BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012216
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 223/344 (64%), Gaps = 5/344 (1%)
Query: 24 QTLIRAGYWDSGNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVK 83
QT+++A YW + FPV+D++S+LFTHL C FAD+NS + ++++S +++ +FS FT V+
Sbjct: 2 QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 84 IKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143
+NPS+ TLLSIGGG + + Y+SMASNP+SRKSFIDSSI++AR YGF GLDL W + +
Sbjct: 62 RRNPSVKTLLSIGGG-IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 144 TSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNW 203
++ + N G L +EWR+AV EA ++S K +L+L A V YS + + Y V ++ L+W
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDW 179
Query: 204 VHVMTTEYSNPMWTNFTGAQAALYDP-NSVSNTEYGITEWIEEGLSADKMVLCLPFYGYA 262
V++M ++ P W+ TG AAL+DP N+ + + G WI+ GL A K VL P+YGYA
Sbjct: 180 VNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYA 239
Query: 263 WTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKI 322
W L + A TG A S DG + Y +I I + G +YNST V +YC G
Sbjct: 240 WRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNG--ATTVYNSTVVGDYCYAGTN 297
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLSQAAAE 366
W G+DD +++ KV YAK++ L GY+ W V D LS+AA++
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ 341
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 277 bits (709), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 214/347 (61%), Gaps = 14/347 (4%)
Query: 27 IRAGYWDSGNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKN 86
++ GYW +G +++++S LFTHL C FAD+N +L +SP ++ F FT V+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
PS+ T LSI GG N + Y MA P+SRKSFIDSSI++AR GF GLDL W + ++
Sbjct: 64 PSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHV 206
D N+G L EWR A++ EAR NS ++ L+LTA V+ SP Y V+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 MTTEYSNPMWT-NFTGAQAALYDP-NSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWT 264
M ++ P W+ + T + A L+DP N VS ++ GI WI+ G+ K+VL +PFYGYAW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---FSDDGLVTYKEINNRIKNY--GPNVQVMYNSTYVVNYCSI 319
LV +G+ A A G + DDG +TY NRI++Y +YN+T V +YC
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTY----NRIRDYIVESRATTVYNATIVGDYCYS 296
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLSQAAAE 366
G W +DD + VR KV+Y K + L GY+ W V+ D W LS+ A++
Sbjct: 297 GSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 214/347 (61%), Gaps = 14/347 (4%)
Query: 27 IRAGYWDSGNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKN 86
++ GYW +G +++++S LFTHL C FAD+N +L +SP ++ F FT V+ KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
PS+ T LSI GG N + Y MA P+SRKSFIDSSI++AR GF GLDL W + ++
Sbjct: 64 PSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA 122
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHV 206
D N+G L EWR A++ EAR NS ++ L+LTA V+ SP Y V+S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 MTTEYSNPMWT-NFTGAQAALYDP-NSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWT 264
M ++ P W+ + T + A L+DP N VS ++ GI WI+ G+ K+VL +PFYGYAW
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSD-GINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 265 LVKPEDNGIGAAATGPA---FSDDGLVTYKEINNRIKNY--GPNVQVMYNSTYVVNYCSI 319
LV +G+ A A G + DDG +TY NRI++Y +YN+T V +YC
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTY----NRIRDYIVESRATTVYNATIVGDYCYS 296
Query: 320 GKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLSQAAAE 366
G W +DD + VR KV+Y K + L GY+ W V+ D W LS+ A++
Sbjct: 297 GSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 171/336 (50%), Gaps = 27/336 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDIVKIKNPSITTLLSIG 96
F D++ +L THL+ FA + T+++LS + +DE + F + K+ NP + TLL+IG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKM-NPKLKTLLAIG 76
Query: 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIG 152
G N ++ M + ++R++F++S+I+ R Y F GLDL W + + + DK
Sbjct: 77 GWNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFT 135
Query: 153 ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212
L ++ A EA+ S K +L+L+A V A Y VD I Q L++V++M ++
Sbjct: 136 TLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFH 194
Query: 213 NPMWTNFTGAQAALYDPNSVS------NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLV 266
W TG + LY S N + + +W+E+G A K++L +P YG ++TL
Sbjct: 195 GS-WEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMPTYGRSFTLA 253
Query: 267 KPEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321
D +GA AT GP + G++ Y E+ G Q + + V Y
Sbjct: 254 SSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK--VPYIFRDN 308
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G W + D +
Sbjct: 309 QWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 27/336 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDIVKIKNPSITTLLSIG 96
F D++ +L THL+ FA + T+++LS + +DE + F + K+ NP + TLL+IG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKM-NPKLKTLLAIG 76
Query: 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIG 152
G N ++ M + ++R++F++S+I+ R Y F GLDL W + + + DK
Sbjct: 77 GWNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFT 135
Query: 153 ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212
L ++ A EA+ S K +L+L+A V A Y VD I Q L++V++M ++
Sbjct: 136 TLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFH 194
Query: 213 NPMWTNFTGAQAALYDPNSVS------NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLV 266
W TG + LY S N + + +W+++G A K++L +P YG ++TL
Sbjct: 195 GS-WEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLA 253
Query: 267 KPEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321
D +GA AT GP + G++ Y E+ G Q + + V Y
Sbjct: 254 SSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK--VPYIFRDN 308
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G W + D +
Sbjct: 309 QWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 27/336 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDIVKIKNPSITTLLSIG 96
F D++ +L THL+ FA + T+++LS + +DE + F + K+ NP + TLL+IG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKM-NPKLKTLLAIG 76
Query: 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIG 152
G N ++ M + ++R++F++S+I+ R Y F GLDL W + + + DK
Sbjct: 77 GWNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFT 135
Query: 153 ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212
L ++ A EA+ S K +L+L+A V A Y VD I Q L++V++M ++
Sbjct: 136 TLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFH 194
Query: 213 NPMWTNFTGAQAALYDPNSVS------NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLV 266
W TG + LY S N + + +W+++G A K++L +P YG ++TL
Sbjct: 195 GS-WEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLA 253
Query: 267 KPEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321
D +GA AT GP + G++ Y E+ G Q + + V Y
Sbjct: 254 SSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK--VPYIFRDN 308
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G W + D +
Sbjct: 309 QWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 27/336 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDIVKIKNPSITTLLSIG 96
F D++ +L THL+ FA + T+++LS + +DE + F + K+ NP + TLL+IG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKM-NPKLKTLLAIG 76
Query: 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIG 152
G N ++ M + ++R++F++S+I+ R Y F GLDL W + + + DK
Sbjct: 77 GWNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFT 135
Query: 153 ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212
L ++ A EA+ S K +L+L+A V A Y VD I Q L++V++M ++
Sbjct: 136 TLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFH 194
Query: 213 NPMWTNFTGAQAALYDPNSVS------NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLV 266
W TG + LY S N + + +W+++G A K++L +P YG ++TL
Sbjct: 195 GS-WEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLA 253
Query: 267 KPEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321
D +GA AT GP + G++ Y E+ G Q + + V Y
Sbjct: 254 SSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK--VPYIFRDN 308
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G W + D +
Sbjct: 309 QWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 167/335 (49%), Gaps = 23/335 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGG 97
F D+N L THL+ FA + + ++ +D + F + K KN + TLL+IGG
Sbjct: 20 FMPDDINPCLCTHLIYAFAGMQNNEIT-TIEWNDVTLYQAFNGL-KNKNSQLKTLLAIGG 77
Query: 98 GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIGI 153
N + +++M S P +R++FI S IK R Y F GLD W + + DK+ +
Sbjct: 78 WNF-GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 136
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L +E R A + EA+ +K +L++TA VA + + Y + + QYL+++HVMT +
Sbjct: 137 LVQEMREAFEQEAK-QINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 195
Query: 214 PMWTNFTGAQAALYD------PNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVK 267
W +TG + LY N+ N +Y + W + G A+K+++ P YG+ + L
Sbjct: 196 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 254
Query: 268 PEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y EI +KN +++ V Y G +
Sbjct: 255 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 311
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W G+D+V++ +K + K K G W + D +
Sbjct: 312 WVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 23/335 (6%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGG 97
F D+N L THL+ FA + + ++ +D + F + K KN + TLL+IGG
Sbjct: 24 FMPDDINPCLCTHLIYAFAGMQNNEIT-TIEWNDVTLYQAFNGL-KNKNSQLKTLLAIGG 81
Query: 98 GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS----WDKYNIGI 153
N + +++M S P +R++FI S IK R Y F GLD W + + DK+ +
Sbjct: 82 WNF-GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTV 140
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L +E R A + EA+ +K +L++TA VA + + Y + + QYL+++HVMT +
Sbjct: 141 LVQEMREAFEQEAK-QINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG 199
Query: 214 PMWTNFTGAQAALYD------PNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVK 267
W +TG + LY N+ N +Y + W + G A+K+++ P YG+ + L
Sbjct: 200 -SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 258
Query: 268 PEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKI 322
P + GIGA + GP + G+ Y EI +KN +++ V Y G +
Sbjct: 259 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 315
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W G+D++++ +K + K K G W + D +
Sbjct: 316 WVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDF 350
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 27/336 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDIVKIKNPSITTLLSIG 96
F D++ +L THL+ FA + T+++LS + +DE + F + K+ NP + TLL+IG
Sbjct: 20 FLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKM-NPKLKTLLAIG 76
Query: 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIG 152
G N ++ M + ++R++F++S+I+ R Y F GLDL W + + + DK
Sbjct: 77 GWNF-GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFT 135
Query: 153 ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212
L ++ A EA+ S K +L+L+A V A Y VD I Q L++V++M ++
Sbjct: 136 TLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFH 194
Query: 213 NPMWTNFTGAQAALYDPNSVS------NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLV 266
W TG + LY S N + + +W+++G A K++L +P YG ++TL
Sbjct: 195 G-SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLA 253
Query: 267 KPEDNGIGAAAT-----GPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321
D +GA AT GP + G++ Y E+ G Q + + V Y
Sbjct: 254 SSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV---CSWKGATKQRIQDQK--VPYIFRDN 308
Query: 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W GFDDVE+ + KVSY K+K L G W + D +
Sbjct: 309 QWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 24/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ + ++ + +K +NP++ TLLS
Sbjct: 18 GSCFPDA-LDRFLCTHIIYSFANISND--HIDTWEWNDVTLYGMLNTLKNRNPNLKTLLS 74
Query: 95 IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGIL 154
+GG N + +S +ASN SR++FI S R +GF GLDL+W + DK + L
Sbjct: 75 VGGWNFGS-QRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKQHFTTL 132
Query: 155 FKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNP 214
KE +A EA+ K QL+L+A ++ + ++Y + I Q+L+++ +MT ++
Sbjct: 133 IKEMKAEFIKEAQ--PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHG- 189
Query: 215 MWTNFTGAQAALY------DPNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W TG + L+ P+ SNT+Y + + G A K+V+ +P +G ++TL
Sbjct: 190 AWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASS 249
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
E G+GA +GP + G + Y EI + ++ G V + V Y + G W
Sbjct: 250 E-TGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRILGQQ--VPYATKGNQW 304
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
G+DD E+V+ KV Y K+++L G W + D +
Sbjct: 305 VGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDF 338
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 171/334 (51%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP + TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S++AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPE--RFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTA 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + + L+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFAREAQAGTER--LLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ NS SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ +G GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 170/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP + TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S +AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPE--RFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTA 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + + L+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFAREAQAGTER--LLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ NS SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ +G GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 170/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP + TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S +AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPE--RFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTA 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + + L+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFAREAQAGTER--LLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ NS SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 170/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP + TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S++AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPE--RFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ N SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPVSGPGVPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 169/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP + TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYTFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S +AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPE--RFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ N SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPVSGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 169/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP++ TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 95 IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW-DKYNIGI 153
+GG N + +S +AS SR++FI S R +GF GLDL+W + W DK ++
Sbjct: 75 VGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG--WRDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ NS SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 G-WRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+GA +GP + G++ Y EI + + +G + V Y + G W
Sbjct: 249 STR-VGAPISGPGIPGQFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 172/334 (51%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP++ TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 95 IGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153
+GG N P +S +AS SR++FI S R +GF GLDL+W + DK ++
Sbjct: 75 VGGWNFGPQ--RFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V+ + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALY----DPNS-VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ D +S SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G++ Y EI + ++ G + V Y + G W
Sbjct: 249 KTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ--GATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 170/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP++ TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 95 IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW-DKYNIGI 153
+GG N + +S +AS SR++FI S R +GF GLDL+W + W DK ++
Sbjct: 75 VGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP--GWRDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ NS SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 G-WRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP + G + Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 167/340 (49%), Gaps = 33/340 (9%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDI--VKIKNPSITTLLSI 95
F +++ L THL+ FA + + ++ + E+ ++ + +K KN + TLL+I
Sbjct: 20 FKPGNIDPCLCTHLIYAFAGMQNNE----ITYTHEQDLRDYEALNGLKDKNTELKTLLAI 75
Query: 96 GG---GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW----DK 148
GG G P +S+M S P +R+ FI S I+ R Y F GL+L W + + DK
Sbjct: 76 GGWKFGPAP----FSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDK 131
Query: 149 YNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMT 208
+ +L KE R A + E+ +L+LT+ A + Y + + Q L+++ VMT
Sbjct: 132 HLFSVLVKEMRKAFEEESVEKDI-PRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMT 190
Query: 209 TEYSNPMWTNFTGAQAALYD-PNSVS-----NTEYGITEWIEEGLSADKMVLCLPFYGYA 262
+ +P +TG + LY P + N + I+ W + G +++K+++ P YG+
Sbjct: 191 YDLHDPK-DGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHT 249
Query: 263 WTLVKPEDNGIGAA--ATGPA--FSDD-GLVTYKEINNRIKNYGPNVQVMYNSTYVVNYC 317
+ L P GIGA +TGP ++D+ GL+ Y E+ + V +++ V Y
Sbjct: 250 FILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV---WDAPQEVPYA 306
Query: 318 SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
G W G+D+V + ++K + K+ L G W + D +
Sbjct: 307 YQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 168/334 (50%), Gaps = 25/334 (7%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLS 94
G+ FP + ++ L TH++ FA++++ E+ ++ + + +K +NP++ TLLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 95 IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW-DKYNIGI 153
+GG N + +S +AS SR++FI S R +GF GLDL+W W DK ++
Sbjct: 75 VGGWNYGS-QRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPG--WRDKRHLTT 131
Query: 154 LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213
L KE +A EA+ + QL+L+A V + Y + I ++L+++ ++T ++
Sbjct: 132 LVKEMKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHG 189
Query: 214 PMWTNFTGAQAALYDPNS-----VSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKP 268
W G + L+ N SN +Y ++ + G A+K+V+ +P +G ++TL
Sbjct: 190 -AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 269 EDNGIGAAATGPAFSD-----DGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIW 323
+ + +GA +GP G++ Y EI + + +G + V Y + G W
Sbjct: 249 KTD-VGAPISGPGIPGRFTKWKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQW 303
Query: 324 FGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+DD E+V+ K Y K ++L G W + D +
Sbjct: 304 VAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 28/335 (8%)
Query: 38 FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGG 97
F +++ L +HL+ FA + + ++ + E + +K KNP + LLSIGG
Sbjct: 21 FTPENIDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGG 78
Query: 98 ---GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGIL 154
G+ + M + +SR FI+S I R + F GLD+SW + + + + +L
Sbjct: 79 YLFGSK----GFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQK-ENTHFTVL 133
Query: 155 FKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEY--- 211
E A + S+K +L+LTA V+ +Y V+ + + L+++++++ ++
Sbjct: 134 IHELAEAFQKDF-TKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGS 192
Query: 212 -SNPMWTNFTGAQAALYD---PNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVK 267
P+ T + + P+S N EY + WI +G+ ++K+V+ +P YG+++TL
Sbjct: 193 WEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLAS 252
Query: 268 PEDNGIGAAATGPAFS-----DDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKI 322
E +GA A+GP + G + Y EI +K G + + + V Y G
Sbjct: 253 AETT-VGAPASGPGAAGPITESSGFLAYYEICQFLK--GAKITRLQDQQ--VPYAVKGNQ 307
Query: 323 WFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357
W G+DDV+++ KV + K L G W + D +
Sbjct: 308 WVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 143/334 (42%), Gaps = 49/334 (14%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIAR 128
D+ N + K+K NP++ T++S+GG N +S +A+ ++R+ F +S++ R
Sbjct: 103 DQPIAGNINQLNKLKQTNPNLKTIISVGGWTWSN--RFSDVAATAATREVFANSAVDFLR 160
Query: 129 LYGFQGLDLSWPH---------ANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTA 179
Y F G+DL W + + DK N +L + R +D + K L
Sbjct: 161 KYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLT--- 217
Query: 180 EVAYSPHSTAAAYT-VDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL-YDPNSVS---- 233
+A +T AA T + I ++W+++MT ++ N W + A L YDP + +
Sbjct: 218 -IASGASATYAANTELAKIAAIVDWINIMTYDF-NGAWQKISAHNAPLNYDPAASAAGVP 275
Query: 234 -----NTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPA----FSD 284
N G ++ G+ A K+VL +PFYG W NG TG + +
Sbjct: 276 DANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEA 335
Query: 285 DGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEAVRVKVSYAKEK 342
Y N I G +N T V Y + K + +DD E+V K +Y K K
Sbjct: 336 GSFDFYDLEANYINKNG--YTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSK 393
Query: 343 KLRGYYGWEVSYDHYWMLSQAAAEEDNKNRQNKL 376
L G WE+S D NK QNKL
Sbjct: 394 GLGGAMFWELSGDR------------NKTLQNKL 415
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 158/351 (45%), Gaps = 48/351 (13%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLS----------PSDE------------ 72
G G D+ + FTH++ FA++ + E+ LS P D+
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 73 KQFSNFTDIVKIKNPSITTLLSIGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYG 131
KQ ++K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + G
Sbjct: 75 KQMY----LLKKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLG 127
Query: 132 FQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA 191
F G+D++W + + +L K R A+D + + + + +LT P +
Sbjct: 128 FDGIDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNY-NK 186
Query: 192 YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----DPNSVS-NTEYGITEWIEEG 246
+ + +YL++ ++M ++S W +G + ++ P S +++ + ++I+ G
Sbjct: 187 LKLAEMDKYLDFWNLMAYDFSGS-WDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 247 LSADKMVLCLPFYGYAWTLVKPEDNGIGAA--ATGPAFSDDGLVTYKEINNRIKNYGPNV 304
+ A+K+VL +P YG A+ +GIG + G ++G+ YK++ + G V
Sbjct: 246 VPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQV 297
Query: 305 QVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+ + +Y + +D V+ K Y + + G WE S D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 48/351 (13%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLS----------PSDE------------ 72
G G D+ + FTH++ FA++ + E+ LS P D+
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 73 KQFSNFTDIVKIKNPSITTLLSIGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYG 131
KQ ++K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + G
Sbjct: 75 KQMY----LLKKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLG 127
Query: 132 FQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA 191
F G+D+ W + + +L K R A+D + + + + +LT P +
Sbjct: 128 FDGIDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNY-NK 186
Query: 192 YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----DPNSVS-NTEYGITEWIEEG 246
+ + +YL++ ++M ++S W +G + ++ P S +++ + ++I+ G
Sbjct: 187 LKLAEMDKYLDFWNLMAYDFSGS-WDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 247 LSADKMVLCLPFYGYAWTLVKPEDNGIGAA--ATGPAFSDDGLVTYKEINNRIKNYGPNV 304
+ A+K+VL +P YG A+ +GIG + G ++G+ YK++ + G V
Sbjct: 246 VPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQV 297
Query: 305 QVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+ + +Y + +D V+ K Y + + G WE S D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 48/351 (13%)
Query: 35 GNGFPVSDVNSALFTHLMCGFADVNSTSYELSLS----------PSDE------------ 72
G G D+ + FTH++ FA++ + E+ LS P D+
Sbjct: 16 GRGHNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCI 74
Query: 73 KQFSNFTDIVKIKNPSITTLLSIGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYG 131
KQ ++K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + G
Sbjct: 75 KQMY----LLKKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLG 127
Query: 132 FQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA 191
F G+D+ W + + +L K R A+D + + + + +LT P +
Sbjct: 128 FDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNY-NK 186
Query: 192 YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----DPNSVS-NTEYGITEWIEEG 246
+ + +YL++ ++M ++S W +G + ++ P S +++ + ++I+ G
Sbjct: 187 LKLAEMDKYLDFWNLMAYDFSGS-WDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 247 LSADKMVLCLPFYGYAWTLVKPEDNGIGAA--ATGPAFSDDGLVTYKEINNRIKNYGPNV 304
+ A+K+VL +P YG A+ +GIG + G ++G+ YK++ + G V
Sbjct: 246 VPANKIVLGMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQV 297
Query: 305 QVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+ + +Y + +D V+ K Y + + G WE S D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 157/342 (45%), Gaps = 43/342 (12%)
Query: 42 DVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQF--SNFTD-------------IVK 83
D+ TH++ FA+V + E+ ++ S EK + +++D ++K
Sbjct: 63 DLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLK 122
Query: 84 IKNPSITTLLSIGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142
+N ++ LLSIGG +PN++ AS + RK+F +++K+ + GF GLD+ W +
Sbjct: 123 KQNRNLKVLLSIGGWTYSPNFA---PAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP 179
Query: 143 NTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLN 202
+ +L KE R A+D + N+ +LT P + D + Q L+
Sbjct: 180 ENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKD-MDQQLD 238
Query: 203 WVHVMTTEYSNPMWTNFTGAQAALYDPNSVS-----NTEYGITEWIEEGLSADKMVLCLP 257
+ ++M +Y+ +++ +G QA +Y+ S NT+ + + G+ A+K+VL +P
Sbjct: 239 FWNLMAYDYAGS-FSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMP 297
Query: 258 FYGYAWTLV----KPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYV 313
YG ++ KP NG+G + ++G+ YK + G V+ +
Sbjct: 298 LYGRSFANTDGPGKPY-NGVGQGSW-----ENGVWDYKA----LPQAGATEHVLPDIMAS 347
Query: 314 VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+Y + K +D+ + +K Y K L G W+ S D
Sbjct: 348 YSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 43/342 (12%)
Query: 42 DVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQF--SNFTD-------------IVK 83
D+ TH++ FA+V + E+ ++ S EK + +++D ++K
Sbjct: 25 DLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLK 84
Query: 84 IKNPSITTLLSIGGGN-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142
+N ++ LLSIGG +PN++ AS + RK+F +++K+ + GF GLD+ W +
Sbjct: 85 KQNRNLKVLLSIGGWTYSPNFA---PAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP 141
Query: 143 NTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLN 202
+ +L +E R A+D + N+ +LT P + D + Q L+
Sbjct: 142 ENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKD-MDQQLD 200
Query: 203 WVHVMTTEYSNPMWTNFTGAQAALYDPNSVS-----NTEYGITEWIEEGLSADKMVLCLP 257
+ ++M +Y+ +++ +G QA +Y+ S NT+ + + G+ A+K+VL +P
Sbjct: 201 FWNLMAYDYAG-SFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMP 259
Query: 258 FYGYAWTLV----KPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYV 313
YG ++ KP NG+G + ++G+ YK + G V+ +
Sbjct: 260 LYGRSFANTDGPGKPY-NGVGQGSW-----ENGVWDYKA----LPQAGATEHVLPDIMAS 309
Query: 314 VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+Y + K +D+ + +K Y K L G W+ S D
Sbjct: 310 YSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 38/346 (10%)
Query: 35 GNGFPVSDVNSALFTHLMCGFAD--VNSTSYELSLSPSDEKQFSN--FTDI--------- 81
G F +D+ ++ H++ F + V+ T Y EK +S+ + DI
Sbjct: 34 GRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVK 93
Query: 82 ----VKIKNPSITTLLSIGGGNNPNYST-YSSMASNPSSRKSFIDSSIKIARLYGFQGLD 136
+K N S+ +LSIGG +ST + + AS ++R +F ++++ + +GF G+D
Sbjct: 94 QLYKLKKANRSLKIMLSIGGWT---WSTNFPAAASTEATRATFAKTAVEFMKDWGFDGID 150
Query: 137 LSWPHANTSWDKYNIGILFKEWRAAVDLEARN--NSSKSQLILTAEVAYSPHSTAAAYTV 194
+ W + + D N+ +L + R +D + N QL + A S ++ +
Sbjct: 151 VDWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQL 210
Query: 195 DSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----DPNSVS-NTEYGITEWIEEGLSA 249
S+ L+ +++M +Y+ W + +G Q LY +P+S +T+ + +I G+ A
Sbjct: 211 GSV---LDNINLMAYDYAGS-WDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPA 266
Query: 250 DKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYN 309
K++L +P YG A V + G + G + G+ YK + G V
Sbjct: 267 SKIILGMPIYGRA--FVGTDGPGKPYSTIGEGSWESGIWDYK----VLPKAGATVITDSA 320
Query: 310 STYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355
+ +Y S + +D + VR KVSYAK L G WE S D
Sbjct: 321 AGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 162/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D++W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 162/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D++W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D+ W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D+ W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D+ W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 89
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+D+ W + +
Sbjct: 90 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE 149
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 150 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 208
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 209 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 267
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 268 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 327
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYC--SIGKIWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 328 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 385
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 386 YKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 161/383 (42%), Gaps = 68/383 (17%)
Query: 38 FPVSDVNSA---LFTHLMCGFADVNS---TSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
FPVS++ A TH+ F D+NS +++ + + + + N +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 92 LLSIGGGNNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW 146
+ SIGG N ++ Y + P+SR F S ++I + YGF G+++ W + +
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAE 150
Query: 147 DKYNIGILFKEWRAAVDLEARNNSSKS-QLILTAEVAYSPHSTAAAYT-VDSIRQYLNWV 204
I L +E R ++ + + ++ LT A + Y+ + I L+++
Sbjct: 151 VDGFIAAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYI 209
Query: 205 HVMTTEYSNPMWTNFTGAQAALY-----------------------------DPNSVSNT 235
++MT + + P W T QAAL+ P S++
Sbjct: 210 NLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 236 EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF------------- 282
+ EG+ + K+V+ +PFYG A+ V + G ++ + P
Sbjct: 269 AAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGC 328
Query: 283 ------SDDGLVTYKEINNRIK-NYGPNVQVMYNSTYVVNYCSIGK--IWFGFDDVEAVR 333
D + +Y+++ ++ NYG Q ++N Y + ++ +DD E+ +
Sbjct: 329 EECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 334 VKVSYAKEKKLRGYYGWEVSYDH 356
K Y K+++L G W + D+
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 169/387 (43%), Gaps = 77/387 (19%)
Query: 39 PVSDVNSALFTHLMCGFADV---NSTSYELSLSPSDEK-QFSNFTDIVKIKNPSITTLLS 94
P ++ +HL+ G+A + N +Y ++ + K QFS T + K K P + LLS
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSL-KRKYPHLKVLLS 82
Query: 95 IGGGNN--PNY-STYSSMASNPSSRK-SFIDSSIKIARLYGFQGLDLSWPHANTSWDKY- 149
+GG ++ P++ + Y + R+ FI S+ ++ + YGF GLDL++ K
Sbjct: 83 VGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVH 142
Query: 150 -NIGI--------------------LFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHST 188
++G+ L KE A+ + +++ +L+ V + +ST
Sbjct: 143 GDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNST 202
Query: 189 AAAYTVDSIRQYLNWVHVMTTEY----SNPMWTNFTGAQAALYDPNSVS------NTEYG 238
+ + ++ +++V++ T ++ NP +++ A +Y P+ N ++
Sbjct: 203 WY-FDIPALNGLVDFVNLATFDFLTPARNPEEADYS---APIYHPDGSKDRLAHLNADFQ 258
Query: 239 ITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI----------GAAATGPAFSDDGLV 288
+ W+ +G ++K+ L + YG AW L K D+G+ G A G GL+
Sbjct: 259 VEYWLSQGFPSNKINLGVATYGNAWKLTK--DSGLEGVPVVPETSGPAPEGFQSQKPGLL 316
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYCS------------------IGKIWFGFDDVE 330
+Y EI ++ N P Q + + + S IW +DD +
Sbjct: 317 SYAEICGKLSN--PQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPD 374
Query: 331 AVRVKVSYAKEKKLRGYYGWEVSYDHY 357
+ K +YA+ K L G +++SYD +
Sbjct: 375 SASNKAAYARVKNLGGVALFDLSYDDF 401
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGG--GNNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 246 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 300
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 301 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 360
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 361 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 417
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 418 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 477
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I ++ + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 478 DYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 534
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 535 GLFSWEIDADNGDILNSMNASLGN 558
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I ++ + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D++W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I ++ + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 158/410 (38%), Gaps = 84/410 (20%)
Query: 23 AQTLIRAGYWDSGN------GFPVSDVNSALFTHLMCGFA-----DVNSTS--------- 62
AQ L GY++ G G + ++ THL F + + T+
Sbjct: 23 AQPLXSVGYFNGGGDVTAGPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHL 82
Query: 63 YELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDS 122
+E+ LSP + + K +NP + LLS+GG +S A+ SR FI S
Sbjct: 83 HEIWLSPKVQADLQKLPALRK-QNPDLKVLLSVGGWG---ARGFSGAAATAESRAVFIRS 138
Query: 123 SIKIARLYGFQGLDLSWPH-ANTSW--------DKYNIGILFKEWRAAVDLEARNNSSKS 173
+ KI + YG G+DL W N +W D+ N L K R AV
Sbjct: 139 AQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAV---------GE 189
Query: 174 QLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYD----P 229
Q ++T V + S + V ++ LN++++ T Y T + + LYD P
Sbjct: 190 QKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXT--YDXAYGTQYFNSN--LYDSSHWP 245
Query: 230 NSVSNTEYG----ITEWIEEGLSADKMVLCLPFYGYA----------WTLVKPEDNGIGA 275
+ +Y + ++ GL + L + FYG WT ++N +
Sbjct: 246 TVAAADKYSADFVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQ 305
Query: 276 AATGPA-----------FSDDGLVTYKEINNRIKNYGPNVQVM--YNSTYVVNYCSI--- 319
GP S D V Y +I ++ N P + ++ V + S+
Sbjct: 306 PYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLN-DPQKRFTEHWDDEAKVPWLSVQSA 364
Query: 320 -GKIWFG--FDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLSQAAAE 366
GK F +++ +V +K Y K K L G WE D L++ AE
Sbjct: 365 EGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADDQNQLARQLAE 414
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I ++ + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ ++ G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 36/324 (11%)
Query: 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKI 126
D+ NF ++ +K +P + L SIGG ++P + + R F+ S +
Sbjct: 223 DDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEF 277
Query: 127 ARLYGF-QGLDLSW---------PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
+ + F G+D+ W P+ + D +L KE RA +D + K +L
Sbjct: 278 LQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 177 LTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL----YDPNSV 232
+A A AY V + ++ + +M+ + G Q AL + P++
Sbjct: 338 -SAISAGKDKIDKVAYNV--AQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTA 394
Query: 233 SNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGI--GAAATGPAFS--DDGLV 288
T G+ + +G+ K+V+ YG WT V N I ATGP ++G+V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 289 TYKEINNRIKNYGPNVQVMYNSTYVVNYC---SIGKIWFGFDDVEAVRVKVSYAKEKKLR 345
Y++I + + Q Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 346 GYYGWEVSYDHYWMLSQAAAEEDN 369
G + WE+ D+ +L+ A N
Sbjct: 512 GLFSWEIDADNGDILNSMNASLGN 535
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 132/330 (40%), Gaps = 67/330 (20%)
Query: 82 VKIKNPSITTLLSIGGG--NNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K +NP + + SIGGG ++P Y + +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFV-----DKKNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 WPHANT------SWDKYNIG----ILFKEWRAAVD-LEARNNSSKSQLILTAEVAYSPHS 187
W D N G L +E R +D LEA + LT+ +
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYE---LTSAIGVGYDK 349
Query: 188 TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----------DPNSVSN--- 234
D++ QY++++ MT ++ W N G Q ALY D V
Sbjct: 350 IEDVDYADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGE 407
Query: 235 --------TEYGITEWIEEGLSADKMVLCLPFYGYAW------TLVKPEDNGIGAA---- 276
+ GI + +G+ A+K+VL YG W TL P D G A
Sbjct: 408 PYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKL 467
Query: 277 --ATGPAFSDDGLVTYKEI--------NNRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGF 326
+T +DG++ YK I N I + + +V N S G++ F
Sbjct: 468 KGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITF 525
Query: 327 DDVEAVRVKVSYAKEKKLRGYYGWEVSYDH 356
DD +V K +YAK L G + WE+ D+
Sbjct: 526 DDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 131/330 (39%), Gaps = 67/330 (20%)
Query: 82 VKIKNPSITTLLSIGG--GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K +NP + + SIGG ++P Y + +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFV-----DKKNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 WPHANT------SWDKYNIG----ILFKEWRAAVD-LEARNNSSKSQLILTAEVAYSPHS 187
W D N G L +E R +D LEA + LT+ +
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYE---LTSAIGVGYDK 349
Query: 188 TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----------DPNSVSN--- 234
D++ QY++++ MT ++ W N G Q ALY D V
Sbjct: 350 IEDVDYADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGE 407
Query: 235 --------TEYGITEWIEEGLSADKMVLCLPFYGYAW------TLVKPEDNGIGAA---- 276
+ GI + +G+ A+K+VL YG W TL P D G A
Sbjct: 408 PYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKL 467
Query: 277 --ATGPAFSDDGLVTYKEI--------NNRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGF 326
+T +DG++ YK I N I + + +V N S G++ F
Sbjct: 468 KGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITF 525
Query: 327 DDVEAVRVKVSYAKEKKLRGYYGWEVSYDH 356
DD +V K +YAK L G + WE+ D+
Sbjct: 526 DDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 132/330 (40%), Gaps = 67/330 (20%)
Query: 82 VKIKNPSITTLLSIGG--GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K +NP + + SIGG ++P Y + +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFV-----DKKNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 W------PHANTSWDKYNIG----ILFKEWRAAVD-LEARNNSSKSQLILTAEVAYSPHS 187
W A D N G L +E R +D LEA + LT+ +
Sbjct: 293 WMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYE---LTSAIGVGYDK 349
Query: 188 TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY----------DPNSVSN--- 234
D++ QY++++ MT ++ W N G Q ALY D V
Sbjct: 350 IEDVDYADAV-QYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGE 407
Query: 235 --------TEYGITEWIEEGLSADKMVLCLPFYGYAW------TLVKPEDNGIGAA---- 276
+ GI + +G+ A+K+VL YG W TL P D G A
Sbjct: 408 PYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKL 467
Query: 277 --ATGPAFSDDGLVTYKEI--------NNRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGF 326
+T +DG++ YK I N I + + +V N S G++ F
Sbjct: 468 KGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITF 525
Query: 327 DDVEAVRVKVSYAKEKKLRGYYGWEVSYDH 356
DD +V K +YAK L G + WE+ D+
Sbjct: 526 DDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 130/324 (40%), Gaps = 52/324 (16%)
Query: 82 VKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKI---ARLYGFQG---- 134
+K KNP + ++S+GG +S A+ +SR+ + S I + L F+G
Sbjct: 111 LKAKNPKLKVMISLGGWTWS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGA 168
Query: 135 -----------LDLSWPHANTSW---------DKYNIGILFKEWRAAVDLEARNNSSKSQ 174
+D WP N+ D+ N L E+R +D N+ K
Sbjct: 169 GAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKK-- 226
Query: 175 LILTAEVAYSPHSTAAAYTVDSIR-QYLNWVHVMTTEYSNPMWTNFTGAQAALYD----- 228
+L+A + +P A D + L++ + + TG QA LYD
Sbjct: 227 YVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADP 286
Query: 229 --PNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDG 286
P+ + + + +++ G+ ++ L L YG WT K + GPA +D
Sbjct: 287 RAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWGPA-TDGA 339
Query: 287 LVTYKEIN---NRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKK 343
TY+ N +++K G + Y++ + G W+ +D++ + K Y K
Sbjct: 340 PGTYETANEDYDKLKTLGTD---HYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKG 396
Query: 344 LRGYYGWEVSYDHYWMLSQAAAEE 367
L G WE+S D L A +++
Sbjct: 397 LGGGMWWELSGDRNGELVGAMSDK 420
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 47/308 (15%)
Query: 93 LSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKI-ARLYGFQGLDLSWPHANTSWDKYNI 151
SIGG + +Y +S++A NP R+ F+ S + R F +D+ W + D+ NI
Sbjct: 216 FSIGGWSLSSY--FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 152 G---------ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQY-- 200
+L KE R+A+D S+ E++ + A +I Q
Sbjct: 274 SSDKDGENYVLLIKELRSALD-------SRFGYSNRXEISIACSGVXAXLKKSNIDQLVA 326
Query: 201 --LNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEY------GITEWIEEGLSADKM 252
L+ +++M+ ++ +W ++ G LY P E +++ L
Sbjct: 327 NGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPME 386
Query: 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPAFS--DDGLVTYKEINNRIKNY---------G 301
+ L + Y + V + GPA ++G + +I +KNY G
Sbjct: 387 XIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI---VKNYMDAEHSLSMG 443
Query: 302 PNVQVMYNSTYV---VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYW 358
N V+ T + + D V+ K YA + KL G + W D
Sbjct: 444 KNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CG 502
Query: 359 MLSQAAAE 366
+L+ AA E
Sbjct: 503 LLANAARE 510
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 117/308 (37%), Gaps = 47/308 (15%)
Query: 93 LSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKI-ARLYGFQGLDLSWPHANTSWDKYNI 151
SIGG + +Y +S++A NP R+ F+ S + R F +D+ W + D+ NI
Sbjct: 216 FSIGGWSLSSY--FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 152 G---------ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQY-- 200
+L E R+A+D S+ E++ + A +I Q
Sbjct: 274 SSDXDGENYVLLIXELRSALD-------SRFGYSNRXEISIACSGVXAXLKXSNIDQLVA 326
Query: 201 --LNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEY------GITEWIEEGLSADKM 252
L+ +++M+ ++ +W ++ G LY P E +++ L
Sbjct: 327 NGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPME 386
Query: 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPAFS--DDGLVTYKEINNRIKNY---------G 301
+ L + Y + V + GPA ++G + +I +KNY G
Sbjct: 387 XIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI---VKNYMDAEHSLSMG 443
Query: 302 PNVQVMYNSTYV---VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYW 358
N V+ T + + D V+ K YA + KL G + W D
Sbjct: 444 KNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CG 502
Query: 359 MLSQAAAE 366
+L+ AA E
Sbjct: 503 LLANAARE 510
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 117/308 (37%), Gaps = 47/308 (15%)
Query: 93 LSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKI-ARLYGFQGLDLSWPHANTSWDKYNI 151
SIGG + +Y +S++A NP R+ F+ S + R F +D+ W + D+ NI
Sbjct: 216 FSIGGWSLSSY--FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 152 G---------ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQY-- 200
+L KE R+A+D S+ E++ + A +I Q
Sbjct: 274 SSDXDGENYVLLIKELRSALD-------SRFGYSNRXEISIACSGVXAXLKKSNIDQLVA 326
Query: 201 --LNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEY------GITEWIEEGLSADKM 252
L+ +++M+ ++ +W ++ G LY P E +++ L
Sbjct: 327 NGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPME 386
Query: 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPAFS--DDGLVTYKEINNRIKNY---------G 301
+ L + Y + V + GPA ++G + +I + NY G
Sbjct: 387 XIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI---VXNYMDAEHSLSMG 443
Query: 302 PNVQVMYNSTYV---VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYW 358
N V+ T + + D V+ K YA + KL G + W D
Sbjct: 444 KNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD-CG 502
Query: 359 MLSQAAAE 366
+L+ AA E
Sbjct: 503 LLANAARE 510
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 47/308 (15%)
Query: 93 LSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKI-ARLYGFQGLDLSWPHANTSWDKYNI 151
SIGG + +Y +S++A NP R+ F+ S + R F +D+ W + D+ NI
Sbjct: 216 FSIGGWSLSSY--FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 152 G---------ILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQY-- 200
+L KE R+A+D S+ E++ + A +I Q
Sbjct: 274 SSDXDGENYVLLIKELRSALD-------SRFGYSNRXEISIACSGVXAXLKXSNIDQLVA 326
Query: 201 --LNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEY------GITEWIEEGLSADKM 252
L+ +++M+ ++ +W ++ G LY P E +++ L
Sbjct: 327 NGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPME 386
Query: 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPAFS--DDGLVTYKEINNRIKNY---------G 301
+ L + Y + V + GPA ++G + +I + NY G
Sbjct: 387 KIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI---VXNYMDAEHSLSMG 443
Query: 302 PNVQVMYNSTYV---VNYCSIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYW 358
N V+ T + + D V K YA + KL G + W D
Sbjct: 444 KNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQD-CG 502
Query: 359 MLSQAAAE 366
+L+ AA E
Sbjct: 503 LLANAARE 510
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPVYK 464
L+ +SL +++VA+D FS +N LG GG+G VYK
Sbjct: 25 LKRFSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPVYK 464
L+ +SL +++VA+D F +N LG GG+G VYK
Sbjct: 17 LKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
Query: 32 WDSGNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITT 91
W+ + FP + TH+ FA V + L+++P K+ + + N I
Sbjct: 15 WEFESLFPT--IEWKYLTHINASFARVKADG-TLNINPV-RKRIESVRETAHKHNVKILI 70
Query: 92 LLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNI 151
L+ N+P +++ ++P +RK I I + Y G D+ + + +WDK
Sbjct: 71 SLA---KNSP--GEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYD-NWDKNFP 124
Query: 152 GILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEY 211
+L + + L N + + + + Y QY +++++ + Y
Sbjct: 125 SLLV--FARGLYLAKEKNXLXTCAVNSRWLNYGT----------EWEQYFDYINLXS--Y 170
Query: 212 SNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEE-GLSADKMVLCLPFYGYAW 263
+T+ Q A YD + V + +Y W E+ S K+V LPFYGY+W
Sbjct: 171 DRGAFTD-KPVQHASYD-DFVKDLKY----WNEQCRASKSKIVGGLPFYGYSW 217
>pdb|1OM0|A Chain A, Crystal Structure Of Xylanase Inhibitor Protein (Xip-I)
From Wheat
pdb|1TA3|A Chain A, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
pdb|1TE1|A Chain A, Crystal Structure Of Family 11 Xylanase In Complex With
Inhibitor (xip-i)
Length = 274
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 72/191 (37%), Gaps = 34/191 (17%)
Query: 43 VNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPN 102
+S ++T + F DV + + L S S DI ++ + LSIGG
Sbjct: 25 CDSGMYTMVTMSFLDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGG----- 79
Query: 103 YSTYSSMASNPSS--------RKSFIDSSIKIARLYG---FQGLDLSWPHANTSWDKYNI 151
Y T S+ SN S+ F S + R +G G+DL H T D+Y++
Sbjct: 80 YGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHG-TPADRYDV 138
Query: 152 GILFKEWRAAVDLEARN--NSSKSQLILTAEV--AYSPHSTAAAYTVDSIRQYLNWVHVM 207
A++L N L LTA V Y P + I + VHV
Sbjct: 139 --------LALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFER---VHVR 187
Query: 208 TTEYSNPMWTN 218
T Y + W N
Sbjct: 188 T--YESDKWCN 196
>pdb|3TLY|A Chain A, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
pdb|3TLY|B Chain B, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
Length = 371
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGL 160
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGL 160
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 32/193 (16%)
Query: 80 DIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSW 139
+I K+ + L+++GG + + + S F++ I++ YGF GLD+
Sbjct: 71 EISKLNAEGKSVLIALGGAD-------AHIELKKSQESDFVNEIIRLVDTYGFDGLDIDL 123
Query: 140 PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQ 199
A + + + + V R + + + E Y S A ++++
Sbjct: 124 EQA--AIEAADNQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSGKYAPYINNLDS 181
Query: 200 YLNWVHVMTTEYSNPMWTNFTGAQAALYDPN---SVSNTE------YGITEWIEEG---- 246
Y +++ NP + N G D N S SN E YG+T+ + G
Sbjct: 182 YYDFI--------NPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGTDGF 233
Query: 247 --LSADKMVLCLP 257
+ A K V+ LP
Sbjct: 234 IKIPASKFVIGLP 246
>pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1KYI|G Chain G, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1OFH|G Chain G, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|H Chain H, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|I Chain I, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|L Chain L, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|M Chain M, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|N Chain N, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|G Chain G, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|H Chain H, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|I Chain I, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|L Chain L, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|M Chain M, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|N Chain N, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 174
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 64 ELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPS-SRKSFIDS 122
E L +DEK+ T I + P +L+IG G N S ++ N S ++
Sbjct: 92 EAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEK 151
Query: 123 SIKIA 127
S++IA
Sbjct: 152 SLRIA 156
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 22 GAQTLIRAGYW---DSGNGF-PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSN 77
G++ L+ GYW D+G G + DV S + + F + + SP
Sbjct: 5 GSKLLV--GYWHNFDNGTGIIKLKDV-SPKWDVINVSFGETGGDRSTVEFSPVYGTDADF 61
Query: 78 FTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
+DI +K+ +LSIGG N + + +++ FI+S + YGF G+D+
Sbjct: 62 KSDISYLKSKGKKVVLSIGGQNG------VVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
Query: 138 S 138
+
Sbjct: 116 A 116
>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase
H From E. Coli
pdb|1AA6|A Chain A, Reduced Form Of Formate Dehydrogenase H From E. Coli
pdb|1FDI|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Complexed With The Inhibitor Nitrite
pdb|1FDO|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Length = 715
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 307 MYNSTYVVNYCSIG-KIWFGFDDVEAVRVKVSYAKEKK----LRGYYGWEVSYDHYWMLS 361
M V YC+ G KI D+ + VR + + K + L+GYYGW+ D +
Sbjct: 1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTP 60
Query: 362 QAAAEEDNKNRQNKL 376
+ + R KL
Sbjct: 61 RLKTPMIRRQRGGKL 75
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 448 FSIENKLGEGGYGPVYKVMYR 468
F + KLGEG YG VYK +++
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHK 51
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 22 GAQTLIRAGYW---DSGNGF-PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSN 77
G++ L+ GYW D+G G + DV S + + F + + SP
Sbjct: 5 GSKLLV--GYWHNFDNGTGIIKLKDV-SPKWDVINVSFGETGGDRSTVEFSPVYGTDADF 61
Query: 78 FTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
+DI +K+ +LSIGG N + + +++ FI+S + YGF G+D+
Sbjct: 62 KSDISYLKSKGKKVVLSIGGQNG------VVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 22 GAQTLIRAGYW---DSGNGF-PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSN 77
G++ L+ GYW D+G G + DV S + + F + + SP
Sbjct: 5 GSKLLV--GYWHNFDNGTGIIKLKDV-SPKWDVINVSFGETGGDRSTVEFSPVYGTDADF 61
Query: 78 FTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
+DI +K+ +LSIGG N + + +++ FI+S + YGF G+D+
Sbjct: 62 KSDISYLKSKGKKVVLSIGGQNG------VVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 22 GAQTLIRAGYW---DSGNGF-PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSN 77
G++ L+ GYW D+G G + DV S + + F + + SP
Sbjct: 5 GSKLLV--GYWHNFDNGTGIIKLKDV-SPKWDVINVSFGETGGDRSTVEFSPVYGTDADF 61
Query: 78 FTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
+DI +K+ +LSIGG N + + +++ FI+S + YGF G+D+
Sbjct: 62 KSDISYLKSKGKKVVLSIGGQNG------VVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 26 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 55
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 26 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 55
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 28 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 57
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 28 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 57
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 28 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 57
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 23 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 52
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 25 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 54
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 28 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 57
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 22 GAQTLIRAGYW---DSGNGF-PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSN 77
G++ L+ GYW D+G G + DV S + + F + + SP
Sbjct: 5 GSKLLV--GYWHNFDNGTGIIKLKDV-SPKWDVINVSFGETGGDRSTVEFSPVYGTDADF 61
Query: 78 FTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
+DI +K+ +LSIGG N + + +++ FI+S + YGF G+D+
Sbjct: 62 KSDISYLKSKGKKVVLSIGGQNG------VVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 21 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 50
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 21 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 50
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT + S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIXSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT + S GG+N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIXSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 LREYSLADIEVATDGFSIENKLGEGGYGPV 462
L+E ++E A DG NKL GGYG V
Sbjct: 24 LKELGFNNVEEAEDGVDALNKLQAGGYGFV 53
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 63 YELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDS 122
Y+ LSP ++K+ S TD++ I NP + T+ P ++ + N + FI
Sbjct: 639 YDAKLSPDEKKRNSFGTDLIFIFNPQVDTVY-----KTPLAGLFNDIEHNHCIEREFIPE 693
Query: 123 SIK-IARLYGF 132
S++ + L+G
Sbjct: 694 SMENVKFLFGL 704
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 84 IKNPSITTLLSIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
I+NP+++ ++S GG N N Y Y + +NP + D++ + +Y G+
Sbjct: 75 IRNPNVSCIMSTIGGMNSNSLLPYIDYDAFQNNPKIMIGYADATALLLGIYAKTGI 130
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 117 KSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLI 176
K F D+ K+A + + W A + +L + A DLE + N ++++ +
Sbjct: 51 KKFRDALFKLAPMNRYSAQKQFWKAAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKL 110
Query: 177 LTAEVAY 183
L + Y
Sbjct: 111 LGTVIQY 117
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 30 GYWDS-GNGFPV---SDVNSALFTHLMCGFADVNST----SYELSLSPSDEKQFSNFTDI 81
GYW + NG V SDV SA + + FAD +T ++ L + F
Sbjct: 9 GYWQNFNNGATVQKISDVPSA-YDIIAVAFADATTTPGAVTFNLDSAGLGGYTVDQFKAD 67
Query: 82 VKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
V+ K + ++ GG S SS +S +F +S + R YGF G+D+
Sbjct: 68 VRAKQAAGKKVIISVGGEKGTVSVNSS-----ASATNFANSVYSVXREYGFDGVDI 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,552,470
Number of Sequences: 62578
Number of extensions: 609990
Number of successful extensions: 1771
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1523
Number of HSP's gapped (non-prelim): 160
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)