BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012217
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/483 (46%), Positives = 300/483 (62%), Gaps = 41/483 (8%)
Query: 7 ACSKVHAVCIPSPFQSHIXXXXXXXXXXXXXGFHITFVNTEFNHRRLLKARGQHSLDGLP 66
A K H V IP P Q HI GFHITFVNTE+NH+RLLK+RG + DG
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 67 SFRFEAIPDGLPASSDESPTAQDAYSL--------------------------------- 93
F FE+IPDGL + +QD +L
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 94 DGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYL 153
D + FTI AA++ LP VL+F+ SACS + F++F E+G+ P K D+S LT L
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK---DESYLTNGCL 181
Query: 154 NSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 213
+ +DWIPG+K+ R++D+ FI++T+P D+M +E + +K + I+++TF+ LE V
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 214 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIY 273
+NALS P ++ IGPL LL QT Q L+S+ NL KE+TECL WL+ KEP SV+Y
Sbjct: 242 INALSSTIPS-IYPIGPLPSLLKQTP-QIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 274 VNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS 333
VNFGS M +QL+E A GL N FLWIIRPDLV G + +EF + ++G +AS
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS 359
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 393
WCPQ++VL HPSIGGFLTHCGWNS ES+C+GVPM+CWPF DQPT+ R++CNEW +GME
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 394 INGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 453
I D +V R E+ KL+ E++ G+KGK+M+ KAME K AEE P G S +NL+K++ +
Sbjct: 420 I---DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKD 476
Query: 454 ILL 456
+LL
Sbjct: 477 VLL 479
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 182/381 (47%), Gaps = 49/381 (12%)
Query: 85 PTA--QDAYSLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKVL 142
PTA D + D F A + +P +F+ +A F E
Sbjct: 111 PTALVVDLFGTDAF-----DVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET-------- 157
Query: 143 ADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAII 202
SC +E L+ +PG + +D + D KD + + T+ +A I+
Sbjct: 158 --VSCEFRELTEPLM--LPGCVPVAGKDF--LDPAQDRKDDAYKWLLHNTKRYKEAEGIL 211
Query: 203 IHTFDALEQQVLNALS--FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECL 260
++TF LE + AL + ++ +GPL + Q +Q EE+ECL
Sbjct: 212 VNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ------------TEESECL 259
Query: 261 QWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR-PDLV--------- 310
+WLD + SV+YV+FGS + +QL E+A+GL +S FLW+IR P +
Sbjct: 260 KWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSH 319
Query: 311 --TGETADLPAEFEVKAKEKGFVAS-WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 367
T LP F + K++GFV W PQ +VL HPS GGFLTHCGWNS +ES+ SG+P
Sbjct: 320 SQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIP 379
Query: 368 MICWPFTGDQPTNGRYVCNEWGVGMEIN-GDDEDVIRNEVEKLVREMMEGEKGKQMRNKA 426
+I WP +Q N + + + GDD V R EV ++V+ +MEGE+GK +RNK
Sbjct: 380 LIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKM 439
Query: 427 MEWKGLAEEAAAPHGSSSLNL 447
E K A G+S+ L
Sbjct: 440 KELKEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 186/403 (46%), Gaps = 31/403 (7%)
Query: 53 LLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLDGFLPFTITAAQQLGLPIV 112
+ R Q ++ E+ G+ + E+ D F+ F A ++G+ +
Sbjct: 78 VFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWL 137
Query: 113 LFFTISACSFMGFKQFQTFKEK-GLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDL 171
F+T S +EK G+ ++ D+ L+++IPGM +R RDL
Sbjct: 138 PFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE----------LLNFIPGMSKVRFRDL 187
Query: 172 PSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPL 231
I + + + + KA+A+ I++F+ L+ + N L +L IGP
Sbjct: 188 QEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYL-NIGPF 246
Query: 232 QLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 291
L+ ++ T CLQWL ++P SV+Y++FG+ +++ ++
Sbjct: 247 NLITPPP-------------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALS 293
Query: 292 MGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLT 351
L S PF+W +R LP F K + G V W PQ EVL H ++G F+T
Sbjct: 294 EALEASRVPFIWSLRDK----ARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVT 349
Query: 352 HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 411
HCGWNS+ ES+ GVP+IC PF GDQ NGR V + +G+ I G ++ +
Sbjct: 350 HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGG--VFTKSGLMSCFD 407
Query: 412 EMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 454
+++ EKGK++R + A+ A P GSS+ N LV+ +
Sbjct: 408 QILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 27/298 (9%)
Query: 157 IDWIPGMKDIRIRDLP-SFIQSTDP--KDMMFNLCVEATENASKASAIIIHTFDALEQQV 213
ID +PG +++ DLP I+ D M+ + +E +A+A+ I++F + +
Sbjct: 176 IDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLEL----PRANAVAINSFATIHPLI 231
Query: 214 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIY 273
N L+ F L +GP L Q + D E CL+WLD E SV+Y
Sbjct: 232 ENELNSKF-KLLLNVGPFNLTTPQRKVSD-------------EHGCLEWLDQHENSSVVY 277
Query: 274 VNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS 333
++FGS + +L +A L PF+W R D LP F + K KG + +
Sbjct: 278 ISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKTKGKIVA 333
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 393
W PQ E+LKH S+G FLTH GWNS++E + GVPMI PF GDQ N + E + +
Sbjct: 334 WAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN--TILTESVLEIG 391
Query: 394 INGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 451
+ D+ + + ++K + M EKG MR K ++ K A +A +G+S+++ L+
Sbjct: 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 188/381 (49%), Gaps = 50/381 (13%)
Query: 93 LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKVLADKSCLTKE 151
LD F I + G+P LF T S +GF + K + ++ + D S +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNR---QIEEVFDDSDRDHQ 172
Query: 152 YLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 209
LN IPG+ + +PS + + KD + + E II++TF L
Sbjct: 173 LLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 210 EQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLD 264
EQ ++AL + H ++ +GPL L Q + L+ ++L+ L+WLD
Sbjct: 224 EQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLD 271
Query: 265 CKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE- 322
+ KSV+++ FGS + Q+ E+A+GL +S FLW + E P F
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLE 326
Query: 323 -VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNG 381
++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q N
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 382 RYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 437
+ EWGVG+ + D + V E+EK ++++M +K + K E K ++ A
Sbjct: 387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAV 444
Query: 438 APHGSSSLNLDKLVNEILLSN 458
GSS +++ KL+++I SN
Sbjct: 445 VDGGSSLISVGKLIDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 50/377 (13%)
Query: 93 LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKVLADKSCLTKE 151
LD F I + G+P LF T S +GF + K + ++ + D S +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNR---QIEEVFDDSDRDHQ 172
Query: 152 YLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 209
LN IPG+ + +PS + + KD + + E II++TF L
Sbjct: 173 LLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 210 EQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLD 264
EQ ++AL + H ++ +GPL L Q + L+ ++L+ L+WLD
Sbjct: 224 EQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLD 271
Query: 265 CKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE- 322
+ KSV+++ FGS + Q+ E+A+GL +S FLW + E P F
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLE 326
Query: 323 -VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNG 381
++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q N
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 382 RYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 437
+ EWGVG+ + D + V E+EK ++++M +K + K E K ++ A
Sbjct: 387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAV 444
Query: 438 APHGSSSLNLDKLVNEI 454
GSS +++ KL+++I
Sbjct: 445 VDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 380
W PQ ++L HP F+TH G N I E++ G+P + P DQP N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 331 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 390
V W PQ ++L S F+TH G S +E+L + VPM+ P +Q N + E G+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 391 GMEINGD 397
G I D
Sbjct: 366 GRHIPRD 372
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 255 EETECLQWLDCKE-PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGE 313
E+ + WL ++ + ++Y+ G+ + L GL + L P L
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 314 TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 373
++PA ++ SW PQ +L H + + H G + + +L +GVP + +P+
Sbjct: 287 LGEVPANVRLE--------SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 374 TGD 376
GD
Sbjct: 337 AGD 339
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 321 FEVKAKEKGFVASWCPQEE-----------------VLKHPSIGGFLTHCGWNSIVESLC 363
FE KA++ GF S+ E V K +GG + G ++++E C
Sbjct: 241 FEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300
Query: 364 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR-NEVEKLVREMMEGEKGKQM 422
G+P+I P+T ++ E G G E+ + E V + E+ + +E+ EK +++
Sbjct: 301 WGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVKNETELVTKLTELLSVKKEIKVEEKSREI 359
Query: 423 RNKAME 428
+ +E
Sbjct: 360 KGCYLE 365
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 262 WLDCKEPKSVIYVNFGSFIFMNKQQLIEV--AMGLVNSNHPFLWIIRPDLVTGETADLPA 319
W + V+ V+ GS E A G + H L I R + E +LP
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPD 283
Query: 320 EFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQ 377
EV W PQ +L+ + F+TH G E L + PMI P DQ
Sbjct: 284 NVEVH--------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 393
W P VL H LTH +++E+ +GVP++ P + E G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 394 INGD--DEDVIRNEVEKL 409
+ D + IR VE+L
Sbjct: 346 LRPDQLEPASIREAVERL 363
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 393
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 394 INGDDED 400
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 334 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 393
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 394 INGDDED 400
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 308 DLVTGET-ADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 366
DLVT + + E E +A+++ F A WC EE++ H + HC E + +GV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|3LFH|A Chain A, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|B Chain B, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|C Chain C, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|D Chain D, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|E Chain E, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|F Chain F, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
Length = 144
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 390 VGMEINGDDEDVIRNEVEKLVREMMEGEK 418
VG+ + GD+ +V+R EVEK+++E ++ +K
Sbjct: 35 VGLNL-GDNIEVVRKEVEKIIKEKLQEDK 62
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 331 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 390
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 391 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 437
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 331 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 390
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 391 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 437
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 260 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 310
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 260 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 310
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 287 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 321
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 210 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 243
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 287 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 321
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 209 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,868,371
Number of Sequences: 62578
Number of extensions: 574337
Number of successful extensions: 1228
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 25
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)