=28.97 E-value=67 Score=27.50 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
.|+++++..+.| --.++|+.|+++|++|.+....
T Consensus 9 gk~~lVTGas~g---IG~a~a~~l~~~G~~V~~~~r~ 42 (248)
T 3op4_A 9 GKVALVTGASRG---IGKAIAELLAERGAKVIGTATS 42 (248)
T ss_dssp TCEEEESSCSSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 467777755442 2357899999999999887654
No 388
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=28.95 E-value=2.4e+02 Score=25.13 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=38.2
Q ss_pred ccChHHHhcCCCCCceeeccCc----hhHHHhhhcCCceec-ccc--ccchhhh-HHHHHHHhhceeEeec
Q 012212 339 WAPQEKVLGHSSVACFISHCGW----NSTMEGLSMGVPFLC-WPY--FSDQYQN-RNYICEAWKIGLQFFA 401 (468)
Q Consensus 339 ~~p~~~ll~~~~~~~~I~hGG~----~s~~eal~~GvP~v~-~P~--~~DQ~~n-a~rv~~~lG~g~~l~~ 401 (468)
+-...+++..+++++++----. -.+.+|+.+|+++++ -|+ ..++-.. ...+++. |+-+.+..
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~-~~~~~v~~ 125 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESC-NLFLMEAQ 125 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHc-CCEEEEEE
Confidence 4467889987788878754333 347789999999885 354 3333333 3334453 66555543
No 389
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=28.94 E-value=48 Score=27.70 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~~ 43 (468)
|.||+++-.++...+- +...++.|.++ |++|++++....
T Consensus 3 m~kV~ill~~g~~~~E-~~~~~~~l~~~~~~~v~~vs~~~~ 42 (206)
T 3f5d_A 3 LKKALFLILDQYADWE-GVYLASALNQREDWSVHTVSLDPI 42 (206)
T ss_dssp CEEEEEECCSSBCTTT-SHHHHHHHHTSTTEEEEEEESSSE
T ss_pred ccEEEEEEcCCCcHHH-HHHHHHHHhccCCeEEEEEECCCC
Confidence 6689988888776554 34567788877 999999998753
No 390
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.92 E-value=1.8e+02 Score=22.39 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=20.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 012212 277 VYVAFGSVAVLSQQQFAELALGLESLQKPFL 307 (468)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l 307 (468)
|++|.+. .+...+..++..+.++|++++
T Consensus 27 vliSv~d---~dK~~l~~~a~~l~~lGf~i~ 54 (143)
T 2yvq_A 27 ILIGIQQ---SFRPRFLGVAEQLHNEGFKLF 54 (143)
T ss_dssp EEEECCG---GGHHHHHHHHHHHHTTTCEEE
T ss_pred EEEEecc---cchHHHHHHHHHHHHCCCEEE
Confidence 8887643 356677788889999988754
No 391
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=28.85 E-value=54 Score=29.09 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=23.8
Q ss_pred CCC-CCEEEEEcCCCccChHH-HHHHHHHHHHCCCEEEEEE
Q 012212 1 MSR-QPHVLVIPYPAQGHVAP-LMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~-~~~Il~~~~~~~GH~~p-~~~LA~~L~~rGH~Vt~~~ 39 (468)
|+. |+||+++.-+..++... ...+.+.|.++|++|.+..
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~ 41 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQ 41 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEH
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 553 57899998887655543 6678899999999988754
No 392
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=28.83 E-value=23 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+||+++-.+-.| +.-|..|+++||+|+++--.
T Consensus 1 Mk~VvVIGaG~~G-----L~aA~~La~~G~~V~VlEa~ 33 (501)
T 4dgk_A 1 MKPTTVIGAGFGG-----LALAIRLQAAGIPVLLLEQR 33 (501)
T ss_dssp CCCEEEECCHHHH-----HHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEECCcHHH-----HHHHHHHHHCCCcEEEEccC
Confidence 5578887433222 45578899999999998643
No 393
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=28.82 E-value=60 Score=29.73 Aligned_cols=35 Identities=9% Similarity=-0.169 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
|+||+++..+ .-...+++++.++||+|.++.+...
T Consensus 1 M~~Ililg~g-----~~~~~~~~a~~~~G~~v~~~~~~~~ 35 (365)
T 2z04_A 1 MLTVGILGGG-----QLGWMTILEGRKLGFKFHVLEDKEN 35 (365)
T ss_dssp -CEEEEECCS-----HHHHHHHHHHGGGTCEEEEECSSSS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4688888533 4467889999999999999887543
No 394
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=28.41 E-value=55 Score=31.87 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+||||+.- +.|-+- ..|++.|.++||+|+.++-..
T Consensus 147 ~m~VLVTG--atG~IG--~~l~~~L~~~G~~V~~l~R~~ 181 (516)
T 3oh8_A 147 PLTVAITG--SRGLVG--RALTAQLQTGGHEVIQLVRKE 181 (516)
T ss_dssp CCEEEEES--TTSHHH--HHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEC--CCCHHH--HHHHHHHHHCCCEEEEEECCC
Confidence 68888774 334333 468999999999999998754
No 395
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=28.40 E-value=52 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+.+||.|+-.++.| |..+|+.|+++|++|+..=..
T Consensus 18 ~~~~i~~iGiGg~G----ms~lA~~l~~~G~~V~~sD~~ 52 (524)
T 3hn7_A 18 QGMHIHILGICGTF----MGSLALLARALGHTVTGSDAN 52 (524)
T ss_dssp -CCEEEEETTTSHH----HHHHHHHHHHTTCEEEEEESC
T ss_pred cCCEEEEEEecHhh----HHHHHHHHHhCCCEEEEECCC
Confidence 35789999888776 778999999999999986543
No 396
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=28.39 E-value=1.1e+02 Score=19.04 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=31.0
Q ss_pred eccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 012212 400 FADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIK 458 (468)
Q Consensus 400 ~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (468)
+.+++|.++.+++...+..+- ..-....+.+.++.. ...++..-..++|+..+.
T Consensus 10 D~d~~G~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~-D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 10 DVNGDGAVSYEEVKAFVSKKR----AIKNEQLLQLIFKSI-DADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CTTCSSSCCHHHHHHHHHHHH----HHHHHHHHHHHHHHH-CTTCSSSCCHHHHHHHHT
T ss_pred CCCCCCcccHHHHHHHHHHcc----CCCcHHHHHHHHHHH-CCCCCCCCCHHHHHHHHH
Confidence 455678899999999887763 222233455555553 223333344566665543
No 397
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=28.27 E-value=44 Score=28.11 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.+...|+|+...+ ++..-+..+++.|.++|++|..+-.+.
T Consensus 1 me~g~~vv~lHG~~-~~~~~~~~~~~~l~~~g~~vi~~D~~G 41 (258)
T 3dqz_A 1 MERKHHFVLVHNAY-HGAWIWYKLKPLLESAGHRVTAVELAA 41 (258)
T ss_dssp --CCCEEEEECCTT-CCGGGGTTHHHHHHHTTCEEEEECCTT
T ss_pred CCCCCcEEEECCCC-CccccHHHHHHHHHhCCCEEEEecCCC
Confidence 55556677776544 444557789999999999998876543
No 398
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=28.21 E-value=81 Score=23.59 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|..+++|+++ ..+-.-...|.+.|.+.|++|..+..
T Consensus 1 M~~~~~iLiv----dd~~~~~~~l~~~L~~~g~~v~~~~~ 36 (142)
T 2qxy_A 1 MSLTPTVMVV----DESRITFLAVKNALEKDGFNVIWAKN 36 (142)
T ss_dssp --CCCEEEEE----CSCHHHHHHHHHHHGGGTCEEEEESS
T ss_pred CCCCCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEECC
No 399
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=28.12 E-value=1.1e+02 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.5
Q ss_pred ceEEEecCCcccH------HHHHHHhCCceEEEc
Q 012212 112 IRCVIADVTVGSA------LEVAESMGIARAAVV 139 (468)
Q Consensus 112 pDlvi~D~~~~~~------~~~A~~lgiP~v~~~ 139 (468)
+|+|+.|....++ ..+...+|+|+|.+.
T Consensus 65 ~~vvllDG~g~agfn~~di~~l~~~~~~P~I~V~ 98 (184)
T 2qh9_A 65 IKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVM 98 (184)
T ss_dssp EEEEEESSSEETTTEECCHHHHHHHHCCCEEEEE
T ss_pred CcEEEECCEeeccCCEeCHHHHHHhhCCCEEEEE
Confidence 6999999976632 367788999999876
No 400
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=28.05 E-value=39 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++||+++-.+..| ..+|+.|.+.||+|+++...
T Consensus 28 ~~~I~iiG~G~~G-----~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 28 APKVGILGSGDFA-----RSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp -CCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEccCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 4678888533333 36788999999999987653
No 401
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=28.04 E-value=2.9e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEE
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAA 137 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~ 137 (468)
...+.+++.+++ -.+++.|.... -+..+|..+|+|++.
T Consensus 115 ~~m~~vm~~l~~------~gL~fvDS~Ts~~S~a~~~A~~~gvp~~~ 155 (245)
T 2nly_A 115 KIMRAILEVVKE------KNAFIIDSGTSPHSLIPQLAEELEVPYAT 155 (245)
T ss_dssp HHHHHHHHHHHH------TTCEEEECCCCSSCSHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHH------CCCEEEcCCCCcccHHHHHHHHcCCCeEE
Confidence 445667777765 45999998753 677899999999976
No 402
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.04 E-value=2.9e+02 Score=32.04 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
+...|+++-.++.|-..=..++|.+.+++|++|.|++.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 345788888899999999999999999999999999988653
No 403
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=28.01 E-value=1.5e+02 Score=23.96 Aligned_cols=39 Identities=5% Similarity=0.016 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++||+++..++.. ..-+....+.|.+.|++|++++...
T Consensus 8 ~~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 46 (190)
T 2vrn_A 8 TGKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLEP 46 (190)
T ss_dssp TTCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45789988776554 3456667788889999999999754
No 404
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.98 E-value=61 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCc---cChHHHHH-HHHHHHHCC--CEEEEEECC
Q 012212 4 QPHVLVIPYPAQ---GHVAPLMK-LATKIAERA--IKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~---GH~~p~~~-LA~~L~~rG--H~Vt~~~~~ 41 (468)
||||+++..... |+..-+.. +++.|.++| |+|.++--.
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 468886654443 66665543 566777776 898887753
No 405
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=27.97 E-value=50 Score=27.41 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|||+++- +.|.+- ..+|+.|.++||+|+++...
T Consensus 1 m~i~iiG--a~G~~G--~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLG--GTGNLG--KGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEc--CCCHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 4788774 133332 36789999999999998754
No 406
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=27.96 E-value=1.1e+02 Score=28.91 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAI 33 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH 33 (468)
.|||||++-.++. -.+||+.|.+.++
T Consensus 2 ~~mkvlviG~ggr-----e~ala~~l~~s~~ 27 (431)
T 3mjf_A 2 NAMNILIIGNGGR-----EHALGWKAAQSPL 27 (431)
T ss_dssp -CEEEEEEECSHH-----HHHHHHHHTTCTT
T ss_pred CCcEEEEECCCHH-----HHHHHHHHHhCCC
Confidence 4689999976654 4478999998875
No 407
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=27.67 E-value=60 Score=27.10 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=26.8
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHHCCCEEEEE
Q 012212 7 VLVIP-YPAQGHVAPLMKLATKIAERAIKVTVV 38 (468)
Q Consensus 7 Il~~~-~~~~GH~~p~~~LA~~L~~rGH~Vt~~ 38 (468)
|++.. -++.|-..-...||..|+++|++|.++
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 44443 357799999999999999999999986
No 408
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=27.66 E-value=1.6e+02 Score=26.66 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=39.0
Q ss_pred ccChHHHhcCCCCCceeeccCch----hHHHhhhcCCceecc-ccc--cch-hhhHHHHHHHhhceeEeec
Q 012212 339 WAPQEKVLGHSSVACFISHCGWN----STMEGLSMGVPFLCW-PYF--SDQ-YQNRNYICEAWKIGLQFFA 401 (468)
Q Consensus 339 ~~p~~~ll~~~~~~~~I~hGG~~----s~~eal~~GvP~v~~-P~~--~DQ-~~na~rv~~~lG~g~~l~~ 401 (468)
+-...+++..++++++|----.. .+.+++.+|+++++= |+. .++ ..-...+++. |+-+.+..
T Consensus 53 ~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~-g~~~~v~~ 122 (344)
T 3ezy_A 53 YKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA-DVILFTGF 122 (344)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH-TCCEEEEC
T ss_pred eCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh-CCcEEEee
Confidence 44668888877888788655444 477899999998853 542 233 2333444554 77666654
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=27.65 E-value=4.3e+02 Score=30.11 Aligned_cols=104 Identities=7% Similarity=0.040 Sum_probs=0.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHH
Q 012212 7 VLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGE 86 (468)
Q Consensus 7 Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (468)
+++...|+.|-..-++.+|...+.+|..|.|++.....+.+. .+.......++.+. ........+.
T Consensus 386 ilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~---a~~lGvd~~~L~i~-----------~~~~~e~~l~ 451 (1706)
T 3cmw_A 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS-----------QPDTGEQALE 451 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEE-----------CCSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH---HHHcCCCHHHeEEc-----------CCCCHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCCcccH----------------------------HHHHHHhCCceEEE
Q 012212 87 SVARAMRGCLRDLIEKINQSNDCEPIRCVIADVTVGSA----------------------------LEVAESMGIARAAV 138 (468)
Q Consensus 87 ~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~----------------------------~~~A~~lgiP~v~~ 138 (468)
.+ +.+++. .++|+||+|....-. ..+|+.+|+|++++
T Consensus 452 ~l--------~~lv~~-------~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~i 516 (1706)
T 3cmw_A 452 IC--------DALARS-------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 516 (1706)
T ss_dssp HH--------HHHHHH-------TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HH--------HHHHHh-------cCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred c
Q 012212 139 V 139 (468)
Q Consensus 139 ~ 139 (468)
.
T Consensus 517 n 517 (1706)
T 3cmw_A 517 N 517 (1706)
T ss_dssp E
T ss_pred e
No 410
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=27.61 E-value=48 Score=30.39 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHC-CCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAER-AIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~r-GH~Vt~~~~~~ 42 (468)
+|++|++.- +.|.+- ..|++.|.++ ||+|+.++-..
T Consensus 23 ~~~~vlVtG--atG~iG--~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 23 KAKKVLILG--VNGFIG--HHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp CCCEEEEES--CSSHHH--HHHHHHHHHHSSCEEEEEESCC
T ss_pred CCCEEEEEC--CCChHH--HHHHHHHHhCCCCEEEEEeCCh
Confidence 457887764 344443 4788999998 99999998654
No 411
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=27.61 E-value=66 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++||++...----..-+-++...++++|++|++++-..
T Consensus 7 ~~rvLvv~aHPDDe~lg~GGtia~~~~~G~~V~vv~~T~ 45 (273)
T 3dff_A 7 ATRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFA 45 (273)
T ss_dssp -CEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEETTC
T ss_pred CCCEEEEEeCCChHHHhHHHHHHHHHHCCCcEEEEEEeC
Confidence 478887765555555667777777888999999988543
No 412
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=27.57 E-value=79 Score=24.56 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=34.3
Q ss_pred CEEEEE-cCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVLVI-PYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il~~-~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.|++++ ..+..-.+++...+|...+..|++|+++-+......+.+
T Consensus 8 ~kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l~k 53 (144)
T 2qs7_A 8 KKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITK 53 (144)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTBH
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHHhc
Confidence 366644 444557788899999999999999999999776655544
No 413
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=27.57 E-value=86 Score=26.42 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
..++++++.+.+. ...+.-+||+|.-...+...|+..|||+..+.+
T Consensus 17 snl~all~~~~~~-~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~ 62 (215)
T 3tqr_A 17 TNLQAIIGAIQKG-LAIEIRAVISNRADAYGLKRAQQADIPTHIIPH 62 (215)
T ss_dssp HHHHHHHHHHHTT-CSEEEEEEEESCTTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHHHHcC-CCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 3456666665542 123578899986555667789999999987653
No 414
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=27.56 E-value=52 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+++|++.- +.|.+- ..|+++|.++||+|+.++-..
T Consensus 10 ~~~IlVtG--atG~iG--~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAG--ATGFIG--QFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEEC--TTSHHH--HHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEEC--CCcHHH--HHHHHHHHHCCCCEEEEECCC
Confidence 35677763 445433 468899999999999998865
No 415
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=27.51 E-value=1.2e+02 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+||+++..++. ...-+....+.|.+.|++|++++...
T Consensus 3 ~kV~ill~~g~-~~~e~~~~~~~l~~ag~~v~~vs~~~ 39 (205)
T 2ab0_A 3 ASALVCLAPGS-EETEAVTTIDLLVRGGIKVTTASVAS 39 (205)
T ss_dssp CEEEEEECTTC-CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred cEEEEEEcCCC-cHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48888877665 34556667788999999999999754
No 416
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.37 E-value=23 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|||+++- .|.+ -..+|+.|.++||+|+++....
T Consensus 1 M~iiIiG---~G~~--G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIG---GETT--AYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEEC---CHHH--HHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEEC---CCHH--HHHHHHHHHhCCCeEEEEECCH
Confidence 4677663 3433 4578999999999999998654
No 417
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=27.35 E-value=31 Score=28.30 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=20.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHH---CCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAE---RAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~---rGH~Vt~~~~ 40 (468)
|+.+|||+++......+ .-...||+.+++ .|++|.++--
T Consensus 3 m~~~Mkilii~gS~r~~-g~t~~la~~i~~~l~~g~~v~~~dl 44 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSG-SYNSAALQEAIGLVPPGMSIELADI 44 (193)
T ss_dssp ----CEEEEEESCCSTT-CHHHHHHHHHHTTCCTTCEEEECCC
T ss_pred CCCCceEEEEECCCCCC-ChHHHHHHHHHHhccCCCeEEEEeH
Confidence 45678998776554311 234456666553 4788877653
No 418
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=27.32 E-value=3.3e+02 Score=24.92 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=41.1
Q ss_pred hhhhcccCccEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHH
Q 012212 266 SWLDEQAIRSVVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKV 345 (468)
Q Consensus 266 ~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l 345 (468)
+...+++++.|||++.|-.+. .+.....+.+|..+--.+|-+..... -.|+ ....|
T Consensus 132 ~iA~~nP~k~VVFfaiGFETT-aP~tA~~i~~a~~~~l~Nfsvl~~h~-------l~pP----------------a~~al 187 (372)
T 2z1d_A 132 RIAKENPDKTVVHFSPGFETT-TAPAAGMLNVAAQEELENFKIYSVHR-------LTPP----------------AVEVL 187 (372)
T ss_dssp HHHHHCTTSEEEEEEEECHHH-HHHHHHHHHHHHHHTCSSEEEEEEEE-------CHHH----------------HHHHH
T ss_pred HHHHHCCCCeEEEEeeChhhc-cHHHHHHHHHHHHcCCCCEEEEEecc-------ccHH----------------HHHHH
Confidence 444566678899999996543 23333444445443222333222211 1111 23667
Q ss_pred hcCC-CCCceeeccCchhHH
Q 012212 346 LGHS-SVACFISHCGWNSTM 364 (468)
Q Consensus 346 l~~~-~~~~~I~hGG~~s~~ 364 (468)
|..+ ++++||.-|--.++.
T Consensus 188 l~~~~~idgfi~PGHVstIi 207 (372)
T 2z1d_A 188 LKQGTVFQGLIAPGHVSTII 207 (372)
T ss_dssp HHTSCCCSEEEEEHHHHHHH
T ss_pred HcCCCcCcEEEecCeeeEEe
Confidence 7766 789999987665554
No 419
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=27.25 E-value=2.4e+02 Score=22.54 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=81.4
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCcee
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFI 355 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 355 (468)
.|-|-+||.. +-...++....++..+..+-+.+... +..|+.+. +|+.. +....++++|
T Consensus 7 ~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa------HRtp~~l~----------~~~~~---~~~~g~~ViI 65 (166)
T 3oow_A 7 QVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVSA------HRTPDKMF----------DYAET---AKERGLKVII 65 (166)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT------TTCHHHHH----------HHHHH---TTTTTCCEEE
T ss_pred eEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcC------cCCHHHHH----------HHHHH---HHhCCCcEEE
Confidence 4666677764 56678888888998888766655533 44555442 11111 1112245588
Q ss_pred eccCc----hhHHHhhhcCCceeccccccc---hhhhHHHHHHHh--hceeEe-eccCCCccCHHHHHHHHHHHhcChHH
Q 012212 356 SHCGW----NSTMEGLSMGVPFLCWPYFSD---QYQNRNYICEAW--KIGLQF-FADENGIITRQEIQRKVLTLLKNDDI 425 (468)
Q Consensus 356 ~hGG~----~s~~eal~~GvP~v~~P~~~D---Q~~na~rv~~~l--G~g~~l-~~~~~~~~t~~~l~~ai~~~l~~~~~ 425 (468)
.=+|. .++..++ .-+|+|.+|...- -.+--.-+.. + |+++.. ..++.+-+++-.++..|. -+.|+++
T Consensus 66 a~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vq-mp~gvpVatV~I~~ag~~nAa~lAa~Il-~~~d~~l 142 (166)
T 3oow_A 66 AGAGGAAHLPGMVAAK-TTLPVLGVPVKSSTLNGQDSLLSIVQ-MPAGIPVATFAIGMAGAKNAALFAASIL-QHTDINI 142 (166)
T ss_dssp EEECSSCCHHHHHHHT-CSSCEEEEECCCTTTTTHHHHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHHH-GGGCHHH
T ss_pred EECCcchhhHHHHHhc-cCCCEEEeecCcCCCCCHHHHHHHhc-CCCCCceEEEecCCccchHHHHHHHHHH-cCCCHHH
Confidence 77664 3444443 3689999997432 1111111222 2 433322 222101245555665553 4468999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 012212 426 RSNSLKLKEVARKSLLGG 443 (468)
Q Consensus 426 r~~a~~l~~~~~~~~~~~ 443 (468)
+++.+..++.+++.+.+.
T Consensus 143 ~~kl~~~r~~~~~~v~~~ 160 (166)
T 3oow_A 143 AKALAEFRAEQTRFVLEN 160 (166)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988765444
No 420
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.21 E-value=1e+02 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCceEEEecCCcc--cHHHHHHHh-------CCceEEEccc
Q 012212 110 EPIRCVIADVTVG--SALEVAESM-------GIARAAVVPF 141 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 141 (468)
.+||+||.|...+ .+..+.+.+ .+|.++++..
T Consensus 46 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 46 TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 3599999997654 345444433 5788887654
No 421
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=27.19 E-value=39 Score=30.61 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCC-EEEEEECCc
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAI-KVTVVNTQF 42 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH-~Vt~~~~~~ 42 (468)
|++++||.++-. |++--. +|..|+.+|| +|+++-...
T Consensus 1 m~~~~kI~VIGa---G~vG~~--ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 1 MAPKAKIVLVGS---GMIGGV--MATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp -CCCCEEEEECC---SHHHHH--HHHHHHHTTCCEEEEECSSS
T ss_pred CCCCCEEEEECC---CHHHHH--HHHHHHhCCCCeEEEEeCCH
Confidence 778889999843 555443 8999999999 977776543
No 422
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=27.14 E-value=76 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.2
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQ 303 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (468)
.+|+++||....+.+.++..++.+.+.+
T Consensus 6 ~v~i~LGSNlGd~~~~l~~A~~~L~~~~ 33 (161)
T 3qbc_A 6 QAYLGLGSNIGDRESQLNDAIKILNEYD 33 (161)
T ss_dssp EEEEEEEECSSSHHHHHHHHHHHHHHST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 5999999987667788888888888754
No 423
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=26.82 E-value=2.3e+02 Score=22.24 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.3
Q ss_pred ceEEEecCCcc-----cHHHHHHHhCCceEEEcc
Q 012212 112 IRCVIADVTVG-----SALEVAESMGIARAAVVP 140 (468)
Q Consensus 112 pDlvi~D~~~~-----~~~~~A~~lgiP~v~~~~ 140 (468)
.|+||++.-.+ +=...|..+|+|++.+..
T Consensus 69 aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 69 ADVVVAEVTQPSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp CSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 79999875433 222578899999999765
No 424
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=26.78 E-value=40 Score=29.20 Aligned_cols=34 Identities=3% Similarity=0.068 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+||||.|+-.+..| ..+|+.|.+.||+|+++...
T Consensus 2 ~~m~i~iiG~G~mG-----~~~a~~l~~~g~~v~~~~~~ 35 (259)
T 2ahr_A 2 NAMKIGIIGVGKMA-----SAIIKGLKQTPHELIISGSS 35 (259)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHTTSSCEEEEECSS
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhCCCeEEEECCC
Confidence 46799998655444 36788999999999877653
No 425
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=26.58 E-value=76 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCccChHH--HHHHHHHHHHCC-CEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAP--LMKLATKIAERA-IKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p--~~~LA~~L~~rG-H~Vt~~~~~ 41 (468)
++.|||++. +..+|-.+ ...|++.|.+.| .+|++...+
T Consensus 3 ~~~kvLiv~-G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLIT-GQNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEE-SCCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEc-CCCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 578999994 44488644 367888888899 999999874
No 426
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=26.46 E-value=61 Score=27.10 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCc----cChHHH-HHHHHHHHHC--CCEEEEEEC
Q 012212 4 QPHVLVIPYPAQ----GHVAPL-MKLATKIAER--AIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~----GH~~p~-~~LA~~L~~r--GH~Vt~~~~ 40 (468)
|||||++...-. |....+ ..+++.|.++ ||+|+++--
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 679987654433 333332 2345555555 899887754
No 427
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=26.39 E-value=80 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQK 304 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (468)
.+|+++||....+.+.++..++.+.+.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (160)
T 1cbk_A 3 TAYIALGSNLNTPVEQLHAALKAISQLSN 31 (160)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhhCCC
Confidence 48999999876678888888898887643
No 428
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=26.38 E-value=51 Score=29.12 Aligned_cols=35 Identities=6% Similarity=0.120 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|++|+++ ++.|.+- ..|+++|.++||+|+.++-..
T Consensus 2 ~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILIL--GPTGAIG--RHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEE--CCCchHH--HHHHHHHHhCCCcEEEEECCC
Confidence 4567766 3445443 367899999999999988754
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=26.22 E-value=2.8e+02 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=31.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+-|+|.-.++.|-..-...|++.|..+|+.|.....|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 45667777888999999999999999999997666554
No 430
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=26.20 E-value=37 Score=31.25 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.+.+|+++-.+..| +.+|..|+++|++|+++-...
T Consensus 4 ~~~dVvIIGgGi~G-----l~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 4 EKSEIVVIGGGIVG-----VTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp SBCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSSS
T ss_pred CcCCEEEECCCHHH-----HHHHHHHHHCCCeEEEEeCCC
Confidence 45778888555434 678899999999999998653
No 431
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=25.92 E-value=66 Score=25.88 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|+.|++.-.+|.|-..-...|++.|...|+.+.++.
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 357888888999999999999999998999998884
No 432
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=25.89 E-value=2.6e+02 Score=22.59 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=57.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHC--CCEEEEEECCcchHHHHH-hhhhhccCCCCCeEEEEcCCCCCCCcCCCCCH
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAER--AIKVTVVNTQFIHKKIIA-SLQEKAEDSSSQIKLVTIPDGLELQAADREDP 81 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~r--GH~Vt~~~~~~~~~~i~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (468)
++|+++. ...+-.-++.+|+.|.+. ||++. .+......+.+ .| +....+..+ ...
T Consensus 28 g~V~lsv--~D~dK~~lv~~ak~~~~lL~Gf~L~--AT~gTa~~L~e~~G----------l~v~~v~k~-------~eG- 85 (178)
T 1vmd_A 28 KRIALIA--HDRRKRDLLEWVSFNLGTLSKHELY--ATGTTGALLQEKLG----------LKVHRLKSG-------PLG- 85 (178)
T ss_dssp CEEEEEE--CGGGHHHHHHHHHHSHHHHTTSEEE--ECHHHHHHHHHHHC----------CCCEECSCG-------GGT-
T ss_pred CEEEEEE--ehhhHHHHHHHHHHHHHHhcCCEEE--EchHHHHHHHHHhC----------ceeEEEeec-------CCC-
Confidence 4555553 456677899999999999 99654 55555666665 44 333333211 000
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCCCCCceEEEecCC--cc--------cHHHHHHHhCCceEE
Q 012212 82 LKLGESVARAMRGCLRDLIEKINQSNDCEPIRCVIADVT--VG--------SALEVAESMGIARAA 137 (468)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pDlvi~D~~--~~--------~~~~~A~~lgiP~v~ 137 (468)
..+++-++++. .+.|+||.-.- .. ....+|-..+||+++
T Consensus 86 ----------G~pqI~d~I~~-------geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 86 ----------GDQQIGAMIAE-------GKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAI 134 (178)
T ss_dssp ----------HHHHHHHHHHT-------TSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEES
T ss_pred ----------CCchHHHHHHC-------CCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEe
Confidence 12334444433 57999998543 22 245789999999875
No 433
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=25.84 E-value=1.5e+02 Score=23.95 Aligned_cols=37 Identities=27% Similarity=0.234 Sum_probs=27.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+||+++-.++.. ..-+....+.|.+.|++|++++...
T Consensus 6 kkv~ill~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~ 42 (190)
T 4e08_A 6 KSALVILAPGAE-EMEFIIAADVLRRAGIKVTVAGLNG 42 (190)
T ss_dssp CEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cEEEEEECCCch-HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 478877666553 4445566788889999999999864
No 434
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=25.79 E-value=1.4e+02 Score=25.23 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=28.6
Q ss_pred CCCEEEEEcC-----CCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPY-----PAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~-----~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.|+||+++.. ++. ...=+......|.+.|++|++++...
T Consensus 5 ~m~kv~ill~~~~~~~g~-~~~E~~~p~~~l~~ag~~v~~~s~~g 48 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGS-EIHEAVLTLLAISRSGAQAVCFAPDK 48 (232)
T ss_dssp -CCEEEEECCSBSTTTSB-CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred cCCeEEEEEccCCCCCCe-eHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4678998876 433 44456666788889999999999754
No 435
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=25.68 E-value=66 Score=26.59 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCc----cChHHHHH-HHHHHHHCC--CEEEEEEC
Q 012212 4 QPHVLVIPYPAQ----GHVAPLMK-LATKIAERA--IKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~----GH~~p~~~-LA~~L~~rG--H~Vt~~~~ 40 (468)
|||||++...-. |+..-+.. +++.|.++| |+|.++--
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 467876544433 66555443 567777777 99988864
No 436
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=25.67 E-value=3.1e+02 Score=24.35 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=36.8
Q ss_pred cChHHHhcCCCCCceeeccCc----hhHHHhhhcCCceecc-cccc--chh-hhHHHHHHHhhceeEee
Q 012212 340 APQEKVLGHSSVACFISHCGW----NSTMEGLSMGVPFLCW-PYFS--DQY-QNRNYICEAWKIGLQFF 400 (468)
Q Consensus 340 ~p~~~ll~~~~~~~~I~hGG~----~s~~eal~~GvP~v~~-P~~~--DQ~-~na~rv~~~lG~g~~l~ 400 (468)
-...+++..+++++++---.. ..+.+++.+|+++++- |... ++- .-...++++ |+-+.+.
T Consensus 52 ~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~-g~~~~~~ 119 (332)
T 2glx_A 52 TSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREA-GVVLGTN 119 (332)
T ss_dssp SCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH-TCCEEEC
T ss_pred CCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 356778877667777765544 3466789999999874 6532 332 223334454 6665554
No 437
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=25.54 E-value=2.1e+02 Score=31.06 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcch
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIH 44 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~ 44 (468)
|+++.|||+.. .|. -...+++++.+.|++|+.+.+....
T Consensus 1 M~~~kkVLIag---rGe--ia~riiraa~elGi~vVav~s~~d~ 39 (1150)
T 3hbl_A 1 MKQIKKLLVAN---RGE--IAIRIFRAAAELDISTVAIYSNEDK 39 (1150)
T ss_dssp --CCCEEEECC---CHH--HHHHHHHHHHHTTCEEEEEECGGGT
T ss_pred CCCCCEEEEEC---CCH--HHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 66677888853 343 3468999999999999998765543
No 438
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=25.51 E-value=83 Score=27.55 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++||++...----..-+-++...++++|++|++++-..
T Consensus 7 ~~rvLvv~aHPDDe~l~~GGtia~~~~~G~~V~vv~~T~ 45 (270)
T 3dfi_A 7 RTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFA 45 (270)
T ss_dssp CSEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeCCchHHHhhHHHHHHHHhCCCeEEEEEEeC
Confidence 468887765555555667777777889999999987543
No 439
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=25.35 E-value=96 Score=27.30 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=26.8
Q ss_pred CEEEEEcCCCc-cChH---HHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQ-GHVA---PLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~-GH~~---p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+||+++..+.. -|-. ....++++|.++||+|.++...
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 68988864432 2222 3457999999999999998875
No 440
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.31 E-value=71 Score=27.29 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCc--cChHHHHH-HHHHHHHC-CCEEEEEEC
Q 012212 4 QPHVLVIPYPAQ--GHVAPLMK-LATKIAER-AIKVTVVNT 40 (468)
Q Consensus 4 ~~~Il~~~~~~~--GH~~p~~~-LA~~L~~r-GH~Vt~~~~ 40 (468)
||||+++..... |+..-+.. +++.|.++ |++|.++..
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 358887655443 66665544 46667677 999988754
No 441
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=25.30 E-value=74 Score=22.81 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=36.4
Q ss_pred CCccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcccC
Q 012212 404 NGIITRQEIQRKVLTLLKND-DIRSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLISGC 464 (468)
Q Consensus 404 ~~~~t~~~l~~ai~~~l~~~-~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 464 (468)
+|.++.++|+..++..+.+. .-...-..+.+.++.. ...|+..-..++|+..+......|
T Consensus 28 ~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~-D~d~DG~Idf~EF~~~m~~~~~~~ 88 (100)
T 3nxa_A 28 KNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNL-DANHDGRISFDEYWTLIGGITGPI 88 (100)
T ss_dssp TTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHS-CCCSSCCBCHHHHHHHHHHHHGGG
T ss_pred CCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHh-CCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57899999999998865321 1111223455666653 334455566777777776655444
No 442
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=25.28 E-value=1.1e+02 Score=27.25 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCcc-C---hHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQG-H---VAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~G-H---~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++||+++..+-.+ | +.-...++++|.++||+|+.+....
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4688888754322 2 3467899999999999999998543
No 443
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.17 E-value=3.4e+02 Score=23.77 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCEEEEEECCcchHHHHHhhhhhccCCCCCeEEEEcCCCCCCCcCCCCCHHHHHHHHHHHhhHHHHHHHHHHhhCCCCCC
Q 012212 32 AIKVTVVNTQFIHKKIIASLQEKAEDSSSQIKLVTIPDGLELQAADREDPLKLGESVARAMRGCLRDLIEKINQSNDCEP 111 (468)
Q Consensus 32 GH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 111 (468)
..+..+++.+.+.-....+| ++...+....+.. +-....+.++++.+++ .+
T Consensus 178 ~~~~~v~~H~af~Yf~~~yG----------l~~~~~~~~~~~~---------------eps~~~l~~l~~~ik~----~~ 228 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAKRFG----------LKQLGISGISPEQ---------------EPSPRQLKEIQDFVKE----YN 228 (286)
T ss_dssp SCCEEEEEESCCHHHHHHTT----------CEEEEEECSCC------------------CCHHHHHHHHHHHHH----TT
T ss_pred CCCEEEEECCchHHHHHHCC----------CeEeeccccCCCC---------------CCCHHHHHHHHHHHHH----cC
Confidence 45556677778888888865 5544433211111 1122345556666665 45
Q ss_pred ceEEEecCCcc--cHHHHHHHhCCceEEEcc
Q 012212 112 IRCVIADVTVG--SALEVAESMGIARAAVVP 140 (468)
Q Consensus 112 pDlvi~D~~~~--~~~~~A~~lgiP~v~~~~ 140 (468)
..+|+++.... .+-.+|+..|++++.+.+
T Consensus 229 v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 229 VKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp CCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred CCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 89999998766 555789999999887654
No 444
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=25.14 E-value=34 Score=26.35 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.9
Q ss_pred cChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 16 GHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 16 GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
||.+....|-+.|.++|.+..+++.+.+...+..
T Consensus 1 ~~m~Rl~~l~~~m~~~glDa~li~~~~ni~YlTG 34 (140)
T 3i7m_A 1 GHMTKLEQIQQWTAQHHASMTYLSNPKTIEYLTG 34 (140)
T ss_dssp ---CHHHHHHHHHHHTTCSEEEECCHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHcCCCEEEECCCCcceeecC
Confidence 6888899999999999999999999877666644
No 445
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=25.13 E-value=78 Score=25.93 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
||+.+.|++.-.+|.|=..-...|++.|...| +|.....
T Consensus 1 mm~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~ 39 (213)
T 2plr_A 1 MKKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEW 39 (213)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEET
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecC
Confidence 66666788888899999999999999998778 6655433
No 446
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.10 E-value=84 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCc--cChHHHHH-HHHHHHHCCCEEEEEEC
Q 012212 3 RQPHVLVIPYPAQ--GHVAPLMK-LATKIAERAIKVTVVNT 40 (468)
Q Consensus 3 ~~~~Il~~~~~~~--GH~~p~~~-LA~~L~~rGH~Vt~~~~ 40 (468)
.++||+++..... |...-+.. +++.+.+.|++|.++--
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 4689987765543 55545444 56677778999988764
No 447
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.09 E-value=1.1e+02 Score=25.65 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 95 CLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 95 ~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
.++.+++.+++.....+.-+||++.-...+...|+..|||+..+.+
T Consensus 13 ~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~ 58 (209)
T 1meo_A 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINH 58 (209)
T ss_dssp THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECc
Confidence 3556666655432113456788998666777889999999987654
No 448
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=25.01 E-value=73 Score=29.32 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|++|++.- +.|-+ -..|++.|.++||+|+.+.-..
T Consensus 28 ~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 63 (379)
T 2c5a_A 28 ENLKISITG--AGGFI--ASHIARRLKHEGHYVIASDWKK 63 (379)
T ss_dssp SCCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCeEEEEC--CccHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 356777763 33333 2468899999999999987653
No 449
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=24.99 E-value=74 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|||.++-.+..|. .+|+.|.++||+|+++...
T Consensus 6 m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~~~ 37 (299)
T 1vpd_A 6 MKVGFIGLGIMGK-----PMSKNLLKAGYSLVVSDRN 37 (299)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHHTTCEEEEECSC
T ss_pred ceEEEECchHHHH-----HHHHHHHhCCCEEEEEeCC
Confidence 6899996655553 4688899999999877553
No 450
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.98 E-value=1.6e+02 Score=21.36 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=28.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIRQD 313 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~ 313 (468)
.||+.|.| +++.++.++..+.+.|.++++.++..
T Consensus 3 qifvvfss----dpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 3 QIFVVFSS----DPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp EEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eEEEEecC----CHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 47777655 88999999999999999999988755
No 451
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=24.93 E-value=82 Score=26.94 Aligned_cols=36 Identities=0% Similarity=-0.058 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
|.|.++++..+.| --..||+.|+++|++|.++.-..
T Consensus 21 m~k~vlITGas~g---IG~~la~~l~~~G~~V~~~~r~~ 56 (251)
T 3orf_A 21 MSKNILVLGGSGA---LGAEVVKFFKSKSWNTISIDFRE 56 (251)
T ss_dssp -CCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCCc
Confidence 4456666644432 23588999999999999887643
No 452
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.89 E-value=2.9e+02 Score=32.07 Aligned_cols=45 Identities=7% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKII 48 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~ 48 (468)
.-.++++..++.|...-...++.+-+++|+.|.|++.....+.+.
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~ 1125 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1125 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH
Confidence 356889999999999999999999999999999999998766655
No 453
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=24.83 E-value=4e+02 Score=24.33 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCCCceEEEecCCcc---cHHHHHHHhCCceEEEcccc
Q 012212 96 LRDLIEKINQSNDCEPIRCVIADVTVG---SALEVAESMGIARAAVVPFG 142 (468)
Q Consensus 96 ~~~ll~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~lgiP~v~~~~~~ 142 (468)
+.+.++.+++ .++|+||.=.-.. .+-.+|...++|+|.+-+..
T Consensus 77 v~~~~~~~~~----~~~D~IIavGGGs~iD~aK~iA~~~~~P~i~IPTTa 122 (364)
T 3iv7_A 77 AERARAVATD----NEIDLLVCVGGGSTIGLAKAIAMTTALPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHH----TTCCEEEEEESHHHHHHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHh----cCCCEEEEeCCcHHHHHHHHHHhccCCCEEEEcCCc
Confidence 3344444444 4589998754433 44567778899999988766
No 454
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=24.81 E-value=70 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++++||+.- +.|-+ -..|++.|.++||+|+.+...
T Consensus 11 ~~~~vlVTG--atG~i--G~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 11 GSMRALITG--VAGFV--GKYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp --CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CcceEEEEC--CCChH--HHHHHHHHHHCCCEEEEEecC
Confidence 356776663 33433 247899999999999998754
No 455
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=24.76 E-value=19 Score=29.89 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=18.7
Q ss_pred CCCCCEEEEEcCCCc-cChHHHHHHHHHHHH---CCCEEE
Q 012212 1 MSRQPHVLVIPYPAQ-GHVAPLMKLATKIAE---RAIKVT 36 (468)
Q Consensus 1 m~~~~~Il~~~~~~~-GH~~p~~~LA~~L~~---rGH~Vt 36 (468)
|+++|||+++...-. +-. ...|++++.+ .|++|.
T Consensus 1 m~~~mkil~I~GS~r~~s~--t~~l~~~~~~~~~~g~~v~ 38 (193)
T 3svl_A 1 MAEKLQVVTLLGSLRKGSF--NGMVARTLPKIAPASMEVN 38 (193)
T ss_dssp ---CEEEEEEECCCSTTCH--HHHHHHHGGGTSCTTEEEE
T ss_pred CCCCCEEEEEEccCCCCCH--HHHHHHHHHHHccCCCEEE
Confidence 778899997765544 333 3366666654 366666
No 456
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.71 E-value=71 Score=23.15 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=31.9
Q ss_pred cCCceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC
Q 012212 369 MGVPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN 422 (468)
Q Consensus 369 ~GvP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~ 422 (468)
..+|+|++ ..+......+..+. |+--.+.+- ++.++|.+.|+++++.
T Consensus 79 ~~~~ii~~--~~~~~~~~~~~~~~-g~~~~l~kp----~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII--GNPDGFAQHRKLKA-HADEYVAKP----VDADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE--ECGGGHHHHHHSTT-CCSEEEESS----CCHHHHHHHHHHHHCC
T ss_pred cCCCEEEE--ecCCchhHHHHHHh-CcchheeCC----CCHHHHHHHHHHHHcC
Confidence 57898888 34444455555553 765455442 7899999999998864
No 457
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=24.70 E-value=71 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+|||+|+-.+..+ ....++|.++||+|..+.+.+
T Consensus 2 ~mrivf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~p 35 (314)
T 3tqq_A 2 SLKIVFAGTPQFA-----VPTLRALIDSSHRVLAVYTQP 35 (314)
T ss_dssp CCEEEEEECSGGG-----HHHHHHHHHSSSEEEEEECCC
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4799999777554 355688889999998777743
No 458
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=24.68 E-value=97 Score=26.93 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
-|+++++..+.| --.++|+.|+++|++|.+..-.
T Consensus 11 GK~alVTGas~G---IG~aia~~la~~Ga~V~~~~r~ 44 (261)
T 4h15_A 11 GKRALITAGTKG---AGAATVSLFLELGAQVLTTARA 44 (261)
T ss_dssp TCEEEESCCSSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeccCcH---HHHHHHHHHHHcCCEEEEEECC
Confidence 478888877664 2367899999999999887653
No 459
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=24.65 E-value=67 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCCcc-C---hHHHHHHHHHH-HHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQG-H---VAPLMKLATKI-AERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~G-H---~~p~~~LA~~L-~~rGH~Vt~~~~~ 41 (468)
|+ ++||+++..+-.+ | +.-...++++| .++||+|+.+...
T Consensus 1 m~-k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 1 MT-KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp ---CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CC-CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 54 4789888654333 3 23468899999 9999999998754
No 460
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=24.59 E-value=82 Score=28.18 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
.++|++.- +.|.+- ..|++.|.++||+|+.+.-..
T Consensus 11 ~~~vlVTG--atG~iG--~~l~~~L~~~g~~V~~~~r~~ 45 (342)
T 1y1p_A 11 GSLVLVTG--ANGFVA--SHVVEQLLEHGYKVRGTARSA 45 (342)
T ss_dssp TCEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEC--CccHHH--HHHHHHHHHCCCEEEEEeCCc
Confidence 45776663 334332 468899999999999887643
No 461
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.45 E-value=1.9e+02 Score=23.41 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 012212 426 RSNSLKLKEVARKSLLGGGSSFRNFESFISDIKMLI 461 (468)
Q Consensus 426 r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 461 (468)
|+......+++++.+....-..+.|+++++++.++.
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 333444444444443333344566666666665443
No 462
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=24.40 E-value=98 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|+++++|+++..+ .--..+++++.+.|++|.++.
T Consensus 21 mm~~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 21 MWNSRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp CCSCCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE
Confidence 5666799998644 244567888888999999988
No 463
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=24.34 E-value=75 Score=28.55 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++++|++.- +.|-+ -..|++.|.++||+|+.+.-.
T Consensus 20 ~~~~vlVTG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 20 HMKKVFITG--ICGQI--GSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp -CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEeC--CccHH--HHHHHHHHHHCCCEEEEEECC
Confidence 356777663 33322 247889999999999998764
No 464
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=24.31 E-value=79 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+|+++++.++.| --..+|+.|+++|++|.+....
T Consensus 2 ~k~vlITGas~g---IG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASRG---IGEAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 345555544332 2358899999999999888764
No 465
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=24.30 E-value=99 Score=23.46 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCccChH--------HHHHHHHHHHHCCCEEE
Q 012212 4 QPHVLVIPYPAQGHVA--------PLMKLATKIAERAIKVT 36 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~--------p~~~LA~~L~~rGH~Vt 36 (468)
+||.++++.|-.|... .+-..|..|.++||-+.
T Consensus 7 ~M~~IYIagPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~ 47 (125)
T 1t1j_A 7 HMRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVF 47 (125)
T ss_dssp CCCEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhheeEECCCCCCcchHHHHHHHHHHHHHHHHHHCCCeee
Confidence 4566677777666632 34456677889999654
No 466
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=24.25 E-value=89 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHH-HHHHHHHHHCCCEEEEEE
Q 012212 5 PHVLVIPYPAQGHVAPL-MKLATKIAERAIKVTVVN 39 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~-~~LA~~L~~rGH~Vt~~~ 39 (468)
+||+++=....|+..-+ ..||+.|.+.|++|.++.
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 45665555566888764 467888989999998764
No 467
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.23 E-value=74 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCEEEEEcCCC--ccChHHHHH-HHHH-HHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPA--QGHVAPLMK-LATK-IAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~--~GH~~p~~~-LA~~-L~~rGH~Vt~~~~~ 41 (468)
||||+++.... .|+..-+.. +++. |.++|++|.++.-.
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 46888665443 466665555 4566 77889999888653
No 468
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.22 E-value=1e+02 Score=17.13 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhc-ChHHHHHHHHHHHHH
Q 012212 410 QEIQRKVLTLLK-NDDIRSNSLKLKEVA 436 (468)
Q Consensus 410 ~~l~~ai~~~l~-~~~~r~~a~~l~~~~ 436 (468)
.++.+.+.++|. +.+......+|++.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 477888888884 445777777777665
No 469
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=24.18 E-value=76 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 6 HVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 6 ~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+++++.++.| --.++|+.|+++|++|+++...
T Consensus 3 k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~r~ 35 (247)
T 3dii_A 3 RGVIVTGGGHG---IGKQICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 45555544432 2357899999999999987654
No 470
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=24.18 E-value=1.6e+02 Score=25.77 Aligned_cols=85 Identities=6% Similarity=-0.087 Sum_probs=47.2
Q ss_pred CCCceeeccCchhHHHhh-----hc---CCceeccccccchhhhHH-----HHHHHhh-ceeEeeccCCCccCHHHHHHH
Q 012212 350 SVACFISHCGWNSTMEGL-----SM---GVPFLCWPYFSDQYQNRN-----YICEAWK-IGLQFFADENGIITRQEIQRK 415 (468)
Q Consensus 350 ~~~~~I~hGG~~s~~eal-----~~---GvP~v~~P~~~DQ~~na~-----rv~~~lG-~g~~l~~~~~~~~t~~~l~~a 415 (468)
.++++|.--|...+.+.+ .. |+|+-++ |.+..+. .+.+. + +-+.+........-+..|++.
T Consensus 106 ~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvv----d~pel~~f~~Pa~~~~g-~~l~IaIST~Gksp~lA~~ir~~ 180 (274)
T 1kyq_A 106 AWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVA----DKPDLCDFYFGANLEIG-DRLQILISTNGLSPRFGALVRDE 180 (274)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEET----TCGGGBSEECCEEEEET-TTEEEEEEESSSCHHHHHHHHHH
T ss_pred CeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEEC----CCcccCeeEeeeEEEeC-CCEEEEEECCCCCcHHHHHHHHH
Confidence 344588777765444433 33 6666334 4444443 33332 3 334443322112336778889
Q ss_pred HHHHh---cCh---HHHHHHHHHHHHHHHH
Q 012212 416 VLTLL---KND---DIRSNSLKLKEVARKS 439 (468)
Q Consensus 416 i~~~l---~~~---~~r~~a~~l~~~~~~~ 439 (468)
|++.| .++ .+-+.+.+++++++..
T Consensus 181 ie~~l~~~p~~~~~~~~~~l~~~R~~ik~~ 210 (274)
T 1kyq_A 181 IRNLFTQMGDLALEDAVVKLGELRRGIRLL 210 (274)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 98888 532 4667777888888775
No 471
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=24.14 E-value=1.1e+02 Score=25.03 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 2 SRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 2 ~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++.+.|++.-.+|.|=..-...|++.|...|+.|..+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~ 46 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 3456788888889999999999999999999999766543
No 472
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=24.09 E-value=94 Score=24.02 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHH
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKI 47 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i 47 (468)
..+|+++|.. |+-......+..|.+.|++|.++.++ ...+.
T Consensus 72 ~~~ivvyC~~--g~~~rs~~aa~~L~~~G~~v~~l~GG-~~~W~ 112 (144)
T 3nhv_A 72 EKVIITYCWG--PACNGATKAAAKFAQLGFRVKELIGG-IEYWR 112 (144)
T ss_dssp TSEEEEECSC--TTCCHHHHHHHHHHHTTCEEEEEESH-HHHHH
T ss_pred CCeEEEEECC--CCccHHHHHHHHHHHCCCeEEEeCCc-HHHHH
Confidence 4578888854 44334567789999999998777664 44443
No 473
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=24.02 E-value=79 Score=26.70 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCCEEEEEc-CCCc----cChHH-H-HHHHHHHHHCCCEEEEEEC
Q 012212 3 RQPHVLVIP-YPAQ----GHVAP-L-MKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 3 ~~~~Il~~~-~~~~----GH~~p-~-~~LA~~L~~rGH~Vt~~~~ 40 (468)
+|+|||++. .|-. +-++. + ..+++.|.+.||+|.+.-.
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 577888664 4432 22332 2 2355666678999998765
No 474
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=24.01 E-value=53 Score=29.85 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+.++|++.- +.|.+- ..|++.|.++||+|+.+.-..
T Consensus 8 ~~~~vlVtG--atG~iG--~~l~~~L~~~g~~V~~~~r~~ 43 (357)
T 1rkx_A 8 QGKRVFVTG--HTGFKG--GWLSLWLQTMGATVKGYSLTA 43 (357)
T ss_dssp TTCEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEC--CCchHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 346777663 444443 467899999999999987643
No 475
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.01 E-value=2.2e+02 Score=20.94 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|++++||+++- .+-.-...|.+.|.+.|++|..+...
T Consensus 3 ~~~~~~iLivd----d~~~~~~~l~~~l~~~g~~v~~~~~~ 39 (140)
T 3grc_A 3 LAPRPRILICE----DDPDIARLLNLMLEKGGFDSDMVHSA 39 (140)
T ss_dssp --CCSEEEEEC----SCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred CCCCCCEEEEc----CCHHHHHHHHHHHHHCCCeEEEECCH
Confidence 34678998873 56666778888899999998777654
No 476
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=24.01 E-value=2.7e+02 Score=22.12 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCcc------hHHHHHhhhhhccCCCCCeEEEEcCCCCCC-CcCCCCCHHHHHHHHHHHhh
Q 012212 21 LMKLATKIAERAIKVTVVNTQFI------HKKIIASLQEKAEDSSSQIKLVTIPDGLEL-QAADREDPLKLGESVARAMR 93 (468)
Q Consensus 21 ~~~LA~~L~~rGH~Vt~~~~~~~------~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (468)
...+.+.|.++|+.+.++|.... ...+...|.. ..++.+........ ......+. ..
T Consensus 39 ~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~------~~fd~i~~~~~~~~~~~~~KP~p-~~--------- 102 (189)
T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGII------DYFDFIYASNSELQPGKMEKPDK-TI--------- 102 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCG------GGEEEEEECCTTSSTTCCCTTSH-HH---------
T ss_pred HHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCch------hheEEEEEccccccccCCCCcCH-HH---------
Confidence 46788999999999999997653 2233333321 23444433332110 01011121 11
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
+..+++.+.- .+-++++++-....-..+|+..|+.++.+..
T Consensus 103 --~~~~~~~~~~----~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~ 143 (189)
T 3ib6_A 103 --FDFTLNALQI----DKTEAVMVGNTFESDIIGANRAGIHAIWLQN 143 (189)
T ss_dssp --HHHHHHHHTC----CGGGEEEEESBTTTTHHHHHHTTCEEEEECC
T ss_pred --HHHHHHHcCC----CcccEEEECCCcHHHHHHHHHCCCeEEEECC
Confidence 2233333321 1234555544434578899999999998764
No 477
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.00 E-value=30 Score=26.74 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=35.5
Q ss_pred cCCceeccccccchhhhHHHHHHHhh-ceeEeeccCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012212 369 MGVPFLCWPYFSDQYQNRNYICEAWK-IGLQFFADENGIITRQEIQRKVLTLLKNDDIRSNSLKLKEVA 436 (468)
Q Consensus 369 ~GvP~v~~P~~~DQ~~na~rv~~~lG-~g~~l~~~~~~~~t~~~l~~ai~~~l~~~~~r~~a~~l~~~~ 436 (468)
..+|+|++--..+ ........+. | +--.+.+- ++.++|.++|++++....+++..+++.+.+
T Consensus 78 ~~~~ii~ls~~~~-~~~~~~~~~~-g~~~~~l~kP----~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 140 (154)
T 2rjn_A 78 PDIERVVISGYAD-AQATIDAVNR-GKISRFLLKP----WEDEDVFKVVEKGLQLAFLREENLRLQEET 140 (154)
T ss_dssp TTSEEEEEECGGG-HHHHHHHHHT-TCCSEEEESS----CCHHHHHHHHHHHHHHHHHHHHTTSCCC--
T ss_pred CCCcEEEEecCCC-HHHHHHHHhc-cchheeeeCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678887754443 2333333342 5 53344432 789999999999997555554444433333
No 478
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=23.96 E-value=1.6e+02 Score=20.80 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCceEEEecCCcc--cHHHHHHHh-----CCceEEEccc
Q 012212 110 EPIRCVIADVTVG--SALEVAESM-----GIARAAVVPF 141 (468)
Q Consensus 110 ~~pDlvi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 141 (468)
.+||+||.|...+ .+..+.+.+ ++|.++++..
T Consensus 44 ~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 44 GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3599999997654 344444333 5788877653
No 479
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=23.95 E-value=83 Score=25.05 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=20.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHH-HCC--CEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIA-ERA--IKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~-~rG--H~Vt~~~~ 40 (468)
|.+++||||+|.+=..----.-+|.+.+. ++| .++.+.+-
T Consensus 1 m~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SA 43 (163)
T 1u2p_A 1 MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSA 43 (163)
T ss_dssp ---CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEE
T ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEec
Confidence 77788999999774432222334555554 344 23554443
No 480
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.85 E-value=95 Score=26.15 Aligned_cols=47 Identities=26% Similarity=0.353 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEcc
Q 012212 94 GCLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVVP 140 (468)
Q Consensus 94 ~~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (468)
..++++++.+.+..-..+.-+||+|.-...+...|+..|||+..+.+
T Consensus 20 snl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 20 SNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp HHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCB
T ss_pred HHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 34566666665422113467789986545577789999999987654
No 481
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=23.85 E-value=80 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 3 RQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++++|++.- +.|-+ -..|++.|.++||+|+.+.-..
T Consensus 26 ~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 61 (352)
T 1sb8_A 26 QPKVWLITG--VAGFI--GSNLLETLLKLDQKVVGLDNFA 61 (352)
T ss_dssp SCCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCeEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEeCCC
Confidence 356777663 33433 2478999999999999987643
No 482
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=23.75 E-value=55 Score=26.90 Aligned_cols=45 Identities=7% Similarity=0.166 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhcC-------hHHHHHHHHHHHHHHH
Q 012212 384 QNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLKN-------DDIRSNSLKLKEVARK 438 (468)
Q Consensus 384 ~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~~-------~~~r~~a~~l~~~~~~ 438 (468)
+.+.--++ -|+|+.+ |+++|.++|.+.+.. .+|+ +.-.+-..+|+
T Consensus 103 d~~~Fe~~-cGVGV~V--------T~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~ 154 (187)
T 3tl4_X 103 TKMGMNEN-SGVGIEI--------TEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKN 154 (187)
T ss_dssp CHHHHHHT-TTTTCCC--------CHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHT
T ss_pred CHHHHHHH-CCCCeEe--------CHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhc
Confidence 33333344 4888765 889999999999853 1255 55555555554
No 483
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=23.73 E-value=43 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|+||.|+-.+..|. .+|+.|.+ ||+|+++...
T Consensus 1 M~~i~iiG~G~~G~-----~~a~~l~~-g~~V~~~~~~ 32 (289)
T 2cvz_A 1 MEKVAFIGLGAMGY-----PMAGHLAR-RFPTLVWNRT 32 (289)
T ss_dssp -CCEEEECCSTTHH-----HHHHHHHT-TSCEEEECSS
T ss_pred CCeEEEEcccHHHH-----HHHHHHhC-CCeEEEEeCC
Confidence 35799996666654 56888989 9999887654
No 484
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.68 E-value=79 Score=22.09 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
.+|+++|..+ ......|..|.+.||+|..+..
T Consensus 54 ~~ivvyC~~g----~rs~~a~~~L~~~G~~v~~l~G 85 (94)
T 1wv9_A 54 RPLLLVCEKG----LLSQVAALYLEAEGYEAMSLEG 85 (94)
T ss_dssp SCEEEECSSS----HHHHHHHHHHHHHTCCEEEETT
T ss_pred CCEEEEcCCC----ChHHHHHHHHHHcCCcEEEEcc
Confidence 5688888554 2567788899999999554443
No 485
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=23.68 E-value=99 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEE
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVN 39 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~ 39 (468)
|++.|+|+++... .....+++.|.+.||+|.+..
T Consensus 2 ~~~~m~i~v~~~~-----~~~~~~~~~L~~~g~~v~~~~ 35 (293)
T 3d4o_A 2 MLTGKHVVIIGGD-----ARQLEIIRKLSTFDAKISLVG 35 (293)
T ss_dssp CCTTCEEEEECBC-----HHHHHHHHHHHHTTCEEEEES
T ss_pred CccCcEEEEECCC-----HHHHHHHHHHHhCCCEEEEec
Confidence 6677899888422 355667899999999998864
No 486
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=23.62 E-value=69 Score=26.86 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=42.6
Q ss_pred HhhhcCCceecccc----ccchhhhHHHHHHHhhceeEeecc--------CCCccCHHHHHHHHHHHhcChH
Q 012212 365 EGLSMGVPFLCWPY----FSDQYQNRNYICEAWKIGLQFFAD--------ENGIITRQEIQRKVLTLLKNDD 424 (468)
Q Consensus 365 eal~~GvP~v~~P~----~~DQ~~na~rv~~~lG~g~~l~~~--------~~~~~t~~~l~~ai~~~l~~~~ 424 (468)
.++..++|++++|- .+....|-.++.+ +|+=+..+.. +......++|.+.|.+.|.+..
T Consensus 116 ~~L~~~~plvlaPamn~~m~~h~~Nm~~L~~-~G~~ii~P~~~lacg~~g~g~mae~~~I~~~i~~~l~~~~ 186 (207)
T 3mcu_A 116 ATLRNGKPVVLAVSTNDALGLNGVNLMRLMA-TKNIYFVPFGQDAPEKKPNSMVARMELLEDTVLEALQGKQ 186 (207)
T ss_dssp HHHHTTCCEEEEEEETTTTTTTHHHHHHHHH-BTTEEECCEEESCTTTSTTCEEECGGGHHHHHHHHHTTCC
T ss_pred HHHhcCCCEEEEECCChhHHHHHHHHHHHHH-CCCEEECCCCccCCCCcCCcCCCCHHHHHHHHHHHHhCCC
Confidence 45788999999994 4555789999998 4876665532 1224578889999998887543
No 487
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=23.60 E-value=1.4e+02 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
.|+++++..+.| --.++|+.|+++|++|.++..
T Consensus 9 ~k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~r 41 (257)
T 3tl3_A 9 DAVAVVTGGASG---LGLATTKRLLDAGAQVVVLDI 41 (257)
T ss_dssp -CEEEEETTTSH---HHHHHHHHHHHHTCEEEEEES
T ss_pred CCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 456666655432 234789999999999998876
No 488
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=23.53 E-value=70 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
++|++.- +.|.+- ..|++.|.++||+|+.+.-..
T Consensus 4 ~~vlVtG--atG~iG--~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 4 KRALITG--IRGQDG--AYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEECSCC
T ss_pred CEEEEEC--CCChHH--HHHHHHHHHCCCEEEEEECCC
Confidence 5776663 334332 478999999999999987643
No 489
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.49 E-value=95 Score=28.10 Aligned_cols=72 Identities=3% Similarity=0.039 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHh
Q 012212 287 LSQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEG 366 (468)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~ea 366 (468)
.+.+..+.+.+++.+...+.||.+.++ . +-.++.++++++.+-.+|.. ||=..-..++.-+
T Consensus 62 td~~Ra~dL~~a~~Dp~i~aI~~~rGG-------~----------g~~rlL~~LD~~~i~~~PK~--~~GySDiT~L~~a 122 (327)
T 4h1h_A 62 SIRSRVADIHEAFNDSSVKAILTVIGG-------F----------NSNQLLPYLDYDLISENPKI--LCGFSDITALATA 122 (327)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEESCCC-------S----------CGGGGGGGCCHHHHHHSCCE--EEECTTHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCc-------h----------hHHHHhhhcchhhhccCCeE--EEecccccHHHHH
Confidence 356667788888888888888888776 1 11245566666666667755 7766666666666
Q ss_pred hh--cCCceeccc
Q 012212 367 LS--MGVPFLCWP 377 (468)
Q Consensus 367 l~--~GvP~v~~P 377 (468)
++ .|+..+.-|
T Consensus 123 l~~~~g~~t~hGp 135 (327)
T 4h1h_A 123 IYTQTELITYSGA 135 (327)
T ss_dssp HHHHHCBCEEECC
T ss_pred HHHhcCeEEEeCc
Confidence 64 344444333
No 490
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=23.46 E-value=42 Score=29.35 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCccChH--HHHHHHHHHHHCCCEEEEEECCcc
Q 012212 3 RQPHVLVIPYPAQGHVA--PLMKLATKIAERAIKVTVVNTQFI 43 (468)
Q Consensus 3 ~~~~Il~~~~~~~GH~~--p~~~LA~~L~~rGH~Vt~~~~~~~ 43 (468)
.|.|||++ .||.. -...|.+.|.+.|++|+++.....
T Consensus 3 ~m~~vLiV----~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~ 41 (259)
T 3rht_A 3 AMTRVLYC----GDTSLETAAGYLAGLMTSWQWEFDYIPSHVG 41 (259)
T ss_dssp ---CEEEE----ESSCTTTTHHHHHHHHHHTTCCCEEECTTSC
T ss_pred CCceEEEE----CCCCchhHHHHHHHHHHhCCceEEEeccccc
Confidence 46789998 36644 356688899999999999998765
No 491
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=23.44 E-value=23 Score=31.59 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
|||+++-.++.|- .+|..|.+.||+|+++...
T Consensus 3 mkI~iiGaGa~G~-----~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 3 LSVAIIGPGAVGT-----TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp CCEEEECCSHHHH-----HHHHHHHHHCTTCEEEESS
T ss_pred cEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEec
Confidence 6899997766653 6788899999999999875
No 492
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=23.41 E-value=1.8e+02 Score=24.27 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred CEEEEEcCC---------CccChHHHHHHHHHHHHCCCEEEEEECCc
Q 012212 5 PHVLVIPYP---------AQGHVAPLMKLATKIAERAIKVTVVNTQF 42 (468)
Q Consensus 5 ~~Il~~~~~---------~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~ 42 (468)
+||+++... ..-...=+....+.|.+.|++|++++...
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~ 52 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQG 52 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 588877652 22334556777888889999999999754
No 493
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=23.40 E-value=23 Score=31.41 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=33.8
Q ss_pred CCceeeccCchhHHHhhhc--C-CceeccccccchhhhHHHHHHHhhceeEeeccCCCccCHHHHHHHHHHHhc
Q 012212 351 VACFISHCGWNSTMEGLSM--G-VPFLCWPYFSDQYQNRNYICEAWKIGLQFFADENGIITRQEIQRKVLTLLK 421 (468)
Q Consensus 351 ~~~~I~hGG~~s~~eal~~--G-vP~v~~P~~~DQ~~na~rv~~~lG~g~~l~~~~~~~~t~~~l~~ai~~~l~ 421 (468)
++++|+=||=||+..+... + +|++.+... . +|. . .+ ++.+++.++++++++
T Consensus 69 ~DlvIvlGGDGT~L~aa~~~~~~~PilGIN~G-----------~-lGF--L---t~---~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 69 FDFIVSVGGDGTILRILQKLKRCPPIFGINTG-----------R-VGL--L---TH---ASPENFEVELKKAVE 122 (278)
T ss_dssp SSEEEEEECHHHHHHHHTTCSSCCCEEEEECS-----------S-SCT--T---CC---BBTTBCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHhCCCCcEEEECCC-----------C-Ccc--c---cc---cCHHHHHHHHHHHHh
Confidence 3559999999999998765 3 788877431 1 121 1 12 456677777777775
No 494
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.38 E-value=88 Score=28.48 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccCCchhHHHHhCCCceEEcccChHHHhcCCCCCceeeccCchhHHHhh
Q 012212 288 SQQQFAELALGLESLQKPFLWVIRQDFMNGSRAKFPDGFIERVSNRGKIVEWAPQEKVLGHSSVACFISHCGWNSTMEGL 367 (468)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~hGG~~s~~eal 367 (468)
+.+..+.+.+++.+...+.||.+.++ . +-.++.+++++..+-++|.. ||=+.-...+.-++
T Consensus 64 d~~Ra~dL~~a~~Dp~i~aI~~~rGG----------~-------g~~rlL~~lD~~~i~~~PK~--~~GySDiTaL~~al 124 (336)
T 3sr3_A 64 IQERAKELNALIRNPNVSCIMSTIGG----------M-------NSNSLLPYIDYDAFQNNPKI--MIGYSDATALLLGI 124 (336)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC----------S-------CGGGGGGGSCHHHHHHSCCE--EEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc----------c-------cHHHHhhhcChhHHhhCCeE--EEEechHHHHHHHH
Confidence 55667778888887777888887776 1 11256677777777777866 88888888888887
Q ss_pred h--cCCceecccc
Q 012212 368 S--MGVPFLCWPY 378 (468)
Q Consensus 368 ~--~GvP~v~~P~ 378 (468)
+ .|++.+--|.
T Consensus 125 ~~~~G~~t~hGp~ 137 (336)
T 3sr3_A 125 YAKTGIPTFYGPA 137 (336)
T ss_dssp HHHHCCCEEECCC
T ss_pred HHhcCceEEECCh
Confidence 7 4887777765
No 495
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=23.34 E-value=1.6e+02 Score=26.80 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=23.4
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012212 276 VVYVAFGSVAVLSQQQFAELALGLESLQKPFLWVIR 311 (468)
Q Consensus 276 vv~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 311 (468)
+++++.|+.. ....+..++++|.+.|+++.+.+.
T Consensus 7 il~~~~~~~G--hv~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 7 ILFANVQGHG--HVYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp EEEECCSSHH--HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEeCCCCc--ccccHHHHHHHHHhCCCEEEEEcC
Confidence 6777776543 223455678888888888887764
No 496
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=23.30 E-value=64 Score=28.59 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEECC
Q 012212 5 PHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 5 ~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
++|++.- +.|-+- ..|++.|.++||+|+.++-.
T Consensus 3 ~~vlVtG--atG~iG--~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 3 LKIAVTG--GTGFLG--QYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEC--CCcHHH--HHHHHHHHhCCCEEEEEeCC
Confidence 5777774 333332 36789999999999999875
No 497
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=23.20 E-value=1.3e+02 Score=25.17 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCCCceEEEecCCcccHHHHHHHhCCceEEEc
Q 012212 95 CLRDLIEKINQSNDCEPIRCVIADVTVGSALEVAESMGIARAAVV 139 (468)
Q Consensus 95 ~~~~ll~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~lgiP~v~~~ 139 (468)
.++.+++.+.+..-..+.-+||++.-...+...|+..|||+..+.
T Consensus 13 nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 13 NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeC
Confidence 466677766553211345778998755567788999999998754
No 498
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=23.18 E-value=83 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHHCCCEEEEEEC
Q 012212 1 MSRQPHVLVIPYPAQGHVAPLMKLATKIAERAIKVTVVNT 40 (468)
Q Consensus 1 m~~~~~Il~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~ 40 (468)
|.-+.|+++++..+.| --..+|+.|.++|++|....-
T Consensus 1 M~m~~k~vlVTGas~G---IG~aia~~L~~~G~~V~~~~r 37 (324)
T 3u9l_A 1 MVMSKKIILITGASSG---FGRLTAEALAGAGHRVYASMR 37 (324)
T ss_dssp ----CCEEEESSCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCEEEEECCCcH---HHHHHHHHHHHCCCEEEEecC
Confidence 4433467777755542 235889999999999987654
No 499
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=23.17 E-value=1.3e+02 Score=24.95 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCccC----hHHHHHHHHHHHHCCCEEEEEECC
Q 012212 4 QPHVLVIPYPAQGH----VAPLMKLATKIAERAIKVTVVNTQ 41 (468)
Q Consensus 4 ~~~Il~~~~~~~GH----~~p~~~LA~~L~~rGH~Vt~~~~~ 41 (468)
+++|.+++... +. ..-...|++.|+++|+.|..-..+
T Consensus 22 ~~~v~Vfggs~-~~~~~~~~~A~~lg~~La~~g~~lV~GGG~ 62 (199)
T 3qua_A 22 QWAVCVYCASG-PTHPELLELAAEVGSSIAARGWTLVSGGGN 62 (199)
T ss_dssp CCEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCEEEECCBC
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCEEEECCCc
Confidence 46888886554 32 345678889999999988665444
No 500
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=23.06 E-value=1.2e+02 Score=24.06 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=34.7
Q ss_pred CEEE-EEcCCCccChHHHHHHHHHHHHCCCEEEEEECCcchHHHHH
Q 012212 5 PHVL-VIPYPAQGHVAPLMKLATKIAERAIKVTVVNTQFIHKKIIA 49 (468)
Q Consensus 5 ~~Il-~~~~~~~GH~~p~~~LA~~L~~rGH~Vt~~~~~~~~~~i~~ 49 (468)
.|+. ++..+..--.++..-||..-+.-|++|+++-+......+.+
T Consensus 5 ~kl~II~~sG~~dka~~a~ilA~~AaA~G~eV~iFfTf~Gl~~l~K 50 (160)
T 3pnx_A 5 KKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRD 50 (160)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHTTCEEEEEECGGGGGGGBC
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHHHHcCCCEEEEEeehhHHHhcc
Confidence 3444 45555667788999999999999999999998776666654
Done!