Query 012216
Match_columns 468
No_of_seqs 382 out of 2850
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 00:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 2E-64 4.3E-69 479.3 30.8 291 26-360 3-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 5.4E-63 1.2E-67 485.8 31.8 321 28-361 1-347 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 6.3E-61 1.4E-65 473.5 32.2 325 27-361 1-398 (413)
4 KOG2806 Chitinase [Carbohydrat 100.0 6.9E-60 1.5E-64 467.0 32.2 332 23-360 55-402 (432)
5 smart00636 Glyco_18 Glycosyl h 100.0 6.8E-60 1.5E-64 459.6 31.6 316 27-355 1-334 (334)
6 cd02878 GH18_zymocin_alpha Zym 100.0 5.7E-59 1.2E-63 450.8 29.1 308 27-355 1-345 (345)
7 cd06548 GH18_chitinase The GH1 100.0 1.9E-58 4E-63 444.7 29.7 283 28-355 1-322 (322)
8 COG3325 ChiA Chitinase [Carboh 100.0 3.1E-58 6.8E-63 429.3 26.6 331 23-362 35-430 (441)
9 PF00704 Glyco_hydro_18: Glyco 100.0 1.1E-53 2.5E-58 418.6 29.5 320 26-355 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 3E-53 6.5E-58 408.1 24.3 291 27-357 4-312 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 5.1E-51 1.1E-55 395.6 30.5 298 24-364 34-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 3E-49 6.6E-54 380.3 25.3 291 27-357 3-307 (313)
13 cd06549 GH18_trifunctional GH1 100.0 2.3E-45 5.1E-50 348.9 22.8 287 28-357 2-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 5.2E-45 1.1E-49 339.4 24.3 240 28-356 1-243 (253)
15 cd00598 GH18_chitinase-like Th 100.0 8.2E-35 1.8E-39 264.8 20.7 172 28-210 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 1.7E-33 3.8E-38 262.9 16.8 241 88-359 160-414 (423)
17 cd06544 GH18_narbonin Narbonin 100.0 4.3E-31 9.4E-36 242.3 18.1 203 36-263 11-221 (253)
18 cd06546 GH18_CTS3_chitinase GH 100.0 2.1E-30 4.5E-35 239.6 20.5 195 27-258 1-217 (256)
19 cd02871 GH18_chitinase_D-like 100.0 3.4E-28 7.4E-33 232.6 24.5 210 26-259 1-248 (312)
20 KOG2091 Predicted member of gl 99.9 1.3E-26 2.9E-31 206.5 16.0 292 27-356 80-385 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 2.5E-22 5.3E-27 187.8 17.6 196 26-261 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 1.2E-21 2.6E-26 182.4 20.5 200 28-259 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.8 1.5E-19 3.3E-24 169.5 14.1 150 45-214 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.7 2.6E-16 5.7E-21 136.9 14.1 215 23-258 23-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.4 3.3E-11 7.2E-16 111.1 18.3 226 1-259 1-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.6 6.5E-07 1.4E-11 86.1 12.4 156 78-263 51-215 (339)
27 KOG1187 Serine/threonine prote 98.2 9.5E-07 2.1E-11 86.5 2.9 37 432-468 61-97 (361)
28 PF02638 DUF187: Glycosyl hydr 98.1 2.2E-05 4.9E-10 75.0 11.7 130 111-261 134-299 (311)
29 PF03644 Glyco_hydro_85: Glyco 98.0 1.4E-05 3E-10 76.1 7.8 175 46-262 27-209 (311)
30 PF11340 DUF3142: Protein of u 97.4 0.0019 4.1E-08 55.3 10.8 85 112-209 22-107 (181)
31 PF13200 DUF4015: Putative gly 97.4 0.015 3.2E-07 55.3 17.0 100 117-226 123-241 (316)
32 PLN00113 leucine-rich repeat r 96.5 0.0042 9.1E-08 69.7 6.6 30 435-467 682-711 (968)
33 KOG2331 Predicted glycosylhydr 96.4 0.017 3.8E-07 55.4 8.7 84 80-166 118-202 (526)
34 KOG3653 Transforming growth fa 96.1 0.01 2.3E-07 58.1 5.7 17 452-468 216-232 (534)
35 KOG1025 Epidermal growth facto 93.3 0.034 7.3E-07 58.4 1.1 17 450-466 700-716 (1177)
36 COG1306 Uncharacterized conser 93.1 0.62 1.3E-05 43.1 8.6 88 115-213 193-300 (400)
37 PF14883 GHL13: Hypothetical g 92.5 7.4 0.00016 36.3 14.8 195 47-264 30-266 (294)
38 PRK12568 glycogen branching en 91.7 3.5 7.5E-05 44.2 13.4 95 71-167 317-454 (730)
39 TIGR01370 cysRS possible cyste 91.2 1.3 2.8E-05 42.4 8.9 55 112-167 142-205 (315)
40 COG1649 Uncharacterized protei 91.1 0.52 1.1E-05 46.5 6.3 93 112-210 180-308 (418)
41 PLN02960 alpha-amylase 90.9 4.2 9E-05 44.1 13.1 94 71-167 464-603 (897)
42 PLN03224 probable serine/threo 90.7 0.095 2.1E-06 53.8 0.8 24 444-467 143-166 (507)
43 TIGR02103 pullul_strch alpha-1 90.6 2.2 4.8E-05 46.7 11.1 85 73-166 404-517 (898)
44 cd02810 DHOD_DHPD_FMN Dihydroo 90.6 2.9 6.3E-05 39.7 10.9 74 72-162 82-161 (289)
45 KOG0196 Tyrosine kinase, EPH ( 90.1 0.17 3.6E-06 53.1 2.0 18 451-468 634-651 (996)
46 TIGR02104 pulA_typeI pullulana 90.1 3 6.5E-05 44.2 11.4 85 73-166 229-340 (605)
47 PRK12313 glycogen branching en 89.8 3.6 7.7E-05 43.9 11.7 94 71-167 218-354 (633)
48 PF14871 GHL6: Hypothetical gl 89.7 2 4.3E-05 35.4 7.7 65 72-139 43-132 (132)
49 TIGR02402 trehalose_TreZ malto 89.0 3 6.4E-05 43.5 10.2 91 71-166 158-269 (542)
50 TIGR01515 branching_enzym alph 87.9 6.9 0.00015 41.5 12.2 95 71-167 204-341 (613)
51 PRK05402 glycogen branching en 86.7 8.3 0.00018 41.8 12.2 95 71-167 313-450 (726)
52 PRK14705 glycogen branching en 86.3 12 0.00025 42.8 13.2 94 71-166 813-949 (1224)
53 PRK14706 glycogen branching en 86.0 11 0.00023 40.2 12.3 95 71-167 215-350 (639)
54 PLN03225 Serine/threonine-prot 84.0 0.35 7.5E-06 50.7 0.3 24 444-467 130-153 (566)
55 PF15102 TMEM154: TMEM154 prot 83.5 1.6 3.4E-05 36.2 3.7 11 433-443 122-132 (146)
56 PLN03244 alpha-amylase; Provis 82.7 17 0.00037 39.1 11.8 93 71-166 439-577 (872)
57 TIGR02102 pullulan_Gpos pullul 82.6 12 0.00025 42.4 11.2 85 73-166 555-663 (1111)
58 PLN02447 1,4-alpha-glucan-bran 82.4 15 0.00032 39.7 11.5 94 71-167 298-438 (758)
59 cd02930 DCR_FMN 2,4-dienoyl-Co 80.9 28 0.00061 34.1 12.3 88 48-139 47-158 (353)
60 PRK14581 hmsF outer membrane N 80.2 54 0.0012 35.0 14.5 199 46-264 346-614 (672)
61 PF14575 EphA2_TM: Ephrin type 79.7 0.81 1.8E-05 33.5 0.8 16 435-450 56-71 (75)
62 PF13199 Glyco_hydro_66: Glyco 79.1 3.9 8.5E-05 42.4 5.7 53 111-163 238-300 (559)
63 PF04478 Mid2: Mid2 like cell 79.1 0.94 2E-05 37.7 1.0 15 377-391 50-64 (154)
64 KOG0193 Serine/threonine prote 79.0 0.83 1.8E-05 46.7 0.8 25 435-466 388-412 (678)
65 PRK10785 maltodextrin glucosid 78.8 19 0.00041 38.2 10.9 95 71-167 224-365 (598)
66 cd04734 OYE_like_3_FMN Old yel 78.2 45 0.00098 32.5 12.6 89 48-140 47-163 (343)
67 cd04733 OYE_like_2_FMN Old yel 77.0 36 0.00078 33.1 11.6 68 71-141 80-172 (338)
68 cd02801 DUS_like_FMN Dihydrour 76.8 15 0.00033 33.3 8.6 64 82-162 48-122 (231)
69 PRK14582 pgaB outer membrane N 76.1 14 0.0003 39.4 8.8 135 112-264 439-614 (671)
70 PF01102 Glycophorin_A: Glycop 75.5 2.1 4.5E-05 34.5 2.1 14 379-392 67-80 (122)
71 PF14885 GHL15: Hypothetical g 74.2 6 0.00013 29.2 4.1 43 96-139 32-75 (79)
72 KOG1024 Receptor-like protein 73.4 5.6 0.00012 38.8 4.7 22 446-467 284-305 (563)
73 PF14587 Glyco_hydr_30_2: O-Gl 73.3 29 0.00062 34.1 9.5 92 73-168 104-219 (384)
74 PLN02495 oxidoreductase, actin 71.7 35 0.00075 33.8 9.9 57 72-144 97-153 (385)
75 PF02057 Glyco_hydro_59: Glyco 71.6 9.4 0.0002 40.1 6.2 81 77-168 116-203 (669)
76 PLN02877 alpha-amylase/limit d 70.6 29 0.00063 38.6 9.8 83 74-165 467-579 (970)
77 PTZ00284 protein kinase; Provi 69.4 1 2.2E-05 46.1 -1.3 29 439-467 122-150 (467)
78 PRK07259 dihydroorotate dehydr 67.9 40 0.00087 32.1 9.5 58 88-162 91-156 (301)
79 PRK03995 hypothetical protein; 67.8 14 0.00031 34.4 6.0 71 85-158 177-260 (267)
80 KOG2052 Activin A type IB rece 67.5 4.5 9.7E-05 40.0 2.7 16 451-466 216-231 (513)
81 cd04740 DHOD_1B_like Dihydroor 67.4 45 0.00097 31.7 9.7 59 87-162 88-153 (296)
82 PRK03705 glycogen debranching 66.5 24 0.00053 37.7 8.2 66 73-140 242-338 (658)
83 COG4724 Endo-beta-N-acetylgluc 66.2 12 0.00026 36.2 5.2 79 77-161 131-218 (553)
84 KOG0663 Protein kinase PITSLRE 65.5 1.6 3.5E-05 41.5 -0.7 19 448-466 78-96 (419)
85 PTZ00382 Variant-specific surf 64.6 3.8 8.3E-05 31.6 1.4 6 379-384 69-74 (96)
86 TIGR00737 nifR3_yhdG putative 64.5 58 0.0013 31.4 9.9 44 83-143 57-100 (319)
87 TIGR02100 glgX_debranch glycog 64.4 30 0.00066 37.2 8.5 87 72-160 244-365 (688)
88 PRK08318 dihydropyrimidine deh 63.8 56 0.0012 32.9 10.0 66 81-162 92-167 (420)
89 PRK07565 dihydroorotate dehydr 63.8 55 0.0012 31.8 9.6 74 71-162 85-164 (334)
90 cd04747 OYE_like_5_FMN Old yel 63.2 69 0.0015 31.5 10.1 105 71-183 76-220 (361)
91 cd02940 DHPD_FMN Dihydropyrimi 62.7 79 0.0017 30.1 10.3 68 79-162 90-167 (299)
92 cd02803 OYE_like_FMN_family Ol 60.9 24 0.00053 34.0 6.6 46 48-95 47-97 (327)
93 PF07745 Glyco_hydro_53: Glyco 60.6 47 0.001 32.1 8.3 91 71-166 56-167 (332)
94 PRK13523 NADPH dehydrogenase N 59.5 1.7E+02 0.0037 28.5 12.1 90 47-140 50-164 (337)
95 PF02055 Glyco_hydro_30: O-Gly 59.3 39 0.00084 34.8 7.9 131 75-209 155-311 (496)
96 PF01102 Glycophorin_A: Glycop 58.8 9.5 0.00021 30.8 2.7 23 385-407 70-92 (122)
97 TIGR02456 treS_nterm trehalose 58.7 1.2E+02 0.0026 31.7 11.6 55 111-166 171-231 (539)
98 cd02932 OYE_YqiM_FMN Old yello 57.7 32 0.0007 33.4 6.8 47 47-95 46-97 (336)
99 PRK14866 hypothetical protein; 57.5 28 0.00061 35.0 6.3 68 87-158 183-263 (451)
100 KOG0194 Protein tyrosine kinas 57.4 4.7 0.0001 40.8 1.0 16 452-467 163-178 (474)
101 PTZ00036 glycogen synthase kin 57.3 3.5 7.6E-05 41.8 0.0 23 445-467 65-87 (440)
102 cd05106 PTKc_CSF-1R Catalytic 57.2 4.4 9.6E-05 40.0 0.7 19 448-466 40-58 (374)
103 cd06592 GH31_glucosidase_KIAA1 57.1 49 0.0011 31.6 7.8 33 110-142 134-166 (303)
104 PF05454 DAG1: Dystroglycan (D 57.0 3.5 7.7E-05 38.7 0.0 14 151-164 21-34 (290)
105 PF07172 GRP: Glycine rich pro 57.0 4.7 0.0001 31.0 0.7 9 1-9 1-9 (95)
106 KOG1035 eIF-2alpha kinase GCN2 56.1 3.4 7.3E-05 46.0 -0.3 23 444-466 477-499 (1351)
107 PRK09605 bifunctional UGMP fam 55.6 4.2 9.2E-05 42.4 0.3 25 443-467 330-354 (535)
108 cd04738 DHOD_2_like Dihydrooro 55.4 1.1E+02 0.0023 29.7 9.9 66 87-163 127-197 (327)
109 PRK10550 tRNA-dihydrouridine s 54.6 73 0.0016 30.6 8.5 58 88-162 62-130 (312)
110 COG3867 Arabinogalactan endo-1 54.6 2E+02 0.0042 27.3 14.1 23 71-95 102-124 (403)
111 cd05622 STKc_ROCK1 Catalytic d 54.6 3.4 7.4E-05 40.8 -0.6 29 438-466 35-63 (371)
112 KOG0600 Cdc2-related protein k 53.6 3.1 6.7E-05 41.8 -1.0 16 451-466 122-137 (560)
113 PLN02361 alpha-amylase 53.4 1.4E+02 0.0031 29.7 10.6 43 111-161 152-195 (401)
114 cd05621 STKc_ROCK2 Catalytic d 53.3 3.6 7.8E-05 40.6 -0.6 23 444-466 41-63 (370)
115 TIGR00742 yjbN tRNA dihydrouri 52.7 59 0.0013 31.3 7.6 61 85-162 51-122 (318)
116 cd02931 ER_like_FMN Enoate red 52.0 45 0.00098 33.1 6.9 22 72-95 82-103 (382)
117 PF07476 MAAL_C: Methylasparta 51.9 1.1E+02 0.0024 27.6 8.3 87 112-214 87-175 (248)
118 PRK11815 tRNA-dihydrouridine s 51.6 51 0.0011 32.0 7.0 41 86-143 62-102 (333)
119 cd06591 GH31_xylosidase_XylS X 50.2 86 0.0019 30.2 8.4 33 111-143 129-161 (319)
120 PRK09505 malS alpha-amylase; R 49.8 34 0.00075 36.7 5.9 30 111-140 434-463 (683)
121 PRK02506 dihydroorotate dehydr 49.5 1.4E+02 0.0031 28.6 9.6 78 68-162 72-156 (310)
122 PHA03210 serine/threonine kina 49.5 7.4 0.00016 40.2 0.9 22 445-466 147-168 (501)
123 PF10566 Glyco_hydro_97: Glyco 49.2 65 0.0014 30.2 6.9 76 71-162 71-146 (273)
124 COG0296 GlgB 1,4-alpha-glucan 48.6 74 0.0016 33.7 7.9 67 71-139 212-304 (628)
125 PF01120 Alpha_L_fucos: Alpha- 48.6 1.7E+02 0.0038 28.5 10.3 86 71-160 136-234 (346)
126 cd05596 STKc_ROCK Catalytic do 48.6 3.2 6.9E-05 40.9 -1.9 22 445-466 42-63 (370)
127 PF00834 Ribul_P_3_epim: Ribul 48.2 64 0.0014 28.7 6.6 76 106-210 62-137 (201)
128 COG1908 FrhD Coenzyme F420-red 47.9 34 0.00073 27.4 4.1 48 120-168 80-127 (132)
129 KOG0192 Tyrosine kinase specif 47.7 7.4 0.00016 38.2 0.6 16 452-467 47-62 (362)
130 PHA03209 serine/threonine kina 47.4 8.2 0.00018 37.7 0.9 24 444-467 64-87 (357)
131 smart00812 Alpha_L_fucos Alpha 46.8 1.2E+02 0.0026 30.1 8.8 86 71-160 126-221 (384)
132 PRK02412 aroD 3-dehydroquinate 46.8 2.4E+02 0.0052 26.1 11.9 61 73-142 59-120 (253)
133 PF04414 tRNA_deacylase: D-ami 45.9 42 0.00091 30.2 5.0 66 90-158 131-207 (213)
134 cd06589 GH31 The enzymes of gl 45.7 90 0.002 29.1 7.5 53 73-143 66-118 (265)
135 cd04741 DHOD_1A_like Dihydroor 45.6 2.4E+02 0.0053 26.7 10.5 75 71-162 72-156 (294)
136 PF02065 Melibiase: Melibiase; 45.5 99 0.0021 30.8 8.0 70 71-142 102-194 (394)
137 PLN00034 mitogen-activated pro 45.4 8 0.00017 37.7 0.4 16 451-466 79-94 (353)
138 TIGR01093 aroD 3-dehydroquinat 44.6 2.4E+02 0.0053 25.5 13.5 46 251-296 182-227 (228)
139 PF08869 XisI: XisI protein; 43.4 16 0.00034 29.0 1.7 19 238-256 79-97 (111)
140 cd06602 GH31_MGAM_SI_GAA This 42.6 1.3E+02 0.0029 29.2 8.4 34 110-143 134-167 (339)
141 KOG1026 Nerve growth factor re 42.6 21 0.00046 38.2 3.0 17 451-467 491-507 (774)
142 cd04739 DHOD_like Dihydroorota 42.2 2.1E+02 0.0045 27.6 9.6 58 88-162 99-162 (325)
143 cd06600 GH31_MGAM-like This fa 42.1 1.1E+02 0.0023 29.5 7.6 33 111-143 130-162 (317)
144 PRK01060 endonuclease IV; Prov 41.8 57 0.0012 30.5 5.7 47 120-166 14-60 (281)
145 KOG4258 Insulin/growth factor 40.6 14 0.00031 39.5 1.4 16 451-466 999-1014(1025)
146 PF15050 SCIMP: SCIMP protein 40.3 21 0.00046 28.3 1.9 10 436-445 94-103 (133)
147 KOG1095 Protein tyrosine kinas 40.1 13 0.00028 41.3 1.0 17 451-467 697-713 (1025)
148 COG1891 Uncharacterized protei 39.9 2.4E+02 0.0052 24.4 8.2 170 110-344 4-181 (235)
149 KOG1552 Predicted alpha/beta h 39.1 43 0.00094 30.8 4.0 50 203-262 88-138 (258)
150 TIGR01037 pyrD_sub1_fam dihydr 39.1 2.7E+02 0.0058 26.4 9.8 58 88-162 90-156 (300)
151 PTZ00370 STEVOR; Provisional 38.3 31 0.00067 32.2 3.0 6 328-333 223-228 (296)
152 PRK14510 putative bifunctional 38.0 2E+02 0.0043 33.5 10.0 89 71-166 245-366 (1221)
153 PRK09441 cytoplasmic alpha-amy 38.0 77 0.0017 32.5 6.2 46 112-164 207-252 (479)
154 cd02929 TMADH_HD_FMN Trimethyl 37.9 2.3E+02 0.0049 28.0 9.3 92 47-141 51-173 (370)
155 PF07582 AP_endonuc_2_N: AP en 37.7 61 0.0013 22.1 3.6 41 121-162 3-44 (55)
156 cd06599 GH31_glycosidase_Aec37 37.6 1.1E+02 0.0025 29.3 7.0 32 111-142 138-169 (317)
157 KOG0605 NDR and related serine 37.6 16 0.00034 37.2 1.1 21 446-466 141-161 (550)
158 smart00633 Glyco_10 Glycosyl h 37.0 2.8E+02 0.0062 25.5 9.4 74 75-159 105-179 (254)
159 PF04914 DltD_C: DltD C-termin 36.2 1.1E+02 0.0024 25.1 5.6 59 73-137 36-95 (130)
160 TIGR01478 STEVOR variant surfa 36.2 37 0.0008 31.6 3.1 10 122-131 84-93 (295)
161 cd06595 GH31_xylosidase_XylS-l 35.1 1.9E+02 0.0042 27.4 8.1 67 74-142 75-160 (292)
162 KOG4257 Focal adhesion tyrosin 35.0 16 0.00034 38.1 0.7 17 451-467 394-410 (974)
163 PF05984 Cytomega_UL20A: Cytom 34.9 29 0.00063 25.5 1.8 26 1-26 1-26 (100)
164 TIGR03234 OH-pyruv-isom hydrox 34.8 84 0.0018 28.9 5.5 37 120-166 16-52 (254)
165 KOG0986 G protein-coupled rece 34.7 15 0.00032 36.8 0.3 19 446-464 185-203 (591)
166 PRK05286 dihydroorotate dehydr 34.6 3.5E+02 0.0076 26.3 10.0 66 87-163 136-206 (344)
167 cd00019 AP2Ec AP endonuclease 34.4 89 0.0019 29.2 5.7 45 121-165 13-57 (279)
168 PF01207 Dus: Dihydrouridine s 33.9 93 0.002 29.8 5.7 65 82-163 47-122 (309)
169 PHA03212 serine/threonine kina 33.8 17 0.00037 36.1 0.7 21 446-466 92-112 (391)
170 PF04468 PSP1: PSP1 C-terminal 33.7 59 0.0013 24.6 3.4 56 108-163 16-80 (88)
171 PRK08005 epimerase; Validated 33.7 1.7E+02 0.0037 26.3 6.9 76 106-210 63-138 (210)
172 cd06598 GH31_transferase_CtsZ 33.5 1.3E+02 0.0029 28.9 6.7 31 111-142 135-165 (317)
173 PF12768 Rax2: Cortical protei 33.4 98 0.0021 29.2 5.6 13 306-318 181-193 (281)
174 PRK13575 3-dehydroquinate dehy 33.1 3.9E+02 0.0084 24.5 12.8 61 73-141 47-107 (238)
175 PF00724 Oxidored_FMN: NADH:fl 32.5 3.1E+02 0.0066 26.7 9.2 48 47-96 49-101 (341)
176 PF08885 GSCFA: GSCFA family; 32.3 1.2E+02 0.0027 28.0 6.0 56 73-128 152-208 (251)
177 PF00128 Alpha-amylase: Alpha 32.3 1.1E+02 0.0023 28.7 6.0 48 111-166 142-189 (316)
178 PHA03211 serine/threonine kina 31.6 19 0.00042 36.7 0.7 22 446-467 169-190 (461)
179 PF15069 FAM163: FAM163 family 31.6 58 0.0013 27.0 3.2 17 380-396 7-23 (143)
180 PF12876 Cellulase-like: Sugar 31.3 94 0.002 23.3 4.3 72 127-209 2-88 (88)
181 KOG1166 Mitotic checkpoint ser 31.3 16 0.00035 40.4 0.1 22 445-466 697-718 (974)
182 KOG0581 Mitogen-activated prot 31.0 33 0.00071 33.2 2.0 26 435-467 75-100 (364)
183 COG5185 HEC1 Protein involved 30.9 55 0.0012 32.7 3.5 55 107-163 97-151 (622)
184 PTZ00046 rifin; Provisional 30.8 41 0.00088 32.6 2.6 9 382-390 318-326 (358)
185 PF06745 KaiC: KaiC; InterPro 30.8 1.9E+02 0.0042 25.9 7.1 91 113-213 97-189 (226)
186 KOG1151 Tousled-like protein k 30.6 10 0.00022 37.6 -1.4 15 452-466 469-483 (775)
187 COG3410 Uncharacterized conser 30.5 87 0.0019 26.7 4.1 32 111-142 145-176 (191)
188 TIGR00542 hxl6Piso_put hexulos 30.1 1.1E+02 0.0023 28.7 5.4 47 121-167 19-66 (279)
189 PHA03265 envelope glycoprotein 29.6 37 0.00081 32.5 2.1 8 236-243 251-258 (402)
190 PRK08091 ribulose-phosphate 3- 29.6 2.2E+02 0.0048 25.9 7.0 78 106-210 73-150 (228)
191 PF05763 DUF835: Protein of un 29.6 86 0.0019 26.0 4.0 54 111-164 55-109 (136)
192 TIGR01477 RIFIN variant surfac 29.6 44 0.00095 32.3 2.6 8 382-389 313-320 (353)
193 COG0050 TufB GTPases - transla 29.5 1.1E+02 0.0024 29.0 5.1 58 108-165 139-199 (394)
194 cd04735 OYE_like_4_FMN Old yel 29.3 5.5E+02 0.012 25.1 13.1 67 70-140 75-166 (353)
195 PF04478 Mid2: Mid2 like cell 29.0 19 0.00041 30.2 0.1 23 377-399 47-69 (154)
196 PF00150 Cellulase: Cellulase 28.7 4E+02 0.0087 24.4 9.2 89 72-167 61-164 (281)
197 PF07364 DUF1485: Protein of u 28.5 5.2E+02 0.011 24.6 10.2 110 74-206 46-157 (292)
198 PF03302 VSP: Giardia variant- 28.1 40 0.00086 33.7 2.1 7 393-399 384-390 (397)
199 PF14488 DUF4434: Domain of un 27.6 3.9E+02 0.0085 22.9 12.5 110 46-166 32-152 (166)
200 PRK09722 allulose-6-phosphate 27.4 2.2E+02 0.0047 26.0 6.6 77 106-210 64-140 (229)
201 KOG0694 Serine/threonine prote 27.2 24 0.00052 37.0 0.5 23 445-467 367-389 (694)
202 KOG1006 Mitogen-activated prot 26.9 28 0.00061 32.4 0.8 25 435-466 60-84 (361)
203 COG1523 PulA Type II secretory 26.8 2.4E+02 0.0051 30.5 7.6 68 73-142 265-363 (697)
204 PTZ00382 Variant-specific surf 26.7 28 0.00061 26.9 0.6 7 385-391 72-78 (96)
205 PF02896 PEP-utilizers_C: PEP- 26.3 1.3E+02 0.0029 28.5 5.2 89 116-212 119-209 (293)
206 PF06365 CD34_antigen: CD34/Po 25.9 72 0.0016 28.3 3.1 9 290-298 22-30 (202)
207 PF12138 Spherulin4: Spherulat 25.9 5.4E+02 0.012 23.8 9.9 75 71-164 51-134 (253)
208 KOG3111 D-ribulose-5-phosphate 25.7 2.8E+02 0.0061 24.5 6.5 75 107-210 70-144 (224)
209 TIGR01233 lacG 6-phospho-beta- 25.4 1.7E+02 0.0037 30.0 6.2 80 51-137 72-153 (467)
210 PLN02711 Probable galactinol-- 25.2 4.4E+02 0.0094 28.7 9.0 94 73-166 305-435 (777)
211 cd07321 Extradiol_Dioxygenase_ 25.0 61 0.0013 23.8 2.2 30 105-134 8-37 (77)
212 TIGR01769 GGGP geranylgeranylg 24.9 2.5E+02 0.0055 25.0 6.5 73 111-209 5-78 (205)
213 PF02402 Lysis_col: Lysis prot 24.9 37 0.00081 21.7 0.8 20 1-21 1-20 (46)
214 TIGR02631 xylA_Arthro xylose i 24.7 2.3E+02 0.005 28.1 6.8 45 122-167 36-82 (382)
215 COG0763 LpxB Lipid A disacchar 24.6 2.9E+02 0.0062 27.3 7.1 113 74-207 16-143 (381)
216 PF14606 Lipase_GDSL_3: GDSL-l 24.6 3.8E+02 0.0083 23.3 7.3 65 71-137 76-141 (178)
217 cd06594 GH31_glucosidase_YihQ 24.4 2.2E+02 0.0047 27.4 6.4 32 111-142 136-167 (317)
218 cd06593 GH31_xylosidase_YicI Y 24.3 2.6E+02 0.0056 26.6 7.0 30 111-141 130-159 (308)
219 KOG4236 Serine/threonine prote 24.3 29 0.00063 35.5 0.4 18 448-466 567-584 (888)
220 TIGR00736 nifR3_rel_arch TIM-b 24.0 4.9E+02 0.011 23.8 8.2 88 88-206 67-167 (231)
221 PRK10558 alpha-dehydro-beta-de 23.9 1.4E+02 0.003 27.8 4.8 35 123-159 32-66 (256)
222 TIGR01036 pyrD_sub2 dihydrooro 23.9 6.7E+02 0.015 24.3 9.9 77 76-163 122-203 (335)
223 PLN02784 alpha-amylase 23.7 3.7E+02 0.0081 29.8 8.4 23 71-95 566-588 (894)
224 PRK08255 salicylyl-CoA 5-hydro 23.6 3.3E+02 0.0072 29.9 8.4 86 115-207 549-658 (765)
225 cd02911 arch_FMN Archeal FMN-b 23.6 5.5E+02 0.012 23.4 8.6 55 88-160 72-137 (233)
226 PRK10128 2-keto-3-deoxy-L-rham 23.3 1.5E+02 0.0032 27.8 4.9 35 123-159 31-65 (267)
227 PF09010 AsiA: Anti-Sigma Fact 23.2 70 0.0015 24.1 2.1 31 120-159 11-41 (91)
228 COG1080 PtsA Phosphoenolpyruva 22.7 5.9E+02 0.013 26.7 9.2 136 71-212 311-458 (574)
229 cd08578 GDPD_NUC-2_fungi Putat 22.4 3E+02 0.0066 26.2 6.9 32 111-142 222-253 (300)
230 PRK08745 ribulose-phosphate 3- 22.4 3.3E+02 0.0071 24.7 6.8 65 125-211 79-143 (223)
231 COG0036 Rpe Pentose-5-phosphat 21.9 4.1E+02 0.0089 24.0 7.1 76 106-210 66-141 (220)
232 COG2342 Predicted extracellula 21.9 2.8E+02 0.006 26.1 6.1 49 118-166 126-184 (300)
233 COG1902 NemA NADH:flavin oxido 21.8 7.8E+02 0.017 24.2 13.1 23 72-96 82-104 (363)
234 PHA03207 serine/threonine kina 21.8 36 0.00079 33.7 0.6 20 447-466 93-112 (392)
235 PF08194 DIM: DIM protein; In 21.7 1.4E+02 0.003 18.4 2.8 6 1-6 1-6 (36)
236 PRK12677 xylose isomerase; Pro 21.3 2.8E+02 0.0061 27.5 6.7 46 120-166 33-80 (384)
237 cd01841 NnaC_like NnaC (CMP-Ne 21.2 5E+02 0.011 21.8 8.1 64 71-138 73-137 (174)
238 PLN02334 ribulose-phosphate 3- 21.1 3.9E+02 0.0086 24.1 7.2 69 122-210 79-149 (229)
239 TIGR03239 GarL 2-dehydro-3-deo 21.0 1.8E+02 0.0039 26.9 4.9 35 123-159 25-59 (249)
240 PF02684 LpxB: Lipid-A-disacch 20.9 4.5E+02 0.0097 26.0 7.9 112 74-207 13-140 (373)
241 PRK08883 ribulose-phosphate 3- 20.5 3.6E+02 0.0079 24.3 6.7 76 106-210 63-138 (220)
242 PF15345 TMEM51: Transmembrane 20.4 1.2E+02 0.0027 27.4 3.5 7 437-443 126-132 (233)
243 cd01828 sialate_O-acetylestera 20.3 4.9E+02 0.011 21.7 7.4 59 73-137 72-130 (169)
244 KOG3035 Isoamyl acetate-hydrol 20.3 6E+02 0.013 23.0 7.6 67 73-140 100-173 (245)
245 PF03328 HpcH_HpaI: HpcH/HpaI 20.1 4.3E+02 0.0092 23.7 7.2 78 123-206 13-90 (221)
246 PLN02411 12-oxophytodienoate r 20.1 4.9E+02 0.011 25.9 8.1 44 50-95 59-107 (391)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2e-64 Score=479.34 Aligned_cols=291 Identities=50% Similarity=0.928 Sum_probs=263.0
Q ss_pred cEEEEEecCCC-CcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCc
Q 012216 26 LIRAGYWDSGN-GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYS 104 (468)
Q Consensus 26 ~~~~~Y~~~~~-~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~ 104 (468)
-+++|||++|. .|.+++++.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+|+|||||+. ++.
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s~ 81 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DSS 81 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCc
Confidence 47899999976 8999999999999999999999998778887776777788888889999999999999999986 568
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecC
Q 012216 105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYS 184 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~ 184 (468)
.|+.+++++++|++|++++++++++|+|||||||||+|..++|+++|+.||++||++|+++.+. .++++++||+++|+.
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~-~~~~~~~ls~av~~~ 160 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARS-SGRPPLLLTAAVYFS 160 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhc-cCCCcEEEEeecccc
Confidence 8999999999999999999999999999999999999987789999999999999999976544 344569999999876
Q ss_pred ccc----ccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeecccee
Q 012216 185 PHS----TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPFYG 260 (468)
Q Consensus 185 ~~~----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG 260 (468)
+.. ....|+++++.+++||||||+||+||+|....++|+|||+.+....+++.+|+.|++.|+|++||+||+|+||
T Consensus 161 ~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YG 240 (299)
T cd02879 161 PILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYG 240 (299)
T ss_pred hhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccc
Confidence 654 3445899999999999999999999998777789999999777678999999999999999999999999999
Q ss_pred eeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEeCCeEEEEeChHHHHHHHHHHh
Q 012216 261 YAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAK 340 (468)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~yd~~~S~~~k~~~~~ 340 (468)
|.|++ ||+.++++|.+.+.+||+|||++|++.|++|++
T Consensus 241 r~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~ 278 (299)
T cd02879 241 RAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK 278 (299)
T ss_pred ccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH
Confidence 99952 777788899998899999999999999999999
Q ss_pred hcCcceeeeeeccCCchhhh
Q 012216 341 EKKLRGYYGWEVSYDHYWML 360 (468)
Q Consensus 341 ~~~l~G~~~w~~~~d~~~~~ 360 (468)
+++|+|+++|++++||...+
T Consensus 279 ~~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 279 QKGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred hCCCCeEEEEEeecCCcccc
Confidence 99999999999999986543
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=5.4e-63 Score=485.80 Aligned_cols=321 Identities=35% Similarity=0.631 Sum_probs=280.8
Q ss_pred EEEEecCCC-------CcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCc----cHHHHHHHHHHHHhhCCCcEEEEEEc
Q 012216 28 RAGYWDSGN-------GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPS----DEKQFSNFTDIVKIKNPSITTLLSIG 96 (468)
Q Consensus 28 ~~~Y~~~~~-------~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~~~~kvllsiG 96 (468)
++|||++|. .|.++++|.++||||+|+|+.+++++ .+...+. ....+..+. .+|+++|++||++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEc
Confidence 589999842 57789999999999999999999986 4333332 345566665 4899999999999999
Q ss_pred CCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC----CcchhhHHHHHHHHHHHHHHHhhccCCC
Q 012216 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----SWDKYNIGILFKEWRAAVDLEARNNSSK 172 (468)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~----~~~~~~~~~~l~~lr~~l~~~~~~~~~~ 172 (468)
||+. ++..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|+++++
T Consensus 79 G~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~----- 152 (362)
T cd02872 79 GWNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAP----- 152 (362)
T ss_pred CCCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCc-----
Confidence 9986 4568999999999999999999999999999999999999974 47889999999999999997642
Q ss_pred cceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCC------CCCcHHHHHHHHHHCC
Q 012216 173 SQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPN------SVSNTEYGITEWIEEG 246 (468)
Q Consensus 173 ~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~------~~~~~~~~v~~~~~~g 246 (468)
+++||+++|+.+......||+++|.+++|+|+||+||+|++| ...++++|||+... ...+++.+|++|++.|
T Consensus 153 -~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~g 230 (362)
T cd02872 153 -RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKG 230 (362)
T ss_pred -CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcC
Confidence 389999999877655556999999999999999999999987 56799999998532 2357999999999999
Q ss_pred CCcCceeeeccceeeeeeecCCCCCCCccccCCCC-----CCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEeCC
Q 012216 247 LSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPA-----FSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGK 321 (468)
Q Consensus 247 ~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~ 321 (468)
+|++||+||||+||+.|++.++.++++++|+.+++ +...|.++|.|||+.+ ..+ +...||+.+++||++.++
T Consensus 231 vp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~ 307 (362)
T cd02872 231 APPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGN 307 (362)
T ss_pred CCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECC
Confidence 99999999999999999999888888888887654 3357899999999988 667 899999999999999999
Q ss_pred eEEEEeChHHHHHHHHHHhhcCcceeeeeeccCCchhhhh
Q 012216 322 IWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLS 361 (468)
Q Consensus 322 ~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d~~~~~~ 361 (468)
+||+|||++|++.|++++++++|+|+++|++++||..+.|
T Consensus 308 ~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~c 347 (362)
T cd02872 308 QWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTC 347 (362)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCcc
Confidence 9999999999999999999999999999999999987765
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=6.3e-61 Score=473.49 Aligned_cols=325 Identities=27% Similarity=0.495 Sum_probs=264.1
Q ss_pred EEEEEecCC-------CCcCCCCCCCCC--CcEEEEeeEEeeCCCceeecCCc----cHHHHHHHHHHHHhhCCCcEEEE
Q 012216 27 IRAGYWDSG-------NGFPVSDVNSAL--FTHLMCGFADVNSTSYELSLSPS----DEKQFSNFTDIVKIKNPSITTLL 93 (468)
Q Consensus 27 ~~~~Y~~~~-------~~~~~~~~~~~~--~thii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~~~~kvll 93 (468)
+++|||+.| ..|.+++||..+ ||||+|+|+.++++++.+...+. ....+..+.. +|++||++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITS-LKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHH-HHhhCCCCeEEE
Confidence 368999883 256789999865 99999999999998777765443 2245666654 899999999999
Q ss_pred EEcCCCCCC----CcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-------------------------
Q 012216 94 SIGGGNNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT------------------------- 144 (468)
Q Consensus 94 siGg~~~~~----~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~------------------------- 144 (468)
|||||+.++ +..|+.+++++++|++||+++++++++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999998521 357999999999999999999999999999999999999963
Q ss_pred -----CcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCC-
Q 012216 145 -----SWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTN- 218 (468)
Q Consensus 145 -----~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~- 218 (468)
++|+++|+.||++||++|++.+ ++||+++++.... ...||+++|.+++||||||+||+|++|+..
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~--------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~ 230 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG--------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPE 230 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC--------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCC
Confidence 3578999999999999998643 6788887643221 224899999999999999999999998653
Q ss_pred CCCCCCCCCCCC---CCCcHHHHHHHHHHCCCCcCceeeeccceeeeeeecCCCC-CCCc--cccC-----CCCCCCCCc
Q 012216 219 FTGAQAALYDPN---SVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPED-NGIG--AAAT-----GPAFSDDGL 287 (468)
Q Consensus 219 ~~~~~apl~~~~---~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~-~~~~--~~~~-----~~~~~~~g~ 287 (468)
.++++|||+... ...+++.+|+.|++.|+|++||+||||+|||.|+++++.. .+.+ +++. |+.+.++|.
T Consensus 231 ~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~ 310 (413)
T cd02873 231 EADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGL 310 (413)
T ss_pred ccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCcc
Confidence 689999998543 2468999999999999999999999999999999886532 2211 2333 334456789
Q ss_pred ccHHHHHHHhhcCC------CCeEEEEeccee-eeeEEe-------CCeEEEEeChHHHHHHHHHHhhcCcceeeeeecc
Q 012216 288 VTYKEINNRIKNYG------PNVQVMYNSTYV-VNYCSI-------GKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVS 353 (468)
Q Consensus 288 ~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~ 353 (468)
++|.|||+.+...+ ..++..||++.+ .+|.|. .++||+|||++|++.|++|+++++|+|+++|+++
T Consensus 311 l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~ 390 (413)
T cd02873 311 LSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLS 390 (413)
T ss_pred ccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeee
Confidence 99999999776421 115567888776 589882 2579999999999999999999999999999999
Q ss_pred CCchhhhh
Q 012216 354 YDHYWMLS 361 (468)
Q Consensus 354 ~d~~~~~~ 361 (468)
+||..+.|
T Consensus 391 ~DD~~g~c 398 (413)
T cd02873 391 LDDFRGQC 398 (413)
T ss_pred cCcCCCCc
Confidence 99987765
No 4
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-60 Score=466.98 Aligned_cols=332 Identities=27% Similarity=0.487 Sum_probs=286.9
Q ss_pred CCCcEEEEEecCCC-CcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCC
Q 012216 23 AQTLIRAGYWDSGN-GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNP 101 (468)
Q Consensus 23 ~~~~~~~~Y~~~~~-~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~ 101 (468)
.+..+++|||..+. ...+.+++..+|||++|+|+.++.++..+...+.....+..+.+.+|.+||++|+|+|||||.+
T Consensus 55 ~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~- 133 (432)
T KOG2806|consen 55 VCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG- 133 (432)
T ss_pred cccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC-
Confidence 35678899998877 8899999999999999999999999855555554566778888889999999999999999943
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC-CCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEE
Q 012216 102 NYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN-TSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAE 180 (468)
Q Consensus 102 ~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~-~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a 180 (468)
++..|+.+++|++.|+.||+++++++++|+|||||||||+|. .+.|+.+|..|++|||++|.++.++ ..++..+|+.+
T Consensus 134 ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~-~~~~~~~l~~~ 212 (432)
T KOG2806|consen 134 NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLK-SPDTAKVLEAV 212 (432)
T ss_pred CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhc-cCCccceeeec
Confidence 588999999999999999999999999999999999999996 5589999999999999999998876 44444456665
Q ss_pred eecCcc-cccccCCHHHHhccccEEeeccccccCCCCCC-CCCCCCCCCCCC----CCCcHHHHHHHHHHCCCCcCceee
Q 012216 181 VAYSPH-STAAAYTVDSIRQYLNWVHVMTTEYSNPMWTN-FTGAQAALYDPN----SVSNTEYGITEWIEEGLSADKMVL 254 (468)
Q Consensus 181 ~~~~~~-~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~-~~~~~apl~~~~----~~~~~~~~v~~~~~~g~~~~Ki~l 254 (468)
+...+. ....+||+++|.+++||||||+|||+|+|+.. .+||+||||.+. ...+++..+++|++.|.|++|++|
T Consensus 213 v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~ 292 (432)
T KOG2806|consen 213 VADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVL 292 (432)
T ss_pred cccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEE
Confidence 554443 56677999999999999999999999998753 899999999653 346999999999999999999999
Q ss_pred eccceeeeeeecCCCCCCCccccCCCC------CCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEe--CCeEEEE
Q 012216 255 CLPFYGYAWTLVKPEDNGIGAAATGPA------FSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSI--GKIWFGF 326 (468)
Q Consensus 255 glp~yG~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~y 326 (468)
|+|+||+.|++++...+ ++.++.+++ ...+|.++|.|||+...+.+ ...||+.+++||+|. +++||+|
T Consensus 293 gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvty 368 (432)
T KOG2806|consen 293 ALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTY 368 (432)
T ss_pred EEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEec
Confidence 99999999999987665 554444433 23578999999999655443 578999999999998 9999999
Q ss_pred eChHHHHHHHHHHhhcCcceeeeeeccCCchhhh
Q 012216 327 DDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWML 360 (468)
Q Consensus 327 d~~~S~~~k~~~~~~~~l~G~~~w~~~~d~~~~~ 360 (468)
||++|++.|+.|+++.+|+|+++|.+++||..+.
T Consensus 369 en~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~ 402 (432)
T KOG2806|consen 369 ENERSIHIKADYAKDEGLGGVAIWNIDQDDESGS 402 (432)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc
Confidence 9999999999999999999999999999998664
No 5
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=6.8e-60 Score=459.59 Aligned_cols=316 Identities=34% Similarity=0.641 Sum_probs=273.9
Q ss_pred EEEEEecCCC----CcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccH--HHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 012216 27 IRAGYWDSGN----GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDE--KQFSNFTDIVKIKNPSITTLLSIGGGNN 100 (468)
Q Consensus 27 ~~~~Y~~~~~----~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~kvllsiGg~~~ 100 (468)
+++|||++|. .|.+++++.++||||+|+|+.+++++ ++.+.+... ..+..+. .+|+++|++|+|++||||+.
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 4799999965 37899999999999999999999965 666654433 3455555 48888999999999999986
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-cchhhHHHHHHHHHHHHHHHhhccCCCcceEEEE
Q 012216 101 PNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS-WDKYNIGILFKEWRAAVDLEARNNSSKSQLILTA 179 (468)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~-~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~ 179 (468)
+..|+.++.|++.|++|+++|++++++|+|||||||||+|... .++++|+.|+++||++|++... . .++++||+
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~~lsi 153 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA--E-GKGYLLTI 153 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc--c-CCceEEEE
Confidence 6889999999999999999999999999999999999999753 5788999999999999987621 1 34599999
Q ss_pred EeecCcccccccCC-HHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCC---CCcHHHHHHHHHHCCCCcCceeee
Q 012216 180 EVAYSPHSTAAAYT-VDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNS---VSNTEYGITEWIEEGLSADKMVLC 255 (468)
Q Consensus 180 a~~~~~~~~~~~~~-~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~---~~~~~~~v~~~~~~g~~~~Ki~lg 255 (468)
++|+.+......|+ ++++.+++|+|+||+||+|++| +..++|+|||+.... ..+++.+++.|++.|+|++||+||
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~-~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAW-SNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCC-CCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 99987665544588 5999999999999999999987 458999999985332 358999999999999999999999
Q ss_pred ccceeeeeeecCCCCCCCccccCCCCC-----CCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEe-C-CeEEEEeC
Q 012216 256 LPFYGYAWTLVKPEDNGIGAAATGPAF-----SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSI-G-KIWFGFDD 328 (468)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~yd~ 328 (468)
||+||+.|++.++..+++++|..|++. ..++.++|.|||+.+ + +...||+.+++||.|. + ++||+|||
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999888888888877643 357889999999875 5 8899999999999995 3 59999999
Q ss_pred hHHHHHHHHHHhhcCcceeeeeeccCC
Q 012216 329 VEAVRVKVSYAKEKKLRGYYGWEVSYD 355 (468)
Q Consensus 329 ~~S~~~k~~~~~~~~l~G~~~w~~~~d 355 (468)
++|++.|++++++++|+|+++|++++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999876
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=5.7e-59 Score=450.82 Aligned_cols=308 Identities=17% Similarity=0.316 Sum_probs=250.5
Q ss_pred EEEEEecCC------CCcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 012216 27 IRAGYWDSG------NGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNN 100 (468)
Q Consensus 27 ~~~~Y~~~~------~~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~ 100 (468)
+++|||++| ..+.+++||.++||||+|+|+.+++++ ++...+ ....+..+.+ .+ ++|||+|||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~~---~k--~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFKK---LK--GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHHh---hc--CcEEEEEEeCCCC
Confidence 479999996 357799999999999999999999875 666643 3344444432 22 4999999999986
Q ss_pred CCC----cccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC----------CcchhhHHHHHHHHHHHHHHHh
Q 012216 101 PNY----STYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT----------SWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 101 ~~~----~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~----------~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
+.. ..|+.++ ++++|++||+++++++++|+|||||||||+|.. ++|+++|+.||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 111 1488888 999999999999999999999999999999863 35789999999999999974
Q ss_pred hccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCC-------CCCCCCcHHHHH
Q 012216 167 RNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALY-------DPNSVSNTEYGI 239 (468)
Q Consensus 167 ~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~-------~~~~~~~~~~~v 239 (468)
+++||+++|+.+... ..||++++.+++||||||+||+||+|.. .+.+++|.. ......+++.+|
T Consensus 151 -------~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~~~~~~p~~p~~~~~~~~~~~~~~~~~v 221 (345)
T cd02878 151 -------GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDY-GNKWASPGCPAGNCLRSHVNKTETLDAL 221 (345)
T ss_pred -------CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCc-cCCcCCCCCCcccccccCCCchhHHHHH
Confidence 278999998765433 3599999999999999999999999853 334444421 111123578999
Q ss_pred HHHHHCCCCcCceeeeccceeeeeeecCCCCCCCccccCCCCC--------CCCCcccHHHHHHHh-hcCCCCeEEEEec
Q 012216 240 TEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAF--------SDDGLVTYKEINNRI-KNYGPNVQVMYNS 310 (468)
Q Consensus 240 ~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~~d~ 310 (468)
+.|++.|+|++||+||+|+|||.|++.++.++++++|+.|++. ...+.+.|.++|..+ ...+ ++..||+
T Consensus 222 ~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~ 299 (345)
T cd02878 222 SMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDT 299 (345)
T ss_pred HHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEec
Confidence 9999999999999999999999999999999999999987642 123445569999754 4456 8899999
Q ss_pred ceeeeeE-EeCCeEEEEeChHHHHHHHHHHhhcCcceeeeeeccCC
Q 012216 311 TYVVNYC-SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355 (468)
Q Consensus 311 ~~~~~y~-~~~~~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d 355 (468)
.+++||. +.+.+||+|||++|++.|++|+++++|+|+++|++++|
T Consensus 300 ~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 300 DSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 9999987 46779999999999999999999999999999999875
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.9e-58 Score=444.70 Aligned_cols=283 Identities=29% Similarity=0.513 Sum_probs=244.5
Q ss_pred EEEEecCCCCcC----CC-CCCCCCCcEEEEeeEEeeCCCceeecC-------------------CccHHHHHHHHHHHH
Q 012216 28 RAGYWDSGNGFP----VS-DVNSALFTHLMCGFADVNSTSYELSLS-------------------PSDEKQFSNFTDIVK 83 (468)
Q Consensus 28 ~~~Y~~~~~~~~----~~-~~~~~~~thii~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~k 83 (468)
|+|||++|..+. +. ++|.++||||+|+|+.+++++..+... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 589999975554 33 589999999999999999987554322 11334566665 489
Q ss_pred hhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------CcchhhHHHH
Q 012216 84 IKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT---------SWDKYNIGIL 154 (468)
Q Consensus 84 ~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~---------~~~~~~~~~~ 154 (468)
+++|++|||+|||||+. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999986 789999999999999999999999999999999999999975 4788999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCC----
Q 012216 155 FKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPN---- 230 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~---- 230 (468)
|++||++|++++.+ ..++++||+++|+.+.... .++++++.+++|+||||+||+|++|. ..++++|||+...
T Consensus 158 l~~Lr~~l~~~~~~--~~~~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 158 LKELREALDALGAE--TGRKYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHhhhc--cCCceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCC
Confidence 99999999987643 1234899999997765433 47899999999999999999999975 7899999998533
Q ss_pred CCCcHHHHHHHHHHCCCCcCceeeeccceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEec
Q 012216 231 SVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNS 310 (468)
Q Consensus 231 ~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~ 310 (468)
...+++.+++.|++.|+|++||+||||+||+.|++ +...||+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~ 275 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDE 275 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcC
Confidence 35789999999999999999999999999999952 3578999
Q ss_pred ceeeeeEEeC--CeEEEEeChHHHHHHHHHHhhcCcceeeeeeccCC
Q 012216 311 TYVVNYCSIG--KIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355 (468)
Q Consensus 311 ~~~~~y~~~~--~~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d 355 (468)
.+++||++.+ ++||+|||++|++.|++|+++++|+|+++|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999966 89999999999999999999999999999999876
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-58 Score=429.34 Aligned_cols=331 Identities=25% Similarity=0.424 Sum_probs=261.2
Q ss_pred CCCcEEEEEecCCC-----CcCCCCCCCCCCcEEEEeeEEeeCCCce----eecCC----------------c--cHHHH
Q 012216 23 AQTLIRAGYWDSGN-----GFPVSDVNSALFTHLMCGFADVNSTSYE----LSLSP----------------S--DEKQF 75 (468)
Q Consensus 23 ~~~~~~~~Y~~~~~-----~~~~~~~~~~~~thii~~~~~~~~~~~~----~~~~~----------------~--~~~~~ 75 (468)
..+++++|||++|. .|.+.+||++++|||+|+|+.|+.++.. +.++. . ....+
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 45689999999953 5678999999999999999999988732 11110 0 12233
Q ss_pred HHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------Cc
Q 012216 76 SNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT---------SW 146 (468)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~---------~~ 146 (468)
..+ +.+|+++|++|+++|||||+. |..|+.++.+.+.|++|++++++++++|+|||||||||||++ +.
T Consensus 115 ~~L-~~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 115 GAL-FDLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred HHH-HHHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 444 459999999999999999997 999999999999999999999999999999999999999974 56
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCC
Q 012216 147 DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL 226 (468)
Q Consensus 147 ~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl 226 (468)
++++|+.||++||++|++++.+ + .++|.||+|.|+.+.... +.+..++.+++||||+|||||||.| ...+||+|||
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~e-d-gr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~L 267 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGVE-D-GRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAAL 267 (441)
T ss_pred cHHHHHHHHHHHHHHHhhcccc-c-CceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-cccccccccc
Confidence 8899999999999999998876 3 345999999999888777 6788999999999999999999987 7889999999
Q ss_pred CC----CC---CCCcH------HHHHHHHHHCCCCcCceeeeccceeeeeeecCCCCCC----CccccC--CC--CCCCC
Q 012216 227 YD----PN---SVSNT------EYGITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNG----IGAAAT--GP--AFSDD 285 (468)
Q Consensus 227 ~~----~~---~~~~~------~~~v~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~----~~~~~~--~~--~~~~~ 285 (468)
|+ +. ....+ ..-++.....++||+||+||+|+|||.|..++....+ ...... |+ ++...
T Consensus 268 y~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a 347 (441)
T COG3325 268 YGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEA 347 (441)
T ss_pred ccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccc
Confidence 93 11 11222 2244455567899999999999999999988765532 222111 11 22222
Q ss_pred Ccc--cHH---HHH-HHhhcCCCCeEEEEecceeeeeEE--eCCeEEEEeChHHHHHHHHHHhhcCcceeeeeeccCCch
Q 012216 286 GLV--TYK---EIN-NRIKNYGPNVQVMYNSTYVVNYCS--IGKIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357 (468)
Q Consensus 286 g~~--~y~---~i~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d~~ 357 (468)
+.. .|. .+. +..+.++ +...||+..++||+| ..+.+|+|||++|++.|.+|+.+.+|+|+++|++++|-.
T Consensus 348 ~n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n 425 (441)
T COG3325 348 GNGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDEN 425 (441)
T ss_pred cccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcc
Confidence 222 221 222 3344556 899999999999999 678999999999999999999999999999999999954
Q ss_pred hhhhH
Q 012216 358 WMLSQ 362 (468)
Q Consensus 358 ~~~~~ 362 (468)
..+-.
T Consensus 426 ~~lln 430 (441)
T COG3325 426 GVLLN 430 (441)
T ss_pred hhHHH
Confidence 44433
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.1e-53 Score=418.64 Aligned_cols=320 Identities=32% Similarity=0.576 Sum_probs=269.1
Q ss_pred cEEEEEecCCCC-----cCCCCCCCCCCcEEEEeeEEeeCCCceee-----cCCc-cHHHHHHHHHHHHhhCCCcEEEEE
Q 012216 26 LIRAGYWDSGNG-----FPVSDVNSALFTHLMCGFADVNSTSYELS-----LSPS-DEKQFSNFTDIVKIKNPSITTLLS 94 (468)
Q Consensus 26 ~~~~~Y~~~~~~-----~~~~~~~~~~~thii~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~k~~~~~~kvlls 94 (468)
++++|||+.|.. +.+++++.+.||||+|+|+.+++++.... .... ....+.. .+.+|+++|++||++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKN-LKELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHH-HHHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhH-HHHHHhhccCceEEEE
Confidence 579999998643 66889999999999999999999985432 2222 3334444 4558899999999999
Q ss_pred EcCCCCCCCc-ccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC---cchhhHHHHHHHHHHHHHHHhhccC
Q 012216 95 IGGGNNPNYS-TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS---WDKYNIGILFKEWRAAVDLEARNNS 170 (468)
Q Consensus 95 iGg~~~~~~~-~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~---~~~~~~~~~l~~lr~~l~~~~~~~~ 170 (468)
|||+.. +. .|..++.+++.|++|+++|++++++|+|||||||||++... +++++|+.||++||++|++..+..
T Consensus 80 igg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~- 156 (343)
T PF00704_consen 80 IGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG- 156 (343)
T ss_dssp EEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc-
Confidence 999986 55 89999999999999999999999999999999999999763 589999999999999999875431
Q ss_pred CCcceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCC---CCCcHHHHHHHHHHCCC
Q 012216 171 SKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPN---SVSNTEYGITEWIEEGL 247 (468)
Q Consensus 171 ~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~---~~~~~~~~v~~~~~~g~ 247 (468)
++++||+++|+.+.... .++++++.+++|||++|+||++++|.. .+++++|+++.. ...+++.+++.|+..|+
T Consensus 157 --~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 157 --KGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp --STSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTS
T ss_pred --ceeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccC
Confidence 14899999997766433 358899999999999999999998755 899999998554 36789999999999999
Q ss_pred CcCceeeeccceeeeeeecCCCCCCCcccc---CCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEeC--Ce
Q 012216 248 SADKMVLCLPFYGYAWTLVKPEDNGIGAAA---TGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIG--KI 322 (468)
Q Consensus 248 ~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~ 322 (468)
|++||+||+|+||+.|++.++..+....+. .+..+...+.++|.++|..++.++ +...||+.++++|.+.. ++
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~ 310 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKH 310 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCe
Confidence 999999999999999999988776655543 344556778999999999988778 89999999999999966 79
Q ss_pred EEEEeChHHHHHHHHHHhhcCcceeeeeeccCC
Q 012216 323 WFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYD 355 (468)
Q Consensus 323 ~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d 355 (468)
||+|||++|++.|+++++++||+|+++|++++|
T Consensus 311 ~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 311 WISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999999876
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=3e-53 Score=408.15 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=238.6
Q ss_pred EEEEEecCCC--CcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEE--EEEcCCCCCC
Q 012216 27 IRAGYWDSGN--GFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTL--LSIGGGNNPN 102 (468)
Q Consensus 27 ~~~~Y~~~~~--~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvl--lsiGg~~~~~ 102 (468)
.++|||++|. .+.+.+++..+||||+|+|+.++++++.+...+..... ..+++.+|+++|++||+ +++|||+.
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4689999864 55688889999999999999999887655554321111 22445689999999999 66799874
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCCC---CcchhhHHHHHHHHHHHHHHHhhccCCCcceEEE
Q 012216 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS-WPHANT---SWDKYNIGILFKEWRAAVDLEARNNSSKSQLILT 178 (468)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD-~E~~~~---~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls 178 (468)
..|+.+++|++.|++||+++++++++||||||||| ||+|.. ++++++|+.||++||++|++.+ +.++
T Consensus 81 -~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~--------~~l~ 151 (318)
T cd02876 81 -QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN--------LKLI 151 (318)
T ss_pred -HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC--------CEEE
Confidence 46999999999999999999999999999999999 999964 3588999999999999998754 4577
Q ss_pred EEeecCccc-----ccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCC-CCcCce
Q 012216 179 AEVAYSPHS-----TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEG-LSADKM 252 (468)
Q Consensus 179 ~a~~~~~~~-----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g-~~~~Ki 252 (468)
+++|+.... ....||+++|++++|+|+||+||+|++ ..+||+||++ +++.++++|++.| +|++||
T Consensus 152 ~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~Kl 222 (318)
T cd02876 152 LVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKI 222 (318)
T ss_pred EEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHe
Confidence 776643321 223489999999999999999999975 6799999996 8999999999987 999999
Q ss_pred eeeccceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeee-eEEeC---CeEEEEeC
Q 012216 253 VLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVN-YCSIG---KIWFGFDD 328 (468)
Q Consensus 253 ~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~~~---~~~i~yd~ 328 (468)
+||||+|||.|++.+ .+ +.+++.+.++++++.+ ++..||+.++.+ |.|.+ ++||||||
T Consensus 223 vlGip~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd 284 (318)
T cd02876 223 LLGLNFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPT 284 (318)
T ss_pred EEeccccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCC
Confidence 999999999997643 11 2234455556666666 788999996555 67743 79999999
Q ss_pred hHHHHHHHHHHhhcCcceeeeeeccCCch
Q 012216 329 VEAVRVKVSYAKEKKLRGYYGWEVSYDHY 357 (468)
Q Consensus 329 ~~S~~~k~~~~~~~~l~G~~~w~~~~d~~ 357 (468)
++|++.|++++++.+| |+++|++++++.
T Consensus 285 ~~Si~~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 285 LKSIQLRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred HHHHHHHHHHHHHcCC-cEEEEcccCCch
Confidence 9999999999999999 999999999874
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=5.1e-51 Score=395.58 Aligned_cols=298 Identities=20% Similarity=0.263 Sum_probs=238.6
Q ss_pred CCcEEEEEecCCCCcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCC
Q 012216 24 QTLIRAGYWDSGNGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNY 103 (468)
Q Consensus 24 ~~~~~~~Y~~~~~~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~ 103 (468)
+.+.++||.... ..-...+++.+|||..+ + +.++ +++..+|++ ++||+++ ++..
T Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~~----~~~~~A~~~--~v~v~~~-~~~~---- 87 (358)
T cd02875 34 PRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DIDD----ELLCYAHSK--GVRLVLK-GDVP---- 87 (358)
T ss_pred CceEEEEEEeCC--CcCcccccccceEEEec-------C------CCCH----HHHHHHHHc--CCEEEEE-CccC----
Confidence 456789998654 34577899999999976 1 1111 344445544 8999987 2221
Q ss_pred cccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC--CcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEe
Q 012216 104 STYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT--SWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEV 181 (468)
Q Consensus 104 ~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (468)
...+.|+++|++||+++++++++|||||||||||+|.. +.++++|+.|+++||++|+++++ +++||+++
T Consensus 88 ---~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~------~~~Lsvav 158 (358)
T cd02875 88 ---LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENP------GYQISFDV 158 (358)
T ss_pred ---HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCC------CcEEEEEE
Confidence 23578999999999999999999999999999999974 46789999999999999997653 38999999
Q ss_pred ecCccccccc-CCHHHHhccccEEeeccccccCC-CC-CCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeeccc
Q 012216 182 AYSPHSTAAA-YTVDSIRQYLNWVHVMTTEYSNP-MW-TNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPF 258 (468)
Q Consensus 182 ~~~~~~~~~~-~~~~~l~~~~D~v~lm~yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~ 258 (468)
|..|.....+ ||+++|++++|||+||+||+|+. |. ...++++||+. +++.+++.|+..|+|++||+||+|+
T Consensus 159 ~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip~ 232 (358)
T cd02875 159 AWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLPW 232 (358)
T ss_pred ecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeCC
Confidence 9776654444 99999999999999999999975 43 34689999985 8999999999999999999999999
Q ss_pred eeeeeeecCCCCC-----CCccccCCCCC--CCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEE-e---C-CeEEEE
Q 012216 259 YGYAWTLVKPEDN-----GIGAAATGPAF--SDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCS-I---G-KIWFGF 326 (468)
Q Consensus 259 yG~~~~~~~~~~~-----~~~~~~~~~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~y 326 (468)
|||+|++.++... .++.|..|... ..++.++|.++++.+++.+ +...||+.+++||++ . + .+||||
T Consensus 233 YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~y 310 (358)
T cd02875 233 YGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWY 310 (358)
T ss_pred CCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEe
Confidence 9999997665411 12333333221 1235799999999888776 788999999999975 2 2 279999
Q ss_pred eChHHHHHHHHHHhhcCcceeeeeeccCCchhhhhHHH
Q 012216 327 DDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWMLSQAA 364 (468)
Q Consensus 327 d~~~S~~~k~~~~~~~~l~G~~~w~~~~d~~~~~~~~~ 364 (468)
||++|++.|++++++.||+|+++|+++.||..+.+.+.
T Consensus 311 dD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 311 DNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCchhh
Confidence 99999999999999999999999999999988776543
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=3e-49 Score=380.33 Aligned_cols=291 Identities=20% Similarity=0.329 Sum_probs=240.3
Q ss_pred EEEEEecCCCCc--CCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCC--CC
Q 012216 27 IRAGYWDSGNGF--PVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNN--PN 102 (468)
Q Consensus 27 ~~~~Y~~~~~~~--~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~--~~ 102 (468)
.++|||.+|... ....-...++|||++.|+.+.++| .+... . ..++++.+|++ ++|++++|||+.. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 478999885553 444557789999999999999887 33222 1 13456656665 8999999999862 13
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEee
Q 012216 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVA 182 (468)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (468)
++.|+.++.|++.|++|++++++++++|+|||||||||++.. +++++|+.||++||++|++.+ ++|+++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~--------~~lsv~~~ 145 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAG--------YTLSTAVV 145 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcC--------cEEEEEec
Confidence 567899999999999999999999999999999999999864 789999999999999998643 67888776
Q ss_pred cCcc-----cccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeecc
Q 012216 183 YSPH-----STAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLP 257 (468)
Q Consensus 183 ~~~~-----~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp 257 (468)
+... .+...|+++++.+++|+|+||+||+|++| ..++|+||+. +++..++++. .|+|++||+||||
T Consensus 146 p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip 216 (313)
T cd02874 146 PKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIP 216 (313)
T ss_pred CccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeec
Confidence 4422 12345899999999999999999999875 5789999985 7788887776 6999999999999
Q ss_pred ceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEE-e----CCeEEEEeChHHH
Q 012216 258 FYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCS-I----GKIWFGFDDVEAV 332 (468)
Q Consensus 258 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~----~~~~i~yd~~~S~ 332 (468)
+||+.|++.++. ....+.++|.++++++.+.+ +...||+.+++||.. . ..+||+|||++|+
T Consensus 217 ~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si 282 (313)
T cd02874 217 LYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSL 282 (313)
T ss_pred ccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHH
Confidence 999999865411 11246788999999988888 889999999999864 2 3589999999999
Q ss_pred HHHHHHHhhcCcceeeeeeccCCch
Q 012216 333 RVKVSYAKEKKLRGYYGWEVSYDHY 357 (468)
Q Consensus 333 ~~k~~~~~~~~l~G~~~w~~~~d~~ 357 (468)
+.|++++++.+|+|+++|++++||+
T Consensus 283 ~~K~~~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 283 QAKFELAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCc
Confidence 9999999999999999999999985
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=2.3e-45 Score=348.90 Aligned_cols=287 Identities=12% Similarity=0.127 Sum_probs=227.2
Q ss_pred EEEEecCCCCcC--CCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcc
Q 012216 28 RAGYWDSGNGFP--VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYST 105 (468)
Q Consensus 28 ~~~Y~~~~~~~~--~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~ 105 (468)
++|||..|..-. ........+|||++.|+.+...++.+..... .. ....++.+|.++|.++++.+++|+.. ++..
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-~~-~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~~ 78 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-PQ-GVAIIAAAKAHPKVLPLVQNISGGAW-DGKN 78 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC-hH-HHHHHHHHHcCCceeEEEEecCCCCC-CHHH
Confidence 689998864433 3333557899999999999855456654332 22 22344557778888999999988765 4567
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
|+.++.|++.|++||+++++++++|+|||||||||++.. +++++|+.|+++||++|++.+ +.||+++|+.+
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~--------~~lsv~v~~~~ 149 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQG--------KQLTVTVPADE 149 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcC--------cEEEEEecCCC
Confidence 999999999999999999999999999999999999864 889999999999999998754 67999988654
Q ss_pred ccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeeccceeeeeee
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWTL 265 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~~~ 265 (468)
. .||++++.+++|+|+||+||+|+++ ..++|.+|.. +++..++... .++|++||+||||+||++|++
T Consensus 150 ~----~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~~vp~~KlvlGip~YG~~w~~ 216 (298)
T cd06549 150 A----DWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD------WFESNLAQAV-KKLPPEKLIVALGSYGYDWTK 216 (298)
T ss_pred C----CCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh------hHHHHHHHHH-hCCCHHHEEEEecccCccccC
Confidence 2 4899999999999999999999864 4567777653 5677777654 589999999999999999975
Q ss_pred cCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeee-eEE-e---CCeEEEEeChHHHHHHHHHHh
Q 012216 266 VKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVN-YCS-I---GKIWFGFDDVEAVRVKVSYAK 340 (468)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~i~yd~~~S~~~k~~~~~ 340 (468)
..+ ...++..+...++.+.+ ....||+....| |.+ + ..|+|||+|++|++.|+++++
T Consensus 217 ~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~ 278 (298)
T cd06549 217 GGN----------------TKAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQ 278 (298)
T ss_pred CCC----------------CcccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHH
Confidence 321 11344556666566666 677888877666 444 2 248999999999999999999
Q ss_pred hcCcceeeeeeccCCch
Q 012216 341 EKKLRGYYGWEVSYDHY 357 (468)
Q Consensus 341 ~~~l~G~~~w~~~~d~~ 357 (468)
+.+|+|+++|+++.+|+
T Consensus 279 ~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 279 RLGPAGVALWRLGSEDP 295 (298)
T ss_pred HcCCCcEEEEeccCCCC
Confidence 99999999999999875
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=5.2e-45 Score=339.43 Aligned_cols=240 Identities=25% Similarity=0.502 Sum_probs=204.4
Q ss_pred EEEEecCCCCcC--CCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcc
Q 012216 28 RAGYWDSGNGFP--VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYST 105 (468)
Q Consensus 28 ~~~Y~~~~~~~~--~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~ 105 (468)
++|||++|.... +++++..+||||+|+|+.++++| .+...+. ...+..+++.+|+ +++||+++|||+.. ..
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~---~~ 73 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSP---PE 73 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCC---Cc
Confidence 589999987665 89999999999999999999886 6666542 3345566665655 48999999999874 34
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
|..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++.+ ++||+++++.+
T Consensus 74 ~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~--------~~lt~av~~~~ 143 (253)
T cd06545 74 FTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEG--------KLLTAAVSSWN 143 (253)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcC--------cEEEEEccCcc
Confidence 6779999999999999999999999999999999999752 7899999999999998643 67999987543
Q ss_pred ccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCC-CcCceeeeccceeeeee
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGL-SADKMVLCLPFYGYAWT 264 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~-~~~Ki~lglp~yG~~~~ 264 (468)
.. +...++.+++|+|+||+||++|+|....+++++|+. +++..+++|+..|+ |++||+||||+||+.|
T Consensus 144 ~~----~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w- 212 (253)
T cd06545 144 GG----AVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYGF- 212 (253)
T ss_pred cc----cccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCccccc-
Confidence 22 223577899999999999999998777889999985 78999999999998 9999999999999988
Q ss_pred ecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEEeCCeEEEEeChHHHHHHHHHHhhcCc
Q 012216 265 LVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKL 344 (468)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~yd~~~S~~~k~~~~~~~~l 344 (468)
+|+++.++..|.+++++. +
T Consensus 213 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 213 ------------------------------------------------------------YYNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred ------------------------------------------------------------cCCCHHHHHHHHHHHHHh-c
Confidence 157778999999999999 9
Q ss_pred ceeeeeeccCCc
Q 012216 345 RGYYGWEVSYDH 356 (468)
Q Consensus 345 ~G~~~w~~~~d~ 356 (468)
+|+++|++++|.
T Consensus 232 gG~~~w~~~~d~ 243 (253)
T cd06545 232 GGVMIWELSQDA 243 (253)
T ss_pred CeEEEEeccCCC
Confidence 999999999986
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=8.2e-35 Score=264.76 Aligned_cols=172 Identities=29% Similarity=0.494 Sum_probs=140.6
Q ss_pred EEEEecCCCCcC---CCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCc
Q 012216 28 RAGYWDSGNGFP---VSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYS 104 (468)
Q Consensus 28 ~~~Y~~~~~~~~---~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~ 104 (468)
++|||+.|.... +..++.++||||+|+|+.+++++......+.........++.+++++|++||++||||+.. ..
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~--~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD--SS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC--CC
Confidence 489999965554 4788999999999999999988744331222222333444557887899999999999886 44
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCc--chhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEee
Q 012216 105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW--DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVA 182 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~--~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (468)
.+ .++.+++.|++|++++++++++|+|||||||||+|.... ++++|+.|+++||++|+++ +++||+++|
T Consensus 79 ~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~--------~~~ls~a~~ 149 (210)
T cd00598 79 PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA--------NYLLTIAVP 149 (210)
T ss_pred Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc--------CcEEEEEec
Confidence 44 789999999999999999999999999999999998633 4899999999999999864 378999999
Q ss_pred cCcccccccCCHHHHhccccEEeecccc
Q 012216 183 YSPHSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
+.+......|+++++.+++|+|++|+||
T Consensus 150 ~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 150 ASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred CChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 7766544458999999999999999998
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=262.90 Aligned_cols=241 Identities=19% Similarity=0.283 Sum_probs=196.3
Q ss_pred CcEEEEEEcCCCC----CCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHH
Q 012216 88 SITTLLSIGGGNN----PNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVD 163 (468)
Q Consensus 88 ~~kvllsiGg~~~----~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~ 163 (468)
+++.++.+...+. -+.+..+.++.|+..++++++++++.++.+|+.|+.||+|.... .|++.|+.|++++|++|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhc
Confidence 5677766643331 02344589999999999999999999999999999999998875 999999999999999999
Q ss_pred HHhhccCCCcceEEEEEeecCccc-----ccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHH
Q 012216 164 LEARNNSSKSQLILTAEVAYSPHS-----TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYG 238 (468)
Q Consensus 164 ~~~~~~~~~~~~~ls~a~~~~~~~-----~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~ 238 (468)
+.+ +.+|+|+|+.... +...||+..+.+++|+|.+|+||.|..| ..+|+.||.- +++..
T Consensus 239 ~~G--------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~------~vr~~ 302 (423)
T COG3858 239 SGG--------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG------WVRKV 302 (423)
T ss_pred cCC--------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch------hHhhh
Confidence 765 7899999965533 3344899999999999999999999775 7889999984 77777
Q ss_pred HHHHHHCCCCcCceeeeccceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEE
Q 012216 239 ITEWIEEGLSADKMVLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCS 318 (468)
Q Consensus 239 v~~~~~~g~~~~Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~ 318 (468)
+++.+. .+|++||+||+|+||++|....+.. |..+ ..+++.+-..+.+..+ .++.||..++.||++
T Consensus 303 ieya~T-~iP~~Kv~mGip~YGYDW~~~y~~~---g~~~--------~a~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~ 368 (423)
T COG3858 303 IEYALT-VIPAEKVMMGIPLYGYDWTLPYDPL---GYLA--------RAISPDEAIDIANRYN--ATIQYDATSQSPFFY 368 (423)
T ss_pred hhhhhe-ecchHHeEEccccccccccCCCCCC---ccee--------eecCcchhhhhhcccC--CccCcCccccCceEE
Confidence 777776 6999999999999999997644221 1111 1144555445566666 889999999999988
Q ss_pred ----eC-CeEEEEeChHHHHHHHHHHhhcCcceeeeeeccCCchhh
Q 012216 319 ----IG-KIWFGFDDVEAVRVKVSYAKEKKLRGYYGWEVSYDHYWM 359 (468)
Q Consensus 319 ----~~-~~~i~yd~~~S~~~k~~~~~~~~l~G~~~w~~~~d~~~~ 359 (468)
.+ .|++||||.+|+..|.++++++||.|++.|.|+++++..
T Consensus 369 y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~ 414 (423)
T COG3858 369 YVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414 (423)
T ss_pred EEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhH
Confidence 33 789999999999999999999999999999999998643
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.97 E-value=4.3e-31 Score=242.26 Aligned_cols=203 Identities=18% Similarity=0.184 Sum_probs=144.8
Q ss_pred CCcCCCCCCCCC--CcEEEEeeE-EeeC----CCceeecCCccHH-HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccc
Q 012216 36 NGFPVSDVNSAL--FTHLMCGFA-DVNS----TSYELSLSPSDEK-QFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYS 107 (468)
Q Consensus 36 ~~~~~~~~~~~~--~thii~~~~-~~~~----~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~ 107 (468)
...+++++|.+. ||||||+|+ ..+. .++.....+.... .+..+ ..+|+++|++|||+|||||+...+..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAV-KSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHH-HHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 445789999888 999999999 3332 1334444333332 33444 4699999999999999999962222233
Q ss_pred cccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccc
Q 012216 108 SMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHS 187 (468)
Q Consensus 108 ~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~ 187 (468)
...+.+..|++|+++++++|++|||||||||||+|. .++++|+.|+++||++|++.+ +++.+++.+....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~--------~lt~a~vap~~~~ 159 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG--------VIKVASIAPSEDA 159 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC--------CeEEEEecCCccc
Confidence 333444556777999999999999999999999994 679999999999999998643 3334433333322
Q ss_pred ccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeeccceeeee
Q 012216 188 TAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAW 263 (468)
Q Consensus 188 ~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~ 263 (468)
. ..+.++.+.+++|+|++|+||+++.+... ..+ .....++.|.+ ++|++||++|+|++++.|
T Consensus 160 ~-~~~y~~~~~~~~d~id~~~~qfy~~~~~~---~~~---------~~~~~~~~~~~-~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 E-QSHYLALYNAYGDYIDYVNYQFYNYGVPT---TVA---------KYVEFYDEVAN-NYPGKKVLASFSTDGEDG 221 (253)
T ss_pred c-ccccHHHHHHhhCceeEEEhhhhCCCCCC---CHH---------HHHHHHHHHHh-CCCcccEEEEEecCCCcc
Confidence 1 23457888999999999999999864211 111 22345566654 799999999999999777
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=2.1e-30 Score=239.58 Aligned_cols=195 Identities=14% Similarity=0.247 Sum_probs=144.4
Q ss_pred EEEEEecCCCC--------cCCCCCCCCCCcEEEEeeEEeeCCCceeecCCc--cH----HHHHHHHHHHHhhCCCcEEE
Q 012216 27 IRAGYWDSGNG--------FPVSDVNSALFTHLMCGFADVNSTSYELSLSPS--DE----KQFSNFTDIVKIKNPSITTL 92 (468)
Q Consensus 27 ~~~~Y~~~~~~--------~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~k~~~~~~kvl 92 (468)
++||||..+.. +++..++..+||||||+|+.++.+| ++.+.+. +. ..+..+ +.+| ++++|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i-~~~~--~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTEL-AILQ--SSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHH-HHHH--hCCCEEE
Confidence 57999988421 1223456789999999999999875 6766543 11 122222 2244 5799999
Q ss_pred EEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 012216 93 LSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSK 172 (468)
Q Consensus 93 lsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~ 172 (468)
+|||||+. ..|+.++.+++.|++|++++++++++|+|||||||||+|. +..+|+.|+++||+++++
T Consensus 77 lSiGG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~-------- 142 (256)
T cd06546 77 GMLGGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGP-------- 142 (256)
T ss_pred EEECCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCC--------
Confidence 99999974 2488888899999999999999999999999999999985 357999999999999852
Q ss_pred cceEEEEEeecCc---c-cccccCCHHHHh----ccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 012216 173 SQLILTAEVAYSP---H-STAAAYTVDSIR----QYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIE 244 (468)
Q Consensus 173 ~~~~ls~a~~~~~---~-~~~~~~~~~~l~----~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~ 244 (468)
+++||+++++.. . ....++++.++. .++||+|+|.||.++... + ......|.+
T Consensus 143 -~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~-----------------~-~~~~~~~~~ 203 (256)
T cd06546 143 -DFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS-----------------S-PSDYDAIVA 203 (256)
T ss_pred -CcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc-----------------C-HHHHHHHHH
Confidence 388998865331 1 112236776665 599999999999765410 0 122345666
Q ss_pred CCCCcCceeeeccc
Q 012216 245 EGLSADKMVLCLPF 258 (468)
Q Consensus 245 ~g~~~~Ki~lglp~ 258 (468)
.++|++||++|+|.
T Consensus 204 ~~~~~~Kv~iGlpa 217 (256)
T cd06546 204 QGWDPERIVIGLLT 217 (256)
T ss_pred cCCCcccEEEEEec
Confidence 79999999999986
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=3.4e-28 Score=232.60 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=145.5
Q ss_pred cEEEEEecCCCCcCC-----CCCCCCCCcEEEEeeEEeeCCCc-eeec------CCccHHHHHHHHHHHHhhCCCcEEEE
Q 012216 26 LIRAGYWDSGNGFPV-----SDVNSALFTHLMCGFADVNSTSY-ELSL------SPSDEKQFSNFTDIVKIKNPSITTLL 93 (468)
Q Consensus 26 ~~~~~Y~~~~~~~~~-----~~~~~~~~thii~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~k~~~~~~kvll 93 (468)
++++|||++|..... .+...+.||||+++|+.++.++. .+.+ .......+.+.++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 478999998644321 22334899999999999987642 2221 122334555555667765 899999
Q ss_pred EEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC----cchhhHHHHHHHHHHHHHHHhhcc
Q 012216 94 SIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS----WDKYNIGILFKEWRAAVDLEARNN 169 (468)
Q Consensus 94 siGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~----~~~~~~~~~l~~lr~~l~~~~~~~ 169 (468)
||||+.. + ..+.+++.|++|++++++++++|+|||||||||+|... +++++|+.|+++||+++++
T Consensus 79 SiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~----- 147 (312)
T cd02871 79 SIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP----- 147 (312)
T ss_pred EEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999875 2 24678899999999999999999999999999998653 3678999999999998853
Q ss_pred CCCcceEEEEEeecCcccc---------cccC--CHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHH
Q 012216 170 SSKSQLILTAEVAYSPHST---------AAAY--TVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYG 238 (468)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~~---------~~~~--~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~ 238 (468)
+++||+|+.+. ... ...| ...++.+++|++|+|.||.++.+. .. +.....+.......
T Consensus 148 ----~~~lT~AP~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-----~~-~~~~~~~~~~~~~~ 216 (312)
T cd02871 148 ----NFILTMAPETP-YVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-----CD-GQSYSQGTADFLVA 216 (312)
T ss_pred ----CeEEEECCCcc-cccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-----cc-ccCCccchhHHHHH
Confidence 38999995432 111 1123 367788899999999999876431 00 00000111122333
Q ss_pred HHHHHHCC-----------CCcCceeeeccce
Q 012216 239 ITEWIEEG-----------LSADKMVLCLPFY 259 (468)
Q Consensus 239 v~~~~~~g-----------~~~~Ki~lglp~y 259 (468)
+..++..+ +|++||++|+|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 217 LADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 33333344 8999999999973
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.3e-26 Score=206.53 Aligned_cols=292 Identities=14% Similarity=0.174 Sum_probs=222.0
Q ss_pred EEEEEecCC--CCcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEE--cCCCCCC
Q 012216 27 IRAGYWDSG--NGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSI--GGGNNPN 102 (468)
Q Consensus 27 ~~~~Y~~~~--~~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsi--Gg~~~~~ 102 (468)
.+.||.++| .+|++..+-.+++|||.+-|+.+...|..+.+..... .-..+++.+|+++++++++.-+ -.+.
T Consensus 80 ~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hd-id~gwiralRk~~~~l~ivPR~~fd~~~--- 155 (392)
T KOG2091|consen 80 TVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHD-IDPGWIRALRKSGKDLHIVPRFYFDEFT--- 155 (392)
T ss_pred ceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeeccc-CChHHHHHHHHhCCCceeeceehhhhcc---
Confidence 468999884 7889999999999999999999987764444433211 1124566799999999987654 3444
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEe
Q 012216 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS-WPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEV 181 (468)
Q Consensus 103 ~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD-~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (468)
+..+..++.+++.|++..+.++++++++||||+.|+ |....+.-.....-.|++.|-++|+++... .++++..
T Consensus 156 ~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq~l~------~iLvvPp 229 (392)
T KOG2091|consen 156 SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQELQ------AILVVPP 229 (392)
T ss_pred chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhheE------EEEEeCC
Confidence 567889999999999999999999999999999998 543322111123446777888888876543 4555443
Q ss_pred ecCccccccc----CCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeecc
Q 012216 182 AYSPHSTAAA----YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLP 257 (468)
Q Consensus 182 ~~~~~~~~~~----~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp 257 (468)
+..+...... -+++.|...+|.+.+||||+.+. ..++++||++ +++.+++...-...-+.||.+||.
T Consensus 230 ~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGlN 300 (392)
T KOG2091|consen 230 VIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGLN 300 (392)
T ss_pred CCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEeee
Confidence 3233332221 25778899999999999999875 6789999996 888888876544445689999999
Q ss_pred ceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEEEecceeeeeEE-----eCCeEEEEeChHHH
Q 012216 258 FYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVMYNSTYVVNYCS-----IGKIWFGFDDVEAV 332 (468)
Q Consensus 258 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-----~~~~~i~yd~~~S~ 332 (468)
|||++|...+ ..+.++-.+..++++... ..-.||+++...++- ++++-|.|++..|+
T Consensus 301 FYG~d~~~gd----------------g~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl 362 (392)
T KOG2091|consen 301 FYGNDFNLGD----------------GGEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSL 362 (392)
T ss_pred ccccccccCC----------------CCCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHhH
Confidence 9999996411 135688888888888887 778999999888665 35899999999999
Q ss_pred HHHHHHHhhcCcceeeeeeccCCc
Q 012216 333 RVKVSYAKEKKLRGYYGWEVSYDH 356 (468)
Q Consensus 333 ~~k~~~~~~~~l~G~~~w~~~~d~ 356 (468)
..+++++++.|. |+++|++++--
T Consensus 363 ~~Ri~lA~~~gv-gISIWe~GqGL 385 (392)
T KOG2091|consen 363 ELRIELARELGV-GISIWEYGQGL 385 (392)
T ss_pred HHHHHHHHHhCC-ceEeeeccCch
Confidence 999999999998 89999998653
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.89 E-value=2.5e-22 Score=187.77 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=140.0
Q ss_pred cEEEEEecCCCC------cCCCCCCCCCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCC
Q 012216 26 LIRAGYWDSGNG------FPVSDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGN 99 (468)
Q Consensus 26 ~~~~~Y~~~~~~------~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~ 99 (468)
++.+|||..|.+ ..+.++| ..+++|+.....++.++... .........+.++.+|++ |+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 467899988765 3455555 57899988555444332100 011223344555556665 999999999988
Q ss_pred CCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC------CcchhhHHHHHHHHHHHHHHHhhccCCCc
Q 012216 100 NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT------SWDKYNIGILFKEWRAAVDLEARNNSSKS 173 (468)
Q Consensus 100 ~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~~l~~lr~~l~~~~~~~~~~~ 173 (468)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.+.++|..|+++||+.+++.
T Consensus 76 ~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~-------- 144 (255)
T cd06542 76 L--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPT-------- 144 (255)
T ss_pred C--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcC--------
Confidence 6 4444 3456788999999999999999999999999999864 237789999999999999642
Q ss_pred ceEEEEEeecCcccccccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCcee
Q 012216 174 QLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMV 253 (468)
Q Consensus 174 ~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~ 253 (468)
+++|++++++..... +.+++.+++||+++|+||..+.- ... . ..-...|+|++|++
T Consensus 145 ~kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~--~~~-----~-------------~~~~~~g~~~~k~i 200 (255)
T cd06542 145 DKLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSS--TQR-----N-------------WNTNSPKIPPEKMV 200 (255)
T ss_pred CcEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCcc--CCc-----c-------------cccccCCCCHHHce
Confidence 378999877543221 67899999999999999865331 100 0 01113589999999
Q ss_pred eeccceee
Q 012216 254 LCLPFYGY 261 (468)
Q Consensus 254 lglp~yG~ 261 (468)
+|+++++.
T Consensus 201 ~~~~~~~~ 208 (255)
T cd06542 201 YTESFEEE 208 (255)
T ss_pred eeeeeecc
Confidence 99999864
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.89 E-value=1.2e-21 Score=182.44 Aligned_cols=200 Identities=21% Similarity=0.225 Sum_probs=136.2
Q ss_pred EEEEecCCC--CcCCCCCCCCCCcEEEEeeEEeeCCCce--eecCCcc-H------HHHHHHHHHHHhhCCCcEEEEEEc
Q 012216 28 RAGYWDSGN--GFPVSDVNSALFTHLMCGFADVNSTSYE--LSLSPSD-E------KQFSNFTDIVKIKNPSITTLLSIG 96 (468)
Q Consensus 28 ~~~Y~~~~~--~~~~~~~~~~~~thii~~~~~~~~~~~~--~~~~~~~-~------~~~~~~~~~~k~~~~~~kvllsiG 96 (468)
++.||..+. .-.-+..+...++-|+.+|+..-++++. +.+.... . ..+.+.++.++++ ++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEcc
Confidence 678996632 2223333556799999999988765432 2222221 1 2455555556655 999999999
Q ss_pred CCCCCCCcccccccCChhhHHHHHHHHHHHH------------HHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHH
Q 012216 97 GGNNPNYSTYSSMASNPSSRKSFIDSSIKIA------------RLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l------------~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~ 164 (468)
||+. +..| .+++.|++|++++.++. .+++|||||||||+|.. .+|..|+++||+.+++
T Consensus 81 G~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~ 150 (280)
T cd02877 81 GAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFAS 150 (280)
T ss_pred CCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhc
Confidence 9986 4333 67899999999998775 25779999999999864 6899999999999975
Q ss_pred HhhccCCCcceEEEEEeecCcccccccCCHHHHh-ccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 012216 165 EARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIR-QYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWI 243 (468)
Q Consensus 165 ~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~-~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~ 243 (468)
.. .++++||+|+++. ....+....+. .++|++++|.||..+. ....+.. ......++.|.
T Consensus 151 ~~-----~~~~~LTaAPq~~---~~d~~~~~~i~~~~~D~i~vqfYn~~~c--~~~~~~~---------~~~~~~~~~w~ 211 (280)
T cd02877 151 DP-----SKKYYLTAAPQCP---YPDASLGDAIATGLFDFIFVQFYNNPCC--SYASGNA---------SGFNFNWDTWT 211 (280)
T ss_pred cc-----CCceEEEeccccC---CcchhHHHHHccCccCEEEEEEecCccc--ccccccc---------chhhhHHHHHH
Confidence 32 1359999996653 12224445565 4999999999996532 1001111 13345667787
Q ss_pred HCCCCc---Cceeeeccce
Q 012216 244 EEGLSA---DKMVLCLPFY 259 (468)
Q Consensus 244 ~~g~~~---~Ki~lglp~y 259 (468)
+. ++. +||+||||..
T Consensus 212 ~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 212 SW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred Hh-cccCCCceEEEecccC
Confidence 64 665 8999999974
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.82 E-value=1.5e-19 Score=169.54 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=115.2
Q ss_pred CCCCcEEEEeeEEeeCCCceeecCCc---c-HHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHH
Q 012216 45 SALFTHLMCGFADVNSTSYELSLSPS---D-EKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFI 120 (468)
Q Consensus 45 ~~~~thii~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi 120 (468)
...|+||+++|+....++ ++.+... + ...+...++.+|++ ++||++|+|||.. . . +..+.+.|++|+
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~-~---~~~~~~~~~~~~ 93 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--T-P---LATSCTSADQLA 93 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--C-c---cccCcccHHHHH
Confidence 468999999999887543 5544332 1 23334445568877 6999999999985 2 2 334788999999
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCcch---hhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccc-ccCCHHH
Q 012216 121 DSSIKIARLYGFQGLDLSWPHANTSWDK---YNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTA-AAYTVDS 196 (468)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~---~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~ 196 (468)
+++.+++.+|+|||||||||++.. .++ +++.+.|++|+++++ ++.|++++|..|.... .++++.+
T Consensus 94 ~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p----------~l~vs~Tlp~~p~gl~~~g~~~l~ 162 (294)
T cd06543 94 AAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYP----------DLKISFTLPVLPTGLTPDGLNVLE 162 (294)
T ss_pred HHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCC----------CcEEEEecCCCCCCCChhHHHHHH
Confidence 999999999999999999999874 454 778888888887653 4789999987666544 4466777
Q ss_pred Hhc----cccEEeeccccccCC
Q 012216 197 IRQ----YLNWVHVMTTEYSNP 214 (468)
Q Consensus 197 l~~----~~D~v~lm~yd~~~~ 214 (468)
.+. .+|+||||+|||++.
T Consensus 163 ~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 163 AAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHcCCCcceeeeeeecCCCC
Confidence 777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.6e-16 Score=136.86 Aligned_cols=215 Identities=17% Similarity=0.316 Sum_probs=134.5
Q ss_pred CCCcEEEEEecCCCC--------cCCCCCCC----CCCcEEEEeeEEeeCCCceeecCC--ccHHHHHHHHHHHHhhCCC
Q 012216 23 AQTLIRAGYWDSGNG--------FPVSDVNS----ALFTHLMCGFADVNSTSYELSLSP--SDEKQFSNFTDIVKIKNPS 88 (468)
Q Consensus 23 ~~~~~~~~Y~~~~~~--------~~~~~~~~----~~~thii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~~~ 88 (468)
...++.+|||++|.. -+..+|.+ ..++.+-.+|..-..+ ..++-+ .....|+.-+..|.++ +
T Consensus 23 ~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~--iptf~P~~~~daeFr~~v~aLnae--G 98 (332)
T COG3469 23 ISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGD--IPTFKPYNDPDAEFRAQVGALNAE--G 98 (332)
T ss_pred cccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCC--CcccCcCCCCHHHHHHHHHHhhcc--C
Confidence 455699999998422 22222322 3355566666543331 222222 2335555555556665 7
Q ss_pred cEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC--CcchhhHHHHHHHHHHHHHHHh
Q 012216 89 ITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT--SWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 89 ~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.-|+||+||... .+--+...-+.|+++|++++++|||||+|||.|.... .+.+......+|.+|+..+..+
T Consensus 99 kavllsLGGAdg-------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~G 171 (332)
T COG3469 99 KAVLLSLGGADG-------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQG 171 (332)
T ss_pred cEEEEEccCccc-------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcC
Confidence 889999999765 2222344578999999999999999999999997542 1333467889999999998877
Q ss_pred hccCCCcceEEEEEeecCccccccc-C--CHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 012216 167 RNNSSKSQLILTAEVAYSPHSTAAA-Y--TVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWI 243 (468)
Q Consensus 167 ~~~~~~~~~~ls~a~~~~~~~~~~~-~--~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~ 243 (468)
+. +.||+|+. .|.....+ | -+.++..+.||++.+-|+-.|.. ...+..+++.- +....+.+..-+++
T Consensus 172 k~------f~itMAPE-fPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg-~w~~~~nawi~--q~nd~~kesfly~~ 241 (332)
T COG3469 172 KN------FFITMAPE-FPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDG-NWVTESNAWIA--QNNDMVKESFLYYL 241 (332)
T ss_pred Cc------eEEEecCC-CceecCCcccchHHHHHhhHHhhhhHHHhcCCCCC-CCcCccccccc--cccHHHHHhHHHHh
Confidence 65 99999843 44444333 3 25788999999999999987641 11122223221 00111111111221
Q ss_pred H----------CCCCcCceeeeccc
Q 012216 244 E----------EGLSADKMVLCLPF 258 (468)
Q Consensus 244 ~----------~g~~~~Ki~lglp~ 258 (468)
. ..+|.+|+++|||.
T Consensus 242 ~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 242 TFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred hhhhhcCcccceecccceeEEecCC
Confidence 1 23799999999987
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.38 E-value=3.3e-11 Score=111.14 Aligned_cols=226 Identities=16% Similarity=0.141 Sum_probs=136.7
Q ss_pred CcchhH-HHHHHHHHHhccCcCCCCCcEEEEEecCC----CCcCCCCCCCCCCcEEEEeeEEeeCCCceeecCCc-----
Q 012216 1 MASKII-ILVLHIFIFSESLPAGAQTLIRAGYWDSG----NGFPVSDVNSALFTHLMCGFADVNSTSYELSLSPS----- 70 (468)
Q Consensus 1 m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~----~~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~----- 70 (468)
|..+.. ++|+.|+.+.+....-+.+.-+++||..+ ..-.........++.++++|+.--+.++.+.+.-.
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 554432 23333333333336666777889999763 22223334556788899998865554444443311
Q ss_pred -c------HHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHH----------cCCC
Q 012216 71 -D------EKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARL----------YGFQ 133 (468)
Q Consensus 71 -~------~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~----------~~~D 133 (468)
+ -..+..-++.++.+ |+||||++||..+ + ..+.|.+.-+.|++.+-+.... -=+|
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~G--n----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvD 152 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNG--N----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVD 152 (568)
T ss_pred cccccccccchhhhHHHHHHhc--CeEEEEeccCccc--c----eeeccchhHHHHHHHHHHHhcCCccccCcccchhcc
Confidence 1 12344445556665 9999999999875 2 2456777888899888776543 2289
Q ss_pred eeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHH-hccccEEeecccccc
Q 012216 134 GLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSI-RQYLNWVHVMTTEYS 212 (468)
Q Consensus 134 GidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l-~~~~D~v~lm~yd~~ 212 (468)
|+|+|.|.. ....|.+|-+.||..|...+++ |.|+.|+.++......+ +.| .+-.||+.|+.|+-.
T Consensus 153 GfDF~IE~g----~~~~ysaLA~~L~~~Fa~~~r~------yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~ 219 (568)
T KOG4701|consen 153 GFDFEIEKG----TNTAYSALAKRLLEIFASDPRR------YYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNS 219 (568)
T ss_pred ceeeeeecC----CcchHHHHHHHHHHHHccCCce------EEeccCCCCCCCchhhh---hhhhccccceEEEEeecCC
Confidence 999999953 3468999999999999865544 99998865432111111 122 456899999999742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCc---eeeeccce
Q 012216 213 NPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADK---MVLCLPFY 259 (468)
Q Consensus 213 ~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~K---i~lglp~y 259 (468)
.- ... ....+..++ +...|.. .+.++| +.||||..
T Consensus 220 ~C---S~S-------sG~~Q~~fD-sW~~ya~-~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 220 TC---SGS-------SGSRQSTFD-AWVEYAE-DSAYNKNTSLFLGLPGH 257 (568)
T ss_pred Cc---ccc-------cCcccccHH-HHHHHHh-hhcccccceEEeeccCC
Confidence 11 000 011112232 2333433 467777 99999863
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.57 E-value=6.5e-07 Score=86.09 Aligned_cols=156 Identities=8% Similarity=0.029 Sum_probs=103.9
Q ss_pred HHHHHHhhCCCcEEEEEEcC-CCCCCCcccccccCC-hhhHHHHHHHHHHHHHHcCCCeeeeeccCCC-CCcchhhHHHH
Q 012216 78 FTDIVKIKNPSITTLLSIGG-GNNPNYSTYSSMASN-PSSRKSFIDSSIKIARLYGFQGLDLSWPHAN-TSWDKYNIGIL 154 (468)
Q Consensus 78 ~~~~~k~~~~~~kvllsiGg-~~~~~~~~~~~~~~~-~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~-~~~~~~~~~~~ 154 (468)
.++.+|++ |+||+-.|-= +.. ..+.+..++.+ ++.+..+++.|+++++.|||||+.||+|... .+++++.++.|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 34456766 9999987741 211 24567788888 9999999999999999999999999999887 56889999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEEEee-cCccc--cccc---CCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCC
Q 012216 155 FKEWRAAVDLEARNNSSKSQLILTAEVA-YSPHS--TAAA---YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYD 228 (468)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~-~~~~~--~~~~---~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~ 228 (468)
+++|+++++++... ..+.--=. ..... ++.. .+.+ .-+.+|.+.+ -| . | ..
T Consensus 128 ~~~L~~~~~~~~~~------~~v~WYDs~t~~G~l~wQn~Ln~~N~~-ff~~~D~~Fl-NY--~--W-~~---------- 184 (339)
T cd06547 128 LRYLKAKLHENVPG------SLVIWYDSMTEDGKLSWQNELNSKNKP-FFDVCDGIFL-NY--W--W-TE---------- 184 (339)
T ss_pred HHHHHHHHhhcCCC------cEEEEEecCCCCCccchhhhhhHHHHH-HHhhhcceeE-ec--C--C-Cc----------
Confidence 99999999975422 33321101 00000 1111 1111 1244554422 22 1 3 21
Q ss_pred CCCCCcHHHHHHHHHHCCCCcCceeeeccceeeee
Q 012216 229 PNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAW 263 (468)
Q Consensus 229 ~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~ 263 (468)
...+..++.....|..+.+|.+|+=..|+..
T Consensus 185 ----~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~ 215 (339)
T cd06547 185 ----ESLERSVQLAEGLGRSPYDVYVGVDVWGRGT 215 (339)
T ss_pred ----chHHHHHHHHHHcCCCHhHEEEEEEEEcCCc
Confidence 1345555666677899999999999998866
No 27
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.17 E-value=9.5e-07 Score=86.46 Aligned_cols=37 Identities=43% Similarity=0.773 Sum_probs=34.5
Q ss_pred CccccCHHHHHHHhcCCCcCCccccCCCccceeeecC
Q 012216 432 DLREYSLADIEVATDGFSIENKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 432 ~~~~f~~~~l~~aT~~F~~~n~IG~GgfG~VYkg~L~ 468 (468)
..+.|++++|.+||+||+++|+||+||||+||||.|+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~ 97 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS 97 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC
Confidence 4567999999999999999999999999999999984
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.15 E-value=2.2e-05 Score=75.05 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=89.6
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCC-----------------------CCcc-------hhhHHHHHHHHH
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLS-WPHAN-----------------------TSWD-------KYNIGILFKEWR 159 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD-~E~~~-----------------------~~~~-------~~~~~~~l~~lr 159 (468)
.+|+.|+-.++-+.+++++|++|||+|| +-+|. .+.| +++.+.|+++++
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999999 44542 1233 578899999999
Q ss_pred HHHHHHhhccCCCcceEEEEEeecCccc-cccc-CCHHHH--hccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcH
Q 012216 160 AAVDLEARNNSSKSQLILTAEVAYSPHS-TAAA-YTVDSI--RQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNT 235 (468)
Q Consensus 160 ~~l~~~~~~~~~~~~~~ls~a~~~~~~~-~~~~-~~~~~l--~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~ 235 (468)
+++++.+. ...+++++.+.... ...- -|.... ..++|++..|.|-.. .....+ ..
T Consensus 214 ~~ik~~kP------~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~~ 272 (311)
T PF02638_consen 214 DAIKAIKP------WVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------PY 272 (311)
T ss_pred HHHHHhCC------CCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------HH
Confidence 99998764 47888875432211 1111 244444 478999999999431 111112 45
Q ss_pred HHHHHHHHHCCCCc-Cceeeeccceee
Q 012216 236 EYGITEWIEEGLSA-DKMVLCLPFYGY 261 (468)
Q Consensus 236 ~~~v~~~~~~g~~~-~Ki~lglp~yG~ 261 (468)
+..+..|.+...+. -+|.+|+.+|-.
T Consensus 273 ~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 273 EQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 67778888754443 489999988754
No 29
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.04 E-value=1.4e-05 Score=76.12 Aligned_cols=175 Identities=12% Similarity=0.106 Sum_probs=99.1
Q ss_pred CCCcEEEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEc-CCCCCCCcccccccC-ChhhHHHHHHHH
Q 012216 46 ALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIG-GGNNPNYSTYSSMAS-NPSSRKSFIDSS 123 (468)
Q Consensus 46 ~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiG-g~~~~~~~~~~~~~~-~~~~r~~fi~~i 123 (468)
..++..+|.. .+.+.+++. ..++.+|++ |+|||-+|- .|+. ..+....++. +++....+++.+
T Consensus 27 ~yiD~fvyws------h~~i~iP~~------~widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kL 91 (311)
T PF03644_consen 27 QYIDIFVYWS------HGLITIPPA------GWIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKL 91 (311)
T ss_dssp GG-SEEEET-------TBSSE---H------HHHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHH
T ss_pred cceeeEeecc------cccccCCCc------hhHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHH
Confidence 4566666632 234555542 245567776 999996652 2221 2456788888 888999999999
Q ss_pred HHHHHHcCCCeeeeeccCCCCC-cchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecC---cccccccCCH--HHH
Q 012216 124 IKIARLYGFQGLDLSWPHANTS-WDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYS---PHSTAAAYTV--DSI 197 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~-~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~---~~~~~~~~~~--~~l 197 (468)
+++++.|||||.-|++|.+... ...+.+..|+++|++++++ ... ..|.---... .-.++....- ...
T Consensus 92 i~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~------~~v~WYDs~t~~G~l~~qn~Ln~~N~~f 164 (311)
T PF03644_consen 92 IEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPG------SEVIWYDSVTNSGRLSWQNELNDKNKPF 164 (311)
T ss_dssp HHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-------EEEEES-B-SSSSB---SSS-TTTGGG
T ss_pred HHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCC------cEEEEeecCCcCCccchHHHHHhhCcch
Confidence 9999999999999999988764 6889999999999999987 422 3333211100 0011111100 011
Q ss_pred hccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeeccceeee
Q 012216 198 RQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYA 262 (468)
Q Consensus 198 ~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~ 262 (468)
.+.+|-+.+ ||. |.. ..++.+++...+.+.+|.+|.+|+=..|+.
T Consensus 165 ~~~~d~iFl---NY~--W~~---------------~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 165 FDVCDGIFL---NYN--WNP---------------DSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp BES-SEEEE----S----SH---------------HHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred hhhcceeeE---ecC--CCc---------------ccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 233444422 111 211 146777888888899999999999999986
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.44 E-value=0.0019 Score=55.34 Aligned_cols=85 Identities=5% Similarity=0.030 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHHHHHH-cCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccc
Q 012216 112 NPSSRKSFIDSSIKIARL-YGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAA 190 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~-~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~ 190 (468)
+++..++..+.+.++-.. +...||.||+..+. ...+.|..|+++||+.|.. ++.||++.=+. +....
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~---------~~~LSIT~L~d-W~~~~ 89 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPP---------DYRLSITALPD-WLSSP 89 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCC---------CceEeeEEehh-hhcCc
Confidence 455556666666566544 36899999999774 5778999999999999974 36677764321 11111
Q ss_pred cCCHHHHhccccEEeeccc
Q 012216 191 AYTVDSIRQYLNWVHVMTT 209 (468)
Q Consensus 191 ~~~~~~l~~~~D~v~lm~y 209 (468)
. .+..+...+|.+.+|+|
T Consensus 90 ~-~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 90 D-WLNALPGVVDELVLQVY 107 (181)
T ss_pred h-hhhhHhhcCCeeEEEee
Confidence 1 37788889999999999
No 31
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.36 E-value=0.015 Score=55.29 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCCeeeeec-cCCCC----------Cc----chhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEe
Q 012216 117 KSFIDSSIKIARLYGFQGLDLSW-PHANT----------SW----DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEV 181 (468)
Q Consensus 117 ~~fi~~i~~~l~~~~~DGidiD~-E~~~~----------~~----~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (468)
....-+|+.-+.+.|||.|.||+ .+|.. .. -.+..+.||+..|++|++.+ ..||+.|
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--------v~vSaDV 194 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG--------VPVSADV 194 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC--------CCEEEEe
Confidence 34555688888899999999996 47761 11 22578999999999998765 5689988
Q ss_pred ecCcccc----cccCCHHHHhccccEEeeccccccCCCCCCCCCCCCCC
Q 012216 182 AYSPHST----AAAYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAAL 226 (468)
Q Consensus 182 ~~~~~~~----~~~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl 226 (468)
...+... ..+-+++.|++++|+|.-|-|-=| |.....|...|-
T Consensus 195 fG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 195 FGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred cccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 7543333 233589999999999999999655 544444444443
No 32
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.53 E-value=0.0042 Score=69.75 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=23.4
Q ss_pred ccCHHHHHHHhcCCCcCCccccCCCccceeeec
Q 012216 435 EYSLADIEVATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 435 ~f~~~~l~~aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
.++++++.. .+.++++||+|+||.||||+.
T Consensus 682 ~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~ 711 (968)
T PLN00113 682 SITINDILS---SLKEENVISRGKKGASYKGKS 711 (968)
T ss_pred hhhHHHHHh---hCCcccEEccCCCeeEEEEEE
Confidence 355566554 477889999999999999974
No 33
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=96.40 E-value=0.017 Score=55.41 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=71.1
Q ss_pred HHHHhhCCCcEEEEE-EcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHH
Q 012216 80 DIVKIKNPSITTLLS-IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEW 158 (468)
Q Consensus 80 ~~~k~~~~~~kvlls-iGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~l 158 (468)
+.++.+ |++|+-+ |..|.. +...-+.++.+++.-+..++.++++.+-.||||=-|+.|.-.+....+++..|++.|
T Consensus 118 n~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~L 194 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHL 194 (526)
T ss_pred chhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHH
Confidence 346666 9999976 566764 566778899999999999999999999999999999999877666778999999999
Q ss_pred HHHHHHHh
Q 012216 159 RAAVDLEA 166 (468)
Q Consensus 159 r~~l~~~~ 166 (468)
.+.+++..
T Consensus 195 t~~~~~~~ 202 (526)
T KOG2331|consen 195 TKVLHSSV 202 (526)
T ss_pred HHHHhhcC
Confidence 99998653
No 34
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=96.10 E-value=0.01 Score=58.06 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=15.1
Q ss_pred CccccCCCccceeeecC
Q 012216 452 NKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 452 n~IG~GgfG~VYkg~L~ 468 (468)
.+||+|+||.||||.|.
T Consensus 216 eli~~Grfg~V~KaqL~ 232 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLD 232 (534)
T ss_pred HHhhcCccceeehhhcc
Confidence 48999999999999873
No 35
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=93.28 E-value=0.034 Score=58.35 Aligned_cols=17 Identities=41% Similarity=0.843 Sum_probs=15.0
Q ss_pred cCCccccCCCccceeee
Q 012216 450 IENKLGEGGYGPVYKVM 466 (468)
Q Consensus 450 ~~n~IG~GgfG~VYkg~ 466 (468)
+..+||+|.||+||||.
T Consensus 700 k~kvLGsgAfGtV~kGi 716 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGI 716 (1177)
T ss_pred hhceeccccceeEEeee
Confidence 35689999999999996
No 36
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=0.62 Score=43.07 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHcCCCeeeeec-cCCCCC---------------cchhhHHHHHHHHHHHHHHHhhccCCCcceEEE
Q 012216 115 SRKSFIDSSIKIARLYGFQGLDLSW-PHANTS---------------WDKYNIGILFKEWRAAVDLEARNNSSKSQLILT 178 (468)
Q Consensus 115 ~r~~fi~~i~~~l~~~~~DGidiD~-E~~~~~---------------~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls 178 (468)
+.-++--+|++-..+.|||-|.+|+ .+|.+. +..+.+..||.--|++|. .-+|
T Consensus 193 ~~WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~-----------vpIS 261 (400)
T COG1306 193 NLWEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE-----------VPIS 261 (400)
T ss_pred hhhhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc-----------cceE
Confidence 3344556788999999999999997 466531 223456677777777765 4577
Q ss_pred EEeecC----cccccccCCHHHHhccccEEeeccccccC
Q 012216 179 AEVAYS----PHSTAAAYTVDSIRQYLNWVHVMTTEYSN 213 (468)
Q Consensus 179 ~a~~~~----~~~~~~~~~~~~l~~~~D~v~lm~yd~~~ 213 (468)
+.+... +.....+-+++.+++|||.|..|.|--|-
T Consensus 262 ~DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 262 ADIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred EEeecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 776632 22223345789999999999999997663
No 37
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.51 E-value=7.4 Score=36.35 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=107.8
Q ss_pred CCcEEEE-eeEEeeCCCc--eeecCCcc----HHHHHHHHHHHHhhCCCcEEEEEE--cCCCCCC-------------Cc
Q 012216 47 LFTHLMC-GFADVNSTSY--ELSLSPSD----EKQFSNFTDIVKIKNPSITTLLSI--GGGNNPN-------------YS 104 (468)
Q Consensus 47 ~~thii~-~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~k~~~~~~kvllsi--Gg~~~~~-------------~~ 104 (468)
..++|++ +|...+++|. .+.+++.. ...+....=.++.+. ++||..-. -++.-++ ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4677776 5555555552 24444442 233334332355544 78887432 2222111 11
Q ss_pred ccccccC-ChhhHHHHHHHHHHHHHHc-CCCeeeeec-------cCCCCC------cchhhHHHHHHHHHHHHHHHhhcc
Q 012216 105 TYSSMAS-NPSSRKSFIDSSIKIARLY-GFQGLDLSW-------PHANTS------WDKYNIGILFKEWRAAVDLEARNN 169 (468)
Q Consensus 105 ~~~~~~~-~~~~r~~fi~~i~~~l~~~-~~DGidiD~-------E~~~~~------~~~~~~~~~l~~lr~~l~~~~~~~ 169 (468)
...++-- +++. .+.|.+|-+=|..| .||||=|.- |.+... .....++.|..+|++..+....
T Consensus 109 ~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp-- 185 (294)
T PF14883_consen 109 GYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRP-- 185 (294)
T ss_pred CceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCc--
Confidence 1112111 3434 45688888888888 899998843 321110 1124678999999999887642
Q ss_pred CCCcceEEEEEeecCccccccc-----CCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 012216 170 SSKSQLILTAEVAYSPHSTAAA-----YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIE 244 (468)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~~~~~-----~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~ 244 (468)
.+...--+.+.|-....+ -++....+..||..+|+.-++.. .. .| ..++...++....
T Consensus 186 ----~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~---~~------~~WL~~Lv~~v~~ 248 (294)
T PF14883_consen 186 ----DLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AE---DP------EQWLAQLVDAVAA 248 (294)
T ss_pred ----cchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----cc---CH------HHHHHHHHHHHHh
Confidence 222222222222211111 25677777889999998776532 11 11 1367777777777
Q ss_pred CCCCcCceeeeccceeeeee
Q 012216 245 EGLSADKMVLCLPFYGYAWT 264 (468)
Q Consensus 245 ~g~~~~Ki~lglp~yG~~~~ 264 (468)
...+.+|+++-|.. ++|+
T Consensus 249 ~p~~l~KtvFELQa--~dwr 266 (294)
T PF14883_consen 249 RPGGLDKTVFELQA--VDWR 266 (294)
T ss_pred cCCcccceEEEEec--cCCc
Confidence 66668999999976 4564
No 38
>PRK12568 glycogen branching enzyme; Provisional
Probab=91.68 E-value=3.5 Score=44.16 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCC-C---------CC-------------ccccc---ccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNN-P---------NY-------------STYSS---MASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~-~---------~~-------------~~~~~---~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ +++|+|-+--... . +. ..|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 567899999999988 9999987511000 0 00 01211 2357788999999999
Q ss_pred HHHHHcCCCeeeeec--------------cCCCC-CcchhhH--HHHHHHHHHHHHHHhh
Q 012216 125 KIARLYGFQGLDLSW--------------PHANT-SWDKYNI--GILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGidiD~--------------E~~~~-~~~~~~~--~~~l~~lr~~l~~~~~ 167 (468)
-|+++|++||+-+|- |+..+ ...++++ ..|+++|++.+++...
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 999999999999992 11111 1112333 6799999999987653
No 39
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.22 E-value=1.3 Score=42.36 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeec----cCCCC-----CcchhhHHHHHHHHHHHHHHHhh
Q 012216 112 NPSSRKSFIDSSIKIARLYGFQGLDLSW----PHANT-----SWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~~~~DGidiD~----E~~~~-----~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
+++-|+-+.+. ++.+.+.||||+.+|. ++... +...+...+|+++|.+..++...
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 55666666665 6777888999999994 22111 23346788999999888887653
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=0.52 Score=46.46 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=61.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeecc--CCCC-------------------C--------cchhhHHHHHHHHHHHH
Q 012216 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWP--HANT-------------------S--------WDKYNIGILFKEWRAAV 162 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~~~~DGidiD~E--~~~~-------------------~--------~~~~~~~~~l~~lr~~l 162 (468)
.++.|+=..+-+++.+++|..|||.+|-- +|.. + .-+++.++|++.+...+
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35667777778899999999999999932 2221 0 12457889999999999
Q ss_pred HHHhhccCCCcceEEEEEe-ec-CcccccccC---CHHHH--hccccEEeecccc
Q 012216 163 DLEARNNSSKSQLILTAEV-AY-SPHSTAAAY---TVDSI--RQYLNWVHVMTTE 210 (468)
Q Consensus 163 ~~~~~~~~~~~~~~ls~a~-~~-~~~~~~~~~---~~~~l--~~~~D~v~lm~yd 210 (468)
++.. +...++++. +. ........+ |.... ..++|++.+|.|=
T Consensus 260 KavK------p~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 260 KAVK------PNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred HhhC------CCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 9765 448888886 31 111111111 22221 5789999999993
No 41
>PLN02960 alpha-amylase
Probab=90.90 E-value=4.2 Score=44.14 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEc----CCC--------CCCC------------ccccc---ccCChhhHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIG----GGN--------NPNY------------STYSS---MASNPSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiG----g~~--------~~~~------------~~~~~---~~~~~~~r~~fi~~i 123 (468)
....+..+++.+|++ +++|+|-+- +.+ ++.. ..|.. -..++..|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 567889999989888 899999761 000 0000 01111 135688999999999
Q ss_pred HHHHHHcCCCeeeeecc-------------------CCCCCcchhhHHHHHHHHHHHHHHHhh
Q 012216 124 IKIARLYGFQGLDLSWP-------------------HANTSWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E-------------------~~~~~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
.-||++|++||+-+|=- ++.. .....-..||++|.+.+++..+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~~P 603 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQLHP 603 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhhCC
Confidence 99999999999999811 1211 1123457899999998886543
No 42
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=90.67 E-value=0.095 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.738 Sum_probs=20.9
Q ss_pred HhcCCCcCCccccCCCccceeeec
Q 012216 444 ATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
.+++|...++||+|+||+||||.+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 366799999999999999999963
No 43
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=90.65 E-value=2.2 Score=46.73 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-------cCCCCCC------Cccc---------c-------cccCChhhHHHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSI-------GGGNNPN------YSTY---------S-------SMASNPSSRKSFIDSS 123 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-------Gg~~~~~------~~~~---------~-------~~~~~~~~r~~fi~~i 123 (468)
..++++++.+|++ |++|++-+ +|....+ +..| . ....++..|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3677888888887 99999865 2211100 0000 0 1123567788899999
Q ss_pred HHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 124 IKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.-|+++|++||+-||.-.-.. ..|++++++++++..
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~~-------~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHHP-------KAQMLAAREAIKALT 517 (898)
T ss_pred HHHHHHcCCCEEEEechhhCC-------HHHHHHHHHHHHHhC
Confidence 999999999999999663322 568888888887764
No 44
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.57 E-value=2.9 Score=39.68 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCc-----
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSW----- 146 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~----- 146 (468)
...+.+.+...+...++..++++|+|.. + +.+ ...++.+.++|+|+|+|++--|....
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~-------------~---~~~-~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~ 144 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSS-------------K---EDY-VELARKIERAGAKALELNLSCPNVGGGRQLG 144 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCC-------------H---HHH-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccc
Confidence 3344443333333335788999999843 1 122 23456667779999999998765321
Q ss_pred -chhhHHHHHHHHHHHH
Q 012216 147 -DKYNIGILFKEWRAAV 162 (468)
Q Consensus 147 -~~~~~~~~l~~lr~~l 162 (468)
+.+...++++++|+.+
T Consensus 145 ~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 145 QDPEAVANLLKAVKAAV 161 (289)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 3344556677776654
No 45
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=90.13 E-value=0.17 Score=53.08 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.8
Q ss_pred CCccccCCCccceeeecC
Q 012216 451 ENKLGEGGYGPVYKVMYR 468 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~L~ 468 (468)
+.+||.|-||.||+|.|.
T Consensus 634 e~VIGaGEFGEVc~GrLk 651 (996)
T KOG0196|consen 634 EKVIGAGEFGEVCSGRLK 651 (996)
T ss_pred EEEEecccccceeccccc
Confidence 568999999999999873
No 46
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=90.10 E-value=3 Score=44.19 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEc-----CCCC-C----CCccc------------c----c-ccCChhhHHHHHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIG-----GGNN-P----NYSTY------------S----S-MASNPSSRKSFIDSSIK 125 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiG-----g~~~-~----~~~~~------------~----~-~~~~~~~r~~fi~~i~~ 125 (468)
..++.+++.+|++ |++|+|-+- +... + .+..| + . -..++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5788999989888 999998751 1000 0 00000 0 0 12367788899999999
Q ss_pred HHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 126 IARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 126 ~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
|++++++||+-+|.-.... ..|++++++++++..
T Consensus 307 W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~~~~~~~ 340 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIHD-------IETMNEIRKALNKID 340 (605)
T ss_pred HHHHcCCCEEEEechhcCC-------HHHHHHHHHHHHhhC
Confidence 9999999999999552221 347888888887654
No 47
>PRK12313 glycogen branching enzyme; Provisional
Probab=89.78 E-value=3.6 Score=43.89 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCC-CCCC---------C-------------cccc---cccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGG-NNPN---------Y-------------STYS---SMASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~-~~~~---------~-------------~~~~---~~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ |++|+|-+--. ...+ + ..|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 567899999999988 99999875110 0000 0 0010 01246888999999999
Q ss_pred HHHHHcCCCeeeeecc-C------------CC----CCcchhhHHHHHHHHHHHHHHHhh
Q 012216 125 KIARLYGFQGLDLSWP-H------------AN----TSWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGidiD~E-~------------~~----~~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
-|+++|++||+-+|-- . .. ...+. .=..|++++++.+++..+
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~p 354 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEHP 354 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHCC
Confidence 9999999999999921 0 00 00111 236899999999987653
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=89.68 E-value=2 Score=35.45 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEE--EEcCCCC------C-----------------CCcccccccCChhhHHHHHHHHHHH
Q 012216 72 EKQFSNFTDIVKIKNPSITTLL--SIGGGNN------P-----------------NYSTYSSMASNPSSRKSFIDSSIKI 126 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvll--siGg~~~------~-----------------~~~~~~~~~~~~~~r~~fi~~i~~~ 126 (468)
...+.++++.+|++ |++|++ +++ +.. | ....+...--|...++.++..|.++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 45778889889988 888885 443 211 0 0112555666778898889999999
Q ss_pred HHHcCCCeeeeec
Q 012216 127 ARLYGFQGLDLSW 139 (468)
Q Consensus 127 l~~~~~DGidiD~ 139 (468)
+++|++|||-+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 9999999999986
No 49
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=89.02 E-value=3 Score=43.48 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCC-CCCCCc-------ccc----------cccCCh---hhHHHHHHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGG-NNPNYS-------TYS----------SMASNP---SSRKSFIDSSIKIARL 129 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~-~~~~~~-------~~~----------~~~~~~---~~r~~fi~~i~~~l~~ 129 (468)
....++.+++.+|++ |++|+|-+--. ..++.. .|. --..++ ..|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 567889999989888 99999875211 000000 010 012345 8889999999999999
Q ss_pred cCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 130 YGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 130 ~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
|++||+-+|--.... + ..-..|++++++.+++..
T Consensus 236 ~~iDGfR~D~~~~~~--~-~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 236 YHFDGLRLDAVHAIA--D-TSAKHILEELAREVHELA 269 (542)
T ss_pred hCCcEEEEeCHHHhc--c-ccHHHHHHHHHHHHHHHC
Confidence 999999999532111 1 112579999999998765
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=87.86 E-value=6.9 Score=41.52 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCC-CCCC---------C-------------ccccc---ccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGG-NNPN---------Y-------------STYSS---MASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~-~~~~---------~-------------~~~~~---~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ |++|+|-+--. ...+ . ..|.. -..++..|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567889999989988 99999875210 0000 0 00110 1256889999999999
Q ss_pred HHHHHcCCCeeeeecc-CC-------------CCC-c--chhhHHHHHHHHHHHHHHHhh
Q 012216 125 KIARLYGFQGLDLSWP-HA-------------NTS-W--DKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGidiD~E-~~-------------~~~-~--~~~~~~~~l~~lr~~l~~~~~ 167 (468)
-|+++|++||+-+|-- .. ... . ....=..|++++++.+++..+
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p 341 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFP 341 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999952 11 000 0 011236799999999987653
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.71 E-value=8.3 Score=41.83 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------C-------------cccc---cccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGG-GNNPN---------Y-------------STYS---SMASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg-~~~~~---------~-------------~~~~---~~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ |++|+|-+-- ....+ + ..|. --..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 567889999999988 9999987511 00000 0 0111 13357889999999999
Q ss_pred HHHHHcCCCeeeeec-cCC--------------CC--CcchhhHHHHHHHHHHHHHHHhh
Q 012216 125 KIARLYGFQGLDLSW-PHA--------------NT--SWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGidiD~-E~~--------------~~--~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
-|++++++||+-+|- ... .. ..+...-..|++++++.+++..+
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p 450 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFP 450 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999993 111 00 01112346899999999987653
No 52
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.29 E-value=12 Score=42.77 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcC-------CC-----C------CCC-----ccccc---ccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGG-------GN-----N------PNY-----STYSS---MASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg-------~~-----~------~~~-----~~~~~---~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ |++|+|-+-- |. . .+. ..|.. -..+++.|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 577899999999888 9999986411 00 0 000 01111 1356788999999999
Q ss_pred HHHHHcCCCeeeeecc-C--------------CCCCcchhh--HHHHHHHHHHHHHHHh
Q 012216 125 KIARLYGFQGLDLSWP-H--------------ANTSWDKYN--IGILFKEWRAAVDLEA 166 (468)
Q Consensus 125 ~~l~~~~~DGidiD~E-~--------------~~~~~~~~~--~~~~l~~lr~~l~~~~ 166 (468)
-|+++|++||+-+|-- . |.....++| =+.|++++.+.+++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~ 949 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTH 949 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 9999999999999852 1 000011122 3689999999998754
No 53
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.01 E-value=11 Score=40.17 Aligned_cols=95 Identities=11% Similarity=0.095 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcC----CCC--------------CC-C----ccccc---ccCChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGG----GNN--------------PN-Y----STYSS---MASNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg----~~~--------------~~-~----~~~~~---~~~~~~~r~~fi~~i~ 124 (468)
....++.+++.+|++ +++|+|-+-- ... .+ . ..|.. -..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 567889999989888 9999987511 000 00 0 01111 1247889999999999
Q ss_pred HHHHHcCCCeeeeec-cCC--CC------------CcchhhHHHHHHHHHHHHHHHhh
Q 012216 125 KIARLYGFQGLDLSW-PHA--NT------------SWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 125 ~~l~~~~~DGidiD~-E~~--~~------------~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
-|++++++||+-+|- ... .+ ......=..|+++|++.+++..+
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCC
Confidence 999999999999993 221 00 01112346799999999987653
No 54
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=84.04 E-value=0.35 Score=50.72 Aligned_cols=24 Identities=46% Similarity=0.844 Sum_probs=21.1
Q ss_pred HhcCCCcCCccccCCCccceeeec
Q 012216 444 ATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
..++|...++||+|+||.||+|.+
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~ 153 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASL 153 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEE
Confidence 567788889999999999999975
No 55
>PF15102 TMEM154: TMEM154 protein family
Probab=83.51 E-value=1.6 Score=36.17 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=6.4
Q ss_pred ccccCHHHHHH
Q 012216 433 LREYSLADIEV 443 (468)
Q Consensus 433 ~~~f~~~~l~~ 443 (468)
...+.++||.+
T Consensus 122 vmeiEmeeldk 132 (146)
T PF15102_consen 122 VMEIEMEELDK 132 (146)
T ss_pred hhhhhHHHHHh
Confidence 34566677754
No 56
>PLN03244 alpha-amylase; Provisional
Probab=82.73 E-value=17 Score=39.12 Aligned_cols=93 Identities=10% Similarity=0.012 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCC-C-----------CC-cccc--------------cccCChhhHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNN-P-----------NY-STYS--------------SMASNPSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~-~-----------~~-~~~~--------------~~~~~~~~r~~fi~~i 123 (468)
.+..++.+++.+|++ |++|+|-+--... + +. ..|. --..+++.|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 567889999989987 9999987521000 0 00 0011 1123567888999999
Q ss_pred HHHHHHcCCCeeeeecc-------------------CCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 124 IKIARLYGFQGLDLSWP-------------------HANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E-------------------~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.-|+++|++||+-+|=- ++....+ ..=+.||+.+.+.+++..
T Consensus 517 ~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d-~dAv~fL~laN~~ih~~~ 577 (872)
T PLN03244 517 NWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVD-KDALMYLILANEILHALH 577 (872)
T ss_pred HHHHHHhCcCcceeecchhheeeccccccccCCccccccccCC-chHHHHHHHHHHHHHHhC
Confidence 99999999999999811 1111111 233567777777777654
No 57
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=82.59 E-value=12 Score=42.39 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCC-CC-------CCcccc----------------cccCChhhHHHHHHHHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGN-NP-------NYSTYS----------------SMASNPSSRKSFIDSSIKIAR 128 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~-~~-------~~~~~~----------------~~~~~~~~r~~fi~~i~~~l~ 128 (468)
..++.+++.+|++ |++|+|-+==.. .. ....|. .-..++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688899888888 999998752100 00 000000 011346778889999999999
Q ss_pred HcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 129 LYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 129 ~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
+|++||+-||.-.- -+ ..++++++.++++..
T Consensus 633 ey~VDGFRfDl~g~---~d----~~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HD----AASIEIAYKEAKAIN 663 (1111)
T ss_pred hcCCcEEEEecccc---CC----HHHHHHHHHHHHHhC
Confidence 99999999996521 22 235666666665543
No 58
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=82.42 E-value=15 Score=39.68 Aligned_cols=94 Identities=10% Similarity=0.060 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCC-------------CCCCCcc-----------ccc-c--cCChhhHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGG-------------NNPNYST-----------YSS-M--ASNPSSRKSFIDSS 123 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~-------------~~~~~~~-----------~~~-~--~~~~~~r~~fi~~i 123 (468)
....++.+++.+|++ |++|+|-+--. ....... +.. . ..+++.|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 567789999989887 99999875110 0000000 100 1 23567888999999
Q ss_pred HHHHHHcCCCeeeeecc-------------CCC-------CCcchhhHHHHHHHHHHHHHHHhh
Q 012216 124 IKIARLYGFQGLDLSWP-------------HAN-------TSWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E-------------~~~-------~~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
.-|+++|++||+-+|-- +.+ ...+. .=+.||+++.+.+++...
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~-~a~~fL~~~N~~i~~~~p 438 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDV-DAVVYLMLANDLLHGLYP 438 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccCh-HHHHHHHHHHHHHHHhCC
Confidence 99999999999999821 111 00122 236688999888887653
No 59
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.94 E-value=28 Score=34.10 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=44.8
Q ss_pred CcEEEEeeEEeeCCCc----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc--------------cc
Q 012216 48 FTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSIG--GGNNPNYS--------------TY 106 (468)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsiG--g~~~~~~~--------------~~ 106 (468)
.--||.....+++.+. .+.+ .+...+.++++.+.+|+. +.|+++-+. |... ... ..
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~-~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYA-YHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCC-CCCCCcCCCCCCCCCCCCC
Confidence 4445555555655431 1112 122345667777777776 888888772 2211 000 00
Q ss_pred ccccCC---hhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012216 107 SSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 107 ~~~~~~---~~~r~~fi~~i~~~l~~~~~DGidiD~ 139 (468)
...++. .+..+.|++... .+++-|||||+|..
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~-~a~~aGfDgVeih~ 158 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAA-LAREAGYDGVEIMG 158 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEec
Confidence 011111 123455555444 44557999999976
No 60
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=80.15 E-value=54 Score=35.03 Aligned_cols=199 Identities=12% Similarity=0.078 Sum_probs=106.1
Q ss_pred CCCcEEEE-eeEEeeCCCc--eeecCCcc----HHHHHHHHHHHHhhCCCcEEEE--EEcCCCCCCC-------------
Q 012216 46 ALFTHLMC-GFADVNSTSY--ELSLSPSD----EKQFSNFTDIVKIKNPSITTLL--SIGGGNNPNY------------- 103 (468)
Q Consensus 46 ~~~thii~-~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~k~~~~~~kvll--siGg~~~~~~------------- 103 (468)
-..+||.. +|+..+++|. .+.+++.. ...|.++.=.++.+. ++||.. -+-++..+.+
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 34888887 6766766652 24555442 234444422366654 788873 2333321000
Q ss_pred -----cccccccC-ChhhHHHHHHHHHHHHHHc-CCCeeeeeccCCCC----------------------------Cc--
Q 012216 104 -----STYSSMAS-NPSSRKSFIDSSIKIARLY-GFQGLDLSWPHANT----------------------------SW-- 146 (468)
Q Consensus 104 -----~~~~~~~~-~~~~r~~fi~~i~~~l~~~-~~DGidiD~E~~~~----------------------------~~-- 146 (468)
..+.++-- +++ -.+.|.+|-+=|..| .||||=++-+-..+ ++
T Consensus 425 ~~~~~~~y~rlspf~~~-~~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPE-VRQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHH-HHHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 01111111 232 346788888888887 89999886531110 00
Q ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccccc-----CCHHHHhccccEEeeccccccCCC
Q 012216 147 ------DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA-----YTVDSIRQYLNWVHVMTTEYSNPM 215 (468)
Q Consensus 147 ------~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~-----~~~~~l~~~~D~v~lm~yd~~~~~ 215 (468)
....++.|-.+|++.+++... +.+...-.+.+.+-....+ -++..+.+..||+.+|+|-+...
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~-----p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~- 577 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRG-----PQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEK- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----ccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhc-
Confidence 123456888899888876431 1222222222222111111 25678888999999999976532
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHCCCCcCceeeeccceeeeee
Q 012216 216 WTNFTGAQAALYDPNSVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWT 264 (468)
Q Consensus 216 ~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~~ 264 (468)
...+. ...+....++.+.+.-...+|+++-|.. ++|+
T Consensus 578 ---~~~~~-------~~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 578 ---VPLSE-------SNEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred ---ccccc-------HHHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 11111 1124555555555443457899999875 4453
No 61
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=79.69 E-value=0.81 Score=33.53 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=12.1
Q ss_pred ccCHHHHHHHhcCCCc
Q 012216 435 EYSLADIEVATDGFSI 450 (468)
Q Consensus 435 ~f~~~~l~~aT~~F~~ 450 (468)
.+||||-..|-..|..
T Consensus 56 P~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAK 71 (75)
T ss_dssp GGGSSSHHHHHHHCSS
T ss_pred cccccCHHHHHHHHHh
Confidence 4778888888877754
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=79.10 E-value=3.9 Score=42.37 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeecc--------CCCCC--cchhhHHHHHHHHHHHHH
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWP--------HANTS--WDKYNIGILFKEWRAAVD 163 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E--------~~~~~--~~~~~~~~~l~~lr~~l~ 163 (468)
.|+.-|+-++++..+.++..||||+.||=- +.+.+ .-...|..||+++++++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 467788999999999999999999999932 22221 125689999999999984
No 63
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=79.08 E-value=0.94 Score=37.67 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=6.5
Q ss_pred eeeeehhhhhHHHHH
Q 012216 377 LLWAIVLPITATCIL 391 (468)
Q Consensus 377 ~~~~i~~~~~~~~~~ 391 (468)
.++.+++++++++++
T Consensus 50 IVIGvVVGVGg~ill 64 (154)
T PF04478_consen 50 IVIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEEecccHHHHH
Confidence 344444444443333
No 64
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=78.97 E-value=0.83 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.613 Sum_probs=18.8
Q ss_pred ccCHHHHHHHhcCCCcCCccccCCCccceeee
Q 012216 435 EYSLADIEVATDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 435 ~f~~~~l~~aT~~F~~~n~IG~GgfG~VYkg~ 466 (468)
.+.++|++- ...||+|.||+||||.
T Consensus 388 eIp~~ev~l-------~~rIGsGsFGtV~Rg~ 412 (678)
T KOG0193|consen 388 EIPPEEVLL-------GERIGSGSFGTVYRGR 412 (678)
T ss_pred ccCHHHhhc-------cceeccccccceeecc
Confidence 355566543 3589999999999996
No 65
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.79 E-value=19 Score=38.17 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcC----CC----------------CCCCc--------------ccc---c----c
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGG----GN----------------NPNYS--------------TYS---S----M 109 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg----~~----------------~~~~~--------------~~~---~----~ 109 (468)
+.+.+.++++.+|++ |+||++-+-- .. .+++. .|. . -
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567899999989988 9999986521 00 00000 111 0 1
Q ss_pred cCChhhHHHHHH---H-HHHHHHH-cCCCeeeeeccCCC-CCcchhhHHHHHHHHHHHHHHHhh
Q 012216 110 ASNPSSRKSFID---S-SIKIARL-YGFQGLDLSWPHAN-TSWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 110 ~~~~~~r~~fi~---~-i~~~l~~-~~~DGidiD~E~~~-~~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
..|++.|+.+++ + +..|+++ +|+||.-||--.-. .......-..|++++|+++++.+.
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p 365 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP 365 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC
Confidence 246788888886 3 4558886 89999999954211 111112245799999999987653
No 66
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=78.19 E-value=45 Score=32.52 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=47.3
Q ss_pred CcEEEEeeEEeeCCC----ceeecC-CccHHHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc--cc-----cc-----
Q 012216 48 FTHLMCGFADVNSTS----YELSLS-PSDEKQFSNFTDIVKIKNPSITTLLSIG--GGNNPNYS--TY-----SS----- 108 (468)
Q Consensus 48 ~thii~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~k~~~~~~kvllsiG--g~~~~~~~--~~-----~~----- 108 (468)
.--||-....+++.+ +.+.+. +...+.++++++.+|++ +.|+++-|. |... ... .. +.
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCC
Confidence 444555656666543 112222 22345777888888887 788887763 3221 000 00 00
Q ss_pred ------ccCC---hhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012216 109 ------MASN---PSSRKSFIDSSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 109 ------~~~~---~~~r~~fi~~i~~~l~~~~~DGidiD~E 140 (468)
-++. .+..+.|++... .+.+-|||||+|+.-
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~a 163 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAA 163 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccc
Confidence 0110 234456665544 445679999999983
No 67
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.96 E-value=36 Score=33.09 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCCc---cc-----------------ccccCCh---hhHHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSI--GGGNNPNYS---TY-----------------SSMASNP---SSRKSFIDSSIK 125 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi--Gg~~~~~~~---~~-----------------~~~~~~~---~~r~~fi~~i~~ 125 (468)
.-+.++++.+.+|++ +.|+++-| +|....... .+ ...++.+ +..+.|++.. +
T Consensus 80 ~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA-~ 156 (338)
T cd04733 80 DLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA-R 156 (338)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-H
Confidence 446677777778877 78888765 232210000 00 0111111 2345555544 4
Q ss_pred HHHHcCCCeeeeeccC
Q 012216 126 IARLYGFQGLDLSWPH 141 (468)
Q Consensus 126 ~l~~~~~DGidiD~E~ 141 (468)
.+++.|||||+|+--+
T Consensus 157 ra~~aGfDgVeih~a~ 172 (338)
T cd04733 157 LAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHcCCCEEEEchhh
Confidence 5677899999998654
No 68
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=76.81 E-value=15 Score=33.29 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=38.7
Q ss_pred HHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------Ccchhh
Q 012216 82 VKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYN 150 (468)
Q Consensus 82 ~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~ 150 (468)
......+..++++|+|... +.|++ .++.+.+.|||||+|+.-.|.. ..+...
T Consensus 48 ~~~~~~~~p~~~qi~g~~~----------------~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~ 110 (231)
T cd02801 48 LTRNPEERPLIVQLGGSDP----------------ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL 110 (231)
T ss_pred hccCccCCCEEEEEcCCCH----------------HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHH
Confidence 3345667889999987431 23333 4445566899999999765531 012334
Q ss_pred HHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAV 162 (468)
Q Consensus 151 ~~~~l~~lr~~l 162 (468)
..++++++|+..
T Consensus 111 ~~eii~~v~~~~ 122 (231)
T cd02801 111 VAEIVRAVREAV 122 (231)
T ss_pred HHHHHHHHHHhc
Confidence 456666666554
No 69
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=76.14 E-value=14 Score=39.41 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC------------------------------------cchhhHHHHH
Q 012216 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS------------------------------------WDKYNIGILF 155 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~------------------------------------~~~~~~~~~l 155 (468)
+++.|+...+-..++.+.|.+|||-+|-+-..+. .....++.|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566655555555666667999999986532210 0112456888
Q ss_pred HHHHHHHHHHhhccCCCcceEEEEEeecCcccccc-----cCCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCC
Q 012216 156 KEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAA-----AYTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPN 230 (468)
Q Consensus 156 ~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~ 230 (468)
.+|++.+++... +.+...--+.+.+-.... +-++....+..||+.+|+.-|... ...+.+
T Consensus 519 ~~l~~~v~~~~~-----~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~------ 583 (671)
T PRK14582 519 LELSARVKAIRG-----PQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS------ 583 (671)
T ss_pred HHHHHHHHhhcC-----ccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH------
Confidence 888888876431 122222222222211111 125677788899999999655422 111111
Q ss_pred CCCcHHHHHHHHHHCCCCcCceeeeccceeeeee
Q 012216 231 SVSNTEYGITEWIEEGLSADKMVLCLPFYGYAWT 264 (468)
Q Consensus 231 ~~~~~~~~v~~~~~~g~~~~Ki~lglp~yG~~~~ 264 (468)
..+....++.+.+.-...+|+|+-|.. ++|+
T Consensus 584 -~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 -DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred -HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 125666666666544567999999876 4453
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.45 E-value=2.1 Score=34.55 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=5.8
Q ss_pred eeehhhhhHHHHHH
Q 012216 379 WAIVLPITATCILL 392 (468)
Q Consensus 379 ~~i~~~~~~~~~~~ 392 (468)
..|+++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 67 IGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 33444444444333
No 71
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=74.24 E-value=6 Score=29.24 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=32.2
Q ss_pred cCCCCCCCcccccccCC-hhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012216 96 GGGNNPNYSTYSSMASN-PSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 96 Gg~~~~~~~~~~~~~~~-~~~r~~fi~~i~~~l~~~~~DGidiD~ 139 (468)
|-|.. ....+.....+ ++.|+.+++.+++.+..-.+|||-+|-
T Consensus 32 ~~W~~-~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPG-YPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCC-CCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 34443 23344444445 899999999999999988999999984
No 72
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=73.36 E-value=5.6 Score=38.82 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.9
Q ss_pred cCCCcCCccccCCCccceeeec
Q 012216 446 DGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 446 ~~F~~~n~IG~GgfG~VYkg~L 467 (468)
..|....++-+|.||.||+|.+
T Consensus 284 ~Rv~l~~llqEGtFGri~~gI~ 305 (563)
T KOG1024|consen 284 CRVRLSCLLQEGTFGRIYRGIW 305 (563)
T ss_pred hheechhhhhcCchhheeeeee
Confidence 3366677899999999999964
No 73
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=73.27 E-value=29 Score=34.11 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcC----------CCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGG----------GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg----------~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
..-+.|.+.+|++ ++..++++-- ... +...-..-+ .++..+.|+.=+++.++.+.=.||.|++-.|
T Consensus 104 ~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~-g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP 179 (384)
T PF14587_consen 104 AGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSAS-GGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISP 179 (384)
T ss_dssp HHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB--S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred HHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCC-CCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCC
Confidence 3445577777777 8888887632 110 000011222 3567889999888888888778999987544
Q ss_pred CC--------------CcchhhHHHHHHHHHHHHHHHhhc
Q 012216 143 NT--------------SWDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 143 ~~--------------~~~~~~~~~~l~~lr~~l~~~~~~ 168 (468)
.+ ..+.+....|+++|+.+|.+.+..
T Consensus 180 ~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~ 219 (384)
T PF14587_consen 180 FNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS 219 (384)
T ss_dssp -S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S
T ss_pred cCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 32 124456789999999999998854
No 74
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=71.65 E-value=35 Score=33.82 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT 144 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~ 144 (468)
.+.+.+.+..+|++.|++.++.||.|... .+.|. .+++.+++.|.|+++|++--|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~~~~--------------~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN--KDAWE--------------EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC--HHHHH--------------HHHHHHHhcCCCEEEEECCCCCC
Confidence 34444444557777788999999955221 22222 24455677899999999987764
No 75
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=71.59 E-value=9.4 Score=40.09 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCcEEEEE---EcCCCCCCCcccccccCChhhHHHHHHHHHHHH----HHcCCCeeeeeccCCCCCcchh
Q 012216 77 NFTDIVKIKNPSITTLLS---IGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIA----RLYGFQGLDLSWPHANTSWDKY 149 (468)
Q Consensus 77 ~~~~~~k~~~~~~kvlls---iGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l----~~~~~DGidiD~E~~~~~~~~~ 149 (468)
.+++.+|++||++|+.+- .-||-. + .+..-..+++.... -+++|| +.| |++|||-.+-+ ++.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~-~--g~~~~~~~~~~~a~---Y~~~wl~ga~~~~---gl~idYvg~~N--Er~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG-N--GWNWPYDNPQLTAY---YVVSWLLGAKKTH---GLDIDYVGIWN--ERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG-T--TSS-TTSSHHHHHH---HHHHHHHHHHHHH--------EE-S-T--TS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc-C--CCCCcccchhhhhH---HHHHHHHHHHHHh---CCCceEechhh--ccC
Confidence 456789999999998753 334432 1 11111122222222 234444 555 55677665422 333
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 012216 150 NIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 150 ~~~~~l~~lr~~l~~~~~~ 168 (468)
.=...++.||..|++.+-+
T Consensus 185 ~~~~~ik~lr~~l~~~gy~ 203 (669)
T PF02057_consen 185 FDVNYIKWLRKALNSNGYN 203 (669)
T ss_dssp --HHHHHHHHHHHHHTT-T
T ss_pred CChhHHHHHHHHHhhcccc
Confidence 2357889999999987643
No 76
>PLN02877 alpha-amylase/limit dextrinase
Probab=70.58 E-value=29 Score=38.57 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEE-------cCCCCCCC-------ccccc----------------ccCChhhHHHHHHHH
Q 012216 74 QFSNFTDIVKIKNPSITTLLSI-------GGGNNPNY-------STYSS----------------MASNPSSRKSFIDSS 123 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsi-------Gg~~~~~~-------~~~~~----------------~~~~~~~r~~fi~~i 123 (468)
.++.+++.+|++ +++|++-+ +|.....+ ..|.. ...++..|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478888888877 99999875 11100000 00110 112245678889999
Q ss_pred HHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 012216 124 IKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~ 165 (468)
.-|+++|++||.-+|.-.... ...+++.+++|++.
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~-------~~tm~~~~~~L~~i 579 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLM-------KRTMVRAKDALQSL 579 (970)
T ss_pred HHHHHHhCCCEEEEEcccccc-------HHHHHHHHHHHHHH
Confidence 999999999999999775433 22455555555554
No 77
>PTZ00284 protein kinase; Provisional
Probab=69.36 E-value=1 Score=46.10 Aligned_cols=29 Identities=41% Similarity=0.644 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCcCCccccCCCccceeeec
Q 012216 439 ADIEVATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 439 ~~l~~aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
+++...+++|....+||+|+||+||+|..
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~ 150 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWD 150 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEE
Confidence 34444567787788999999999999863
No 78
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=67.88 E-value=40 Score=32.10 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC-------cchhhHHHHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWPHANTS-------WDKYNIGILFKEWR 159 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGidiD~E~~~~~-------~~~~~~~~~l~~lr 159 (468)
+..++++|+|.+ .+.|++ .++.++++| +|||+|+.--|... .+.+...++++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 678999998732 234443 455568888 99999988555421 22344555666666
Q ss_pred HHH
Q 012216 160 AAV 162 (468)
Q Consensus 160 ~~l 162 (468)
+..
T Consensus 154 ~~~ 156 (301)
T PRK07259 154 EVV 156 (301)
T ss_pred Hhc
Confidence 554
No 79
>PRK03995 hypothetical protein; Provisional
Probab=67.82 E-value=14 Score=34.39 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=43.8
Q ss_pred hCCCcEEEEEEcCCCCCCCcccccccC-----------ChhhHHHHHHHHHHHHHHc--CCCeeeeeccCCCCCcchhhH
Q 012216 85 KNPSITTLLSIGGGNNPNYSTYSSMAS-----------NPSSRKSFIDSSIKIARLY--GFQGLDLSWPHANTSWDKYNI 151 (468)
Q Consensus 85 ~~~~~kvllsiGg~~~~~~~~~~~~~~-----------~~~~r~~fi~~i~~~l~~~--~~DGidiD~E~~~~~~~~~~~ 151 (468)
.....++++.|||.-. ...|.+++. +-..-.-=-+.+.+.+.+. ++|.+-|||....+ .++..+
T Consensus 177 ~~~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i 253 (267)
T PRK03995 177 EYEKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERI 253 (267)
T ss_pred cccCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHH
Confidence 3357899999999776 444443332 1111000112355566664 78999999987665 777777
Q ss_pred HHHHHHH
Q 012216 152 GILFKEW 158 (468)
Q Consensus 152 ~~~l~~l 158 (468)
..+++++
T Consensus 254 ~~~le~~ 260 (267)
T PRK03995 254 IEFLEEL 260 (267)
T ss_pred HHHHHHC
Confidence 7777664
No 80
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.49 E-value=4.5 Score=40.04 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=14.1
Q ss_pred CCccccCCCccceeee
Q 012216 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~ 466 (468)
...||+|.||.|.||.
T Consensus 216 ~e~IGkGRyGEVwrG~ 231 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGR 231 (513)
T ss_pred EEEecCccccceeecc
Confidence 4689999999999985
No 81
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.36 E-value=45 Score=31.67 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC-------cchhhHHHHHHHHH
Q 012216 87 PSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS-------WDKYNIGILFKEWR 159 (468)
Q Consensus 87 ~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~-------~~~~~~~~~l~~lr 159 (468)
.+.+++++|+|.. .+.|+ ..++.+++.|+|+|+|++--|... .+.+.+.++++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~-~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFV-EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHH-HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 4688999998732 23444 355566778999999998766531 22234445566665
Q ss_pred HHH
Q 012216 160 AAV 162 (468)
Q Consensus 160 ~~l 162 (468)
+..
T Consensus 151 ~~~ 153 (296)
T cd04740 151 KAT 153 (296)
T ss_pred hcc
Confidence 544
No 82
>PRK03705 glycogen debranching enzyme; Provisional
Probab=66.48 E-value=24 Score=37.69 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcC----C---CCC-------CCc------------ccc-----cccCChhhHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGG----G---NNP-------NYS------------TYS-----SMASNPSSRKSFID 121 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg----~---~~~-------~~~------------~~~-----~~~~~~~~r~~fi~ 121 (468)
..++.+++.+|++ |++|+|-+-= . ..+ ++. .++ --..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688899889887 9999987511 0 000 000 010 01246788999999
Q ss_pred HHHHHHHHcCCCeeeeecc
Q 012216 122 SSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E 140 (468)
++.-|+++|++||+-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999964
No 83
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=66.15 E-value=12 Score=36.23 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCcEEEEEE-------cCCCCCCCcccccccC-ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-Ccc
Q 012216 77 NFTDIVKIKNPSITTLLSI-------GGGNNPNYSTYSSMAS-NPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-SWD 147 (468)
Q Consensus 77 ~~~~~~k~~~~~~kvllsi-------Gg~~~~~~~~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-~~~ 147 (468)
+.+..+|.. ++.|+-.| || ..+.+..|+. +++-.=-+++.+++..+.|||||--|+=|-.+. +.+
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg----~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~ 204 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGG----DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPL 204 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCc----hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcch
Confidence 345544443 99998776 33 2345566654 666677899999999999999999999885543 455
Q ss_pred hhhHHHHHHHHHHH
Q 012216 148 KYNIGILFKEWRAA 161 (468)
Q Consensus 148 ~~~~~~~l~~lr~~ 161 (468)
.+++.+|+.-+++.
T Consensus 205 a~~M~~f~ly~ke~ 218 (553)
T COG4724 205 AEKMRQFMLYSKEY 218 (553)
T ss_pred HHHHHHHHHHHHhc
Confidence 66677777666543
No 84
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=65.52 E-value=1.6 Score=41.49 Aligned_cols=19 Identities=42% Similarity=0.791 Sum_probs=16.1
Q ss_pred CCcCCccccCCCccceeee
Q 012216 448 FSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 448 F~~~n~IG~GgfG~VYkg~ 466 (468)
|-.-|.|++|.||.||||.
T Consensus 78 fe~lnrI~EGtyGiVYRak 96 (419)
T KOG0663|consen 78 FEKLNRIEEGTYGVVYRAK 96 (419)
T ss_pred HHHHhhcccCcceeEEEec
Confidence 4445899999999999985
No 85
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=64.64 E-value=3.8 Score=31.64 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.2
Q ss_pred eeehhh
Q 012216 379 WAIVLP 384 (468)
Q Consensus 379 ~~i~~~ 384 (468)
..++++
T Consensus 69 agi~vg 74 (96)
T PTZ00382 69 AGISVA 74 (96)
T ss_pred EEEEee
Confidence 333333
No 86
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=64.53 E-value=58 Score=31.36 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=28.9
Q ss_pred HhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 83 KIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 83 k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
+....+..+.+.|+|.+. +.|+ ..+..+++.|+|||||+.--|.
T Consensus 57 ~~~~~~~p~i~ql~g~~~----------------~~~~-~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 57 DIAEDETPISVQLFGSDP----------------DTMA-EAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred hcCCccceEEEEEeCCCH----------------HHHH-HHHHHHHhCCCCEEEEECCCCH
Confidence 333446778888888442 1233 3445667889999999987663
No 87
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.38 E-value=30 Score=37.21 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcC----CCC---C-------CCcccc-------------------cccCChhhHHH
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSIGG----GNN---P-------NYSTYS-------------------SMASNPSSRKS 118 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsiGg----~~~---~-------~~~~~~-------------------~~~~~~~~r~~ 118 (468)
...++++++.+|++ +++|+|-+-= ... + +...|. --..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 45688899989888 9999987511 000 0 000000 01236677888
Q ss_pred HHHHHHHHHHHcCCCeeeeeccCCCC--CcchhhHHHHHHHHHH
Q 012216 119 FIDSSIKIARLYGFQGLDLSWPHANT--SWDKYNIGILFKEWRA 160 (468)
Q Consensus 119 fi~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~~l~~lr~ 160 (468)
+++++.-|++++++||+-||.-.... .........|+++|++
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 89999999999999999999643211 0111223456666665
No 88
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=63.84 E-value=56 Score=32.86 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=42.0
Q ss_pred HHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC----------cchhh
Q 012216 81 IVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS----------WDKYN 150 (468)
Q Consensus 81 ~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~----------~~~~~ 150 (468)
.+++..++..++++|.|... + .-....+..+++.+.|+|+|+.-.|... .+.+.
T Consensus 92 ~~~~~~~~~p~i~si~g~~~------------~----~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~ 155 (420)
T PRK08318 92 RVKRDYPDRALIASIMVECN------------E----EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (420)
T ss_pred HHHhhCCCceEEEEeccCCC------------H----HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHH
Confidence 35554456778899987411 1 2223455566778999999999988621 34556
Q ss_pred HHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAV 162 (468)
Q Consensus 151 ~~~~l~~lr~~l 162 (468)
+.++++++++..
T Consensus 156 ~~~i~~~v~~~~ 167 (420)
T PRK08318 156 VEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHHHhcc
Confidence 666777776653
No 89
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.83 E-value=55 Score=31.78 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcc---
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWD--- 147 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~--- 147 (468)
..+.+.+.+..++++. ++.++++|+|.+. +.+ ..++..+++.|+|+|+|++-.|....+
T Consensus 85 g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g 146 (334)
T PRK07565 85 GPEEYLELIRRAKEAV-DIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISG 146 (334)
T ss_pred CHHHHHHHHHHHHHhc-CCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCcc
Confidence 3444444444455443 6889999988432 122 345566677899999999866432111
Q ss_pred ---hhhHHHHHHHHHHHH
Q 012216 148 ---KYNIGILFKEWRAAV 162 (468)
Q Consensus 148 ---~~~~~~~l~~lr~~l 162 (468)
.+.+.++++++++..
T Consensus 147 ~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 147 AEVEQRYLDILRAVKSAV 164 (334)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 123556666666553
No 90
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.17 E-value=69 Score=31.47 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEE---cCCCCCCC------cc------------cccccCC---hhhHHHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSI---GGGNNPNY------ST------------YSSMASN---PSSRKSFIDSSIKI 126 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi---Gg~~~~~~------~~------------~~~~~~~---~~~r~~fi~~i~~~ 126 (468)
.-+.++++++.+|++ +.|+++-| |....... .. ....++. .+..+.|++.. ..
T Consensus 76 ~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~ 152 (361)
T cd04747 76 ALAGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-AD 152 (361)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HH
Confidence 345667777777777 88888877 32211000 00 0011111 12334555543 45
Q ss_pred HHHcCCCeeeeeccC---------CCC--Cc-----chhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeec
Q 012216 127 ARLYGFQGLDLSWPH---------ANT--SW-----DKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAY 183 (468)
Q Consensus 127 l~~~~~DGidiD~E~---------~~~--~~-----~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~ 183 (468)
+++-|||||+|+--+ |.. .+ .-+|=..|+.++-+++++.- .+++.|.+.+.+
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v-----G~d~~v~vRis~ 220 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV-----GPDFPIILRFSQ 220 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc-----CCCCeEEEEECc
Confidence 566799999999765 322 11 22344555555555555431 124677777763
No 91
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=62.74 E-value=79 Score=30.13 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCC----------cch
Q 012216 79 TDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTS----------WDK 148 (468)
Q Consensus 79 ~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~----------~~~ 148 (468)
+..+++..++..++.++.|... + +.+++ +++.+.+.++|+|||++--|... .+.
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~ 153 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDP 153 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCH
Confidence 3345554446778899877411 1 23333 44566777999999999987641 344
Q ss_pred hhHHHHHHHHHHHH
Q 012216 149 YNIGILFKEWRAAV 162 (468)
Q Consensus 149 ~~~~~~l~~lr~~l 162 (468)
+.+.++++.+|+..
T Consensus 154 ~~~~~iv~~v~~~~ 167 (299)
T cd02940 154 ELVEEICRWVREAV 167 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666666543
No 92
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.91 E-value=24 Score=34.01 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=26.2
Q ss_pred CcEEEEeeEEeeCCCc----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 48 FTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
.--||.....+.+.+. .+.+ .+.....++++++.+|++ +.|+++-|
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 4556666666665541 1112 222445677777777776 67776554
No 93
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=60.62 E-value=47 Score=32.15 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEc---CCCCCCCcccccccCC---h---hhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIG---GGNNPNYSTYSSMASN---P---SSRKSFIDSSIKIARLYGFQGLDLSWPH 141 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiG---g~~~~~~~~~~~~~~~---~---~~r~~fi~~i~~~l~~~~~DGidiD~E~ 141 (468)
+.+....+.+++|+. |+||||-+- -|.+|..........+ + +....+..++++.|+.. |+..||-+
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEE
Confidence 445555566666666 999999983 1332222222222222 1 33445566666666665 56677754
Q ss_pred CCC------------CcchhhHHHHHHHHHHHHHHHh
Q 012216 142 ANT------------SWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 142 ~~~------------~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.++ ..+.+++..|+++-.++.++..
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 442 2455667777766666666543
No 94
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=59.55 E-value=1.7e+02 Score=28.46 Aligned_cols=90 Identities=8% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCcEEEEeeEEeeCCCc----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc---------------
Q 012216 47 LFTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSIG--GGNNPNYS--------------- 104 (468)
Q Consensus 47 ~~thii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsiG--g~~~~~~~--------------- 104 (468)
.+.-|+.....+++.+. .+.+ .+...+.++++.+.+|++ +.|+++-+. |... ...
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~-~~~~~~~~ps~~~~~~~~ 126 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKA-ELEGDIVAPSAIPFDEKS 126 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCC-CCCCCccCCCCCCCCCCC
Confidence 35556666555655431 1222 222445667777777776 888887773 2221 000
Q ss_pred ccccccCCh---hhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012216 105 TYSSMASNP---SSRKSFIDSSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 105 ~~~~~~~~~---~~r~~fi~~i~~~l~~~~~DGidiD~E 140 (468)
.....++.+ +..+.|++.. ..+++-|||||+|+--
T Consensus 127 ~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 127 KTPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 000111111 3445566544 4556679999999866
No 95
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=59.32 E-value=39 Score=34.81 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhCCCcEEEEEE---cCCCCCCCccc---ccc--cCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC--
Q 012216 75 FSNFTDIVKIKNPSITTLLSI---GGGNNPNYSTY---SSM--ASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-- 144 (468)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsi---Gg~~~~~~~~~---~~~--~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-- 144 (468)
...+++.+++.+|++|++.|- -+|.. .+..+ ..+ ...++.++.+++=++++++.|.=-||+|+---+.+
T Consensus 155 ~ip~ik~a~~~~~~lki~aSpWSpP~WMK-tn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASPWSPPAWMK-TNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---GGGB-TTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHc-cCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 356677788889999999875 22221 01111 111 11346789999999999999998899887532222
Q ss_pred -------------CcchhhHHHHHHH-HHHHHHHHhhccCCCcceEEEEEeec--CcccccccCCHHHHhccccEEeecc
Q 012216 145 -------------SWDKYNIGILFKE-WRAAVDLEARNNSSKSQLILTAEVAY--SPHSTAAAYTVDSIRQYLNWVHVMT 208 (468)
Q Consensus 145 -------------~~~~~~~~~~l~~-lr~~l~~~~~~~~~~~~~~ls~a~~~--~~~~~~~~~~~~~l~~~~D~v~lm~ 208 (468)
.-..+....||+. |+-+|++.+.. ..-.++...=.. .+.....-+.-++..+|+|.+-+..
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g---~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~Hw 310 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG---KDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHW 310 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT----TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC---CceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEEC
Confidence 1123456788886 99999876431 011233332110 0111010122245567888887766
Q ss_pred c
Q 012216 209 T 209 (468)
Q Consensus 209 y 209 (468)
|
T Consensus 311 Y 311 (496)
T PF02055_consen 311 Y 311 (496)
T ss_dssp T
T ss_pred C
Confidence 6
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.85 E-value=9.5 Score=30.82 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcc
Q 012216 385 ITATCILLIGFLLYYYCWMKNLK 407 (468)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~ 407 (468)
++++++-++++++++.++.||++
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555544444444433
No 97
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=58.74 E-value=1.2e+02 Score=31.70 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=36.8
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeec-cCCCC-----CcchhhHHHHHHHHHHHHHHHh
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSW-PHANT-----SWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~-E~~~~-----~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.|++.|+.+++.+..|++ +|+||+-+|- .+... ..+...-..|++++++.+++..
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~ 231 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREY 231 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhC
Confidence 467788888887777776 8999999994 32210 0111122468899998887653
No 98
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=57.65 E-value=32 Score=33.39 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=27.8
Q ss_pred CCcEEEEeeEEeeCCCc----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 47 LFTHLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 47 ~~thii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
.+--|+-....+++.+. .+.+ .+.....++++.+.+|++ +.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 45556666666665531 1222 222446677777778876 78888776
No 99
>PRK14866 hypothetical protein; Provisional
Probab=57.50 E-value=28 Score=35.02 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCCCCccccc-----------ccCChhhHHHH-HH-HHHHHHHHcCCCeeeeeccCCCCCcchhhHHH
Q 012216 87 PSITTLLSIGGGNNPNYSTYSS-----------MASNPSSRKSF-ID-SSIKIARLYGFQGLDLSWPHANTSWDKYNIGI 153 (468)
Q Consensus 87 ~~~kvllsiGg~~~~~~~~~~~-----------~~~~~~~r~~f-i~-~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ 153 (468)
...++++.|||... ...|.. ++.+=.. ..+ -. .+.+.+++.+.|.+.|||....+ .++..+..
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~ 258 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEA 258 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHH
Confidence 46799999999776 444333 3322110 000 11 34455556789999999987654 67776666
Q ss_pred HHHHH
Q 012216 154 LFKEW 158 (468)
Q Consensus 154 ~l~~l 158 (468)
+++++
T Consensus 259 ~l~~l 263 (451)
T PRK14866 259 LLEEL 263 (451)
T ss_pred HHHHC
Confidence 66664
No 100
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=57.44 E-value=4.7 Score=40.84 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=14.9
Q ss_pred CccccCCCccceeeec
Q 012216 452 NKLGEGGYGPVYKVMY 467 (468)
Q Consensus 452 n~IG~GgfG~VYkg~L 467 (468)
.+||+|.||.||+|.|
T Consensus 163 kkLGeGaFGeV~~G~l 178 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKL 178 (474)
T ss_pred ceeecccccEEEEEEE
Confidence 6899999999999986
No 101
>PTZ00036 glycogen synthase kinase; Provisional
Probab=57.29 E-value=3.5 Score=41.80 Aligned_cols=23 Identities=26% Similarity=0.754 Sum_probs=18.7
Q ss_pred hcCCCcCCccccCCCccceeeec
Q 012216 445 TDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 445 T~~F~~~n~IG~GgfG~VYkg~L 467 (468)
+++|....+||+|+||.||+|..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~ 87 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAIC 87 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEE
Confidence 34566678999999999999863
No 102
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=57.23 E-value=4.4 Score=40.00 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=15.8
Q ss_pred CCcCCccccCCCccceeee
Q 012216 448 FSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 448 F~~~n~IG~GgfG~VYkg~ 466 (468)
|.-.+.||+|+||.||+++
T Consensus 40 ~~~~~~LG~G~fg~V~~~~ 58 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEAT 58 (374)
T ss_pred ceehheecCCCcccEEEEE
Confidence 4456789999999999875
No 103
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.08 E-value=49 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=28.5
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 110 ASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 110 ~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
..||+.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 358889999988888888899999999998665
No 104
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=56.98 E-value=3.5 Score=38.72 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAVDL 164 (468)
Q Consensus 151 ~~~~l~~lr~~l~~ 164 (468)
-..|+++|...|+.
T Consensus 21 ki~lVekLA~~~GD 34 (290)
T PF05454_consen 21 KILLVEKLARLFGD 34 (290)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhCC
Confidence 34466666665554
No 105
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.98 E-value=4.7 Score=31.04 Aligned_cols=9 Identities=56% Similarity=0.774 Sum_probs=6.3
Q ss_pred CcchhHHHH
Q 012216 1 MASKIIILV 9 (468)
Q Consensus 1 m~~~~~~~~ 9 (468)
|++|++++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 898875544
No 106
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=56.11 E-value=3.4 Score=46.00 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=17.8
Q ss_pred HhcCCCcCCccccCCCccceeee
Q 012216 444 ATDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 444 aT~~F~~~n~IG~GgfG~VYkg~ 466 (468)
-.++|-+=.++|+||||.|||+.
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEEe
Confidence 34456555689999999999974
No 107
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=55.56 E-value=4.2 Score=42.39 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHhcCCCcCCccccCCCccceeeec
Q 012216 443 VATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 443 ~aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
..+..+...++||+|+||+||+|..
T Consensus 330 ~~~~~~~~~~~iG~G~~g~Vy~~~~ 354 (535)
T PRK09605 330 EVKRRKIPDHLIGKGAEADIKKGEY 354 (535)
T ss_pred ccccccCccceeccCCcEEEEEEee
Confidence 3444456788999999999999764
No 108
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=55.38 E-value=1.1e+02 Score=29.69 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=41.1
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----CcchhhHHHHHHHHHHH
Q 012216 87 PSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----SWDKYNIGILFKEWRAA 161 (468)
Q Consensus 87 ~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~~~~~~l~~lr~~ 161 (468)
.+..+++||+|... . . .++.-+.|++.+-.+ .. ..|+|+|++--|.. .++.+.+.++++++|+.
T Consensus 127 ~~~plivsi~g~~~--~-~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~ 195 (327)
T cd04738 127 RGGPLGVNIGKNKD--T-P------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE 195 (327)
T ss_pred CCCeEEEEEeCCCC--C-c------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence 47889999988542 1 1 112233444433332 23 38999999976643 24556777888888887
Q ss_pred HH
Q 012216 162 VD 163 (468)
Q Consensus 162 l~ 163 (468)
..
T Consensus 196 ~~ 197 (327)
T cd04738 196 RN 197 (327)
T ss_pred Hh
Confidence 75
No 109
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=54.60 E-value=73 Score=30.62 Aligned_cols=58 Identities=22% Similarity=0.127 Sum_probs=34.7
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CcchhhHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~~l~ 156 (468)
...+.+.|.|.+ + +.|++.. ..+.+.|+|||||+.-.|.. ..+.+...++++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHHH-HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 356778887733 2 2344333 34566799999999887752 123344555666
Q ss_pred HHHHHH
Q 012216 157 EWRAAV 162 (468)
Q Consensus 157 ~lr~~l 162 (468)
++|+++
T Consensus 125 avr~~~ 130 (312)
T PRK10550 125 AMREAV 130 (312)
T ss_pred HHHHhc
Confidence 666554
No 110
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=54.59 E-value=2e+02 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
+.....++.+++| +.++|||+-+
T Consensus 102 D~~k~ieiakRAk--~~GmKVl~dF 124 (403)
T COG3867 102 DLKKAIEIAKRAK--NLGMKVLLDF 124 (403)
T ss_pred hHHHHHHHHHHHH--hcCcEEEeec
Confidence 4444445554444 5599999986
No 111
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=54.59 E-value=3.4 Score=40.77 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCcCCccccCCCccceeee
Q 012216 438 LADIEVATDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 438 ~~~l~~aT~~F~~~n~IG~GgfG~VYkg~ 466 (468)
+.++....++|.-...||+|+||.||++.
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~ 63 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVR 63 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEE
Confidence 34444556778878899999999999885
No 112
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=53.55 E-value=3.1 Score=41.76 Aligned_cols=16 Identities=56% Similarity=0.976 Sum_probs=13.9
Q ss_pred CCccccCCCccceeee
Q 012216 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~ 466 (468)
-..||+|.||.||||.
T Consensus 122 i~kIGeGTyg~VYkAr 137 (560)
T KOG0600|consen 122 IEKIGEGTYGQVYKAR 137 (560)
T ss_pred HHHhcCcchhheeEee
Confidence 3579999999999985
No 113
>PLN02361 alpha-amylase
Probab=53.40 E-value=1.4e+02 Score=29.74 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=27.8
Q ss_pred CChhhHHHHHHHHHHHHH-HcCCCeeeeeccCCCCCcchhhHHHHHHHHHHH
Q 012216 111 SNPSSRKSFIDSSIKIAR-LYGFQGLDLSWPHANTSWDKYNIGILFKEWRAA 161 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~-~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~ 161 (468)
.|+..|+.+++-+ +++. +.|+||+-+|.-.-.. ..|++++.++
T Consensus 152 ~np~Vr~~l~~~~-~wl~~~~GiDGfRlDavk~~~-------~~f~~~~~~~ 195 (401)
T PLN02361 152 TQHFVRKDIIGWL-IWLRNDVGFQDFRFDFAKGYS-------AKFVKEYIEA 195 (401)
T ss_pred CCHHHHHHHHHHH-HHHHhcCCCCEEEEeccccCC-------HHHHHHHHHh
Confidence 3566777777665 5665 5899999999553322 4466665443
No 114
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=53.27 E-value=3.6 Score=40.59 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=18.5
Q ss_pred HhcCCCcCCccccCCCccceeee
Q 012216 444 ATDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 444 aT~~F~~~n~IG~GgfG~VYkg~ 466 (468)
..++|.-..+||+|+||.||++.
T Consensus 41 ~~~~y~~~~~lG~G~fg~Vy~~~ 63 (370)
T cd05621 41 KAEDYDVVKVIGRGAFGEVQLVR 63 (370)
T ss_pred CHHHCeEEEEEEecCCeEEEEEE
Confidence 34556667789999999999886
No 115
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=52.69 E-value=59 Score=31.33 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred hCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CcchhhHHH
Q 012216 85 KNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYNIGI 153 (468)
Q Consensus 85 ~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~ 153 (468)
......+.+.|+|.+ ++ .| ...+..+.++|+|||||+.--|.. ..+.+...+
T Consensus 51 ~~~e~p~~vQl~g~~-------------p~---~~-~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~ 113 (318)
T TIGR00742 51 SPEESPVALQLGGSD-------------PN---DL-AKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVAD 113 (318)
T ss_pred CCCCCcEEEEEccCC-------------HH---HH-HHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHH
Confidence 344566778888743 21 22 235556677899999999977653 133444566
Q ss_pred HHHHHHHHH
Q 012216 154 LFKEWRAAV 162 (468)
Q Consensus 154 ~l~~lr~~l 162 (468)
+++++++++
T Consensus 114 iv~av~~~~ 122 (318)
T TIGR00742 114 CVKAMQEAV 122 (318)
T ss_pred HHHHHHHHh
Confidence 777777665
No 116
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.97 E-value=45 Score=33.07 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
.+.++++.+..|++ +.|+++-|
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEc
Confidence 35677787778877 88999887
No 117
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=51.93 E-value=1.1e+02 Score=27.62 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccccc
Q 012216 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA 191 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
|.++...++..+.+...- .+|-.|.|.+..+++.-.+.+++||+.|++.+-. ..|.+. -|....
T Consensus 87 d~~~~adYl~~l~~aA~P-----~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~------v~iVAD----EWCNT~- 150 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP-----FKLRIEGPMDAGSREAQIEALAELREELDRRGIN------VEIVAD----EWCNTL- 150 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT-----S-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--------EEEEE-----TT--SH-
T ss_pred CHHHHHHHHHHHHHhcCC-----CeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCC------CeEEee----hhcCCH-
Confidence 566667777777766654 4677899998889999999999999999986633 333322 111110
Q ss_pred CCHHHH--hccccEEeeccccccCC
Q 012216 192 YTVDSI--RQYLNWVHVMTTEYSNP 214 (468)
Q Consensus 192 ~~~~~l--~~~~D~v~lm~yd~~~~ 214 (468)
-|++.. ++.+|+|.|.|=|+.|-
T Consensus 151 eDI~~F~da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 151 EDIREFADAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp HHHHHHHHTT-SSEEEE-GGGGSST
T ss_pred HHHHHHHhcCCcCEEEecCCCccch
Confidence 133333 57799999999998764
No 118
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=51.55 E-value=51 Score=31.98 Aligned_cols=41 Identities=20% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 86 NPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 86 ~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
.....+.+.|+|.+ + +.|+ ..+..+++.|+|||||+.--|.
T Consensus 62 ~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGSD-------------P---ADLA-EAAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCCC-------------H---HHHH-HHHHHHHhcCCCEEEEcCCCCH
Confidence 34567788888743 2 2333 3456778889999999987664
No 119
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.24 E-value=86 Score=30.18 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=27.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
.||+.|+-+.+.+.+.+.+.|+||+=+|.-.|.
T Consensus 129 tnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 129 TNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 478888888888888888999999999986553
No 120
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.75 E-value=34 Score=36.69 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E 140 (468)
.|++.|+.+++.+..||+++|+||+-||--
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 356888999999999999999999999943
No 121
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=49.54 E-value=1.4e+02 Score=28.60 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC-
Q 012216 68 SPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWPHANTS- 145 (468)
Q Consensus 68 ~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGidiD~E~~~~~- 145 (468)
.+...+.+.+.+..+++..++..++.||-|.+. + .+. .+++.++..+ .|.|+|+.--|..+
T Consensus 72 ~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~---~-------------~~~-~~a~~~~~~g~ad~iElN~ScPn~~~ 134 (310)
T PRK02506 72 PNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSP---E-------------ETH-TILKKIQASDFNGLVELNLSCPNVPG 134 (310)
T ss_pred CCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcH---H-------------HHH-HHHHHHhhcCCCCEEEEECCCCCCCC
Confidence 333344444444445555556888999977442 2 222 3344456777 89999999877432
Q ss_pred -----cchhhHHHHHHHHHHHH
Q 012216 146 -----WDKYNIGILFKEWRAAV 162 (468)
Q Consensus 146 -----~~~~~~~~~l~~lr~~l 162 (468)
.|.+.+.++++.+|+..
T Consensus 135 ~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 135 KPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred ccccccCHHHHHHHHHHHHHhc
Confidence 23455666777776654
No 122
>PHA03210 serine/threonine kinase US3; Provisional
Probab=49.52 E-value=7.4 Score=40.20 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=18.0
Q ss_pred hcCCCcCCccccCCCccceeee
Q 012216 445 TDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~F~~~n~IG~GgfG~VYkg~ 466 (468)
.+.|.-...||+|+||+||++.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~ 168 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICA 168 (501)
T ss_pred hhccEEEeEecCCCCcceEEEE
Confidence 4567767899999999999864
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=49.15 E-value=65 Score=30.22 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhh
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYN 150 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~ 150 (468)
....+.++++-+|++ +|+|+|-.--.+. .... ...++ .+...+.+++.|..||-+||-.- +.+.
T Consensus 71 ~~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~~------~~~~~-~~~~f~~~~~~Gv~GvKidF~~~----d~Q~ 134 (273)
T PF10566_consen 71 PDFDLPELVDYAKEK--GVGIWLWYHSETG---GNVA------NLEKQ-LDEAFKLYAKWGVKGVKIDFMDR----DDQE 134 (273)
T ss_dssp TT--HHHHHHHHHHT--T-EEEEEEECCHT---TBHH------HHHCC-HHHHHHHHHHCTEEEEEEE--SS----TSHH
T ss_pred CccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhhH------hHHHH-HHHHHHHHHHcCCCEEeeCcCCC----CCHH
Confidence 345677888888888 7888876532111 0011 12223 38889999999999999998843 3445
Q ss_pred HHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAV 162 (468)
Q Consensus 151 ~~~~l~~lr~~l 162 (468)
.+++..++-+..
T Consensus 135 ~v~~y~~i~~~A 146 (273)
T PF10566_consen 135 MVNWYEDILEDA 146 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 124
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=48.61 E-value=74 Score=33.66 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEE---------------cCCCCCC--------Cccccccc---CChhhHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSI---------------GGGNNPN--------YSTYSSMA---SNPSSRKSFIDSSI 124 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi---------------Gg~~~~~--------~~~~~~~~---~~~~~r~~fi~~i~ 124 (468)
.++.++.|++.+|++ ++-|+|-+ .|..... ...|-..+ ...+.|.=|++++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 688999999999988 89999854 1110000 11222222 24567888999999
Q ss_pred HHHHHcCCCeeeeec
Q 012216 125 KIARLYGFQGLDLSW 139 (468)
Q Consensus 125 ~~l~~~~~DGidiD~ 139 (468)
-||++|.+||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998874
No 125
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=48.59 E-value=1.7e+02 Score=28.47 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccC--------Chh-----hHHHHHHHHHHHHHHcCCCeeee
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMAS--------NPS-----SRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~--------~~~-----~r~~fi~~i~~~l~~~~~DGidi 137 (468)
......++.+.+|++ |+|+.+-...+.. ....+..-.. .+. ..+....++.+++.+|..|.+=+
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDW-HHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSC-CCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHh-cCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 456778888889988 8998876655432 0111111111 111 12256678899999999999999
Q ss_pred eccCCCCCcchhhHHHHHHHHHH
Q 012216 138 SWPHANTSWDKYNIGILFKEWRA 160 (468)
Q Consensus 138 D~E~~~~~~~~~~~~~~l~~lr~ 160 (468)
|.-.+.. .+...+..+...+|+
T Consensus 213 Dg~~~~~-~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 213 DGGWPDP-DEDWDSAELYNWIRK 234 (346)
T ss_dssp ESTTSCC-CTHHHHHHHHHHHHH
T ss_pred cCCCCcc-ccccCHHHHHHHHHH
Confidence 9776642 333344444444443
No 126
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=48.58 E-value=3.2 Score=40.93 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=18.0
Q ss_pred hcCCCcCCccccCCCccceeee
Q 012216 445 TDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~F~~~n~IG~GgfG~VYkg~ 466 (468)
.++|....+||+|+||.||++.
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~ 63 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVR 63 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEE
Confidence 3456667899999999999885
No 127
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.20 E-value=64 Score=28.74 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=45.1
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.||.. .++.+.+.|.|-|-+.+|-. .....+++.+|+. + ....+++-+..
T Consensus 62 vHLMv~~P~~-------~i~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~----g--------~k~GialnP~T 116 (201)
T PF00834_consen 62 VHLMVENPER-------YIEEFAEAGADYITFHAEAT------EDPKETIKYIKEA----G--------IKAGIALNPET 116 (201)
T ss_dssp EEEESSSGGG-------HHHHHHHHT-SEEEEEGGGT------TTHHHHHHHHHHT----T--------SEEEEEE-TTS
T ss_pred EEeeeccHHH-------HHHHHHhcCCCEEEEcccch------hCHHHHHHHHHHh----C--------CCEEEEEECCC
Confidence 4556667642 34445667999999999932 2334556666553 2 44666665433
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .++.+.+.+|+|.+|+-+
T Consensus 117 ~~~----~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 117 PVE----ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp -GG----GGTTTGCCSSEEEEESS-
T ss_pred Cch----HHHHHhhhcCEEEEEEec
Confidence 222 245667889999999976
No 128
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=47.92 E-value=34 Score=27.37 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhc
Q 012216 120 IDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARN 168 (468)
Q Consensus 120 i~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~ 168 (468)
.+.+.++|.+.|++.--+++++... .+.+.|+..++++-+.+.+.+.+
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lGpn 127 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELGPN 127 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhCCC
Confidence 4556778889999998888888765 78899999999999999887643
No 129
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=47.66 E-value=7.4 Score=38.23 Aligned_cols=16 Identities=44% Similarity=0.887 Sum_probs=13.8
Q ss_pred CccccCCCccceeeec
Q 012216 452 NKLGEGGYGPVYKVMY 467 (468)
Q Consensus 452 n~IG~GgfG~VYkg~L 467 (468)
..||+|+||+||||..
T Consensus 47 ~~iG~G~~g~V~~~~~ 62 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKW 62 (362)
T ss_pred hhcccCCceeEEEEEe
Confidence 3599999999999864
No 130
>PHA03209 serine/threonine kinase US3; Provisional
Probab=47.37 E-value=8.2 Score=37.75 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.0
Q ss_pred HhcCCCcCCccccCCCccceeeec
Q 012216 444 ATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 444 aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
...+|.....||+|+||.||+|..
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~ 87 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATK 87 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEE
Confidence 345688888999999999999863
No 131
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=46.84 E-value=1.2e+02 Score=30.13 Aligned_cols=86 Identities=9% Similarity=-0.037 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccccc-------ccCChhhHHHH---HHHHHHHHHHcCCCeeeeecc
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSS-------MASNPSSRKSF---IDSSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~-------~~~~~~~r~~f---i~~i~~~l~~~~~DGidiD~E 140 (468)
....+.++.+.+|++ |+|+-+-...+.. ....+.. -...+...+-+ ..++.++|.+||-|.+=+|+.
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW-~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDW-FNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHh-CCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 556778888888888 8998887664332 0111211 01111222222 689999999999999999987
Q ss_pred CCCCCcchhhHHHHHHHHHH
Q 012216 141 HANTSWDKYNIGILFKEWRA 160 (468)
Q Consensus 141 ~~~~~~~~~~~~~~l~~lr~ 160 (468)
++.. .+......|++.+|+
T Consensus 203 ~~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 203 WEAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCCc-cchhcHHHHHHHHHH
Confidence 6543 222233444444443
No 132
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=46.77 E-value=2.4e+02 Score=26.09 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-CCeeeeeccCC
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWPHA 142 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGidiD~E~~ 142 (468)
.........+++..+++++++++--... ...| -.+++.|.++. ..+-+.+ .|-|||++..+
T Consensus 59 ~~~~~~~~~l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll----~~~~~~~~~d~vDiEl~~~ 120 (253)
T PRK02412 59 ESVLAAAPAIREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALI----KAVIKSGLPDYIDVELFSG 120 (253)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHH----HHHHhcCCCCEEEEeccCC
Confidence 3334444456666667899999953222 1111 12334444433 3334456 89999988643
No 133
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=45.93 E-value=42 Score=30.15 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCCCCccc-----------ccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHH
Q 012216 90 TTLLSIGGGNNPNYSTY-----------SSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEW 158 (468)
Q Consensus 90 kvllsiGg~~~~~~~~~-----------~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~l 158 (468)
++++.+||.-. ...| ..++.+-....-=-+-+.+.+++.+.+-+-|||....+ .++..+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999776 4433 33443321111113445566677799999999997664 6666666666654
No 134
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=45.68 E-value=90 Score=29.07 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
+...++++.+|++ ++|+++.+-- ..|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 66 pdp~~~i~~l~~~--g~~~~~~~~P----------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 66 PNPKSMIDELHDN--GVKLVLWIDP----------------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCh----------------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 3446678888887 8999998731 117777777777778999999999987654
No 135
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.62 E-value=2.4e+02 Score=26.72 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhh--CCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHc--CCCeeeeeccCCCCC-
Q 012216 71 DEKQFSNFTDIVKIK--NPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLY--GFQGLDLSWPHANTS- 145 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~--~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~--~~DGidiD~E~~~~~- 145 (468)
..+.+.+.+..+++. .++..+++||+|. . +.+++.+..+.... +.|+|||+.--|...
T Consensus 72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~ 134 (294)
T cd04741 72 GLDYYLEYIRTISDGLPGSAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPG 134 (294)
T ss_pred CHHHHHHHHHHHhhhccccCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCC
Confidence 334444433333332 2467889999873 1 23443333333333 699999999877631
Q ss_pred -----cchhhHHHHHHHHHHHH
Q 012216 146 -----WDKYNIGILFKEWRAAV 162 (468)
Q Consensus 146 -----~~~~~~~~~l~~lr~~l 162 (468)
.+.+.+.++++.+++..
T Consensus 135 ~~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 135 KPPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhc
Confidence 24556677777777664
No 136
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.54 E-value=99 Score=30.81 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCC-CCCCccc----------------------ccccCChhhHHHHHHHHHHHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGN-NPNYSTY----------------------SSMASNPSSRKSFIDSSIKIA 127 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~-~~~~~~~----------------------~~~~~~~~~r~~fi~~i~~~l 127 (468)
-+..+..+++.+|++ |+|.-|=+.-.. .+++..+ .-=+++|+.|+-+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 345678888888887 888776551110 0011111 111467888999999999999
Q ss_pred HHcCCCeeeeeccCC
Q 012216 128 RLYGFQGLDLSWPHA 142 (468)
Q Consensus 128 ~~~~~DGidiD~E~~ 142 (468)
+++|+|.|-+|+...
T Consensus 180 ~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 180 REWGIDYIKWDFNRD 194 (394)
T ss_dssp HHTT-SEEEEE-TS-
T ss_pred HhcCCCEEEeccccC
Confidence 999999999999853
No 137
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=45.36 E-value=8 Score=37.71 Aligned_cols=16 Identities=50% Similarity=0.922 Sum_probs=14.2
Q ss_pred CCccccCCCccceeee
Q 012216 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~ 466 (468)
.+.||+|+||+||+|.
T Consensus 79 ~~~lg~G~~g~V~~~~ 94 (353)
T PLN00034 79 VNRIGSGAGGTVYKVI 94 (353)
T ss_pred hhhccCCCCeEEEEEE
Confidence 4589999999999986
No 138
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=44.57 E-value=2.4e+02 Score=25.51 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=26.2
Q ss_pred ceeeeccceeeeeeecCCCCCCCccccCCCCCCCCCcccHHHHHHH
Q 012216 251 KMVLCLPFYGYAWTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNR 296 (468)
Q Consensus 251 Ki~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~ 296 (468)
-|.+++.-.|+.-++.++-....-..+..+...-+|+++..++.+.
T Consensus 182 ~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 182 LITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLREL 227 (228)
T ss_pred EEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhh
Confidence 3566666677766666553332222222222345788998888763
No 139
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=43.43 E-value=16 Score=28.97 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=14.4
Q ss_pred HHHHHHHCCCCcCceeeec
Q 012216 238 GITEWIEEGLSADKMVLCL 256 (468)
Q Consensus 238 ~v~~~~~~g~~~~Ki~lgl 256 (468)
..+.+++.|+|++.||||+
T Consensus 79 Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHcCCCHHHEEEcc
Confidence 3467889999999999997
No 140
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=42.61 E-value=1.3e+02 Score=29.21 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.7
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 110 ASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 110 ~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
..|++.|+=+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 4588888888888888888899999999987664
No 141
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.60 E-value=21 Score=38.22 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.7
Q ss_pred CCccccCCCccceeeec
Q 012216 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~L 467 (468)
...||+|.||.||+|+.
T Consensus 491 ~~eLGegaFGkVf~a~~ 507 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEA 507 (774)
T ss_pred hhhhcCchhhhhhhhhc
Confidence 35699999999999975
No 142
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=42.24 E-value=2.1e+02 Score=27.64 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=34.5
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcc------hhhHHHHHHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWD------KYNIGILFKEWRAA 161 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~------~~~~~~~l~~lr~~ 161 (468)
+..++++|.|.+. +.| ..+++.+++.|+|+|+|+.-.+....+ .+.+.++++++|+.
T Consensus 99 ~~pvi~si~g~~~----------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 99 SIPVIASLNGVSA----------------GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred CCeEEEEeCCCCH----------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 6788999976321 122 345556677899999999976432111 12344555555554
Q ss_pred H
Q 012216 162 V 162 (468)
Q Consensus 162 l 162 (468)
.
T Consensus 162 ~ 162 (325)
T cd04739 162 V 162 (325)
T ss_pred c
Confidence 3
No 143
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=42.14 E-value=1.1e+02 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN 143 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~ 143 (468)
.||+.|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 588999999998888888999999999987664
No 144
>PRK01060 endonuclease IV; Provisional
Probab=41.78 E-value=57 Score=30.53 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 120 IDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
+...++.+.+.|||||+|..+.|........-...++++|+.+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 55688999999999999987655431111223345777888887654
No 145
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=40.56 E-value=14 Score=39.54 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=14.0
Q ss_pred CCccccCCCccceeee
Q 012216 451 ENKLGEGGYGPVYKVM 466 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~ 466 (468)
...+|+|+||+||-|.
T Consensus 999 ~relg~gsfg~Vy~g~ 1014 (1025)
T KOG4258|consen 999 GRELGQGSFGMVYEGN 1014 (1025)
T ss_pred hhhhccCccceEEEec
Confidence 5689999999999875
No 146
>PF15050 SCIMP: SCIMP protein
Probab=40.25 E-value=21 Score=28.28 Aligned_cols=10 Identities=0% Similarity=-0.044 Sum_probs=4.8
Q ss_pred cCHHHHHHHh
Q 012216 436 YSLADIEVAT 445 (468)
Q Consensus 436 f~~~~l~~aT 445 (468)
-+|.-+.+++
T Consensus 94 atYS~vnk~r 103 (133)
T PF15050_consen 94 ATYSLVNKVR 103 (133)
T ss_pred chhhhhHhhc
Confidence 4555555443
No 147
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=40.08 E-value=13 Score=41.32 Aligned_cols=17 Identities=41% Similarity=0.827 Sum_probs=15.2
Q ss_pred CCccccCCCccceeeec
Q 012216 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~L 467 (468)
.+.||+|.||.||+|.+
T Consensus 697 ~~~lG~G~FG~VY~g~~ 713 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTY 713 (1025)
T ss_pred eeeeccccccceEEEEE
Confidence 46899999999999975
No 148
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.87 E-value=2.4e+02 Score=24.39 Aligned_cols=170 Identities=20% Similarity=0.177 Sum_probs=94.4
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccc
Q 012216 110 ASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTA 189 (468)
Q Consensus 110 ~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~ 189 (468)
+-+|-+|++-+..+ .-|.|=|| ...|...+=..||.-.++++|+...+ ...+|.++...|....
T Consensus 4 LvSPin~eEA~eAi-----eGGAdIiD--VKNP~EGSLGANFPWvIr~i~Ev~p~---------d~~vSAT~GDvpYKPG 67 (235)
T COG1891 4 LVSPINREEAIEAI-----EGGADIID--VKNPAEGSLGANFPWVIREIREVVPE---------DQEVSATVGDVPYKPG 67 (235)
T ss_pred eeccCCHHHHHHHh-----hCCCceEe--ccCcccCcccCCChHHHHHHHHhCcc---------ceeeeeeecCCCCCCc
Confidence 33455565554443 23566554 46776555668999999999988753 2578888764443322
Q ss_pred cc--CCHHHHhccccEEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-----CCCCcCceeeeccceeee
Q 012216 190 AA--YTVDSIRQYLNWVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIE-----EGLSADKMVLCLPFYGYA 262 (468)
Q Consensus 190 ~~--~~~~~l~~~~D~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~-----~g~~~~Ki~lglp~yG~~ 262 (468)
.. --+.....-+||+-+--|+.. +-+++++.+.. +-+.++|+++.-. |+-.
T Consensus 68 T~slAalGaav~GaDYiKVGLYg~k---------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAaG-YaDa 125 (235)
T COG1891 68 TASLAALGAAVAGADYIKVGLYGTK---------------------NEEEALEVMKNVVRAVKDFDPSKKVVAAG-YADA 125 (235)
T ss_pred hHHHHHHHhHhhCCceEEEeecccc---------------------cHHHHHHHHHHHHHHHhccCCCceEEecc-ccch
Confidence 11 123344566899998888643 22333332221 2578888887643 3333
Q ss_pred eeecCCCCCCCccccCCCCCCCCCcccHHHHHHHhhcCCCCeEEE-EecceeeeeEEeCCeEEEEeChHHHHHHHHHHhh
Q 012216 263 WTLVKPEDNGIGAAATGPAFSDDGLVTYKEINNRIKNYGPNVQVM-YNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKE 341 (468)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~-~d~~~~~~y~~~~~~~i~yd~~~S~~~k~~~~~~ 341 (468)
++. +.++--.+.+...+.| ..+. .|. . .-+++...-|.+..-+..-.+.+++
T Consensus 126 ~Rv--------------------gsv~Pl~~P~vaa~ag--~DvaMvDT-a----iKDGkslFdfm~~e~l~eFvd~Ah~ 178 (235)
T COG1891 126 HRV--------------------GSVSPLLLPEVAAEAG--ADVAMVDT-A----IKDGKSLFDFMDEEELEEFVDLAHE 178 (235)
T ss_pred hhc--------------------cCcCccccHHHHHhcC--CCEEEEec-c----cccchhHHhhhcHHHHHHHHHHHHH
Confidence 332 1222223333333344 2221 111 0 0144555567888888888888998
Q ss_pred cCc
Q 012216 342 KKL 344 (468)
Q Consensus 342 ~~l 344 (468)
+||
T Consensus 179 hGL 181 (235)
T COG1891 179 HGL 181 (235)
T ss_pred cch
Confidence 887
No 149
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=39.10 E-value=43 Score=30.85 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=27.9
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-CCCCcCceeeeccceeee
Q 012216 203 WVHVMTTEYSNPMWTNFTGAQAALYDPNSVSNTEYGITEWIE-EGLSADKMVLCLPFYGYA 262 (468)
Q Consensus 203 ~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~-~g~~~~Ki~lglp~yG~~ 262 (468)
-+|+|+|||.|. +..+|-++-.. ....++.+++++.+ .| ++++|+| ||++
T Consensus 88 n~nv~~~DYSGy--G~S~G~psE~n---~y~Di~avye~Lr~~~g-~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGY--GRSSGKPSERN---LYADIKAVYEWLRNRYG-SPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecccc--cccCCCccccc---chhhHHHHHHHHHhhcC-CCceEEE----EEec
Confidence 569999999986 33334333221 11245555554443 34 7777765 5653
No 150
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.07 E-value=2.7e+02 Score=26.39 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHc--CCCeeeeeccCCCCC-------cchhhHHHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLY--GFQGLDLSWPHANTS-------WDKYNIGILFKEW 158 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~--~~DGidiD~E~~~~~-------~~~~~~~~~l~~l 158 (468)
+..++++|.|.+. +.+ ..+++.+.+. ++|+|||++--|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~~----------------~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSSV----------------EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCCH----------------HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 4678999977331 122 3445555554 399999998877532 2445566677777
Q ss_pred HHHH
Q 012216 159 RAAV 162 (468)
Q Consensus 159 r~~l 162 (468)
|+..
T Consensus 153 r~~~ 156 (300)
T TIGR01037 153 KDKT 156 (300)
T ss_pred HHhc
Confidence 7654
No 151
>PTZ00370 STEVOR; Provisional
Probab=38.25 E-value=31 Score=32.18 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=3.0
Q ss_pred ChHHHH
Q 012216 328 DVEAVR 333 (468)
Q Consensus 328 ~~~S~~ 333 (468)
+..|+.
T Consensus 223 ~~~Sm~ 228 (296)
T PTZ00370 223 SEESII 228 (296)
T ss_pred ChhHHH
Confidence 445555
No 152
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=38.04 E-value=2e+02 Score=33.47 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEc-------CCC--------CCCCcc-------------cc-----cccCChhhHH
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIG-------GGN--------NPNYST-------------YS-----SMASNPSSRK 117 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiG-------g~~--------~~~~~~-------------~~-----~~~~~~~~r~ 117 (468)
....++.+++.+|++ |++|+|-+- +.. ..++.. +. .-+.++..|+
T Consensus 245 ~~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~ 322 (1221)
T PRK14510 245 GEEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILR 322 (1221)
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHH
Confidence 345688888888888 999998751 100 000000 00 1123567777
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 118 SFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 118 ~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
-.++++.-|++ +++||.-+|--......+ ..|+++++..+++..
T Consensus 323 ~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai~ 366 (1221)
T PRK14510 323 LPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAMD 366 (1221)
T ss_pred HHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHhC
Confidence 78888888999 999999999653221111 236666666665543
No 153
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=37.97 E-value=77 Score=32.54 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHH
Q 012216 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 112 ~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~ 164 (468)
|++.|+.+++.+..|++++|+||+-||--.-.. ..|++++++++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHHHHHH
Confidence 677888888877767777999999999542221 3466666666654
No 154
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=37.92 E-value=2.3e+02 Score=28.01 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCcEEEEeeEEeeCCCc-----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCC---------ccc---
Q 012216 47 LFTHLMCGFADVNSTSY-----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSI--GGGNNPNY---------STY--- 106 (468)
Q Consensus 47 ~~thii~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi--Gg~~~~~~---------~~~--- 106 (468)
.+.-||.....+.+++. .+.+ .+..-+.++.+++.+|++ +.|+++-+ +|...... ...
T Consensus 51 G~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~ 128 (370)
T cd02929 51 GWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSE 128 (370)
T ss_pred CceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCC
Confidence 34556666666665541 1111 222445677777778876 88888776 23211000 000
Q ss_pred --------ccccCCh---hhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012216 107 --------SSMASNP---SSRKSFIDSSIKIARLYGFQGLDLSWPH 141 (468)
Q Consensus 107 --------~~~~~~~---~~r~~fi~~i~~~l~~~~~DGidiD~E~ 141 (468)
...++.+ +..+.|++.. ..+++-|||||+|+--+
T Consensus 129 ~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 129 FPTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 0111111 2445566544 45566799999998765
No 155
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=37.72 E-value=61 Score=22.10 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCee-eeeccCCCCCcchhhHHHHHHHHHHHH
Q 012216 121 DSSIKIARLYGFQGL-DLSWPHANTSWDKYNIGILFKEWRAAV 162 (468)
Q Consensus 121 ~~i~~~l~~~~~DGi-diD~E~~~~~~~~~~~~~~l~~lr~~l 162 (468)
+.+++.|+..|+||. .|.||-+.- +..+.+..=++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHhc
Confidence 457889999999995 788886543 33445555555555444
No 156
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.64 E-value=1.1e+02 Score=29.32 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
.|++.|+=+.+.+.+.+.+.|+||+=+|.-.+
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 47888888888787888888999998887544
No 157
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=37.56 E-value=16 Score=37.16 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=16.7
Q ss_pred cCCCcCCccccCCCccceeee
Q 012216 446 DGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 446 ~~F~~~n~IG~GgfG~VYkg~ 466 (468)
++|.-=.+||+|+||.||-+.
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLar 161 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLAR 161 (550)
T ss_pred ccchhheeeccccceeEEEEE
Confidence 456666789999999999653
No 158
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=37.02 E-value=2.8e+02 Score=25.50 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCCcchhhHHH
Q 012216 75 FSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWPHANTSWDKYNIGI 153 (468)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGidiD~E~~~~~~~~~~~~~ 153 (468)
+...-+.+|+..|++|+++. +.+. .....+++.+.+-+-.+..... +|||-+-+-......+.+.+.+
T Consensus 105 i~~af~~ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~ 173 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYN--DYNT---------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRA 173 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEe--ccCC---------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHH
Confidence 33444578899999999884 2221 1112455555555544444433 7999885432211112334444
Q ss_pred HHHHHH
Q 012216 154 LFKEWR 159 (468)
Q Consensus 154 ~l~~lr 159 (468)
.|+++.
T Consensus 174 ~l~~~~ 179 (254)
T smart00633 174 ALDRFA 179 (254)
T ss_pred HHHHHH
Confidence 444443
No 159
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=36.23 E-value=1.1e+02 Score=25.11 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccC-ChhhHHHHHHHHHHHHHHcCCCeeee
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMAS-NPSSRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGidi 137 (468)
..+.-+.+.+++. |+++++-|---+ ..|.+-+. +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvN----g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVN----GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCc----HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4555666778887 788887663221 23333333 78899999999999999999966665
No 160
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=36.22 E-value=37 Score=31.60 Aligned_cols=10 Identities=0% Similarity=-0.124 Sum_probs=4.5
Q ss_pred HHHHHHHHcC
Q 012216 122 SSIKIARLYG 131 (468)
Q Consensus 122 ~i~~~l~~~~ 131 (468)
+.-+.+++++
T Consensus 84 e~~e~~~k~~ 93 (295)
T TIGR01478 84 QLQELVEKNR 93 (295)
T ss_pred HHHHHHHhcC
Confidence 3444444443
No 161
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.13 E-value=1.9e+02 Score=27.36 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCC--CCCCCcccc-----------------cccCChhhHHHHHHHHHHHHHHcCCCe
Q 012216 74 QFSNFTDIVKIKNPSITTLLSIGGG--NNPNYSTYS-----------------SMASNPSSRKSFIDSSIKIARLYGFQG 134 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsiGg~--~~~~~~~~~-----------------~~~~~~~~r~~fi~~i~~~l~~~~~DG 134 (468)
....+++.+|++ ++|+++.+--. ..+....+. --..+|+.++-+.+.+.+.+.+.|+||
T Consensus 75 dp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 75 DPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 345677788887 89999876211 000001011 123578888889999999999999999
Q ss_pred eeeeccCC
Q 012216 135 LDLSWPHA 142 (468)
Q Consensus 135 idiD~E~~ 142 (468)
+=+|+-.|
T Consensus 153 ~W~D~~E~ 160 (292)
T cd06595 153 WWLDWQQG 160 (292)
T ss_pred EEecCCCC
Confidence 99998544
No 162
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=35.02 E-value=16 Score=38.12 Aligned_cols=17 Identities=47% Similarity=0.970 Sum_probs=15.1
Q ss_pred CCccccCCCccceeeec
Q 012216 451 ENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 451 ~n~IG~GgfG~VYkg~L 467 (468)
..+||.|-||-||+|+.
T Consensus 394 ~r~iG~GqFGdVy~gvY 410 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVY 410 (974)
T ss_pred HHhhcCCcccceeeeEe
Confidence 56899999999999974
No 163
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=34.91 E-value=29 Score=25.49 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=18.0
Q ss_pred CcchhHHHHHHHHHHhccCcCCCCCc
Q 012216 1 MASKIIILVLHIFIFSESLPAGAQTL 26 (468)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (468)
|++|..++.++.+.+..++++..++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKs 26 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKS 26 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccccc
Confidence 88888777777777776666655543
No 164
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.79 E-value=84 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 120 IDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
....++.+++.|||||+|.+.+ . .-++++++.+.+.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHHcC
Confidence 5667888899999999997532 1 12566777777655
No 165
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=34.71 E-value=15 Score=36.80 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=15.9
Q ss_pred cCCCcCCccccCCCcccee
Q 012216 446 DGFSIENKLGEGGYGPVYK 464 (468)
Q Consensus 446 ~~F~~~n~IG~GgfG~VYk 464 (468)
+.|..-.+||+||||.||-
T Consensus 185 n~F~~~RvlGkGGFGEV~a 203 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCA 203 (591)
T ss_pred cceeeeEEEecccccceeE
Confidence 3477778999999999994
No 166
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=34.63 E-value=3.5e+02 Score=26.33 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=42.4
Q ss_pred CCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----CcchhhHHHHHHHHHHH
Q 012216 87 PSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----SWDKYNIGILFKEWRAA 161 (468)
Q Consensus 87 ~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~~~~~~l~~lr~~ 161 (468)
.++.+++||+|... ...+..-+.|+..+..+ .. +.|+++|++--|.. .++.+.+.++++++|+.
T Consensus 136 ~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 136 RGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred CCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 57889999988431 01122334555444443 33 49999999876653 24556778888888888
Q ss_pred HH
Q 012216 162 VD 163 (468)
Q Consensus 162 l~ 163 (468)
..
T Consensus 205 ~~ 206 (344)
T PRK05286 205 QA 206 (344)
T ss_pred Hh
Confidence 75
No 167
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.44 E-value=89 Score=29.22 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 012216 121 DSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~ 165 (468)
...++++++.|||||+|....+........-..-++++++.+.+.
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 457889999999999997654432111111124677777777654
No 168
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=33.92 E-value=93 Score=29.83 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------Ccchhh
Q 012216 82 VKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYN 150 (468)
Q Consensus 82 ~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~ 150 (468)
+.......++.+=|+|.+ + ......++.+...++|||||+.-=|.. -.+.+.
T Consensus 47 ~~~~~~~~p~~~Ql~g~~-------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~ 109 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGND-------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDL 109 (309)
T ss_dssp S-GCC-T-TEEEEEE-S--------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHH
T ss_pred ccccccccceeEEEeecc-------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHH
Confidence 333333457777787733 3 333445567777999999999886652 245667
Q ss_pred HHHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAVD 163 (468)
Q Consensus 151 ~~~~l~~lr~~l~ 163 (468)
..++++++++.++
T Consensus 110 ~~~iv~~~~~~~~ 122 (309)
T PF01207_consen 110 LAEIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHHHH-S
T ss_pred hhHHHHhhhcccc
Confidence 7888888888764
No 169
>PHA03212 serine/threonine kinase US3; Provisional
Probab=33.76 E-value=17 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.2
Q ss_pred cCCCcCCccccCCCccceeee
Q 012216 446 DGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 446 ~~F~~~n~IG~GgfG~VYkg~ 466 (468)
+.|.-...||+|+||.||++.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~ 112 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACI 112 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEE
Confidence 346666789999999999975
No 170
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=33.66 E-value=59 Score=24.58 Aligned_cols=56 Identities=4% Similarity=-0.002 Sum_probs=42.5
Q ss_pred cccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC---------CcchhhHHHHHHHHHHHHH
Q 012216 108 SMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT---------SWDKYNIGILFKEWRAAVD 163 (468)
Q Consensus 108 ~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~---------~~~~~~~~~~l~~lr~~l~ 163 (468)
.........++....+.+.+++++++=--+|.|++-+ .+++.+|-.|+++|...|+
T Consensus 16 ~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 16 RLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 3333444556677778888899999888888887653 4678899999999999886
No 171
>PRK08005 epimerase; Validated
Probab=33.65 E-value=1.7e+02 Score=26.28 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=45.9
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.+|+. .++.+.+.|.|=|-+++|-. .....+++.+|+. + ....+|+-+..
T Consensus 63 vHLMv~~P~~-------~i~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~----G--------~k~GlAlnP~T 117 (210)
T PRK08005 63 FHLMVSSPQR-------WLPWLAAIRPGWIFIHAESV------QNPSEILADIRAI----G--------AKAGLALNPAT 117 (210)
T ss_pred EEeccCCHHH-------HHHHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc----C--------CcEEEEECCCC
Confidence 4556666643 34455567999999999943 1234455555543 2 33555554332
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .+..+.+++|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 221 245567899999999975
No 172
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.50 E-value=1.3e+02 Score=28.88 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
.||+.|+=|.+.+.+ +.+.|+||+=+|+-.|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 488888778776655 4788999999998544
No 173
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=33.35 E-value=98 Score=29.23 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=8.7
Q ss_pred EEEecceeeeeEE
Q 012216 306 VMYNSTYVVNYCS 318 (468)
Q Consensus 306 ~~~d~~~~~~y~~ 318 (468)
..||-++-.||+.
T Consensus 181 alydG~~w~Py~~ 193 (281)
T PF12768_consen 181 ALYDGTSWTPYLL 193 (281)
T ss_pred EEECCCEEEEEEE
Confidence 4567666777765
No 174
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=33.06 E-value=3.9e+02 Score=24.50 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPH 141 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~ 141 (468)
..+...+..+++...++++++++---.. ...|. .+++.|.++. ..+....+.|=|||.++.
T Consensus 47 ~~~~~~i~~l~~~~~~~p~I~T~Rt~~E--GG~~~---~~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 47 DQLAEMITKLKVLQDSFKLLVTYRTKLQ--GGYGQ---FTNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCChhh--CCCCC---CCHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 3455555566665567899999832111 01111 1344444443 344555668999998774
No 175
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=32.45 E-value=3.1e+02 Score=26.68 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=30.3
Q ss_pred CCcEEEEeeEEeeCCCc----eeecC-CccHHHHHHHHHHHHhhCCCcEEEEEEc
Q 012216 47 LFTHLMCGFADVNSTSY----ELSLS-PSDEKQFSNFTDIVKIKNPSITTLLSIG 96 (468)
Q Consensus 47 ~~thii~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~k~~~~~~kvllsiG 96 (468)
.+--||.....+++.+. .+.+. +..-..++.+++.+|++ +.|+++-|.
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~ 101 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLW 101 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeecc
Confidence 45667777777776542 22222 22445677777788887 899998763
No 176
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=32.34 E-value=1.2e+02 Score=27.98 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCC-CcccccccCChhhHHHHHHHHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPN-YSTYSSMASNPSSRKSFIDSSIKIAR 128 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~-~~~~~~~~~~~~~r~~fi~~i~~~l~ 128 (468)
..+..+++.+++.||.+||+++|.=-..-. -..-.-+..|.-+...+...+-++++
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~ 208 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVR 208 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHh
Confidence 345667788999999999999996422100 00012244444444444444444554
No 177
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=32.29 E-value=1.1e+02 Score=28.74 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=33.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.++..|+.+++ ++++..++++||+-||--.-.. ..++++++.++++..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEEK 189 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhhc
Confidence 45667777777 6666666779999998542221 278888888887654
No 178
>PHA03211 serine/threonine kinase US3; Provisional
Probab=31.58 E-value=19 Score=36.69 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.9
Q ss_pred cCCCcCCccccCCCccceeeec
Q 012216 446 DGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 446 ~~F~~~n~IG~GgfG~VYkg~L 467 (468)
.+|.-...||+|+||.||++..
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~ 190 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSH 190 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEE
Confidence 3465667899999999999864
No 179
>PF15069 FAM163: FAM163 family
Probab=31.57 E-value=58 Score=26.95 Aligned_cols=17 Identities=41% Similarity=0.235 Sum_probs=7.9
Q ss_pred eehhhhhHHHHHHHHHH
Q 012216 380 AIVLPITATCILLIGFL 396 (468)
Q Consensus 380 ~i~~~~~~~~~~~~~~~ 396 (468)
+|..+++++++++++++
T Consensus 7 VItGgILAtVILLcIIa 23 (143)
T PF15069_consen 7 VITGGILATVILLCIIA 23 (143)
T ss_pred EEechHHHHHHHHHHHH
Confidence 34444555554444433
No 180
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=31.33 E-value=94 Score=23.26 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHcCCCeeeeeccC----CCC----------CcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccC
Q 012216 127 ARLYGFQGLDLSWPH----ANT----------SWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAY 192 (468)
Q Consensus 127 l~~~~~DGidiD~E~----~~~----------~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~ 192 (468)
|.+++.|.-.+-||- |.. ....+.+..++++..+.+++.... ..||+...... ..
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~------~pvt~g~~~~~-----~~ 70 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS------QPVTSGFWGGD-----WE 70 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT------S-EE--B--S------TT
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC------CcEEeecccCC-----HH
Confidence 556666666666652 220 113467888999998888876543 45665543221 11
Q ss_pred CHHHHh-ccccEEeeccc
Q 012216 193 TVDSIR-QYLNWVHVMTT 209 (468)
Q Consensus 193 ~~~~l~-~~~D~v~lm~y 209 (468)
.+..+. +.+|++.+..|
T Consensus 71 ~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 71 DLEQLQAENLDVISFHPY 88 (88)
T ss_dssp HHHHS--TT-SSEEB-EE
T ss_pred HHHHhchhcCCEEeeecC
Confidence 244555 78898876655
No 181
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=31.30 E-value=16 Score=40.45 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=18.5
Q ss_pred hcCCCcCCccccCCCccceeee
Q 012216 445 TDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 445 T~~F~~~n~IG~GgfG~VYkg~ 466 (468)
-..|+-...||+|+||+||+|+
T Consensus 697 ~~~~~I~~e~G~g~y~~vy~a~ 718 (974)
T KOG1166|consen 697 GEKFCISKEIGEGSYGSVYVAT 718 (974)
T ss_pred ceeEEEEeeeccccceEEEEee
Confidence 3447777899999999999986
No 182
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=31.00 E-value=33 Score=33.22 Aligned_cols=26 Identities=46% Similarity=0.600 Sum_probs=20.0
Q ss_pred ccCHHHHHHHhcCCCcCCccccCCCccceeeec
Q 012216 435 EYSLADIEVATDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 435 ~f~~~~l~~aT~~F~~~n~IG~GgfG~VYkg~L 467 (468)
.++.+||++- +.||+|..|+|||+..
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~H 100 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRH 100 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEE
Confidence 3566777653 5899999999999863
No 183
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.88 E-value=55 Score=32.68 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=39.1
Q ss_pred ccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHH
Q 012216 107 SSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVD 163 (468)
Q Consensus 107 ~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~ 163 (468)
.+.+++...|++.+..|+++|.++|||| -|-..+.-.|+. ..|....+.|...++
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~PS~-k~F~~IFK~LY~~lD 151 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQPSQ-KGFIIIFKWLYLRLD 151 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCCcc-ccHHHHHHHHHhccC
Confidence 4567888999999999999999999998 222222112222 457777777777765
No 184
>PTZ00046 rifin; Provisional
Probab=30.81 E-value=41 Score=32.65 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.3
Q ss_pred hhhhhHHHH
Q 012216 382 VLPITATCI 390 (468)
Q Consensus 382 ~~~~~~~~~ 390 (468)
+.+++++++
T Consensus 318 iaSiiAIvV 326 (358)
T PTZ00046 318 IASIVAIVV 326 (358)
T ss_pred HHHHHHHHH
Confidence 333333333
No 185
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=30.76 E-value=1.9e+02 Score=25.91 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeeeeec-cCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccccc
Q 012216 113 PSSRKSFIDSSIKIARLYGFQGLDLSW-PHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA 191 (468)
Q Consensus 113 ~~~r~~fi~~i~~~l~~~~~DGidiD~-E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (468)
+.....+...+.+.+++.+.+-+.||= .......+...+..++..|...+++.+.. .+++...+... ..
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t------~llt~~~~~~~-~~--- 166 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVT------TLLTSEMPSGS-ED--- 166 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEE------EEEEEEESSSS-SS---
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCE------EEEEEccccCc-cc---
Confidence 345678999999999999999999992 11112245566788899999988766532 34444433211 11
Q ss_pred CCHHHHhc-cccEEeeccccccC
Q 012216 192 YTVDSIRQ-YLNWVHVMTTEYSN 213 (468)
Q Consensus 192 ~~~~~l~~-~~D~v~lm~yd~~~ 213 (468)
.....+.. .+|-|..+.+...+
T Consensus 167 ~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 167 DGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccchhhhcccEEEEEEEEeeC
Confidence 11224455 79999999987654
No 186
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=30.56 E-value=10 Score=37.61 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=13.3
Q ss_pred CccccCCCccceeee
Q 012216 452 NKLGEGGYGPVYKVM 466 (468)
Q Consensus 452 n~IG~GgfG~VYkg~ 466 (468)
+++|+|||..||||.
T Consensus 469 hLLGrGGFSEVyKAF 483 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAF 483 (775)
T ss_pred HHhccccHHHHHHhc
Confidence 579999999999973
No 187
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=30.46 E-value=87 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
.+++..++.|.|-+..|.+.|.-|+.|-+|-|
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp 176 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP 176 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEeCH
Confidence 46788899999999999999999999998865
No 188
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.09 E-value=1.1e+02 Score=28.74 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCeeeeeccCCCCCcch-hhHHHHHHHHHHHHHHHhh
Q 012216 121 DSSIKIARLYGFQGLDLSWPHANTSWDK-YNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~-~~~~~~l~~lr~~l~~~~~ 167 (468)
...++.+.+.|||||+|....+...-+. +....-++++++.+.+.+.
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCC
Confidence 4466889999999999965433210011 1124567888888887663
No 189
>PHA03265 envelope glycoprotein D; Provisional
Probab=29.63 E-value=37 Score=32.49 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 012216 236 EYGITEWI 243 (468)
Q Consensus 236 ~~~v~~~~ 243 (468)
...|++|.
T Consensus 251 ka~V~yW~ 258 (402)
T PHA03265 251 LTWLKFWF 258 (402)
T ss_pred HHHHHHHH
Confidence 34445554
No 190
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=29.62 E-value=2.2e+02 Score=25.92 Aligned_cols=78 Identities=6% Similarity=0.095 Sum_probs=45.2
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.||. ++ ++.+.+.|.|-|-|..|-. ......++.+|+. +.. ....+++-+..
T Consensus 73 vHLMv~~P~---~~----i~~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~----g~~------~kaGlalnP~T 129 (228)
T PRK08091 73 VHLMVRDQF---EV----AKACVAAGADIVTLQVEQT------HDLALTIEWLAKQ----KTT------VLIGLCLCPET 129 (228)
T ss_pred EEeccCCHH---HH----HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC----CCC------ceEEEEECCCC
Confidence 345565552 23 3445566999999999943 1234455555543 210 13455544332
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .+..+.+.+|+|.+||-+
T Consensus 130 p~~----~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 130 PIS----LLEPYLDQIDLIQILTLD 150 (228)
T ss_pred CHH----HHHHHHhhcCEEEEEEEC
Confidence 221 345677889999999986
No 191
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=29.60 E-value=86 Score=25.96 Aligned_cols=54 Identities=7% Similarity=0.029 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeee-ccCCCCCcchhhHHHHHHHHHHHHHH
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLS-WPHANTSWDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD-~E~~~~~~~~~~~~~~l~~lr~~l~~ 164 (468)
-+|+.-....+.+++++++.+-.-|-|| .||..-..+-+....|+..||+..-.
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~ 109 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALL 109 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeec
Confidence 3688888999999999999655567778 67765445667788899999977643
No 192
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=29.59 E-value=44 Score=32.32 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=2.9
Q ss_pred hhhhhHHH
Q 012216 382 VLPITATC 389 (468)
Q Consensus 382 ~~~~~~~~ 389 (468)
++++++++
T Consensus 313 iaSiIAIv 320 (353)
T TIGR01477 313 IASIIAIL 320 (353)
T ss_pred HHHHHHHH
Confidence 33333333
No 193
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=29.51 E-value=1.1e+02 Score=28.97 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=42.0
Q ss_pred cccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCC---CCcchhhHHHHHHHHHHHHHHH
Q 012216 108 SMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHAN---TSWDKYNIGILFKEWRAAVDLE 165 (468)
Q Consensus 108 ~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~---~~~~~~~~~~~l~~lr~~l~~~ 165 (468)
+|+.|++..+-....+.++|.+|+|+|.|.=.-.-. .-+..+.+.+-+.+|-+++++.
T Consensus 139 Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y 199 (394)
T COG0050 139 DMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY 199 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc
Confidence 577788888889999999999999999987432111 1123344777888888888753
No 194
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.35 E-value=5.5e+02 Score=25.08 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCCc-----------c---------cccccCC---hhhHHHHHHHHH
Q 012216 70 SDEKQFSNFTDIVKIKNPSITTLLSIG--GGNNPNYS-----------T---------YSSMASN---PSSRKSFIDSSI 124 (468)
Q Consensus 70 ~~~~~~~~~~~~~k~~~~~~kvllsiG--g~~~~~~~-----------~---------~~~~~~~---~~~r~~fi~~i~ 124 (468)
..-..++++++.+|++ +.|+++-|. |... ... . ....++. .+..+.|++...
T Consensus 75 ~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~-~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 75 SDIPGLRKLAQAIKSK--GAKAILQIFHAGRMA-NPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred hhhHHHHHHHHHHHhC--CCeEEEEecCCCCCC-CccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 3457788888888887 788887762 2211 000 0 0011111 133455665554
Q ss_pred HHHHHcCCCeeeeecc
Q 012216 125 KIARLYGFQGLDLSWP 140 (468)
Q Consensus 125 ~~l~~~~~DGidiD~E 140 (468)
. +++-|||||+|+--
T Consensus 152 ~-a~~aGfDgVeih~a 166 (353)
T cd04735 152 R-AIEAGFDGVEIHGA 166 (353)
T ss_pred H-HHHcCCCEEEEccc
Confidence 4 55689999999863
No 195
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.03 E-value=19 Score=30.15 Aligned_cols=23 Identities=4% Similarity=-0.201 Sum_probs=10.6
Q ss_pred eeeeehhhhhHHHHHHHHHHHhh
Q 012216 377 LLWAIVLPITATCILLIGFLLYY 399 (468)
Q Consensus 377 ~~~~i~~~~~~~~~~~~~~~~~~ 399 (468)
..-+++.+++++.+.+++.++++
T Consensus 47 nknIVIGvVVGVGg~ill~il~l 69 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILAL 69 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHh
Confidence 33344444444455555554433
No 196
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=28.72 E-value=4e+02 Score=24.41 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcC---CCCCCCcccccccCChhhHHHHHHHHHHHHHHc----CCCeeeeeccCCCC
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSIGG---GNNPNYSTYSSMASNPSSRKSFIDSSIKIARLY----GFQGLDLSWPHANT 144 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsiGg---~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~----~~DGidiD~E~~~~ 144 (468)
...+.++++.++++ +++|+|.+-. |.. ....+. ......+.|.+-+..+.++| ..-|++|==| |..
T Consensus 61 ~~~ld~~v~~a~~~--gi~vild~h~~~~w~~-~~~~~~---~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~~ 133 (281)
T PF00150_consen 61 LARLDRIVDAAQAY--GIYVILDLHNAPGWAN-GGDGYG---NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNE-PNG 133 (281)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEEEESTTCSS-STSTTT---THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS-GCS
T ss_pred HHHHHHHHHHHHhC--CCeEEEEeccCccccc-cccccc---cchhhHHHHHhhhhhhccccCCCCcEEEEEecCC-ccc
Confidence 34556667777776 8999998844 421 111111 11222333333344444555 3345444222 332
Q ss_pred Cc--------chhhHHHHHHHHHHHHHHHhh
Q 012216 145 SW--------DKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 145 ~~--------~~~~~~~~l~~lr~~l~~~~~ 167 (468)
.. ....+..+.+++.+++++.+.
T Consensus 134 ~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 134 GNDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp TTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred cCCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 11 226678888888888887654
No 197
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=28.49 E-value=5.2e+02 Score=24.56 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-CCeeeeeccCCCCC-cchhhH
Q 012216 74 QFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWPHANTS-WDKYNI 151 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGidiD~E~~~~~-~~~~~~ 151 (468)
....+++.++++ +..++..+-.+.. +. -.-+.+.-+.+.+.+++-|+..+ +|||-|+.=..... ...+.=
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~--P~----G~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E 117 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAE--PG----GPVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE 117 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE---SE----E-B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeec--CC----CcccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch
Confidence 345566666666 7888877743322 11 12245677888999999999986 99999997643321 122233
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEee
Q 012216 152 GILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHV 206 (468)
Q Consensus 152 ~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~l 206 (468)
..|++++|+.+.. +.-|.+++=... .--+.+.+.+|.+.-
T Consensus 118 G~Ll~rvR~~vGp---------~vpI~~tlDlHa------Nvs~~mv~~ad~~~~ 157 (292)
T PF07364_consen 118 GDLLRRVRAIVGP---------DVPIAATLDLHA------NVSPRMVEAADIIVG 157 (292)
T ss_dssp HHHHHHHHHHHTT---------TSEEEEEE-TT----------HHHHHH-SEEEE
T ss_pred HHHHHHHHHHhCC---------CCeEEEEeCCCC------CccHHHHHhCCEEEE
Confidence 6799999999874 234444432211 223578888887743
No 198
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=28.10 E-value=40 Score=33.67 Aligned_cols=7 Identities=43% Similarity=1.303 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 012216 393 IGFLLYY 399 (468)
Q Consensus 393 ~~~~~~~ 399 (468)
+.|+.+|
T Consensus 384 vGfLcWw 390 (397)
T PF03302_consen 384 VGFLCWW 390 (397)
T ss_pred HHHHhhh
Confidence 3333333
No 199
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.62 E-value=3.9e+02 Score=22.87 Aligned_cols=110 Identities=7% Similarity=0.026 Sum_probs=60.1
Q ss_pred CCCcEEEEeeEEeeCCCcee-ec-----CCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHH
Q 012216 46 ALFTHLMCGFADVNSTSYEL-SL-----SPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSF 119 (468)
Q Consensus 46 ~~~thii~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~f 119 (468)
-.|++||..+.......... .. .......+..+.+.+.+. |+||.++++-+. ..|.. .+.+....+
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~~----~~w~~--~~~~~~~~~ 103 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFDP----DYWDQ--GDLDWEAER 103 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCCc----hhhhc--cCHHHHHHH
Confidence 45888888776554321100 00 001234555566655555 999999998632 23332 454444344
Q ss_pred HHHHHHHHHH-c----CCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 012216 120 IDSSIKIARL-Y----GFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~i~~~l~~-~----~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.+.+++-+.+ | .|.|--|-.|..... .+-..+++.|+..+++..
T Consensus 104 ~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~s 152 (166)
T PF14488_consen 104 NKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQIS 152 (166)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHhC
Confidence 4444443332 3 499999999954331 222566666666666543
No 200
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.39 E-value=2.2e+02 Score=26.01 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=44.1
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.+|. +++ +.+.+.|.|=|-|..|-.. .....+++.+|+. + ....+|+-+..
T Consensus 64 vHLMv~~P~---~~i----~~~~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~~----G--------~kaGlalnP~T 119 (229)
T PRK09722 64 VHLMVTDPQ---DYI----DQLADAGADFITLHPETIN-----GQAFRLIDEIRRA----G--------MKVGLVLNPET 119 (229)
T ss_pred EEEEecCHH---HHH----HHHHHcCCCEEEECccCCc-----chHHHHHHHHHHc----C--------CCEEEEeCCCC
Confidence 355666653 233 3444559999999999321 1233455544432 2 23455544332
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .+..+.+.+|+|.+|+-+
T Consensus 120 ~~~----~l~~~l~~vD~VLvMsV~ 140 (229)
T PRK09722 120 PVE----SIKYYIHLLDKITVMTVD 140 (229)
T ss_pred CHH----HHHHHHHhcCEEEEEEEc
Confidence 221 345677889999999986
No 201
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.20 E-value=24 Score=37.01 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=18.9
Q ss_pred hcCCCcCCccccCCCccceeeec
Q 012216 445 TDGFSIENKLGEGGYGPVYKVMY 467 (468)
Q Consensus 445 T~~F~~~n~IG~GgfG~VYkg~L 467 (468)
.++|.--.+||+|.||.|+.+++
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~ 389 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAEL 389 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEE
Confidence 35577778999999999998875
No 202
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=26.91 E-value=28 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.628 Sum_probs=17.7
Q ss_pred ccCHHHHHHHhcCCCcCCccccCCCccceeee
Q 012216 435 EYSLADIEVATDGFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 435 ~f~~~~l~~aT~~F~~~n~IG~GgfG~VYkg~ 466 (468)
.|+-++|+.- -.||.|.||+|+|..
T Consensus 60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~ 84 (361)
T KOG1006|consen 60 TFTSDNLQDL-------GEIGNGAFGTVNKML 84 (361)
T ss_pred ccccchHHHH-------HHhcCCcchhhhhhh
Confidence 4555555532 369999999999854
No 203
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.82 E-value=2.4e+02 Score=30.49 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-------c---CCCCC----CCc---------cc--------ccccCChhhHHHHHH
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSI-------G---GGNNP----NYS---------TY--------SSMASNPSSRKSFID 121 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-------G---g~~~~----~~~---------~~--------~~~~~~~~~r~~fi~ 121 (468)
..++.+++.+|+. |+.|+|-| | |-+.+ ++. .+ ..-.+.+-.|+=.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4667778888877 99999976 1 11000 000 01 112334678888999
Q ss_pred HHHHHHHHcCCCeeeeeccCC
Q 012216 122 SSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~ 142 (468)
+|.-|+++++.||.-+|.-..
T Consensus 343 sLrYWv~e~hVDGFRFDLa~~ 363 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAGV 363 (697)
T ss_pred HHHHHHHHhCCCceeecchhh
Confidence 999999999999999997643
No 204
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=26.65 E-value=28 Score=26.85 Aligned_cols=7 Identities=14% Similarity=0.078 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 012216 385 ITATCIL 391 (468)
Q Consensus 385 ~~~~~~~ 391 (468)
+++++++
T Consensus 72 ~vg~~~~ 78 (96)
T PTZ00382 72 SVAVVAV 78 (96)
T ss_pred EeehhhH
Confidence 3333333
No 205
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=26.27 E-value=1.3e+02 Score=28.52 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCCeeeeeccCCC--CCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCC
Q 012216 116 RKSFIDSSIKIARLYGFQGLDLSWPHAN--TSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYT 193 (468)
Q Consensus 116 r~~fi~~i~~~l~~~~~DGidiD~E~~~--~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 193 (468)
.+-|-.++..+++-...- +|-.-.|. +.++-....+++++.++.|.+++..-....++-+.+-+|. ..+.
T Consensus 119 p~~f~~QlrAilra~~~g--~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPs------aal~ 190 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEG--NLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPS------AALM 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHHS--EEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHH------HHHT
T ss_pred hhhHHHHHHHHHHHHhhc--CCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhH------HHHH
Confidence 455666666666554322 55545554 3344456667888888888776533122233444444442 1256
Q ss_pred HHHHhccccEEeecccccc
Q 012216 194 VDSIRQYLNWVHVMTTEYS 212 (468)
Q Consensus 194 ~~~l~~~~D~v~lm~yd~~ 212 (468)
..++.+.+|||.|-|-|+.
T Consensus 191 ~~~~~~~~DF~SIGtNDLt 209 (293)
T PF02896_consen 191 ADEFAKEVDFFSIGTNDLT 209 (293)
T ss_dssp HHHHHTTSSEEEEEHHHHH
T ss_pred HHHHHHHCCEEEEChhHHH
Confidence 7889999999999998874
No 206
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=25.89 E-value=72 Score=28.31 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHHHHhh
Q 012216 290 YKEINNRIK 298 (468)
Q Consensus 290 y~~i~~~~~ 298 (468)
...+|+..+
T Consensus 22 ~~~lC~~~~ 30 (202)
T PF06365_consen 22 LQVLCRAFK 30 (202)
T ss_pred HHHHHHHhc
Confidence 445666443
No 207
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=25.85 E-value=5.4e+02 Score=23.84 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEc-CCCCCCCcccccccCChhhHHHHHHHHHHHHHH--------cCCCeeeeeccC
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIG-GGNNPNYSTYSSMASNPSSRKSFIDSSIKIARL--------YGFQGLDLSWPH 141 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiG-g~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~--------~~~DGidiD~E~ 141 (468)
....+...+..|+ +.+++|++-=|- +.+ +...+ ...++|-++..= +++|||-|| |-
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg---~R~~~----------~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~ 115 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYG---SRPLS----------EVKADIDTYASWYGQSEDYGYRVDGIFFD-EA 115 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEcccc---CCCHH----------HHHHHHHHHhhccccccCCCcccceEEEe-cC
Confidence 3345555555564 466899884331 111 22222 233334444433 789999999 65
Q ss_pred CCCCcchhhHHHHHHHHHHHHHH
Q 012216 142 ANTSWDKYNIGILFKEWRAAVDL 164 (468)
Q Consensus 142 ~~~~~~~~~~~~~l~~lr~~l~~ 164 (468)
|.+. .....++.|....+.
T Consensus 116 p~~~----~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 116 PNDY----ANLPYYQNLYNYVKS 134 (253)
T ss_pred CCcH----HHHHHHHHHHHHHHh
Confidence 5442 445556666655554
No 208
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.71 E-value=2.8e+02 Score=24.48 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=46.0
Q ss_pred ccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcc
Q 012216 107 SSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPH 186 (468)
Q Consensus 107 ~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~ 186 (468)
+-|+.+|+. .++-+.+-|.+.+-+++|... + ...+++.+|+ .+ ....+++-+...
T Consensus 70 HmMV~~Peq-------~V~~~a~agas~~tfH~E~~q---~---~~~lv~~ir~----~G--------mk~G~alkPgT~ 124 (224)
T KOG3111|consen 70 HMMVENPEQ-------WVDQMAKAGASLFTFHYEATQ---K---PAELVEKIRE----KG--------MKVGLALKPGTP 124 (224)
T ss_pred EEeecCHHH-------HHHHHHhcCcceEEEEEeecc---C---HHHHHHHHHH----cC--------CeeeEEeCCCCc
Confidence 445666632 344455679999999999432 1 3444444443 33 456666654433
Q ss_pred cccccCCHHHHhccccEEeecccc
Q 012216 187 STAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 187 ~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
.. ++..+.+.+|++.+||-.
T Consensus 125 Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 125 VE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred HH----HHHHhhccccEEEEEEec
Confidence 22 345667889999999974
No 209
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.40 E-value=1.7e+02 Score=29.97 Aligned_cols=80 Identities=8% Similarity=0.133 Sum_probs=53.4
Q ss_pred EEEeeEEeeCCCceeecCCccHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccc--cccCChhhHHHHHHHHHHHHH
Q 012216 51 LMCGFADVNSTSYELSLSPSDEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYS--SMASNPSSRKSFIDSSIKIAR 128 (468)
Q Consensus 51 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~--~~~~~~~~r~~fi~~i~~~l~ 128 (468)
...+|..+-++|.. .+.......+.+++..++++ |++.++++--|+. +..+. .-..|++..+.|++=....++
T Consensus 72 fSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dl--P~~L~~~GGW~n~~~v~~F~~YA~~~f~ 146 (467)
T TIGR01233 72 ISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDT--PEALHSNGDFLNRENIEHFIDYAAFCFE 146 (467)
T ss_pred EecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCC--cHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 44566677776421 23333455678888888887 8999999966654 22221 123467788888888888889
Q ss_pred HcCCCeeee
Q 012216 129 LYGFQGLDL 137 (468)
Q Consensus 129 ~~~~DGidi 137 (468)
++| | |..
T Consensus 147 ~fg-d-Vk~ 153 (467)
T TIGR01233 147 EFP-E-VNY 153 (467)
T ss_pred HhC-C-CCE
Confidence 998 7 753
No 210
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=25.18 E-value=4.4e+02 Score=28.67 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCCcEEE---EEE-cCCCC--CCCccc------------------c-----------cccCChhhHH
Q 012216 73 KQFSNFTDIVKIKNPSITTL---LSI-GGGNN--PNYSTY------------------S-----------SMASNPSSRK 117 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvl---lsi-Gg~~~--~~~~~~------------------~-----------~~~~~~~~r~ 117 (468)
..+..+++.+|++++++|=+ -+| |=|+. ++...+ . -.+-+|+.-.
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 46777888899988877744 344 32332 111111 0 0124677788
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccCCCC--CcchhhHHHHHHHHHHHHHHHh
Q 012216 118 SFIDSSIKIARLYGFQGLDLSWPHANT--SWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 118 ~fi~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
.|-+...++|.+.|+|||-+|-++... ..+...-+++.++..++|.+.-
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~ 435 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASV 435 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765311 0111223456666666665443
No 211
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=24.99 E-value=61 Score=23.79 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=25.8
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHcCCCe
Q 012216 105 TYSSMASNPSSRKSFIDSSIKIARLYGFQG 134 (468)
Q Consensus 105 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DG 134 (468)
.|..+..+++.|++|.++--.++++|+++.
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt~ 37 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLTP 37 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCCH
Confidence 355677899999999999999999998763
No 212
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.94 E-value=2.5e+02 Score=25.05 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-CcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccc
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-SWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTA 189 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~ 189 (468)
-||++. +-+..+++.+.+.|.|+|-|= ++ .-+.++..++++.+|+..+ . +..| .|
T Consensus 5 iDP~k~-e~~~~ia~~v~~~gtDaI~VG----GS~gvt~~~~~~~v~~ik~~~~---l------Pvil---fp------- 60 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDAGTDAIMVG----GSLGIVESNLDQTVKKIKKITN---L------PVIL---FP------- 60 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhcCCCEEEEc----CcCCCCHHHHHHHHHHHHhhcC---C------CEEE---EC-------
Confidence 356555 444558888999999999772 22 1356788888888887532 0 1222 12
Q ss_pred ccCCHHHHhccccEEeeccc
Q 012216 190 AAYTVDSIRQYLNWVHVMTT 209 (468)
Q Consensus 190 ~~~~~~~l~~~~D~v~lm~y 209 (468)
.+...+...+|.+.+|+-
T Consensus 61 --~~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 61 --GNVNGLSRYADAVFFMSL 78 (205)
T ss_pred --CCccccCcCCCEEEEEEe
Confidence 133456788999999884
No 213
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=24.86 E-value=37 Score=21.68 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.3
Q ss_pred CcchhHHHHHHHHHHhccCcC
Q 012216 1 MASKIIILVLHIFIFSESLPA 21 (468)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (468)
|+ |++++.++++.++++.|.
T Consensus 1 Mk-Ki~~~~i~~~~~~L~aCQ 20 (46)
T PF02402_consen 1 MK-KIIFIGIFLLTMLLAACQ 20 (46)
T ss_pred Cc-EEEEeHHHHHHHHHHHhh
Confidence 66 444444444444444443
No 214
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=24.69 E-value=2.3e+02 Score=28.10 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCeeeeecc--CCCCCcchhhHHHHHHHHHHHHHHHhh
Q 012216 122 SSIKIARLYGFQGLDLSWP--HANTSWDKYNIGILFKEWRAAVDLEAR 167 (468)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E--~~~~~~~~~~~~~~l~~lr~~l~~~~~ 167 (468)
..++.+.+.|||||++... +|.. .+...-..-++++++.+.+.+.
T Consensus 36 e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 36 EAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKKALDETGL 82 (382)
T ss_pred HHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHHHHHHhCC
Confidence 4556688899999999743 2322 1111123447889999988764
No 215
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.63 E-value=2.9e+02 Score=27.29 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccc--------------cccCChhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012216 74 QFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYS--------------SMASNPSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~--------------~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~ 139 (468)
.-..+++.+|++.|++. ++.|||... ..+.+. .++..--.-.+-++.+++.+.+..-|.+-+ .
T Consensus 16 lGa~LikaLk~~~~~~e-fvGvgG~~m-~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~-I 92 (381)
T COG0763 16 LGAGLIKALKARYPDVE-FVGVGGEKM-EAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLIL-I 92 (381)
T ss_pred HHHHHHHHHHhhCCCeE-EEEeccHHH-HhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-e
Confidence 34567888999999887 678888433 122222 222222233344566777777788887654 1
Q ss_pred cCCCCCcchhhH-HHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeec
Q 012216 140 PHANTSWDKYNI-GILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVM 207 (468)
Q Consensus 140 E~~~~~~~~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm 207 (468)
|...| ..+.+.||+.... .-+---|.++-|.|.. .....+.+++|++...
T Consensus 93 -------DsPdFnl~vak~lrk~~p~----------i~iihYV~PsVWAWr~-~Ra~~i~~~~D~lLai 143 (381)
T COG0763 93 -------DSPDFNLRVAKKLRKAGPK----------IKIIHYVSPSVWAWRP-KRAVKIAKYVDHLLAI 143 (381)
T ss_pred -------CCCCCchHHHHHHHHhCCC----------CCeEEEECcceeeech-hhHHHHHHHhhHeeee
Confidence 22223 3466667766432 2233334433333332 3467899999998654
No 216
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.61 E-value=3.8e+02 Score=23.35 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCccccccc-CChhhHHHHHHHHHHHHHHcCCCeeee
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMA-SNPSSRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~-~~~~~r~~fi~~i~~~l~~~~~DGidi 137 (468)
-......|++.+++++|++.|++.=--... ...+..-. ...+...+.+..+++-+++.|-..|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~--~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYP--AGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----T--TTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCcc--ccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 345667889999999999998865311111 11222211 123444556666677777766555543
No 217
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.39 E-value=2.2e+02 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
.||+.|+=+.+.+.+++.++|+||+=+|+-.+
T Consensus 136 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 136 TNPAARDWFKQVIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 46889999999999998999999999987543
No 218
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=24.31 E-value=2.6e+02 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=20.5
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPH 141 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~ 141 (468)
.|++.|+=+.+ .++-+.++|+||+-+|+-.
T Consensus 130 tnp~a~~w~~~-~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 130 TNPDACKWYKD-KLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCHHHHHHHHH-HHHHHHHhCCcEEecCCCC
Confidence 46777765544 4445566899999888754
No 219
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=24.25 E-value=29 Score=35.46 Aligned_cols=18 Identities=39% Similarity=0.807 Sum_probs=15.2
Q ss_pred CCcCCccccCCCccceeee
Q 012216 448 FSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 448 F~~~n~IG~GgfG~VYkg~ 466 (468)
|. +.++|+|-||+||-|+
T Consensus 567 f~-devLGSGQFG~VYgg~ 584 (888)
T KOG4236|consen 567 FA-DEVLGSGQFGTVYGGK 584 (888)
T ss_pred hh-HhhccCCcceeeecce
Confidence 54 4699999999999875
No 220
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=24.00 E-value=4.9e+02 Score=23.76 Aligned_cols=88 Identities=3% Similarity=-0.107 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CcchhhHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~~l~ 156 (468)
+.+++++|++.+- + . ...+++.+.+ ++|+|||+.--|.. -.+.+.+.++++
T Consensus 67 ~~~vivnv~~~~~---e-------------e-~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 67 RALVSVNVRFVDL---E-------------E-AYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred cCCEEEEEecCCH---H-------------H-HHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 5689999998542 1 1 1234444544 69999999887762 135566677777
Q ss_pred HHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCH-H-HHhccccEEee
Q 012216 157 EWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTV-D-SIRQYLNWVHV 206 (468)
Q Consensus 157 ~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~-~-~l~~~~D~v~l 206 (468)
.+++. + .-+++-+.+...... ..++ . .....+|.+.|
T Consensus 129 av~~~----~--------~PVsvKiR~~~~~~~-~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 129 KMKEL----N--------KPIFVKIRGNCIPLD-ELIDALNLVDDGFDGIHV 167 (231)
T ss_pred HHHcC----C--------CcEEEEeCCCCCcch-HHHHHHHHHHcCCCEEEE
Confidence 77721 1 236666654321101 0111 1 12456899988
No 221
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.94 E-value=1.4e+02 Score=27.75 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHH
Q 012216 123 SIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWR 159 (468)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr 159 (468)
+++.+..-|||.|-||.|+-. -+.+...++++..+
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~i~a~~ 66 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAP--NDVSTFIPQLMALK 66 (256)
T ss_pred HHHHHHhcCCCEEEEccccCC--CCHHHHHHHHHHHh
Confidence 677788889999999999864 45555555555543
No 222
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=23.90 E-value=6.7e+02 Score=24.30 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----Ccchhh
Q 012216 76 SNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----SWDKYN 150 (468)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~~ 150 (468)
..+.+.++....++.+.+|||+... ...+..-+.|+..+-.+- . ..|.++|+.--|.. .++.+.
T Consensus 122 ~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~~ 190 (335)
T TIGR01036 122 DVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKAE 190 (335)
T ss_pred HHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHHH
Confidence 3444445544557889999987421 011223345555544443 3 38999999876653 245567
Q ss_pred HHHHHHHHHHHHH
Q 012216 151 IGILFKEWRAAVD 163 (468)
Q Consensus 151 ~~~~l~~lr~~l~ 163 (468)
+.++++.+|+...
T Consensus 191 ~~~i~~~V~~~~~ 203 (335)
T TIGR01036 191 LRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888775
No 223
>PLN02784 alpha-amylase
Probab=23.67 E-value=3.7e+02 Score=29.76 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
....+..+++.+|++ +++|++-+
T Consensus 566 T~~ELk~LI~a~H~~--GIkVIlDi 588 (894)
T PLN02784 566 TIDELKDLVKSFHEV--GIKVLGDA 588 (894)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEE
Confidence 567889999989988 89999865
No 224
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.61 E-value=3.3e+02 Score=29.93 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHcCCCeeeeecc---------CCCC--Cc-----chhhHHHHHHHHHHHHHHHhhccCCCcceEEE
Q 012216 115 SRKSFIDSSIKIARLYGFQGLDLSWP---------HANT--SW-----DKYNIGILFKEWRAAVDLEARNNSSKSQLILT 178 (468)
Q Consensus 115 ~r~~fi~~i~~~l~~~~~DGidiD~E---------~~~~--~~-----~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls 178 (468)
..+.|++... ...+-|||||+|+-- .|.. .. +-+|=..|+.|+-+++++.- .+++.|+
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~-----~~~~~v~ 622 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVW-----PAEKPMS 622 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhc-----CCCCeeE
Confidence 3455665544 445679999999866 2321 11 12233455555444444321 1246777
Q ss_pred EEeecCcccccccCCH-------HHHhcc-ccEEeec
Q 012216 179 AEVAYSPHSTAAAYTV-------DSIRQY-LNWVHVM 207 (468)
Q Consensus 179 ~a~~~~~~~~~~~~~~-------~~l~~~-~D~v~lm 207 (468)
+-+.+.... ..+++. +.+.+. +|+|+|-
T Consensus 623 ~ri~~~~~~-~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 623 VRISAHDWV-EGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred EEEcccccc-CCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 777743221 112221 233333 7999875
No 225
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=23.57 E-value=5.5e+02 Score=23.37 Aligned_cols=55 Identities=5% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCC-----------CcchhhHHHHHH
Q 012216 88 SITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANT-----------SWDKYNIGILFK 156 (468)
Q Consensus 88 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~~l~ 156 (468)
+..+.+.|.|.+. .....+++.+.++ .|+|||+..-|.. -.+.+...++++
T Consensus 72 ~~p~~vqi~g~~~-----------------~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~ 133 (233)
T cd02911 72 NVLVGVNVRSSSL-----------------EPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIK 133 (233)
T ss_pred CCeEEEEecCCCH-----------------HHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHH
Confidence 5688889887432 2223455566665 5999999986652 123455666677
Q ss_pred HHHH
Q 012216 157 EWRA 160 (468)
Q Consensus 157 ~lr~ 160 (468)
++|+
T Consensus 134 avr~ 137 (233)
T cd02911 134 ALKE 137 (233)
T ss_pred HHHh
Confidence 7665
No 226
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.35 E-value=1.5e+02 Score=27.79 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHH
Q 012216 123 SIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWR 159 (468)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr 159 (468)
+++.+...|||.|-||.|+-. -+.+.+..+++..+
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~--~~~~~l~~~i~a~~ 65 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAP--NTIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHHHcCCCEEEEccccCC--CCHHHHHHHHHHHH
Confidence 667778889999999999864 45555555555544
No 227
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=23.19 E-value=70 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHH
Q 012216 120 IDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWR 159 (468)
Q Consensus 120 i~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr 159 (468)
|-.++++|-+.|.| || -+.+++|++|+.++-
T Consensus 11 Iia~aSiLIKfg~d--dI-------l~~q~~FIaFLNElG 41 (91)
T PF09010_consen 11 IIAVASILIKFGRD--DI-------LENQELFIAFLNELG 41 (91)
T ss_dssp HHHHHHHHHHTTTH--HH-------HTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcChH--HH-------HHhHHHHHHHHHHhc
Confidence 34567788888888 44 267788999988864
No 228
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=22.72 E-value=5.9e+02 Score=26.70 Aligned_cols=136 Identities=16% Similarity=0.255 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHhhCCCcEEE--EEEcCCCC------CC-Ccc---cccccCChhhHHHHHHHHHHHHHHcCCCeeeee
Q 012216 71 DEKQFSNFTDIVKIKNPSITTL--LSIGGGNN------PN-YST---YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS 138 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvl--lsiGg~~~------~~-~~~---~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD 138 (468)
.++++..+.+.+.+.+.+.-|+ +-|||.-. +. .+. |..+--.-+..+-|-.++..+++.-.+-.+-|=
T Consensus 311 EeEQ~~aY~~vlea~~g~pviiRTlDiGGDK~lpyl~lp~E~NPfLG~RaIRl~l~~~~if~tQLRAilRAS~~G~l~IM 390 (574)
T COG1080 311 EEEQFEAYKAVLEAMGGKPVIIRTLDIGGDKPLPYLNLPKEENPFLGYRAIRLSLERPEIFRTQLRAILRASAHGNLRIM 390 (574)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEecccCCCCcCCCCCCccccCchhhhHHHHHhhccHHHHHHHHHHHHHhhccCCeEEE
Confidence 3456666666666655333333 56788432 00 000 111111234566788888888888777666664
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEEeecccccc
Q 012216 139 WPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWVHVMTTEYS 212 (468)
Q Consensus 139 ~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v~lm~yd~~ 212 (468)
|-...+-++.......+.+.++.|+.++.. ...+..|-+-+-.+ ...+-.+.+++.+|||.|-|-|+-
T Consensus 391 ~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~--~~~~i~lGiMIEvP----sAa~~a~~lakevDFfSIGTNDLt 458 (574)
T COG1080 391 FPMIASLEEIRWAKALLEEAKQELRAEGLA--FDEKIELGIMIEVP----SAALIADQLAKEVDFFSIGTNDLT 458 (574)
T ss_pred EeccccHHHHHHHHHHHHHHHHHHHhcCCc--cccccceeEEEehh----HHHHHHHHHHHhCCEeeecccHHH
Confidence 444333344445566777777777776643 11123344433311 112446789999999999888864
No 229
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=22.45 E-value=3e+02 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCeeeeeccCC
Q 012216 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWPHA 142 (468)
Q Consensus 111 ~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~ 142 (468)
...+.|..=+++.+++...++|-||.++.+-.
T Consensus 222 ~~~d~r~~Si~~Av~fA~~~nL~Giv~~~~~L 253 (300)
T cd08578 222 NEADPRSRSIKEAVRFAKNNNLLGLILPYSLL 253 (300)
T ss_pred cccCchhhhHHHHHHHHHHcCCcEEEecHHHH
Confidence 34568899999999999999999999987743
No 230
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.39 E-value=3.3e+02 Score=24.71 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=39.6
Q ss_pred HHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhccccEE
Q 012216 125 KIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLNWV 204 (468)
Q Consensus 125 ~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D~v 204 (468)
+.+.+.|.|=|-+..|-. .....+++.+|+. + ....+++-+..... .+..+.+.+|+|
T Consensus 79 ~~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~----g--------~k~GlalnP~T~~~----~i~~~l~~vD~V 136 (223)
T PRK08745 79 PDFADAGATTISFHPEAS------RHVHRTIQLIKSH----G--------CQAGLVLNPATPVD----ILDWVLPELDLV 136 (223)
T ss_pred HHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC----C--------CceeEEeCCCCCHH----HHHHHHhhcCEE
Confidence 444556999999999942 2244556655543 2 23444444322211 245677899999
Q ss_pred eeccccc
Q 012216 205 HVMTTEY 211 (468)
Q Consensus 205 ~lm~yd~ 211 (468)
.+||-+-
T Consensus 137 lvMtV~P 143 (223)
T PRK08745 137 LVMSVNP 143 (223)
T ss_pred EEEEECC
Confidence 9999863
No 231
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.89 E-value=4.1e+02 Score=24.03 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=44.7
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.+| ...++..-+.|.|-|-+..|-. . ..-..++.+|+. + ....+++-+..
T Consensus 66 vHLMV~~p-------~~~i~~fa~agad~It~H~E~~---~---~~~r~i~~Ik~~----G--------~kaGv~lnP~T 120 (220)
T COG0036 66 VHLMVENP-------DRYIEAFAKAGADIITFHAEAT---E---HIHRTIQLIKEL----G--------VKAGLVLNPAT 120 (220)
T ss_pred EEEecCCH-------HHHHHHHHHhCCCEEEEEeccC---c---CHHHHHHHHHHc----C--------CeEEEEECCCC
Confidence 45666666 2234455567999999999921 2 234455555543 2 23444443222
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .+..+.+.+|+|.+||-+
T Consensus 121 p~~----~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 121 PLE----ALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred CHH----HHHHHHhhCCEEEEEeEC
Confidence 221 245667889999999976
No 232
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=21.86 E-value=2.8e+02 Score=26.07 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCeeeeeccCCC----------CCcchhhHHHHHHHHHHHHHHHh
Q 012216 118 SFIDSSIKIARLYGFQGLDLSWPHAN----------TSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 118 ~fi~~i~~~l~~~~~DGidiD~E~~~----------~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
..+.+-.+-|...|||||-||+--+- ..........|+.++++...+.+
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~ 184 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAAN 184 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 34455666677789999999974221 12334567888999988887643
No 233
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.78 E-value=7.8e+02 Score=24.25 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEc
Q 012216 72 EKQFSNFTDIVKIKNPSITTLLSIG 96 (468)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsiG 96 (468)
...++.+.+..|++ +.|+++-|.
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~ 104 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLW 104 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEec
Confidence 56777888888887 788888774
No 234
>PHA03207 serine/threonine kinase US3; Provisional
Probab=21.76 E-value=36 Score=33.70 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.4
Q ss_pred CCCcCCccccCCCccceeee
Q 012216 447 GFSIENKLGEGGYGPVYKVM 466 (468)
Q Consensus 447 ~F~~~n~IG~GgfG~VYkg~ 466 (468)
.|.-...||+|+||.||++.
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~ 112 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCT 112 (392)
T ss_pred ceEEEEeecCCCCeEEEEEE
Confidence 35556789999999999874
No 235
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.68 E-value=1.4e+02 Score=18.38 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=3.0
Q ss_pred CcchhH
Q 012216 1 MASKII 6 (468)
Q Consensus 1 m~~~~~ 6 (468)
|+...+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 554444
No 236
>PRK12677 xylose isomerase; Provisional
Probab=21.34 E-value=2.8e+02 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCeeeeeccCC--CCCcchhhHHHHHHHHHHHHHHHh
Q 012216 120 IDSSIKIARLYGFQGLDLSWPHA--NTSWDKYNIGILFKEWRAAVDLEA 166 (468)
Q Consensus 120 i~~i~~~l~~~~~DGidiD~E~~--~~~~~~~~~~~~l~~lr~~l~~~~ 166 (468)
....+..+.+.||+||.|..+.+ -. .+...-...++++++.+.+.+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~-~~~~~~~~~~~~lk~~l~~~G 80 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFG-ATDAERDRIIKRFKKALDETG 80 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCC-CChhhhHHHHHHHHHHHHHcC
Confidence 45678899999999999975522 21 111112246788888888766
No 237
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=21.21 E-value=5e+02 Score=21.76 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEE-EEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeeee
Q 012216 71 DEKQFSNFTDIVKIKNPSITTLL-SIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS 138 (468)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvll-siGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD 138 (468)
-...+..+++.+++++|+.+|++ ++--... ... .........+++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~---~~~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE---EDE-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc---ccc-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 34567778888888889998774 3321111 110 0112245677888888888888887666664
No 238
>PLN02334 ribulose-phosphate 3-epimerase
Probab=21.13 E-value=3.9e+02 Score=24.10 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhcc-
Q 012216 122 SSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQY- 200 (468)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~- 200 (468)
..++.+.+.|.|||-+..|. .. . +.....+++++.. +..+.+++.+. ... -....+.+.
T Consensus 79 d~~~~~~~~gad~v~vH~~q-~~-~--d~~~~~~~~i~~~------------g~~iGls~~~~--t~~--~~~~~~~~~~ 138 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQ-AS-T--IHLHRLIQQIKSA------------GMKAGVVLNPG--TPV--EAVEPVVEKG 138 (229)
T ss_pred HHHHHHHHcCCCEEEEeecc-cc-c--hhHHHHHHHHHHC------------CCeEEEEECCC--CCH--HHHHHHHhcc
Confidence 34555677899999888774 11 1 2233444444321 23455554321 111 023455677
Q ss_pred -ccEEeecccc
Q 012216 201 -LNWVHVMTTE 210 (468)
Q Consensus 201 -~D~v~lm~yd 210 (468)
+|||.+|+..
T Consensus 139 ~~Dyi~~~~v~ 149 (229)
T PLN02334 139 LVDMVLVMSVE 149 (229)
T ss_pred CCCEEEEEEEe
Confidence 9999999864
No 239
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.98 E-value=1.8e+02 Score=26.91 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=25.2
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHH
Q 012216 123 SIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWR 159 (468)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr 159 (468)
+++.+..-|||.|-||.|+-. -+.+.+..+++..+
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~~~a~~ 59 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAP--NDVLTFIPQLMALK 59 (249)
T ss_pred HHHHHHhcCCCEEEEecccCC--CCHHHHHHHHHHHh
Confidence 677778889999999999864 34455555555443
No 240
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=20.86 E-value=4.5e+02 Score=26.01 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcc--------------cccccCChhhHHHHHHHHHHHHHHcCCCeeeeec
Q 012216 74 QFSNFTDIVKIKNPSITTLLSIGGGNNPNYST--------------YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSW 139 (468)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~--------------~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~ 139 (468)
.-..+++.+|+++|++. +..+||... .... |...+..=-.-.+..+.+++.+.+..-|-+.+ .
T Consensus 13 ~ga~Li~~Lk~~~p~~~-~~GvGG~~M-~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl-I 89 (373)
T PF02684_consen 13 HGARLIRALKARDPDIE-FYGVGGPRM-QAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL-I 89 (373)
T ss_pred HHHHHHHHHHhhCCCcE-EEEEechHH-HhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-e
Confidence 34567888999999998 567787432 1111 22333333344566788899999999997755 2
Q ss_pred cCCCCCcchhhH-HHHHHHHHHHHHHHhhccCCCcceEEEEEeecCccccccc-CCHHHHhccccEEeec
Q 012216 140 PHANTSWDKYNI-GILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAA-YTVDSIRQYLNWVHVM 207 (468)
Q Consensus 140 E~~~~~~~~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~-~~~~~l~~~~D~v~lm 207 (468)
.+|+ | ..+.+.+|+. +. +.-+---++ |..|.++ ...+.+.+++|.+...
T Consensus 90 D~pg-------FNlrlak~lk~~----~~------~~~viyYI~--PqvWAWr~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 90 DYPG-------FNLRLAKKLKKR----GI------PIKVIYYIS--PQVWAWRPGRAKKIKKYVDHLLVI 140 (373)
T ss_pred CCCC-------ccHHHHHHHHHh----CC------CceEEEEEC--CceeeeCccHHHHHHHHHhheeEC
Confidence 2332 2 2344444443 21 111223334 3344443 5678999999998654
No 241
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=20.52 E-value=3.6e+02 Score=24.32 Aligned_cols=76 Identities=7% Similarity=-0.001 Sum_probs=45.2
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCc
Q 012216 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSP 185 (468)
Q Consensus 106 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (468)
.+-|+.+|+ +|+ +.+.+.|.|=|-+..|-. .....+++.+|+. + ....+++.+..
T Consensus 63 vHLMv~~p~---~~i----~~~~~~gad~i~~H~Ea~------~~~~~~l~~ik~~----g--------~k~GlalnP~T 117 (220)
T PRK08883 63 VHLMVKPVD---RII----PDFAKAGASMITFHVEAS------EHVDRTLQLIKEH----G--------CQAGVVLNPAT 117 (220)
T ss_pred EEeccCCHH---HHH----HHHHHhCCCEEEEcccCc------ccHHHHHHHHHHc----C--------CcEEEEeCCCC
Confidence 345565552 333 444557999999999942 2244555555542 2 23445544332
Q ss_pred ccccccCCHHHHhccccEEeecccc
Q 012216 186 HSTAAAYTVDSIRQYLNWVHVMTTE 210 (468)
Q Consensus 186 ~~~~~~~~~~~l~~~~D~v~lm~yd 210 (468)
... .+..+.+.+|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 118 PLH----HLEYIMDKVDLILLMSVN 138 (220)
T ss_pred CHH----HHHHHHHhCCeEEEEEec
Confidence 221 345678899999999976
No 242
>PF15345 TMEM51: Transmembrane protein 51
Probab=20.38 E-value=1.2e+02 Score=27.37 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=3.9
Q ss_pred CHHHHHH
Q 012216 437 SLADIEV 443 (468)
Q Consensus 437 ~~~~l~~ 443 (468)
+|+|++.
T Consensus 126 SYEEvv~ 132 (233)
T PF15345_consen 126 SYEEVVN 132 (233)
T ss_pred ChHHHHh
Confidence 4666553
No 243
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.33 E-value=4.9e+02 Score=21.67 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCCCeeee
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGidi 137 (468)
..+..+++.+++++|+.+|++.--- .. . ..........+++-+.+.++.+++++.=||+
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~~~~~-p~--~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVVQSIL-PV--G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecC-Cc--C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4556666667777777777763110 00 0 0111223444566666666666666655544
No 244
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=20.32 E-value=6e+02 Score=23.00 Aligned_cols=67 Identities=12% Similarity=0.229 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEcCCCCCC---Cccccccc----CChhhHHHHHHHHHHHHHHcCCCeeeeecc
Q 012216 73 KQFSNFTDIVKIKNPSITTLLSIGGGNNPN---YSTYSSMA----SNPSSRKSFIDSSIKIARLYGFQGLDLSWP 140 (468)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsiGg~~~~~---~~~~~~~~----~~~~~r~~fi~~i~~~l~~~~~DGidiD~E 140 (468)
++++.+++.+|...|..+|++---+--+.. .......+ +..+.-..+++..+++.++-|+++||+ |-
T Consensus 100 dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl-ws 173 (245)
T KOG3035|consen 100 DNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL-WS 173 (245)
T ss_pred HHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH-Hh
Confidence 456667777888778888776433322100 01122222 234566778999999999999999999 54
No 245
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=20.12 E-value=4.3e+02 Score=23.66 Aligned_cols=78 Identities=8% Similarity=-0.049 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCeeeeeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCCcceEEEEEeecCcccccccCCHHHHhcccc
Q 012216 123 SIKIARLYGFQGLDLSWPHANTSWDKYNIGILFKEWRAAVDLEARNNSSKSQLILTAEVAYSPHSTAAAYTVDSIRQYLN 202 (468)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~~D 202 (468)
+++.+...|+|-|-||+|+...+.+++.=...++++-..+..... .+..+-+.++......- .-|+..+..-+|
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-----~~~~~~VRvn~~~~~~~-~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-----AGSEIIVRVNSLDSPHI-ERDLEALDAGAD 86 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-----SSSEEEEE-SSTTCHHH-HHHHHHHHTTSS
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-----ccccceecCCCCCcchh-hhhhhhcccCCC
Confidence 455566789999999999877555554433344443333332111 11356666664321111 112234455566
Q ss_pred EEee
Q 012216 203 WVHV 206 (468)
Q Consensus 203 ~v~l 206 (468)
.|.+
T Consensus 87 gI~l 90 (221)
T PF03328_consen 87 GIVL 90 (221)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6644
No 246
>PLN02411 12-oxophytodienoate reductase
Probab=20.11 E-value=4.9e+02 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=25.3
Q ss_pred EEEEeeEEeeCCCc----eeec-CCccHHHHHHHHHHHHhhCCCcEEEEEE
Q 012216 50 HLMCGFADVNSTSY----ELSL-SPSDEKQFSNFTDIVKIKNPSITTLLSI 95 (468)
Q Consensus 50 hii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (468)
-||-....+++++. .+.+ .+...+.++++.+.+|++ +.|+++-|
T Consensus 59 LIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 59 FLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred EEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 34555555555431 1112 222345667777777777 88888776
Done!