Query 012218
Match_columns 468
No_of_seqs 442 out of 1661
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 00:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 3.9E-20 8.4E-25 158.6 10.2 99 270-396 10-109 (109)
2 cd01518 RHOD_YceA Member of th 99.8 7.4E-20 1.6E-24 154.6 9.4 99 271-394 3-101 (101)
3 cd01527 RHOD_YgaP Member of th 99.8 2.5E-19 5.3E-24 150.5 10.0 97 271-399 3-99 (99)
4 PRK00162 glpE thiosulfate sulf 99.8 2.3E-19 5.1E-24 153.5 9.8 102 270-402 5-106 (108)
5 PLN02160 thiosulfate sulfurtra 99.8 5.2E-19 1.1E-23 159.3 10.6 114 270-403 15-130 (136)
6 cd01523 RHOD_Lact_B Member of 99.8 4.4E-19 9.5E-24 149.4 9.3 99 272-393 1-99 (100)
7 cd01534 4RHOD_Repeat_3 Member 99.8 4.5E-19 9.8E-24 148.4 9.1 94 272-394 1-95 (95)
8 cd01448 TST_Repeat_1 Thiosulfa 99.8 6E-19 1.3E-23 153.5 9.9 110 272-396 2-122 (122)
9 cd01519 RHOD_HSP67B2 Member of 99.8 4.2E-19 9.1E-24 150.1 8.0 105 273-394 2-106 (106)
10 PRK07411 hypothetical protein; 99.8 7.8E-19 1.7E-23 183.2 9.8 182 189-399 176-386 (390)
11 PRK07878 molybdopterin biosynt 99.8 5.3E-19 1.1E-23 184.5 8.4 179 188-398 183-387 (392)
12 cd01449 TST_Repeat_2 Thiosulfa 99.8 8.9E-19 1.9E-23 151.1 8.2 106 272-393 1-117 (118)
13 cd01521 RHOD_PspE2 Member of t 99.8 2.2E-18 4.7E-23 148.4 10.5 101 269-399 7-110 (110)
14 PRK11493 sseA 3-mercaptopyruva 99.8 6.9E-19 1.5E-23 175.4 8.3 217 160-402 6-280 (281)
15 PLN02723 3-mercaptopyruvate su 99.8 1.2E-18 2.5E-23 177.3 9.7 217 160-402 23-318 (320)
16 cd01526 RHOD_ThiF Member of th 99.8 2.3E-18 5E-23 151.0 9.4 110 269-399 7-118 (122)
17 cd01525 RHOD_Kc Member of the 99.8 2.7E-18 5.9E-23 145.1 9.5 100 272-393 1-104 (105)
18 cd01444 GlpE_ST GlpE sulfurtra 99.8 2.5E-18 5.3E-23 142.7 9.0 93 271-393 1-95 (96)
19 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 7E-18 1.5E-22 156.3 11.1 110 270-399 36-162 (162)
20 cd01528 RHOD_2 Member of the R 99.7 6.4E-18 1.4E-22 142.8 9.9 97 271-394 1-98 (101)
21 cd01520 RHOD_YbbB Member of th 99.7 1.3E-17 2.7E-22 147.8 11.1 105 272-394 1-126 (128)
22 cd01447 Polysulfide_ST Polysul 99.7 7.5E-18 1.6E-22 141.3 8.7 102 272-396 1-103 (103)
23 cd01535 4RHOD_Repeat_4 Member 99.7 8E-18 1.7E-22 153.2 9.5 98 277-404 2-99 (145)
24 PRK11493 sseA 3-mercaptopyruva 99.7 1.7E-17 3.6E-22 165.5 12.2 119 271-404 6-138 (281)
25 smart00450 RHOD Rhodanese Homo 99.7 1.2E-17 2.6E-22 136.4 8.5 99 284-398 2-100 (100)
26 cd01524 RHOD_Pyr_redox Member 99.7 1.3E-17 2.8E-22 138.3 8.7 89 272-393 1-89 (90)
27 KOG2017 Molybdopterin synthase 99.7 2.4E-18 5.2E-23 174.2 4.9 183 183-395 196-419 (427)
28 PF00581 Rhodanese: Rhodanese- 99.7 3.3E-17 7.3E-22 138.0 11.1 108 273-395 1-113 (113)
29 KOG1530 Rhodanese-related sulf 99.7 1.9E-17 4.1E-22 147.6 9.3 116 267-400 20-135 (136)
30 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.4E-17 5.3E-22 145.3 9.5 99 271-393 3-120 (121)
31 PRK09629 bifunctional thiosulf 99.7 3.1E-17 6.7E-22 179.9 11.5 217 160-402 10-272 (610)
32 PLN02723 3-mercaptopyruvate su 99.7 2.9E-17 6.2E-22 167.1 10.5 119 270-403 22-153 (320)
33 cd01445 TST_Repeats Thiosulfat 99.7 5E-17 1.1E-21 146.8 9.2 108 272-393 1-137 (138)
34 PRK09629 bifunctional thiosulf 99.7 5.2E-17 1.1E-21 178.1 11.0 120 270-404 9-132 (610)
35 COG0607 PspE Rhodanese-related 99.7 6E-17 1.3E-21 136.9 8.9 96 279-402 13-109 (110)
36 cd01522 RHOD_1 Member of the R 99.7 4.1E-17 8.9E-22 142.6 7.8 103 272-394 1-104 (117)
37 cd01529 4RHOD_Repeats Member o 99.7 5.9E-17 1.3E-21 135.7 7.9 87 284-394 10-96 (96)
38 COG2897 SseA Rhodanese-related 99.7 1.2E-16 2.6E-21 160.4 11.2 219 159-402 11-283 (285)
39 PRK05597 molybdopterin biosynt 99.7 1.5E-17 3.3E-22 171.6 4.6 167 189-394 166-354 (355)
40 cd01532 4RHOD_Repeat_1 Member 99.7 1E-16 2.2E-21 134.0 8.3 84 283-394 7-92 (92)
41 cd01531 Acr2p Eukaryotic arsen 99.7 2.5E-16 5.3E-21 136.0 10.0 100 271-395 3-112 (113)
42 PRK08762 molybdopterin biosynt 99.7 3.4E-16 7.4E-21 162.4 12.0 105 270-404 3-107 (376)
43 PRK05600 thiamine biosynthesis 99.6 7.6E-17 1.6E-21 167.4 4.0 168 189-390 182-369 (370)
44 cd00158 RHOD Rhodanese Homolog 99.6 5.3E-16 1.2E-20 125.3 7.2 88 277-393 2-89 (89)
45 PRK01415 hypothetical protein; 99.6 9.4E-16 2E-20 151.3 10.4 102 270-396 112-213 (247)
46 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 8E-16 1.7E-20 133.0 8.5 98 271-393 3-112 (113)
47 COG2897 SseA Rhodanese-related 99.6 2.2E-15 4.7E-20 151.4 12.3 122 271-407 12-144 (285)
48 TIGR02981 phageshock_pspE phag 99.6 2.9E-15 6.3E-20 128.9 8.7 81 285-394 17-97 (101)
49 PRK05320 rhodanese superfamily 99.6 3.1E-15 6.7E-20 148.4 9.9 101 270-394 110-215 (257)
50 PRK00142 putative rhodanese-re 99.6 6.1E-15 1.3E-19 150.2 10.3 100 270-394 112-211 (314)
51 PRK10287 thiosulfate:cyanide s 99.6 5.6E-15 1.2E-19 127.9 7.6 80 286-394 20-99 (104)
52 PRK11784 tRNA 2-selenouridine 99.5 2.3E-14 4.9E-19 147.7 11.6 141 273-447 4-163 (345)
53 cd01446 DSP_MapKP N-terminal r 99.5 1.7E-13 3.7E-18 121.4 10.3 106 271-394 1-126 (132)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 4.8E-13 1E-17 136.2 10.2 107 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.1 1.9E-10 4.2E-15 114.8 9.3 122 271-404 6-139 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.1 2.2E-10 4.7E-15 123.0 7.6 81 275-387 398-482 (482)
57 COG1054 Predicted sulfurtransf 99.0 6.1E-10 1.3E-14 111.9 5.8 99 271-394 114-212 (308)
58 KOG3772 M-phase inducer phosph 98.5 1.3E-07 2.8E-12 96.5 6.7 103 270-395 156-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 98.4 5.5E-07 1.2E-11 90.4 6.4 94 285-394 171-275 (286)
60 COG5105 MIH1 Mitotic inducer, 97.4 0.00023 5E-09 72.8 6.0 98 270-394 242-357 (427)
61 PF05237 MoeZ_MoeB: MoeZ/MoeB 95.6 0.0017 3.8E-08 54.0 -1.4 46 189-237 3-48 (84)
62 COG2603 Predicted ATPase [Gene 94.7 0.046 9.9E-07 55.9 5.2 96 285-394 14-128 (334)
63 TIGR01244 conserved hypothetic 94.6 0.095 2.1E-06 47.3 6.5 111 270-401 13-130 (135)
64 PF04273 DUF442: Putative phos 94.2 0.081 1.8E-06 46.6 5.0 86 270-372 13-104 (110)
65 PRK07688 thiamine/molybdopteri 92.2 0.027 5.9E-07 58.5 -1.3 115 189-307 164-318 (339)
66 KOG1093 Predicted protein kina 88.9 0.15 3.4E-06 56.2 0.8 96 271-392 623-718 (725)
67 KOG1717 Dual specificity phosp 88.5 0.36 7.8E-06 49.0 2.9 101 271-394 5-123 (343)
68 PF13350 Y_phosphatase3: Tyros 86.5 3 6.5E-05 38.4 7.7 31 270-301 28-58 (164)
69 PRK08223 hypothetical protein; 84.0 0.62 1.3E-05 47.7 2.0 52 183-237 160-240 (287)
70 cd00127 DSPc Dual specificity 83.4 3.6 7.8E-05 35.8 6.4 27 353-379 80-109 (139)
71 PRK00142 putative rhodanese-re 72.0 0.94 2E-05 46.8 -0.9 52 268-329 12-63 (314)
72 PLN02727 NAD kinase 67.6 8.8 0.00019 45.2 5.6 92 270-375 267-364 (986)
73 PF01442 Apolipoprotein: Apoli 67.4 3.3 7.2E-05 37.7 1.8 8 169-176 112-119 (202)
74 TIGR03167 tRNA_sel_U_synt tRNA 65.0 13 0.00028 38.5 5.7 33 271-304 137-172 (311)
75 PF03853 YjeF_N: YjeF-related 63.1 30 0.00065 32.2 7.3 78 352-441 23-115 (169)
76 COG0476 ThiF Dinucleotide-util 63.0 6.2 0.00013 38.9 2.9 56 179-237 157-217 (254)
77 COG3453 Uncharacterized protei 62.8 16 0.00035 33.3 5.1 86 269-373 13-106 (130)
78 PF05706 CDKN3: Cyclin-depende 61.5 23 0.00049 33.8 6.2 80 289-378 75-159 (168)
79 KOG3636 Uncharacterized conser 60.9 25 0.00053 38.6 7.0 22 286-307 326-347 (669)
80 smart00195 DSPc Dual specifici 60.5 28 0.0006 30.5 6.4 28 352-379 76-106 (138)
81 PRK05690 molybdopterin biosynt 57.9 5.6 0.00012 39.5 1.6 46 189-237 171-216 (245)
82 PF01451 LMWPc: Low molecular 57.8 8.4 0.00018 34.1 2.6 36 357-392 1-41 (138)
83 PRK12475 thiamine/molybdopteri 57.8 5.2 0.00011 41.7 1.4 46 188-236 163-208 (338)
84 PF05957 DUF883: Bacterial pro 55.9 31 0.00067 29.0 5.6 60 70-129 6-65 (94)
85 TIGR02356 adenyl_thiF thiazole 55.0 8.4 0.00018 37.0 2.2 41 189-232 160-200 (202)
86 PRK08762 molybdopterin biosynt 54.6 6.8 0.00015 41.1 1.6 46 189-237 277-324 (376)
87 TIGR02355 moeB molybdopterin s 53.0 9.6 0.00021 37.8 2.3 46 189-237 163-208 (240)
88 PF09992 DUF2233: Predicted pe 52.5 20 0.00042 33.0 4.2 42 352-393 98-144 (170)
89 PF00782 DSPc: Dual specificit 47.4 80 0.0017 27.2 7.1 29 352-380 71-102 (133)
90 smart00226 LMWPc Low molecular 47.0 20 0.00044 31.8 3.2 36 357-392 1-37 (140)
91 PRK00103 rRNA large subunit me 43.4 33 0.00071 32.2 4.1 45 349-393 62-111 (157)
92 PF02590 SPOUT_MTase: Predicte 42.9 44 0.00095 31.2 4.9 45 348-392 61-110 (155)
93 KOG0781 Signal recognition par 40.5 2.3E+02 0.005 31.7 10.4 146 72-236 271-437 (587)
94 PF06152 Phage_min_cap2: Phage 39.0 1.3E+02 0.0028 31.8 8.3 58 75-132 123-180 (361)
95 PF11127 DUF2892: Protein of u 37.9 31 0.00067 27.1 2.6 27 440-466 33-59 (66)
96 PF05957 DUF883: Bacterial pro 37.1 86 0.0019 26.3 5.4 13 166-178 58-70 (94)
97 PRK12361 hypothetical protein; 36.8 1.3E+02 0.0029 33.1 8.3 18 352-369 173-191 (547)
98 COG2085 Predicted dinucleotide 35.2 1.8E+02 0.0039 28.8 7.9 27 354-380 147-174 (211)
99 TIGR03603 cyclo_dehy_ocin bact 34.3 18 0.00038 37.6 0.9 41 188-231 200-256 (318)
100 PRK10126 tyrosine phosphatase; 33.1 49 0.0011 30.0 3.5 37 355-392 3-40 (147)
101 cd01445 TST_Repeats Thiosulfat 32.9 33 0.00072 30.9 2.3 78 161-247 1-102 (138)
102 COG0062 Uncharacterized conser 32.8 72 0.0016 31.3 4.8 31 354-385 49-82 (203)
103 PLN03050 pyridoxine (pyridoxam 32.6 65 0.0014 32.2 4.6 30 355-385 61-93 (246)
104 TIGR02689 ars_reduc_gluta arse 31.3 74 0.0016 28.0 4.3 34 356-389 2-36 (126)
105 PF09718 Tape_meas_lam_C: Lamb 31.3 1.5E+02 0.0032 24.2 5.7 44 76-119 6-49 (78)
106 KOG0333 U5 snRNP-like RNA heli 30.5 83 0.0018 35.4 5.2 36 353-389 516-551 (673)
107 PTZ00242 protein tyrosine phos 29.9 2.5E+02 0.0053 26.2 7.7 27 352-378 96-124 (166)
108 KOG1386 Nucleoside phosphatase 29.8 40 0.00087 37.2 2.7 14 353-366 84-97 (501)
109 PRK11391 etp phosphotyrosine-p 29.5 63 0.0014 29.4 3.6 37 355-392 3-40 (144)
110 COG2453 CDC14 Predicted protei 28.8 79 0.0017 29.7 4.2 29 352-380 103-134 (180)
111 PRK08328 hypothetical protein; 28.8 28 0.00061 34.1 1.3 43 189-237 166-208 (231)
112 TIGR00197 yjeF_nterm yjeF N-te 27.7 93 0.002 30.0 4.6 33 352-385 43-78 (205)
113 cd02071 MM_CoA_mut_B12_BD meth 26.8 1.3E+02 0.0027 26.4 4.9 45 354-398 50-104 (122)
114 PF07464 ApoLp-III: Apolipopho 26.6 1.6E+02 0.0035 27.7 5.8 45 92-136 31-75 (155)
115 PF07464 ApoLp-III: Apolipopho 26.3 2.9E+02 0.0064 25.9 7.4 51 84-134 27-77 (155)
116 PRK10565 putative carbohydrate 26.0 94 0.002 34.3 4.8 33 352-385 58-93 (508)
117 PLN03094 Substrate binding sub 25.2 1.8E+02 0.0039 31.1 6.5 10 48-57 186-195 (370)
118 PF01601 Corona_S2: Coronaviru 25.1 21 0.00046 40.1 -0.4 45 416-460 521-571 (610)
119 cd00115 LMWPc Substituted upda 24.8 66 0.0014 28.6 2.8 37 356-392 2-40 (141)
120 PRK01565 thiamine biosynthesis 24.5 96 0.0021 33.0 4.4 28 353-380 175-202 (394)
121 PF04343 DUF488: Protein of un 24.1 71 0.0015 28.0 2.8 21 274-294 2-22 (122)
122 PF02302 PTS_IIB: PTS system, 23.9 95 0.0021 25.1 3.4 32 356-388 1-37 (90)
123 TIGR00853 pts-lac PTS system, 23.7 94 0.002 26.5 3.4 38 354-392 3-44 (95)
124 PRK13530 arsenate reductase; P 23.5 1.2E+02 0.0027 27.1 4.3 35 355-389 4-39 (133)
125 cd05565 PTS_IIB_lactose PTS_II 23.3 86 0.0019 27.2 3.1 37 356-393 2-42 (99)
126 PF07755 DUF1611: Protein of u 22.4 3.8E+02 0.0083 27.9 8.1 78 361-444 122-204 (301)
127 PLN03049 pyridoxine (pyridoxam 22.3 1.2E+02 0.0027 33.1 4.8 30 355-385 60-92 (462)
128 PF05802 EspB: Enterobacterial 22.2 5.4E+02 0.012 26.8 8.9 29 177-205 225-254 (317)
129 TIGR00342 thiazole biosynthesi 22.1 1.3E+02 0.0027 31.8 4.7 28 353-380 171-198 (371)
130 COG2519 GCD14 tRNA(1-methylade 20.1 1.2E+02 0.0026 30.9 3.8 32 352-383 186-217 (256)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=3.9e-20 Score=158.59 Aligned_cols=99 Identities=25% Similarity=0.200 Sum_probs=84.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
..|+++++.++++++++.+|||||++.||..+|||||+ |+|+.++...... ++.
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~--------------l~~---- 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGE--------------LAP---- 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHh--------------cCC----
Confidence 47999999999865556899999999999999999999 9998665443222 111
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCC-EEEecchHHHHHHcC
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~n-V~vLdGG~~aW~~aG 396 (468)
+++++||+||++|.||..+++.|+..||++ |++|+||+.+|..+|
T Consensus 64 --~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 --DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred --CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 567899999999999999999999999987 999999999999876
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=7.4e-20 Score=154.60 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
.|+++++.+++. +++.+|||||++.||+.+|||||+ |+|+.++...... +.+. ..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~~---------~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDEN---------LD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHhh---------hh
Confidence 589999999984 567899999999999999999999 9998766432111 1110 01
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|..
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 26889999999999999999999999999999999999999963
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.80 E-value=2.5e-19 Score=150.47 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
.|+++|+.+++++ +.+|||+|+++||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 6899999999854 3899999999999999999999 888766543211 0
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCc
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv 399 (468)
++++++||+||++|.||..+++.|+++||+++++|+||+.+|+.+|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2678899999999999999999999999999999999999999999875
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.80 E-value=2.3e-19 Score=153.51 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=88.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
..++++++.++++ +++.++||+|++.||..+|||||+ |+|+..+...+..
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~--------------------- 54 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQ--------------------- 54 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHh---------------------
Confidence 4699999999984 456899999999999999999999 8887554432221
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccc
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~ 402 (468)
++++++|++||.+|.+|..++..|++.||+++++|+||+.+|++.++|+++.
T Consensus 55 -~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 55 -ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred -cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 2678899999999999999999999999999999999999999999998763
No 5
>PLN02160 thiosulfate sulfurtransferase
Probab=99.79 E-value=5.2e-19 Score=159.30 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=88.2
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC--cccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA--~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~ 347 (468)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. . ..+.+++++....
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~-~~l~~~~~~~~~~------- 75 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-Q-GRVKNQEFLEQVS------- 75 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-c-cccCCHHHHHHHH-------
Confidence 47999999999853 468999999999999999999 6 777633311 0 1111122221111
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCccccc
Q 012218 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~ 403 (468)
..++++++||+||++|.||..++..|.+.||++|++|.|||.+|.++|+|+++..
T Consensus 76 -~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 76 -SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred -hccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 1136788999999999999999999999999999999999999999999998763
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=4.4e-19 Score=149.41 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=80.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l 351 (468)
|+++++.++++++++++|||||++.||+.+|||||+ |+|+.++....... ..+. +..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~~--------~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EEDI--------LDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHHH--------HhhC
Confidence 689999999976667899999999999999999999 89986654322000 0000 1123
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
+++++||+||++|.||..++..|++.||+ +++|+||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 78899999999999999999999999998 999999999996
No 7
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=4.5e-19 Score=148.44 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=77.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 272 ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
|+++|+.++++++ ++++|||||++.||..+|||||+ |+|+.++......+ .
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~-------~------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHF-------A------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHh-------c-------------
Confidence 6889999998654 36789999999999999999999 99876554322211 0
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
..++++||+||++|.||..++..|+.+||+ |++|+||+.+|..
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 035788999999999999999999999998 9999999999963
No 8
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.78 E-value=6e-19 Score=153.46 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.8
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhHhhcCCCCCcccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~-------~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~---l~~ll~~~~~L~~~l~ 341 (468)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++++++.+.++
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999985 467899999999 999999999999 8887665432 2345667777777776
Q ss_pred HHHHhhhcccCCCceEEEEeCC-CchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 012218 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (468)
Q Consensus 342 alGI~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aG 396 (468)
..++ +++++||+||++ |.++..+++.|+.+||++|++|+||+.+|.++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6665 789999999999 589999999999999999999999999999865
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.78 E-value=4.2e-19 Score=150.13 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=84.5
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 012218 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (468)
Q Consensus 273 Sp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~ 352 (468)
+++++.++++.+++.+|||+|++.||..||||||+ |+|+.++.+. ..++++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888742567999999999999999999999 8888765432 12233445554444344 6
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 10
>PRK07411 hypothetical protein; Validated
Probab=99.77 E-value=7.8e-19 Score=183.20 Aligned_cols=182 Identities=20% Similarity=0.202 Sum_probs=126.5
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCCC--CCcchHHHHHhhh-----------
Q 012218 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGTS----------- 253 (468)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~~--~PvL~~~~~vg~~----------- 253 (468)
||||+|++|+.++ .+.+|.+.+ |++|..+.++ ..++.|.++-++|+... .-++.+-.+-...
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999987533 556899999 9999999999 88999999999875321 1122110000000
Q ss_pred -H-HHHHHHHHHHh-----------CCCCcccCHHHHHHHHhCCC-CcEEEEcCChhhHhhcCCCCCcccccccccccCc
Q 012218 254 -A-TLWIFYWWWTY-----------GGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (468)
Q Consensus 254 -a-al~l~~~l~~~-----------~~y~~~ISp~el~elL~~~~-~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl 319 (468)
+ .-...|-.+.. +.....|+++|+.++++.++ +.+|||||++.||+.+|||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 0 00000001100 11124699999999986443 5799999999999999999999 8998
Q ss_pred ccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCc
Q 012218 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (468)
Q Consensus 320 ~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv 399 (468)
.++..... .+.+ ..++++++||+||++|.||..+++.|+++||++ +.|+||+.+|+++..|.
T Consensus 325 ~~l~~~~~-----~~~l------------~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEKV------------KELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHHH------------hhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 66543110 0011 113678999999999999999999999999974 68999999999876654
No 11
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.77 E-value=5.3e-19 Score=184.48 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=128.7
Q ss_pred eccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchHHHHHhhhH---------
Q 012218 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSA--------- 254 (468)
Q Consensus 188 ~G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~--~~PvL~~~~~vg~~a--------- 254 (468)
+|+|++|++|+..+ .+.+|.+.| +++|+.+.++ ..++.|.++-++|+.. ...++.+ ......-
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~-d~~~~~~~~~~~~~~~ 258 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVY-DALEMTYRTIKIRKDP 258 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEE-ECCCCceeeEeeccCC
Confidence 58999999986433 567899888 9999999999 8899999999987522 1122211 0000000
Q ss_pred ---HHH--HHHHHHHh--------CCCCcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCccc
Q 012218 255 ---TLW--IFYWWWTY--------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPE 321 (468)
Q Consensus 255 ---al~--l~~~l~~~--------~~y~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~e 321 (468)
.+. ..|-.+.. ......|+++|+.++++++++.+|||+|+++||+.+|||||+ |+|+.+
T Consensus 259 ~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~ 330 (392)
T PRK07878 259 STPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSE 330 (392)
T ss_pred CCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHH
Confidence 000 00000000 011136899999999865556899999999999999999999 898866
Q ss_pred ccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCC
Q 012218 322 VGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (468)
Q Consensus 322 l~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLP 398 (468)
+.... .+ ..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 331 l~~~~--------~~------------~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 331 ILSGE--------AL------------AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hcchh--------HH------------hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 54210 01 11378899999999999999999999999999999999999999987654
No 12
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.77 E-value=8.9e-19 Score=151.09 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=89.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh-----------cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHH
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey~~-----------gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l 340 (468)
++++++.++++ +++.+|||+|++.||.. ||||||+ |+|+..+.... ..+++++++.+.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 45689999999999987 9999999 88876554322 2456667777777
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 341 ~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
..+++ +++++||+||++|.||..+++.|+.+||+++++|+||+.+|.
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 77666 788999999999999999999999999999999999999996
No 13
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=2.2e-18 Score=148.37 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=84.7
Q ss_pred CcccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 012218 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (468)
Q Consensus 269 ~~~ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~ 347 (468)
...++++++.++++++ ++.+|||+|++.||..+|||||+ ++|...+.... +
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~---------~----------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENA---------T----------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHh---------h-----------
Confidence 4579999999999754 56899999999999999999999 88875543211 0
Q ss_pred hcccCCCceEEEEeCCCc--hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCc
Q 012218 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~--RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv 399 (468)
..++++++||+||++|. +|..+++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 11378899999999874 899999999999994 999999999999999985
No 14
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.76 E-value=6.9e-19 Score=175.38 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=143.2
Q ss_pred chhHHHHHHHHHHhhhhcccCcc----------eEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHH
Q 012218 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (468)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie 229 (468)
-|+.++|++.+..-+-.+.|.|+ .-.|.-||++..+.-+...... . ..|+..... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~----~----~~~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSD----H----TSPLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcC----C----CCCCCCCCC-CHHHHH
Confidence 36789999998655556899986 3467789999877655443210 0 011111111 112233
Q ss_pred HHHHhcCCCCCCCcchHHHHHhhhHHH--HHHHHH--------------HHhCCCC---c-----------------ccC
Q 012218 230 GLERSLGFDPNDPIVPFVVFLGTSATL--WIFYWW--------------WTYGGYS---G-----------------DLS 273 (468)
Q Consensus 230 ~le~~lgf~~~~PvL~~~~~vg~~aal--~l~~~l--------------~~~~~y~---~-----------------~IS 273 (468)
.+-+.+|+..++||+++.---+..++. +++..+ |...++. . ..+
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 156 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVR 156 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceec
Confidence 444457888899998764321111111 111111 2222221 0 112
Q ss_pred HHHHHHHHhCCCCcEEEEcCChhhHh-----------hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHH
Q 012218 274 PKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (468)
Q Consensus 274 p~el~elL~~~~~avLIDVRs~~Ey~-----------~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~a 342 (468)
.+++...+ ++++.+|||+|+++||. .||||||+ |+|..++... ..+++++++++.+.+
T Consensus 157 ~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~~~ 225 (281)
T PRK11493 157 LTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIFFG 225 (281)
T ss_pred HHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHHHh
Confidence 23333344 34568999999999995 69999999 8887665432 235667778888887
Q ss_pred HHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCcccc
Q 012218 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (468)
Q Consensus 343 lGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~-aGLPv~~~ 402 (468)
.|+ +++++||+||++|.||..++..|+.+||++|++|+|||.+|.. +++|++++
T Consensus 226 ~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 226 RGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred cCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 787 7889999999999999999999999999999999999999998 79998765
No 15
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.76 E-value=1.2e-18 Score=177.30 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHHhhhhcccCc---------ceEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHH
Q 012218 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (468)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~ 230 (468)
-|+.|||++.+..-+-.|.|.| +...|.-||++..+.-++.+...... ..-.++.. .+.++.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~----~~~~~lp~-----~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTT----DLPHMLPS-----EEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCC----CcCCCCCC-----HHHHHH
Confidence 5778999998855444567764 12467889999998876654322111 11111111 223334
Q ss_pred HHHhcCCCCCCCcchHHHHHhhhHHHHHHHHH-----------------HHhCCCC--c---------------------
Q 012218 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWW-----------------WTYGGYS--G--------------------- 270 (468)
Q Consensus 231 le~~lgf~~~~PvL~~~~~vg~~aal~l~~~l-----------------~~~~~y~--~--------------------- 270 (468)
+-+.+|+.+++||+++...-+..++. +++.+ |...++. .
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~g~~~a~r-~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~ 172 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGKGIFSAAR-VWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKVY 172 (320)
T ss_pred HHHHcCCCCCCEEEEEcCCCcchHHH-HHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccccccccccc
Confidence 44557998999998764221112211 11111 3222210 0
Q ss_pred ------------------ccCHHHHHHHHhCCCCcEEEEcCChhhH-----------hhcCCCCCcccccccccccCccc
Q 012218 271 ------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPE 321 (468)
Q Consensus 271 ------------------~ISp~el~elL~~~~~avLIDVRs~~Ey-----------~~gHIPGA~~a~~~~~~nIPl~e 321 (468)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~~ 243 (320)
T PLN02723 173 QGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFPQ 243 (320)
T ss_pred ccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHHH
Confidence 145677777773 457889999999988 579999999 888765
Q ss_pred ccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHc-CCCcc
Q 012218 322 VGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIK 400 (468)
Q Consensus 322 l~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~a-GLPv~ 400 (468)
+.+.- ..+++++++++.+.++|+ +++++||+||++|.||..+++.|+.+||++|++|+|||.+|... ++|++
T Consensus 244 ~~~~~-~~~~~~~el~~~~~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~ 316 (320)
T PLN02723 244 MLDSS-QTLLPAEELKKRFEQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVA 316 (320)
T ss_pred hcCCC-CCCCCHHHHHHHHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCcc
Confidence 54322 346778888888888888 78999999999999999999999999999999999999999874 67876
Q ss_pred cc
Q 012218 401 EL 402 (468)
Q Consensus 401 ~~ 402 (468)
++
T Consensus 317 ~~ 318 (320)
T PLN02723 317 TS 318 (320)
T ss_pred CC
Confidence 53
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.76 E-value=2.3e-18 Score=150.99 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=88.5
Q ss_pred CcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHH-HHHHHHHhh
Q 012218 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDD-TLTAAVIRN 347 (468)
Q Consensus 269 ~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~-~l~alGI~~ 347 (468)
...|+++++.++++++++++|||+|++.||..+|||||+ |+|+.++......+ .. .+...+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~-------~~~~~~~~~--- 68 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAEL-------KSLQELPLD--- 68 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhh-------hhhhhcccc---
Confidence 357999999999865467899999999999999999999 99987765433221 10 011112
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccC-CCEEEecchHHHHHHcCCCc
Q 012218 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf-~nV~vLdGG~~aW~~aGLPv 399 (468)
++++++||+||++|.||..+++.|+..|| ++++.|+||+.+|.....|.
T Consensus 69 ---~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 ---NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred ---cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 27889999999999999999999999999 79999999999999865543
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.76 E-value=2.7e-18 Score=145.14 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccc---hhhhhhcCchhhHHHHHHHHHhh
Q 012218 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (468)
Q Consensus 272 ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~ll~~~~~L~~~l~alGI~~ 347 (468)
|+++++.++++++ ++++|||||++.||..||||||+ |+|+..+.. .... ++....+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~~--------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLEN--------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHHh---------
Confidence 6899999999643 36899999999999999999999 888755421 1111 111111111
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
.++++||+||.+|.+|..+++.|+..||++|++|+||+.+|+
T Consensus 63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 357899999999999999999999999999999999999996
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.76 E-value=2.5e-18 Score=142.70 Aligned_cols=93 Identities=27% Similarity=0.372 Sum_probs=80.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhh--cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~--gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~L 348 (468)
.|+++++.+++++++++++||+|++.||.. +|||||+ |+|+.++.....
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~--------------------- 51 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG--------------------- 51 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh---------------------
Confidence 378999999986546799999999999999 9999999 888865543221
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
.++++++||+||++|.+|..+++.|++.||++|++|+||+.+|+
T Consensus 52 -~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 -DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred -hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 13788999999999999999999999999999999999999996
No 19
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.75 E-value=7e-18 Score=156.33 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChh----hHhhc---------CCCCCcccccccccccCc---ccccchhhhhhcCc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 333 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~----Ey~~g---------HIPGA~~a~~~~~~nIPl---~el~~~l~~ll~~~ 333 (468)
..|+++|+.+++. +++.+|||||++. ||.+| |||||+ |+|. .++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4799999999995 5678999999876 46544 999998 6653 3332211 0
Q ss_pred hhhHHHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCc
Q 012218 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (468)
Q Consensus 334 ~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv 399 (468)
..+.+.+.++++ .+++++||+||++|. +|..+++.|+++||++|++|+|||.+|+++|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112232333222 268899999999997 8999999999999999999999999999999985
No 20
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.74 E-value=6.4e-18 Score=142.77 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 271 ~ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
.|+++++.+++..+ ++.++||+|++.||..+|||||+ |+|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 37899999999653 36899999999999999999999 89986654332211 1
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
..+++++||+||++|.||..++..|.+.||+++++|+||+.+|..
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 114588999999999999999999999999999999999999975
No 21
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.74 E-value=1.3e-17 Score=147.82 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchh-----------------hhhhcCch
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 334 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l-----------------~~ll~~~~ 334 (468)
|+++++.++++ ++.+|||||++.||..||||||+ |+|+..+.... +..++. .
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVS-G 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHh-h
Confidence 68999999985 46899999999999999999999 88875432110 000111 1
Q ss_pred hhHHHHHH---HHHhhhcccCCCceEEEEeC-CCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 335 ELDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 335 ~L~~~l~a---lGI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.+++.+.. .++ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 23333332 244 88999999997 68899999999999999 69999999999975
No 22
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.73 E-value=7.5e-18 Score=141.29 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhH-hhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey-~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
|+++++.++++ +++.+|||+|++.|| ..||||||+ |+|+..+...... +.. +.. ..
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~---~~~-----~~~------~~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP---DSP-----YHK------PA 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc---ccc-----ccc------cC
Confidence 67899999884 467899999999998 579999998 8887554322110 000 000 01
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aG 396 (468)
++++++||+||.+|.||..+++.|+..||++|+.|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3788999999999999999999999999999999999999998765
No 23
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=8e-18 Score=153.24 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=81.4
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCce
Q 012218 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (468)
Q Consensus 277 l~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~ 356 (468)
+.+++.++.+++|||||++.+|+.+|||||+ ++|...+...+.. ++++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~----------------------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEK----------------------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHh----------------------cCCCCC
Confidence 4556655566899999999999999999998 7776544332211 256789
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccccc
Q 012218 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (468)
Q Consensus 357 IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~ 404 (468)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++...+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987533
No 24
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.73 E-value=1.7e-17 Score=165.51 Aligned_cols=119 Identities=14% Similarity=0.238 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC----------hhhHhhcCCCCCcccccccccccCcccccc---hhhhhhcCchhhH
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs----------~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~ll~~~~~L~ 337 (468)
-++++++.+++ ++++++|||+|+ +.+|..||||||+ |+|+..+.. ..+.++++++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48999999998 467899999997 7899999999998 666544322 2234566778889
Q ss_pred HHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccccc
Q 012218 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (468)
Q Consensus 338 ~~l~alGI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~ 404 (468)
+.++.+|+ +++++||+||.+|. .+.++++.|+..||++|++|+||+.+|.++|+|+++..+
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 99999998 88999999999877 466788999999999999999999999999999987643
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.73 E-value=1.2e-17 Score=136.35 Aligned_cols=99 Identities=29% Similarity=0.438 Sum_probs=76.3
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCC
Q 012218 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (468)
Q Consensus 284 ~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~s 363 (468)
+++.+|||+|++.||..+|||||+ |+|...+...... .+.. .+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~-~~~~-~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGE-LDIL-EFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCC-cCHH-HHHHHHHHcC------CCCCCeEEEEeCC
Confidence 457899999999999999999998 8887655432111 0000 1222222222 3788999999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecchHHHHHHcCCC
Q 012218 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (468)
Q Consensus 364 G~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLP 398 (468)
|.++..+++.|+..||++|++|+||+.+|+..|.|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 26
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.72 E-value=1.3e-17 Score=138.27 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l 351 (468)
++|+++.+++ .++.++||+|++++|..+|||||+ |+|..++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 5789999988 356789999999999999999999 888765543221 13
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
+++++||+||.+|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 6788999999999999999999999999 9999999999996
No 27
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.72 E-value=2.4e-18 Score=174.18 Aligned_cols=183 Identities=22% Similarity=0.271 Sum_probs=138.4
Q ss_pred eEEEee--ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCC-CCCCcchHHHHHhhhHHHH
Q 012218 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLW 257 (468)
Q Consensus 183 ~~~~~~--G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~-~~~PvL~~~~~vg~~aal~ 257 (468)
-+||-| ||||||++|++++ ++.+|+|.| |++|+.|.++ .++++|.++-+.+.- +-.|.|. +|-|..+ -+
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~-~~ 269 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSG-HF 269 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccc-ee
Confidence 456666 8999999999999 999999999 9999999999 999999999998754 2245543 3444443 22
Q ss_pred HHHHHHHhC----------------------C---C----------CcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcC
Q 012218 258 IFYWWWTYG----------------------G---Y----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG 302 (468)
Q Consensus 258 l~~~l~~~~----------------------~---y----------~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gH 302 (468)
..+.+..++ + + ..+|+..|+++++++.+..++||||++.||+-.|
T Consensus 270 r~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~ 349 (427)
T KOG2017|consen 270 RTIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICR 349 (427)
T ss_pred EEEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEe
Confidence 211111000 0 0 1368888999999877889999999999999999
Q ss_pred CCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCC-C
Q 012218 303 IPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-R 381 (468)
Q Consensus 303 IPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~-n 381 (468)
+|+|+ |||+.++.....+. +...+ -....+|+|+|+.|+.|+.+++.|+...+. +
T Consensus 350 lP~av--------NIPL~~l~~~~~~~------~~~~~----------~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~ 405 (427)
T KOG2017|consen 350 LPEAV--------NIPLKELRSRSGKK------LQGDL----------NTESKDIFVICRRGNDSQRAVRILREKFPDSS 405 (427)
T ss_pred ccccc--------ccchhhhhhhhhhh------hcccc----------cccCCCEEEEeCCCCchHHHHHHHHhhCCchh
Confidence 99999 99998887654421 11000 134567999999999999999999987654 6
Q ss_pred EEEecchHHHHHHc
Q 012218 382 AFLVQGGFQSWVKE 395 (468)
Q Consensus 382 V~vLdGG~~aW~~a 395 (468)
|+-+.||+.+|...
T Consensus 406 vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 406 VRDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhhHHHHHHHh
Confidence 77889999999874
No 28
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.72 E-value=3.3e-17 Score=137.98 Aligned_cols=108 Identities=30% Similarity=0.508 Sum_probs=79.3
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 012218 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (468)
Q Consensus 273 Sp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~ 352 (468)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|...+... ........+...+...+ ...+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELG----KKID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHT----HGST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--ccccccccccccccccc----cccc
Confidence 689999999 6789999999999999999999998 7776443100 00000111222222222 2347
Q ss_pred CCceEEEEeCCCchHHHHHHH-----HHHccCCCEEEecchHHHHHHc
Q 012218 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (468)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~-----L~~~Gf~nV~vLdGG~~aW~~a 395 (468)
++++||+||..|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 788999999999988887776 8999999999999999999874
No 29
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.9e-17 Score=147.65 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=93.2
Q ss_pred CCCcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHh
Q 012218 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (468)
Q Consensus 267 ~y~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~ 346 (468)
+....++.++++++++ .++.++||||+|+||.+||+|.++ |||+-..... ..+++++++++ .|.
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~- 83 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGS- 83 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hcc-
Confidence 3445789999999984 566999999999999999999999 8998433322 23455665543 222
Q ss_pred hhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcc
Q 012218 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (468)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~ 400 (468)
.+ .+.|++|||+|++|.||..|...|..+||++|.++.|||.+|.+.++|..
T Consensus 84 -~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 -SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred -cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 22 25677999999999999999999999999999999999999999998764
No 30
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=2.4e-17 Score=145.34 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.4
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcc-cccchhhhhhcCchhhHHHHHHHH
Q 012218 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (468)
Q Consensus 271 ~ISp~el~elL~~~-----~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~-el~~~l~~ll~~~~~L~~~l~alG 344 (468)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|.. .+....... ...++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~----------~~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDK----------PGVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHh----------hcccc
Confidence 59999999999653 46899999999999999999999 88875 343321110 00011
Q ss_pred HhhhcccCCCceEEEEeC-CCchHHHHHHHHHHc------------cCCCEEEecchHHHHH
Q 012218 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (468)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~~------------Gf~nV~vLdGG~~aW~ 393 (468)
++++++||+||+ +|.||..+++.|++. ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 278999999997 999999999999985 9999999999999984
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.71 E-value=3.1e-17 Score=179.89 Aligned_cols=217 Identities=16% Similarity=0.100 Sum_probs=151.1
Q ss_pred chhHHHHHHHHHHhhhhcccCcceEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC
Q 012218 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (468)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~ 239 (468)
-++.++|++.+..-+-.+.|.|+.--|.=||++..+.-+......... ..-+++... + .++.+-+.+|+.+
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~----~~~~~lp~~-~----~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP----PAPGLLPDT-A----DLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC----CCCCCCCCH-H----HHHHHHHHcCCCC
Confidence 478899999996655678999998888899999888766543221100 011122211 1 2233334478899
Q ss_pred CCCcchHHHHHhhhHHHHHHHHH-----------------HHhCCCC--------------------cccCHHHHHHHHh
Q 012218 240 NDPIVPFVVFLGTSATLWIFYWW-----------------WTYGGYS--------------------GDLSPKSTLELLR 282 (468)
Q Consensus 240 ~~PvL~~~~~vg~~aal~l~~~l-----------------~~~~~y~--------------------~~ISp~el~elL~ 282 (468)
++||+++.---+..++ .++|.+ |...++. ..++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~A~-R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l- 158 (610)
T PRK09629 81 DAVYVVYDDEGGGWAG-RFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL- 158 (610)
T ss_pred CCEEEEECCCCCchHH-HHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh-
Confidence 9999876332111222 222222 3222210 135677888887
Q ss_pred CCCCcEEEEcCChhhHh--------hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCC
Q 012218 283 GKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDR 354 (468)
Q Consensus 283 ~~~~avLIDVRs~~Ey~--------~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd 354 (468)
++++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++.+..+|+ +++
T Consensus 159 ~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi------~~~ 223 (610)
T PRK09629 159 GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGI------TPD 223 (610)
T ss_pred CCCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCC------CCC
Confidence 35678999999999994 79999999 88875432221 235677788888888888 789
Q ss_pred ceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCcccc
Q 012218 355 SKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (468)
Q Consensus 355 ~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~-aGLPv~~~ 402 (468)
++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|+++.
T Consensus 224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 9999999999999999999999999999999999999987 57898764
No 32
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=2.9e-17 Score=167.12 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=99.6
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcC--------C-hhhHhhcCCCCCcccccccccccCcccccc---hhhhhhcCchhhH
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVR--------s-~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~ll~~~~~L~ 337 (468)
..|+++++.++++ +++.+|||+| + .++|.+||||||+ ++|+..+.. ....++++++.++
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3699999999994 5789999996 3 3789999999998 666544433 2345677788899
Q ss_pred HHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCccccc
Q 012218 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (468)
Q Consensus 338 ~~l~alGI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~ 403 (468)
+.+.++|| +++++|||||..|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++..
T Consensus 93 ~~l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 93 AAVSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999999 78899999999886 45788899999999999999999999999999998753
No 33
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.70 E-value=5e-17 Score=146.79 Aligned_cols=108 Identities=23% Similarity=0.255 Sum_probs=89.9
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhHhh------------cCCCCCcccccccccccCccccc---ch
Q 012218 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVG---GS 325 (468)
Q Consensus 272 ISp~el~elL~~---~~~avLIDVRs~--------~Ey~~------------gHIPGA~~a~~~~~~nIPl~el~---~~ 325 (468)
++++++.+.+++ +++.+|||+|+. ++|.. ||||||+ ++|+..+. ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999853 467999999987 89988 9999998 66654332 22
Q ss_pred hhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCC---CchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 326 l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~s---G~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
...++++++.+++.+.++|| +++++||+||.+ |.++.++++.|+.+|+++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 23456667789999999999 789999999986 778999999999999999999999999996
No 34
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.69 E-value=5.2e-17 Score=178.10 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=101.3
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCccccc---chhhhhhcCchhhHHHHHHHHHh
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~---~~l~~ll~~~~~L~~~l~alGI~ 346 (468)
..|+++++.++++ +++++|||+|++++|..||||||+ ++|+.... .....++++++.+++.+.++||
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI- 78 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH- 78 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 3599999999994 567999999999999999999998 66543211 1123466777889999999998
Q ss_pred hhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccccc
Q 012218 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (468)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~ 404 (468)
+++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|..+|+|+++..+
T Consensus 79 -----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 79 -----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred -----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 88999999999874 888999999999999999999999999999999987643
No 35
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=6e-17 Score=136.86 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=81.4
Q ss_pred HHHhCCCCcEEEEcCChhhHhhcCCCC-CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceE
Q 012218 279 ELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (468)
Q Consensus 279 elL~~~~~avLIDVRs~~Ey~~gHIPG-A~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~I 357 (468)
..+...++.+|||||++.||+.+|||+ +. |+|+.++........ .+++++|
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~i 64 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPI 64 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeE
Confidence 333355689999999999999999999 88 899887765432210 1679999
Q ss_pred EEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccc
Q 012218 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (468)
Q Consensus 358 VVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~ 402 (468)
|+||++|.||..++..|+.+||++++++.||+.+|...++|+...
T Consensus 65 vv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 65 VVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 999999999999999999999998899999999999999998753
No 36
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.69 E-value=4.1e-17 Score=142.56 Aligned_cols=103 Identities=25% Similarity=0.325 Sum_probs=81.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh-hcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 272 ISp~el~elL~~~~~avLIDVRs~~Ey~-~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
|+++++.++++++++.++||||++.||+ .+|||||+ |+|..++.... ++.. +...+.. .
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~-~~~~l~~-------~ 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPN-FLAELEE-------K 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHH-HHHHHHh-------h
Confidence 6899999999755689999999999999 99999998 88876554211 1111 1111111 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.+++++||+||++|.||..+++.|+++||++++.+.|||.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 25788999999999999999999999999999999999999975
No 37
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.69 E-value=5.9e-17 Score=135.70 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCC
Q 012218 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (468)
Q Consensus 284 ~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~s 363 (468)
+++.+|||+|++.||..+|||||+ |+|+.++..... .++ .++ ..+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~-------~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQ-------ELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHH-------HHH----Hhh-----cCCCCCCEEEEeCC
Confidence 467899999999999999999999 888755432211 111 111 13678899999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 364 G~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
|.+|..+++.|++.||++|++|+||+.+|.+
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 38
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.2e-16 Score=160.38 Aligned_cols=219 Identities=18% Similarity=0.171 Sum_probs=154.1
Q ss_pred cchhHHHHHHHHH-----HhhhhcccCcc--eEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHH
Q 012218 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (468)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l 231 (468)
--|+.|||.+.+. .++-++..... -..|.-||++..++-+....++-... .-.++... +|..+ +
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----~~~~lp~~-e~fa~----~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----LPHMLPSP-EQFAK----L 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----CCCCCCCH-HHHHH----H
Confidence 3578999999976 33444333333 47788899999999988876633221 12222222 22333 4
Q ss_pred HHhcCCCCCCCcchHHHHHhhhHHHHHHHHH----------------HHhCCC------------------C--cccCHH
Q 012218 232 ERSLGFDPNDPIVPFVVFLGTSATLWIFYWW----------------WTYGGY------------------S--GDLSPK 275 (468)
Q Consensus 232 e~~lgf~~~~PvL~~~~~vg~~aal~l~~~l----------------~~~~~y------------------~--~~ISp~ 275 (468)
-..+|+..+++|+++...-+..++...+.+. |...++ . ...+..
T Consensus 82 ~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~ 161 (285)
T COG2897 82 LGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDAT 161 (285)
T ss_pred HHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHH
Confidence 4558999999999886544444433222222 222111 0 124445
Q ss_pred HHHHHHhCCCCcEEEEcCChhhHhh----------cCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 012218 276 STLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (468)
Q Consensus 276 el~elL~~~~~avLIDVRs~~Ey~~----------gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI 345 (468)
+....+ +....+|||+|++++|.. ||||||+ |+|...+.+ -...++.++.++.+++..||
T Consensus 162 ~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~~~gi 231 (285)
T COG2897 162 LVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYADAGI 231 (285)
T ss_pred HHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHHhcCC
Confidence 566665 456788999999999988 9999999 999877766 34566777777777778888
Q ss_pred hhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCcccc
Q 012218 346 RNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (468)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~-aGLPv~~~ 402 (468)
+++++||+||++|.||+.....|+.+|+.++++|+|++..|.+ .+.|++++
T Consensus 232 ------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 232 ------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred ------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 8999999999999999999999999999988999999999997 45577765
No 39
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.68 E-value=1.5e-17 Score=171.57 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=119.1
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchHHHHHhhhHHHHHHHHHHH
Q 012218 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (468)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~--~~PvL~~~~~vg~~aal~l~~~l~~ 264 (468)
|||++|++|+.++ .+..|.+.+ |++|..+..+ ..++.|.++-++|+.. .+-++.+ .+ ...-+-.+- ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~~-d~---~~~~~~~~~-~~ 237 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGYY-DS---LDGTWEYIP-VV 237 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEEE-EC---CCCeEEEEe-cc
Confidence 5899999997643 456788888 9999999999 8889999999987631 1222221 00 000000000 00
Q ss_pred hC------------------CCCcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchh
Q 012218 265 YG------------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 326 (468)
Q Consensus 265 ~~------------------~y~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l 326 (468)
++ +....++++++.++. ++.+|||+|+++||+.+|||||+ |+|+.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~ 306 (355)
T PRK05597 238 GNPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGA 306 (355)
T ss_pred CCCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcc
Confidence 00 111246677777543 46799999999999999999999 99986654321
Q ss_pred hhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 327 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 327 ~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.. . .++++++||+||++|.||..+++.|++.||++|++|+||+.+|.+
T Consensus 307 ~~--------------~------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 NP--------------P------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred cc--------------c------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 10 0 126788999999999999999999999999999999999999976
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=1e-16 Score=133.96 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeC
Q 012218 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (468)
Q Consensus 283 ~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~ 362 (468)
++++++|||+|++.||..+|||||+ |+|+..+...... .. .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999999 8887654321100 00 135889999999
Q ss_pred CCch--HHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 363 sG~R--S~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
+|.+ |..+++.|++.||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999973
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.67 E-value=2.5e-16 Score=136.05 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 271 ~ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
.|+++++.+++.++ ++.++||||++ ||..+|||||+ ++|+..+.....++ .+..++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc----
Confidence 58999999998654 56789999999 99999999999 89987665433221 111222
Q ss_pred ccCCCceEEEEeC-CCchHHHHHHHHHH--------ccCCCEEEecchHHHHHHc
Q 012218 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (468)
Q Consensus 350 ~l~kd~~IVVyC~-sG~RS~~AA~~L~~--------~Gf~nV~vLdGG~~aW~~a 395 (468)
+++++||+||. +|.|+..+++.|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 56789999998 67899988887754 4999999999999999873
No 42
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.66 E-value=3.4e-16 Score=162.36 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=89.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
..|+++++.+++++ +.++||+|+++||..+|||||+ |+|+..+.....+ ..
T Consensus 3 ~~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~--------------~~----- 53 (376)
T PRK08762 3 REISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIET--------------HL----- 53 (376)
T ss_pred ceeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhh--------------hc-----
Confidence 36899999999853 5899999999999999999999 8987655432221 11
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccccc
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~ 404 (468)
.+++++||+||++|.||..+++.|++.||++|++|+||+.+|++.|+|++....
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 167899999999999999999999999999999999999999999999987644
No 43
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.64 E-value=7.6e-17 Score=167.37 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=117.3
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchHHHHHhhhHHHHHHHHHHH
Q 012218 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (468)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~--~~PvL~~~~~vg~~aal~l~~~l~~ 264 (468)
++|++|++|+..+ .+.+|.+.+ +++|..+..+ ..++.|.++-++|+.+ .+.++.+- ....-+.. +-+.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~~d----~~~~~~~~-~~~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLSYD----ALTATTRS-FRVG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEE----CCCCEEEE-EEec
Confidence 5799999997543 445787777 9999999999 8889999999988622 23333211 00000000 0011
Q ss_pred hC-----------CC-CcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCC---CCcccccccccccCcccccchhhhh
Q 012218 265 YG-----------GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKL 329 (468)
Q Consensus 265 ~~-----------~y-~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIP---GA~~a~~~~~~nIPl~el~~~l~~l 329 (468)
++ .| ...++++|+.+++. +++++|||||+++||+.+||| ||+ |+|+.++......
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~-~~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~- 323 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATL-NGSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADI- 323 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHh-cCCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhh-
Confidence 11 11 12588999999985 456799999999999999999 577 8998777532100
Q ss_pred hcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCC-EEEecchHH
Q 012218 330 LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (468)
Q Consensus 330 l~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~n-V~vLdGG~~ 390 (468)
.. .+..++++ +|||||++|.||..+++.|+++||++ |++|+||+.
T Consensus 324 ------~~---------~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 324 ------LH---------ALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ------hh---------hccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 00 01112444 89999999999999999999999986 999999985
No 44
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.63 E-value=5.3e-16 Score=125.30 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=72.4
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCce
Q 012218 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (468)
Q Consensus 277 l~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~ 356 (468)
+.+++. +++..+||+|++.||..+|||||. ++|...+.... ...+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhhc------cCCCCe
Confidence 345553 568999999999999999999998 88875543321 0111 278899
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 357 IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
||+||..|.++..+++.|+..||+++++|+||+.+|.
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 45
>PRK01415 hypothetical protein; Validated
Probab=99.63 E-value=9.4e-16 Score=151.30 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=84.4
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
..|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+.+.... +.. ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~-------~~~---------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAW-------VQQ---------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHH-------Hhh---------hh
Confidence 3699999999995 678999999999999999999999 8887665432111 100 01
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aG 396 (468)
.++++++|++||.+|.||..++..|++.||++||.|+||+.+|.+..
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 13688999999999999999999999999999999999999999743
No 46
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.63 E-value=8e-16 Score=133.02 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=75.0
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 012218 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (468)
Q Consensus 271 ~ISp~el~elL~~~-----~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI 345 (468)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+..+...+.+. +.....
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~----------~~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQV----------YALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHH----------HHHhhh
Confidence 58999999999654 46899999999 99999999999 99987665443322 111111
Q ss_pred hhhcccCCCceEEEEeCC-CchHHHHHHHHHH----ccC--CCEEEecchHHHHH
Q 012218 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLRK----LGV--MRAFLVQGGFQSWV 393 (468)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~----~Gf--~nV~vLdGG~~aW~ 393 (468)
.+.++||+||.+ |.||..++.+|.+ .|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 356789999997 5788888766543 475 68999999999996
No 47
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.2e-15 Score=151.39 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=100.3
Q ss_pred ccCHHHHHHHHhCCC-----CcEEEEcCCh--hhHhhcCCCCCcccccccccccCccccc-ch--hhhhhcCchhhHHHH
Q 012218 271 DLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDTL 340 (468)
Q Consensus 271 ~ISp~el~elL~~~~-----~avLIDVRs~--~Ey~~gHIPGA~~a~~~~~~nIPl~el~-~~--l~~ll~~~~~L~~~l 340 (468)
-|+++++.+.+. ++ ++.+++.+.. .+|.++|||||+ .++..... .. .++++|+++.+.+.+
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 589999999884 33 5667777665 899999999998 55543322 22 367899999999999
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCccccccccc
Q 012218 341 TAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETA 407 (468)
Q Consensus 341 ~alGI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~~~~ 407 (468)
+++|| ++|++||+|+..+. .|.+++|.|+.+|+++|++|+||+++|+++|+|++...+..+
T Consensus 83 ~~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~ 144 (285)
T COG2897 83 GELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPP 144 (285)
T ss_pred HHcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence 99999 78999999997655 789999999999999999999999999999999998655433
No 48
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.60 E-value=2.9e-15 Score=128.85 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCC
Q 012218 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (468)
Q Consensus 285 ~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG 364 (468)
....+||+|+++||..+|||||+ |+|+.++...+.+. . .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~--------------~------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATA--------------V------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHh--------------C------CCCCCeEEEEeCCC
Confidence 35679999999999999999999 99987665433221 1 15678999999999
Q ss_pred chHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 365 ~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.||..++..|+++||++++++ ||+.+|.-
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999975
No 49
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.59 E-value=3.1e-15 Score=148.43 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=82.5
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 012218 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (468)
Q Consensus 270 ~~ISp~el~elL~~~-----~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alG 344 (468)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++...... +.+.
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~-------l~~~----- 169 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEA-------LAAH----- 169 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHH-------HHhh-----
Confidence 469999999988642 34899999999999999999999 9998776543221 1110
Q ss_pred HhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
+.. .++++|++||.+|.||..++..|++.||++|++|+||+.+|.+
T Consensus 170 ---~~~-~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 170 ---RAD-LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred ---hhh-cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 001 2688999999999999999999999999999999999999987
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.58 E-value=6.1e-15 Score=150.16 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=83.4
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk 349 (468)
..++++++.++++ +++.+|||||++.||+.||||||+ |+|+..+.+.... +.+ .++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~-------l~~---~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPW-------VEE---NLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHH-------HHH---hcC-----
Confidence 3699999999984 567999999999999999999999 8888766542211 111 111
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
..++++||+||.+|.||..++.+|++.||++|++|+||+.+|.+
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 25789999999999999999999999999999999999999987
No 51
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.57 E-value=5.6e-15 Score=127.89 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=66.9
Q ss_pred CcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCc
Q 012218 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (468)
Q Consensus 286 ~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~ 365 (468)
.-++||+|+++||+.+|||||+ |+|+.++...+. .++. +++++||+||++|.
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~--------------~l~~------~~~~~IVlyC~~G~ 71 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIA--------------TAVP------DKNDTVKLYCNAGR 71 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHH--------------hcCC------CCCCeEEEEeCCCh
Confidence 4579999999999999999999 999865543322 1111 56789999999999
Q ss_pred hHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 366 RSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 366 RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
||..+++.|.+.||+++++ .||+.+|.-
T Consensus 72 rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 72 QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 9999999999999999987 699999975
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.55 E-value=2.3e-14 Score=147.75 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=94.4
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccch-----------------hhhhhcCchh
Q 012218 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-----------------VKKLLRGGRE 335 (468)
Q Consensus 273 Sp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~-----------------l~~ll~~~~~ 335 (468)
...++.+++. ++.+|||||+|.||.+||||||+ |+|+....++ ++..+.+++
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~- 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGN- 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchh-
Confidence 4567777653 47899999999999999999999 8988433211 111111111
Q ss_pred hHHHHHHHHHhhhcccC-CCceEEEEe-CCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCccccccccchhhchh
Q 012218 336 LDDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNE 413 (468)
Q Consensus 336 L~~~l~alGI~~Lk~l~-kd~~IVVyC-~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~~~~l~i~~~ 413 (468)
+.+.+... +...+ ++++||+|| ++|.||..+++.|+..|| ++++|+||+.+|++.+++.....+
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~--------- 138 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP--------- 138 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc---------
Confidence 11111111 11122 788999999 578999999999999999 699999999999997775443211
Q ss_pred hHHHHHHHhcCCCcEEEEEeeccccchhHHHHHH
Q 012218 414 DAEAILEDINSSPVQFLGFGVSGRRRYNLLLLLA 447 (468)
Q Consensus 414 ~~e~~lq~ir~~~~~lLg~llG~~~~~~~~~~~~ 447 (468)
.+....++++.+|.++..-+..|..
T Consensus 139 ---------~~~~~ivl~G~TGsGKT~iL~~L~~ 163 (345)
T PRK11784 139 ---------AQFPLVVLGGNTGSGKTELLQALAN 163 (345)
T ss_pred ---------ccCceEecCCCCcccHHHHHHHHHh
Confidence 1223456666777777766665543
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.48 E-value=1.7e-13 Score=121.38 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=74.8
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchh--------hhhhcCchhhHHHHH
Q 012218 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (468)
Q Consensus 271 ~ISp~el~elL~~~-~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l--------~~ll~~~~~L~~~l~ 341 (468)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+.... ..+++.++..+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRD---- 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHH----
Confidence 38999999999643 57999999999999999999998 78775432110 00111111111
Q ss_pred HHHHhhhcccCCCceEEEEeCCCch---------HHHHHHHHHH--ccCCCEEEecchHHHHHH
Q 012218 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 342 alGI~~Lk~l~kd~~IVVyC~sG~R---------S~~AA~~L~~--~Gf~nV~vLdGG~~aW~~ 394 (468)
. +.. .++++|||||..+.+ +..+++.|.. .|+.+|++|+||+.+|++
T Consensus 69 ~-----l~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 69 R-----LRR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred H-----Hhc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 1 111 257899999998865 5556666666 466899999999999977
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.42 E-value=4.8e-13 Score=136.21 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=72.5
Q ss_pred CcEEEEcCChhhHhhcCCCCCcccccccccccCcccccch--hhhhhcCch----------hhHHHHHHHHHhhh-cccC
Q 012218 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGGR----------ELDDTLTAAVIRNL-KIVQ 352 (468)
Q Consensus 286 ~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~--l~~ll~~~~----------~L~~~l~alGI~~L-k~l~ 352 (468)
+.+|||||+|.||.+||||||+ |+|+....++ ++...+... .+...+.. .+..+ +..+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~-~i~~~~~~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAA-HVEQWRAFAD 72 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHH-HHHHHHhhcC
Confidence 4689999999999999999999 9998432221 111111000 00000111 11111 1124
Q ss_pred CCceEEEEe-CCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccc
Q 012218 353 DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (468)
Q Consensus 353 kd~~IVVyC-~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~ 402 (468)
++.+||+|| ++|.||..++++|+.+|| ++++|+||+.+|+..+.+....
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 455699999 478999999999999999 6999999999999998877654
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.12 E-value=1.9e-10 Score=114.84 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=97.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC---------ChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHH
Q 012218 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVR---------s~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~ 341 (468)
-++++.+.+.+. +++.+|||.. ...||..-|||||. +++...+.. -....+.++|.++.+++-.+
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~--~s~~~~~~lp~~e~Fa~y~~ 79 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISY--PSSPYRHMLPTAEHFAEYAS 79 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeecccccc--CCCcccccCccHHHHHHHHH
Confidence 478888888885 4779999985 25688889999886 444333321 12334566777777888888
Q ss_pred HHHHhhhcccCCCceEEEEeC--CCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCcccccc
Q 012218 342 AAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (468)
Q Consensus 342 alGI~~Lk~l~kd~~IVVyC~--sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~aGLPv~~~~~ 404 (468)
.+|+ +++..+|||++ .|+ .|.+++|.++..||++|+.|+||+++|+++|+|+...+.
T Consensus 80 ~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 80 RLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred hcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 8898 78889999999 777 788999999999999999999999999999999988764
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.07 E-value=2.2e-10 Score=123.03 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhHhhcCCCC----CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 275 KSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 275 ~el~elL~~~~~avLIDVRs~~Ey~~gHIPG----A~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
.+..+.+ .++.++||||+++||+.+|||| |+ |+|+.++......
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~---------------------- 445 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGD---------------------- 445 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhh----------------------
Confidence 3444444 3578999999999999999999 87 8998666432211
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecc
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQG 387 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdG 387 (468)
++++++||+||++|.||..++..|+.+||++|+++.+
T Consensus 446 l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 446 LDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 3678899999999999999999999999999998753
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.97 E-value=6.1e-10 Score=111.91 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=80.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
-|+|+|+.+++ .+++.++||.|..-||+-||..||+ +.+...|.+...+ +++.. .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~-------v~~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAW-------VEENL---------D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHH-------HHHHH---------H
Confidence 58999999999 4788999999999999999999998 6665555543332 11111 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.-++++|+.||.+|.|...+..+|...||++||.|+||+-.+.+
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 13567999999999999999999999999999999999987765
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.3e-07 Score=96.47 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=72.9
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 012218 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (468)
Q Consensus 270 ~~ISp~el~elL~~~-----~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alG 344 (468)
+.|+|+.++.++++. ...+|||+|-|-||..|||+||+ |++..+.....- ......
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f---~~~~~~-------- 216 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF---LLKDGV-------- 216 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh---cccccc--------
Confidence 579999999999642 13679999999999999999998 877644322111 000000
Q ss_pred HhhhcccCCCceEEEEeCC-CchHHHHHHHHHH------------ccCCCEEEecchHHHHHHc
Q 012218 345 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (468)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~------------~Gf~nV~vLdGG~~aW~~a 395 (468)
+...+...+||||.. -.|...+|+.|+. +-|..+|+|+||+..|-..
T Consensus 217 ----~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 217 ----PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ----ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 000234568999975 4588999999983 4456899999999999874
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.37 E-value=5.5e-07 Score=90.39 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=78.3
Q ss_pred CCcEEEEcCChhhH-----------hhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 012218 285 ENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (468)
Q Consensus 285 ~~avLIDVRs~~Ey-----------~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~k 353 (468)
.+...+|.|...+| ..|||||++ |+|+.++...-..+ +.++++...+...++ ..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~-k~~edl~~~f~~~~l------~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFI-KPAEDLKHLFAQKGL------KL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhccccccc-CCHHHHHHHHHhcCc------cc
Confidence 45889999998888 347999999 99998776544333 236777887777776 56
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 012218 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
++|+|+-|..|..+...+-.|.+.| .++.+++|++..|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 789999999999985
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.00023 Score=72.78 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=69.8
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 012218 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (468)
Q Consensus 270 ~~ISp~el~elL~~~-----~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alG 344 (468)
++|+++.+++++++. .+.+|||.|-+-||..|||-+|+ ||.-.+ . +.-++..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~----------l~~~F~h-- 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---K----------LGLLFRH-- 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---H----------HHHHHHh--
Confidence 589999999998642 24679999999999999999988 764311 1 1111100
Q ss_pred HhhhcccCCCceEEEEeCC-CchHHHHHHHHHHc------------cCCCEEEecchHHHHHH
Q 012218 345 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~~------------Gf~nV~vLdGG~~aW~~ 394 (468)
|.+..-+-+|++|.. ..|+...|.-|+.+ -|..||+|+||+...-.
T Consensus 299 ----kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 ----KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ----ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 112335668999975 56999999888543 25689999999988765
No 61
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=95.64 E-value=0.0017 Score=54.03 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
+||||||+|+......+|++.+ |++|+-+.++ ..++.|.|+-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~~G--Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAEAG--VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSSTS---B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccccc--cccchHHHHH-HHHHHHHHHHHHhc
Confidence 6899999999977888999999 9999999999 88999999988875
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=94.73 E-value=0.046 Score=55.89 Aligned_cols=96 Identities=25% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCcEEEEcCChhhHhhcCCCCCcccccccccccCccccc--chhhhhhcC---------------chhhHHHHHHHHHhh
Q 012218 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKKLLRG---------------GRELDDTLTAAVIRN 347 (468)
Q Consensus 285 ~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~--~~l~~ll~~---------------~~~L~~~l~alGI~~ 347 (468)
.+..|||||.|.||..||-|++. |.|.-.=. ..+..-.+- ++-....+.+.
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as---- 81 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS---- 81 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 36789999999999999999988 66641100 011000000 00001111111
Q ss_pred hcccCCCceEEEEeCC-CchHHHHHHHH-HHccCCCEEEecchHHHHHH
Q 012218 348 LKIVQDRSKVIVMDAD-GTRSKGIARSL-RKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~s-G~RS~~AA~~L-~~~Gf~nV~vLdGG~~aW~~ 394 (468)
+....+.++-++|.. |.||...+.+| ...|++ .-.+.||+.+.+.
T Consensus 82 -k~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt 128 (334)
T COG2603 82 -KAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT 128 (334)
T ss_pred -HHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH
Confidence 112345566666865 55999999999 777874 5566799887654
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.60 E-value=0.095 Score=47.28 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=58.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCc------ccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~------~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~al 343 (468)
+.++++++..+.+ ..=-.|||.|+..|.... |... ....+.+.++|+.. ..+ +++.+....+.+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5799999988653 334579999998774422 2210 01123344666531 111 112222211111
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHHH-HHccCCCEEEecchHHHHHHcCCCccc
Q 012218 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (468)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L-~~~Gf~nV~vLdGG~~aW~~aGLPv~~ 401 (468)
. ..+.||++||++|.|+..++..+ ...|...--+ +..=++.|+.++.
T Consensus 83 -----~--~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 -----G--AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred -----H--hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 24579999999999987765443 3445532111 1233556665553
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.18 E-value=0.081 Score=46.58 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC------cccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA------~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~al 343 (468)
+.++++++.++-+ ..=-.||+.|+..|-. +-|.. ....-+.|.++|+..-. + +++.++...+.
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~--~-----~~~~v~~f~~~- 81 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGA--I-----TEEDVEAFADA- 81 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT---------HHHHHHHHHH-
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCC--C-----CHHHHHHHHHH-
Confidence 6899999998875 3345799999876532 22321 11222345577763211 1 11222222111
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHH
Q 012218 344 VIRNLKIVQDRSKVIVMDADGTRSKGIAR 372 (468)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~ 372 (468)
+. ....||.+||++|.|+...+.
T Consensus 82 ----l~--~~~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 82 ----LE--SLPKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp ----HH--TTTTSEEEE-SCSHHHHHHHH
T ss_pred ----HH--hCCCCEEEECCCChhHHHHHH
Confidence 11 235699999999999865543
No 65
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.20 E-value=0.027 Score=58.48 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=71.6
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchHHHHHhhh-------------
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTS------------- 253 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf~~--~~PvL~~~~~vg~~------------- 253 (468)
+||++|++|++++.-.+|++.+ +++|+.+.++ ..++.|.++-++|... ..-++.+-.+-.-.
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~~g--v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDTAG--IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCccCC--cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 5899999998776556788888 9999988877 7888888887766421 11121110000000
Q ss_pred -----HH--HHHHHH------HHHh-------CCCCcccCHHHHHHHHhC-----CCCcEEEEcCChhhHhhcCCCCCc
Q 012218 254 -----AT--LWIFYW------WWTY-------GGYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (468)
Q Consensus 254 -----aa--l~l~~~------l~~~-------~~y~~~ISp~el~elL~~-----~~~avLIDVRs~~Ey~~gHIPGA~ 307 (468)
.. -.+.+- .+.. .+....++++++.++++. +.+..+||+|++. |+-.|+|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 00 000000 1111 111236899999988832 3578999999998 9999999864
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.94 E-value=0.15 Score=56.18 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~ 350 (468)
+|+++++..+ ....++|.|...||.++|+++++ |+|+..-++....+.. +. ++..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l~------~~~~--- 677 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----LP------GIVC--- 677 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----ch------HhHH---
Confidence 4566655544 25679999999999999999999 9998632333322111 11 1100
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHH
Q 012218 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (468)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW 392 (468)
..+..++++......+.+....+..+-+.+..++.+|+++.
T Consensus 678 -~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 678 -SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred -hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 23444555544444555555555555577777888888843
No 67
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=88.49 E-value=0.36 Score=49.03 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=56.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccc--------hhhhhhcCchhhHHHHHH
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--------SVKKLLRGGRELDDTLTA 342 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~--------~l~~ll~~~~~L~~~l~a 342 (468)
.++.+++.+.+ ..++.+++|.|+ +..||.+|. ++.++.+.. .++.++|+......
T Consensus 5 ~~s~~wlnr~l-~~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~---- 67 (343)
T KOG1717|consen 5 SKSVAWLNRQL-ELGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR---- 67 (343)
T ss_pred HHHHHHHHhhc-ccCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc----
Confidence 35677777777 356799999999 556888876 443333211 11222232222110
Q ss_pred HHHhhhcccCCCceEEEEeCCCc------hHHH----HHHHHHHccCCCEEEecchHHHHHH
Q 012218 343 AVIRNLKIVQDRSKVIVMDADGT------RSKG----IARSLRKLGVMRAFLVQGGFQSWVK 394 (468)
Q Consensus 343 lGI~~Lk~l~kd~~IVVyC~sG~------RS~~----AA~~L~~~Gf~nV~vLdGG~~aW~~ 394 (468)
.+.--+..++|.|+.+.. .+.. .-+.++..|+ .+|.|.|||...+.
T Consensus 68 -----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 -----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred -----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000012357888987621 0111 1234567787 69999999986664
No 68
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=86.47 E-value=3 Score=38.35 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=19.2
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhc
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERD 301 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~g 301 (468)
..+|+++...+.+ -.=-.|||.|++.|..+.
T Consensus 28 ~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 28 SNLTEADLERLRE-LGIRTIIDLRSPTERERA 58 (164)
T ss_dssp TT--HHHHHHHHH-TT--EEEE-S-HHHHHHH
T ss_pred CcCCHHHHHHHHh-CCCCEEEECCCccccccC
Confidence 5799998877752 233579999999998775
No 69
>PRK08223 hypothetical protein; Validated
Probab=84.02 E-value=0.62 Score=47.71 Aligned_cols=52 Identities=17% Similarity=-0.003 Sum_probs=36.2
Q ss_pred eEEEeeccCCCCCCCc---hHH----------HhhhhhHhhhhhc----------------ccccchHHHHHHHHHHHHH
Q 012218 183 FVVYYYGTTKESLPPE---IRD----------ALNLYEDRAVKLW----------------RPVGSALQQVSVAIEGLER 233 (468)
Q Consensus 183 ~~~~~~G~~~~~l~p~---~~~----------~~~~~e~~~~~v~----------------~p~g~~~~q~~~~ie~le~ 233 (468)
++++..||||+|++|+ ..+ .+-+|.+.+ ++ +|+++.++ ..++.|.++-
T Consensus 160 ~v~~p~~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~g--vl~~~~~~~~~~~~~p~~g~~~g~~g-~~~a~E~ik~ 236 (287)
T PRK08223 160 LVFDPGGMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRG--YLADPSRVDLENRTGPSTGLACQLCA-GVVATEVLKI 236 (287)
T ss_pred EEEcCCCCchhhhcCCCCCCCchhhhcccCCcCCCccccCC--ccccccccccccccCCCccchHHHHH-HHHHHHHHHH
Confidence 3444468999999987 433 556888888 66 66666666 6667777776
Q ss_pred hcCC
Q 012218 234 SLGF 237 (468)
Q Consensus 234 ~lgf 237 (468)
++|.
T Consensus 237 l~g~ 240 (287)
T PRK08223 237 LLGR 240 (287)
T ss_pred HhCC
Confidence 6653
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=83.43 E-value=3.6 Score=35.85 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.7
Q ss_pred CCceEEEEeCCCc-hHHHH--HHHHHHccC
Q 012218 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (468)
Q Consensus 353 kd~~IVVyC~sG~-RS~~A--A~~L~~~Gf 379 (468)
.+.+|+|+|..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997 87644 344455554
No 71
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=72.01 E-value=0.94 Score=46.76 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchhhhh
Q 012218 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKL 329 (468)
Q Consensus 268 y~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA~~a~~~~~~nIPl~el~~~l~~l 329 (468)
|..-=+|+++.+.+. .....+|+|.+..|..+||||++ ++|...+....+.+
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l 63 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWL 63 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHH
Confidence 333456788888774 35679999999999999999999 88886666655544
No 72
>PLN02727 NAD kinase
Probab=67.57 E-value=8.8 Score=45.19 Aligned_cols=92 Identities=10% Similarity=0.150 Sum_probs=48.7
Q ss_pred cccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCC----CcccccccccccCcccccchhhhhhcCchhhHHHHHHHHH
Q 012218 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (468)
Q Consensus 270 ~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPG----A~~a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI 345 (468)
++++|+++.++.+ ..=-.||+.|+..|- .+..+- +.....+.+.++|++.-.. ++++.+++..+.+.-
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHHHh
Confidence 5899999988764 333469999997772 222211 1111223445677632211 112223332221100
Q ss_pred hhhcccCCCceEEEEeCCCch-HH-HHHHHHH
Q 012218 346 RNLKIVQDRSKVIVMDADGTR-SK-GIARSLR 375 (468)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~sG~R-S~-~AA~~L~ 375 (468)
...+||++||++|.| +. .+|.+|.
T Consensus 339 ------slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hcCCCEEEECCCCCchHHHHHHHHHH
Confidence 246899999999994 32 3444454
No 73
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=67.36 E-value=3.3 Score=37.73 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHHHhhhh
Q 012218 169 TIVALEES 176 (468)
Q Consensus 169 ~~~~~~~~ 176 (468)
.+..+++.
T Consensus 112 ~~~~~~~~ 119 (202)
T PF01442_consen 112 EVDELEES 119 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=64.96 E-value=13 Score=38.48 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhh---cCCC
Q 012218 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (468)
Q Consensus 271 ~ISp~el~elL~~~~~avLIDVRs~~Ey~~---gHIP 304 (468)
.+...++.+.+. ..+..+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCC
Confidence 466778888885 45688999999999998 8888
No 75
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=63.07 E-value=30 Score=32.23 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEE--ecc----------hHHHHHHcCCCccccccccchhhchhhHH
Q 012218 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQG----------GFQSWVKEGLRIKELKSETALTILNEDAE 416 (468)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~v--LdG----------G~~aW~~aGLPv~~~~~~~~l~i~~~~~e 416 (468)
++..+|+++|..|+ ....+|+.|...|++ |.+ +.. -++.+++.|.++.......+...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 95 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSE------ 95 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGH------
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhc------
Confidence 57789999999887 567799999999995 554 322 12355566666655332222210
Q ss_pred HHHHHhcCCCcEEEEEeeccccchh
Q 012218 417 AILEDINSSPVQFLGFGVSGRRRYN 441 (468)
Q Consensus 417 ~~lq~ir~~~~~lLg~llG~~~~~~ 441 (468)
.+. .+..++=.++|.+.+..
T Consensus 96 ----~~~-~~dlIIDal~G~G~~~~ 115 (169)
T PF03853_consen 96 ----ALE-PADLIIDALFGTGFSGP 115 (169)
T ss_dssp ----HGS-CESEEEEES-STTGGSC
T ss_pred ----ccc-cccEEEEecccCCCCCC
Confidence 122 23555555777765543
No 76
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=62.97 E-value=6.2 Score=38.92 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=43.4
Q ss_pred cCcceEEEee--ccCCCCCCCchHH--Hhh-hhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 179 NGASFVVYYY--GTTKESLPPEIRD--ALN-LYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 179 ~~~~~~~~~~--G~~~~~l~p~~~~--~~~-~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
.+.-+++... ++|++|++|+..+ .+. .|++.+ +++|..+... ..+++|.++.+.+.
T Consensus 157 ~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~g--v~~~~~~~~~-~~~~~~~~k~~~g~ 217 (254)
T COG0476 157 EGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAG--VLGPLVGVVG-SLQALEAIKLLTGI 217 (254)
T ss_pred eEEEEEEecCCCCCcccccCCCCCCccccccccccCC--ccccccchhh-hHHHHHHHHHhcCC
Confidence 3444455555 6899999999986 233 488888 9999999999 88888888888875
No 77
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.80 E-value=16 Score=33.27 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=48.1
Q ss_pred CcccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC------cccccccccccCcc--cccchhhhhhcCchhhHHHH
Q 012218 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGGSVKKLLRGGRELDDTL 340 (468)
Q Consensus 269 ~~~ISp~el~elL~~~~~avLIDVRs~~Ey~~gHIPGA------~~a~~~~~~nIPl~--el~~~l~~ll~~~~~L~~~l 340 (468)
.+.++++++.++-+ ..=..+|--|+..|= -.=|+. ....-+.|.+||.. .+.. ++++..-
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~---------~dV~~f~ 80 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE---------ADVEAFQ 80 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCH---------HHHHHHH
Confidence 47899999988863 233568888985443 122332 11122344566662 2221 1122211
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHH
Q 012218 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (468)
Q Consensus 341 ~alGI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~ 373 (468)
+++. ..+.||+.||++|.||...+..
T Consensus 81 ~Al~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 81 RALD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HHHH-------HhCCCEEeeecCCchHHHHHHH
Confidence 1111 3567999999999998766543
No 78
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=61.45 E-value=23 Score=33.82 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=33.4
Q ss_pred EEEcCChhhHhhcCCCCCcc---cccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCceEEEEeCCCc
Q 012218 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (468)
Q Consensus 289 LIDVRs~~Ey~~gHIPGA~~---a~~~~~~nIPl~el~~~l~~ll~~~~~L~~~l~alGI~~Lk~l~kd~~IVVyC~sG~ 365 (468)
||=.-+..|..+-.+|+-.. ..-+.|-++|+++.... +.+...+.+..+- ..+..+++|+++|.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~----~~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELA----ARLENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHH----HHHHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHH----HHHHcCCEEEEECCCCC
Confidence 44467777887777775421 11123446666443211 1111111111111 11246789999999987
Q ss_pred -hHHH-HHHHHHHcc
Q 012218 366 -RSKG-IARSLRKLG 378 (468)
Q Consensus 366 -RS~~-AA~~L~~~G 378 (468)
|+.. +|..|.++|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 7766 556677666
No 79
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=60.90 E-value=25 Score=38.57 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=19.5
Q ss_pred CcEEEEcCChhhHhhcCCCCCc
Q 012218 286 NAVLIDVRHEDLRERDGIPDLR 307 (468)
Q Consensus 286 ~avLIDVRs~~Ey~~gHIPGA~ 307 (468)
+..+||.|+.++|..||.-.|.
T Consensus 326 rFFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEEeccchhhcccccchhhh
Confidence 4679999999999999998765
No 80
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=60.51 E-value=28 Score=30.50 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 012218 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (468)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~~Gf 379 (468)
..+.+|+|+|..|. ||.. +++.+...|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 56789999999996 7765 4445666666
No 81
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=57.92 E-value=5.6 Score=39.47 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=33.1
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
++|++|++|+..+.-..|.+.+ +++|.-+.++ ..++.|.++-++|+
T Consensus 171 ~~c~~c~~~~~~~~~~~~~~~g--v~~~~~~~~~-~~~a~e~ik~l~g~ 216 (245)
T PRK05690 171 EPCYRCLSRLFGENALTCVEAG--VMAPLVGVIG-SLQAMEAIKLLTGY 216 (245)
T ss_pred CceeeeccCCCCCCCCCcccCC--ccchHHHHHH-HHHHHHHHHHHhCC
Confidence 3799999987654323677777 8888887777 66777777766664
No 82
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=57.83 E-value=8.4 Score=34.10 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.4
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----cCCCEEEecchHHHH
Q 012218 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (468)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~~----Gf~nV~vLdGG~~aW 392 (468)
|+|+|.+.. ||..+...++++ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998755 998888888877 667889999988766
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.75 E-value=5.2 Score=41.71 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=31.3
Q ss_pred eccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcC
Q 012218 188 YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLG 236 (468)
Q Consensus 188 ~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lg 236 (468)
.+||++|+.|++...-.+|+..+ +++|+.+.+. ..++.|.++-++|
T Consensus 163 ~tpC~~Cl~~~~p~~~~~c~~~G--vl~p~v~~ia-slqa~EalK~L~g 208 (338)
T PRK12475 163 KTPCLRCLMEHVPVGGATCDTAG--IIQPAVQIVV-AYQVTEALKILVE 208 (338)
T ss_pred CCCCHHHhcCCCCCCCCCCccCC--cCchHHHHHH-HHHHHHHHHHHhC
Confidence 35899999987654334577666 7778776666 6666666665544
No 84
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=55.92 E-value=31 Score=29.04 Aligned_cols=60 Identities=7% Similarity=0.195 Sum_probs=32.9
Q ss_pred hhhhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhh
Q 012218 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRV 129 (468)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (468)
.|.++...++++...+.+.....+.+..+-+++.+++++..+..+...+.+.+..+...+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 65 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQT 65 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555555555555555555554444444444444433
No 85
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=54.97 E-value=8.4 Score=36.95 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=28.5
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHH
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLE 232 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le 232 (468)
++|++|++++..+...+|...+ +++|..+... ..++.|.++
T Consensus 160 ~~c~~c~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~a~e~~k 200 (202)
T TIGR02356 160 GPCLRCLFPDIADTGPSCATAG--VIGPVVGVIG-SLQALEALK 200 (202)
T ss_pred CCChhhcCCCCcccCCCCccCC--ccchHHHHHH-HHHHHHHHH
Confidence 4899999998555555666555 7888777766 555555544
No 86
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=54.56 E-value=6.8 Score=41.15 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=34.3
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
++|++|++|+.++ ...+|.+.+ +++|..+.++ ..++.|.++-++|+
T Consensus 277 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~~-~~~a~e~~k~l~g~ 324 (376)
T PRK08762 277 APCYRCLFPEPPPPELAPSCAEAG--VLGVLPGVIG-LLQATEAIKLLLGI 324 (376)
T ss_pred CCCHhhcCCCCCCcccCCCCccCC--cchhhHHHHH-HHHHHHHHHHHhCC
Confidence 5899999886543 345677777 8888887777 77777777777764
No 87
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.97 E-value=9.6 Score=37.75 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=29.5
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
+||++|+.+..++-...|.+.+ +++|.-+.++ ..++.|.++-++|+
T Consensus 163 ~~c~~C~~~~~~~~~~~~~~~g--v~~p~~~~~~-~~~a~e~ik~l~g~ 208 (240)
T TIGR02355 163 EPCYRCLSRLFGENALSCVEAG--VMAPVVGVVG-SLQAMEAIKVLAGI 208 (240)
T ss_pred CCccccccccCCCCCCCccccC--ccchHHHHHH-HHHHHHHHHHHhCC
Confidence 3799999665543223455555 7777777776 56666666666653
No 88
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=52.51 E-value=20 Score=32.98 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCceEEEEe-C----CCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 012218 352 QDRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 352 ~kd~~IVVyC-~----sG~RS~~AA~~L~~~Gf~nV~vLdGG~~aW~ 393 (468)
+++.++++++ . .|..-..+++.|+++|..++.+|+||-....
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 4454555554 4 3667788999999999999999999976443
No 89
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=47.39 E-value=80 Score=27.23 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=20.4
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 012218 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (468)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~~Gf~ 380 (468)
.++.+|+|+|..|. ||.. ++..+...|.+
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 46789999999997 7665 33445556663
No 90
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=47.02 E-value=20 Score=31.78 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=27.8
Q ss_pred EEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 012218 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (468)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW 392 (468)
|+|+|.+.. ||..+..+|++..-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897654 999998888877644688888888766
No 91
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=43.44 E-value=33 Score=32.17 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=33.9
Q ss_pred cccCCCceEEEEeCCCc--hHHHHHHHHHHc---cCCCEEEecchHHHHH
Q 012218 349 KIVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSWV 393 (468)
Q Consensus 349 k~l~kd~~IVVyC~sG~--RS~~AA~~L~~~---Gf~nV~vLdGG~~aW~ 393 (468)
+.++++..+|+.|..|. .|...|..|.+. |..++..+-||-.++.
T Consensus 62 ~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~ 111 (157)
T PRK00103 62 AALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLS 111 (157)
T ss_pred hhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccC
Confidence 34566777888898886 788888888654 5558999999976664
No 92
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=42.91 E-value=44 Score=31.22 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=31.6
Q ss_pred hcccCCCceEEEEeCCCc--hHHHHHHHHHH---ccCCCEEEecchHHHH
Q 012218 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW 392 (468)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~--RS~~AA~~L~~---~Gf~nV~vLdGG~~aW 392 (468)
++.++++..+|+.|..|. .|...|..|.+ .|..++..+-||-.+.
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 445567888999999987 68888888765 6777899999987544
No 93
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=2.3e+02 Score=31.74 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=80.7
Q ss_pred hhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhhcccCCCcCCCccccc---
Q 012218 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (468)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--- 148 (468)
...+..++-++..|+--++..--+ |.=+...||++|.-. |.|++ .-..-.++-.+|. -++.+.++.+|+
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNV---A~eiA~~LcEsV~--a~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNV---AAEIAEKLCESVA--ASLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--Hhhhh---hHHHHHHHHHHHH--HHhhhcccccchHHH
Confidence 445556777777777633332222 444666677666542 22222 1122334444443 356678888887
Q ss_pred chhHHHhhhc------cchhHHHHHHHHHHhhhhcccCcceEEEeec------------cCCCCCCCchHHHhhhhhHhh
Q 012218 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG------------TTKESLPPEIRDALNLYEDRA 210 (468)
Q Consensus 149 ~~~~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G------------~~~~~l~p~~~~~~~~~e~~~ 210 (468)
+..++|...| +.+++|.||.-+.+=+. .|||++-.-| -||-.|.-.++=++.-|+
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~----krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACD--- 415 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARRR----KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACD--- 415 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc----CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEecc---
Confidence 4455555544 66899999998876554 4899988877 233334444443444444
Q ss_pred hhhcccccchHHHHHHHHHHHHHhcC
Q 012218 211 VKLWRPVGSALQQVSVAIEGLERSLG 236 (468)
Q Consensus 211 ~~v~~p~g~~~~q~~~~ie~le~~lg 236 (468)
-|+ -|+.+|..--.+.|..+.+
T Consensus 416 --TFR--sGAvEQLrtHv~rl~~l~~ 437 (587)
T KOG0781|consen 416 --TFR--SGAVEQLRTHVERLSALHG 437 (587)
T ss_pred --chh--hhHHHHHHHHHHHHHHhcc
Confidence 222 2455555555555555444
No 94
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=38.99 E-value=1.3e+02 Score=31.80 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=43.7
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhh
Q 012218 75 KSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS 132 (468)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (468)
.+-+.++...++..-.+-.++..++|++.++..+..+.+-.++..+|++.|+.++...
T Consensus 123 ~a~~~qt~~dl~~~~~t~~~~~~~~y~~~i~~a~~~v~tG~~t~~~Ai~~av~~~~~~ 180 (361)
T PF06152_consen 123 EALVRQTKGDLNNVNQTLLRTAQDVYRRIIDEAVAQVVTGAFTYQQAIRDAVKKLADS 180 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc
Confidence 3344566666643334455679999999999999998888888899999999876654
No 95
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=37.91 E-value=31 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012218 440 YNLLLLLALVRLFIGGWLHTMMLKILS 466 (468)
Q Consensus 440 ~~~~~~~~~v~~~~g~~~~~~m~~~l~ 466 (468)
.++..+.|+++++.|-++||-+.++|.
T Consensus 33 ~~~~~~~g~~ll~~g~~g~Cp~~~llg 59 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFCPLYALLG 59 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcCHhHHHhC
Confidence 566777777799999888889998884
No 96
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=37.10 E-value=86 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHhhhhcc
Q 012218 166 LRNTIVALEESMT 178 (468)
Q Consensus 166 l~~~~~~~~~~~~ 178 (468)
.+++...+++-+-
T Consensus 58 ~~~~~~~~~~~V~ 70 (94)
T PF05957_consen 58 AREAAEQTEDYVR 70 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 97
>PRK12361 hypothetical protein; Provisional
Probab=36.80 E-value=1.3e+02 Score=33.10 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=14.2
Q ss_pred CCCceEEEEeCCCc-hHHH
Q 012218 352 QDRSKVIVMDADGT-RSKG 369 (468)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~ 369 (468)
..+.+|+|+|..|. ||..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVL 191 (547)
T ss_pred HCCCeEEEECCCCCCcHHH
Confidence 45678999999987 7654
No 98
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.18 E-value=1.8e+02 Score=28.80 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=20.7
Q ss_pred CceEEEEeCCCchHHHHH-HHHHHccCC
Q 012218 354 RSKVIVMDADGTRSKGIA-RSLRKLGVM 380 (468)
Q Consensus 354 d~~IVVyC~sG~RS~~AA-~~L~~~Gf~ 380 (468)
.+..+++|.....+...+ ...++.||.
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 578899999988777654 455778985
No 99
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=34.30 E-value=18 Score=37.56 Aligned_cols=41 Identities=20% Similarity=0.002 Sum_probs=23.1
Q ss_pred eccCCCCCCCchH----------------HHhhhhhHhhhhhcccccchHHHHHHHHHHH
Q 012218 188 YGTTKESLPPEIR----------------DALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (468)
Q Consensus 188 ~G~~~~~l~p~~~----------------~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l 231 (468)
.+||++|+.|... +....|...+ +++|..+.++ ..++.|.+
T Consensus 200 ~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~gp~~giig-sl~a~Eai 256 (318)
T TIGR03603 200 ETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAE--LIFPLLNIKK-NLVVSEIF 256 (318)
T ss_pred CCCcHHHccchhhcccccccccccccccCCCCCCCccCC--eehhHHHHHH-HHHHHHHH
Confidence 3589999987211 1223455555 6666666555 44444444
No 100
>PRK10126 tyrosine phosphatase; Provisional
Probab=33.14 E-value=49 Score=30.04 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.7
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 012218 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (468)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW 392 (468)
.+|+|+|.+.. ||..|...|+..+- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 46999997655 99999888988763 466667777555
No 101
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=32.87 E-value=33 Score=30.91 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHH----hhhhcccCcce--------EEEee------------ccCCCCCCCchHHHhhhhhHhhhhhccc
Q 012218 161 AAVDVLRNTIVA----LEESMTNGASF--------VVYYY------------GTTKESLPPEIRDALNLYEDRAVKLWRP 216 (468)
Q Consensus 161 ~~~d~l~~~~~~----~~~~~~~~~~~--------~~~~~------------G~~~~~l~p~~~~~~~~~e~~~~~v~~p 216 (468)
|+.++|++.+.. -+-.|.|.|++ ..|.= ||++..++-++....+ .......+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~----~~~~~~~~ 76 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLD----EAGFEESM 76 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhC----cCCCCCCC
Confidence 356788888752 23457888875 44543 8999888776654332 11112222
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCcchHH
Q 012218 217 VGSALQQVSVAIEGLERSLGFDPNDPIVPFV 247 (468)
Q Consensus 217 ~g~~~~q~~~~ie~le~~lgf~~~~PvL~~~ 247 (468)
.... ++..+ +-..+|+.++++++++.
T Consensus 77 ~p~~-~~~~~----~~~~~GI~~~~~vVvY~ 102 (138)
T cd01445 77 EPSE-AEFAA----MFEAKGIDLDKHLIATD 102 (138)
T ss_pred CCCH-HHHHH----HHHHcCCCCCCeEEEEC
Confidence 2221 22333 33447999999998764
No 102
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.84 E-value=72 Score=31.25 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.5
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 012218 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (468)
Q Consensus 354 d~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~vL 385 (468)
.++|+++|..|+ ....+|+.|+..|++ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 578999998776 577899999999984 4433
No 103
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=32.59 E-value=65 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=24.0
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 012218 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (468)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~vL 385 (468)
++|+|+|..|+ ....+|+.|...|| +|.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 67999998765 67789999999999 45544
No 104
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.28 E-value=74 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.4
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchH
Q 012218 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (468)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~ 389 (468)
+|+|+|.+.. ||..|..+|+.++-.++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 5899997654 999888889887755677777775
No 105
>PF09718 Tape_meas_lam_C: Lambda phage tail tape-measure protein (Tape_meas_lam_C); InterPro: IPR006431 This entry is represented by the C-terminal region of Bacteriophage lambda, GpH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group are characterised by a relatively well-conserved region near the C terminus of GpH - the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=31.26 E-value=1.5e+02 Score=24.22 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=26.0
Q ss_pred hhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhh
Q 012218 76 SSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTS 119 (468)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (468)
..+.+.+..+.|+-.+.-.+.+++.+++++.++..+.+-+.+-+
T Consensus 6 ~G~~~a~~~~~~~a~n~a~~~~~~~~~a~~~~~dal~~f~~tgK 49 (78)
T PF09718_consen 6 AGAKSALADYADSAQNVASQAEDAFSSAFDGMTDALVDFVTTGK 49 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555666666666666666666666666665555444333
No 106
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=30.47 E-value=83 Score=35.40 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.2
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchH
Q 012218 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGF 389 (468)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~vLdGG~ 389 (468)
-+.|||++.+.-..+-..|..|.++|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 467888888887778899999999999 799999985
No 107
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=29.89 E-value=2.5e+02 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=18.6
Q ss_pred CCCceEEEEeCCCc-hHHHH-HHHHHHcc
Q 012218 352 QDRSKVIVMDADGT-RSKGI-ARSLRKLG 378 (468)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~A-A~~L~~~G 378 (468)
.++.+|+|+|..|. ||... +..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 45789999999987 77653 44454433
No 108
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=29.77 E-value=40 Score=37.19 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=9.4
Q ss_pred CCceEEEEeCCCch
Q 012218 353 DRSKVIVMDADGTR 366 (468)
Q Consensus 353 kd~~IVVyC~sG~R 366 (468)
+.+||.++|..|+|
T Consensus 84 ~~Tpl~l~ATAGMR 97 (501)
T KOG1386|consen 84 KETPLFLGATAGMR 97 (501)
T ss_pred CCCCeEEEecccce
Confidence 45667777777765
No 109
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=29.50 E-value=63 Score=29.40 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.3
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 012218 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (468)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~~aW 392 (468)
.+|+|+|.+.. ||..+...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 36999997654 99988888887653 466677777655
No 110
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=28.79 E-value=79 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 012218 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (468)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~~Gf~ 380 (468)
.+..+|+|+|..|. ||.. +|+.+...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 45669999999987 7654 44556664543
No 111
>PRK08328 hypothetical protein; Provisional
Probab=28.77 E-value=28 Score=34.12 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=30.0
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 012218 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (468)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~le~~lgf 237 (468)
++|++|++|+..+ .+++.+ +++|..+..+ ..++.|.++-++++
T Consensus 166 ~~c~~~~~~~~~~---~~~~~~--~~~~~~~ii~-~~~a~e~~k~l~g~ 208 (231)
T PRK08328 166 TKRLREIFPKVKK---KKGKFP--ILGATAGVIG-SIQAMEVIKLITGY 208 (231)
T ss_pred CCCHHHhCCCCCC---ccccCC--cCchHHHHHH-HHHHHHHHHHHhCC
Confidence 4799999997542 234444 7888777777 77777777777664
No 112
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=27.72 E-value=93 Score=30.00 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 012218 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (468)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~vL 385 (468)
++.++|+++|..|+ ....+|+.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 44578999998765 67789999988776 57765
No 113
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.79 E-value=1.3e+02 Score=26.42 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=30.8
Q ss_pred CceEEEEeCCCc----hHHHHHHHHHHccCCCEEEecch------HHHHHHcCCC
Q 012218 354 RSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLR 398 (468)
Q Consensus 354 d~~IVVyC~sG~----RS~~AA~~L~~~Gf~nV~vLdGG------~~aW~~aGLP 398 (468)
+-.+|++|..-. ......+.|++.|+.++.++-|| ++.|.+.|+.
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 445777776533 23455677888999888888887 3457777753
No 114
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.58 E-value=1.6e+02 Score=27.66 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhhccc
Q 012218 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT 136 (468)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (468)
+|..+-+-+-+.+..+.+++++.++.+++-++.++..+-.-++.|
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et 75 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEET 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 333333344444556666677777666666666665555444433
No 115
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.30 E-value=2.9e+02 Score=25.95 Aligned_cols=51 Identities=6% Similarity=0.141 Sum_probs=20.0
Q ss_pred hhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhhc
Q 012218 84 GVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID 134 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (468)
.|++.|.+..++..+-+++-..++..-+...-..+.+++++.-.+|-.+++
T Consensus 27 Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~ 77 (155)
T PF07464_consen 27 EVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAE 77 (155)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333333333333333
No 116
>PRK10565 putative carbohydrate kinase; Provisional
Probab=26.01 E-value=94 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 012218 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (468)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~vL 385 (468)
++.++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 44567999998765 677899999999995 4433
No 117
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=25.15 E-value=1.8e+02 Score=31.09 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=7.4
Q ss_pred cceeccCCCC
Q 012218 48 LAIELTPENP 57 (468)
Q Consensus 48 ~~~~~~~~~~ 57 (468)
..+||+|..+
T Consensus 186 ~~I~I~P~~~ 195 (370)
T PLN03094 186 TLIDITPRDP 195 (370)
T ss_pred eeEEEecCCC
Confidence 4588998864
No 118
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=25.14 E-value=21 Score=40.14 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=13.9
Q ss_pred HHHHHHhcCCC--cEEEEEeeccccchhHHHHHHHH--HHHHh--hhhHHH
Q 012218 416 EAILEDINSSP--VQFLGFGVSGRRRYNLLLLLALV--RLFIG--GWLHTM 460 (468)
Q Consensus 416 e~~lq~ir~~~--~~lLg~llG~~~~~~~~~~~~~v--~~~~g--~~~~~~ 460 (468)
+++++++..+- +.-|+.+-=|.+|||+.||.=++ ..|++ +||+||
T Consensus 521 q~~I~~LN~tlVdLe~Ln~~e~YiKWPWyVWL~i~~~li~~~~~l~~~~~~ 571 (610)
T PF01601_consen 521 QEVIDNLNNTLVDLEWLNRYETYIKWPWYVWLAIILALIAFALILLWCCCM 571 (610)
T ss_dssp HHHHHHHHCCHHHCCHHTTCCCHH---------------------------
T ss_pred HHHHHHhhhhheeHHHhcceeEEeehHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666553 45567777899999988886554 24444 666544
No 119
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=24.78 E-value=66 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCC-CEEEecchHHHH
Q 012218 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (468)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~~Gf~-nV~vLdGG~~aW 392 (468)
+|+|+|.+.. ||..+..++++..-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 5899997655 898888888876543 677888887655
No 120
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=24.49 E-value=96 Score=32.99 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCC
Q 012218 353 DRSKVIVMDADGTRSKGIARSLRKLGVM 380 (468)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~~Gf~ 380 (468)
.+.++++.+.+|..|..+++++.+.|++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 3456788888888888888888888873
No 121
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=24.09 E-value=71 Score=27.99 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCCcEEEEcCC
Q 012218 274 PKSTLELLRGKENAVLIDVRH 294 (468)
Q Consensus 274 p~el~elL~~~~~avLIDVRs 294 (468)
.+++.+++...+--+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 456667665444458999995
No 122
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.95 E-value=95 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred eEEEEeCCCchHHHHH-HH----HHHccCCCEEEecch
Q 012218 356 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 388 (468)
Q Consensus 356 ~IVVyC~sG~RS~~AA-~~----L~~~Gf~nV~vLdGG 388 (468)
+|++.|.+|..+...+ .. +++.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 4899999998655444 44 5677864 4444433
No 123
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.75 E-value=94 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=26.2
Q ss_pred CceEEEEeCCCchHHHHHHH----HHHccCCCEEEecchHHHH
Q 012218 354 RSKVIVMDADGTRSKGIARS----LRKLGVMRAFLVQGGFQSW 392 (468)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~----L~~~Gf~nV~vLdGG~~aW 392 (468)
..+|+++|.+|..|..++.. +++.|+ ++.+-..++..-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi-~~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGV-PVKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCC-cEEEEEecHHHH
Confidence 35799999999977766655 466777 355555566544
No 124
>PRK13530 arsenate reductase; Provisional
Probab=23.47 E-value=1.2e+02 Score=27.07 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.2
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchH
Q 012218 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (468)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~~Gf~nV~vLdGG~ 389 (468)
++|+|+|.+.. ||..+..+++.++-.++.+...|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999997655 888888888776545677777776
No 125
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.30 E-value=86 Score=27.16 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=26.1
Q ss_pred eEEEEeCCCchHHHHHHHH----HHccCCCEEEecchHHHHH
Q 012218 356 KVIVMDADGTRSKGIARSL----RKLGVMRAFLVQGGFQSWV 393 (468)
Q Consensus 356 ~IVVyC~sG~RS~~AA~~L----~~~Gf~nV~vLdGG~~aW~ 393 (468)
+|++.|.+|..|..++..+ ++.|+ ++.+-..+...-.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHHH
Confidence 4889999998888777664 56677 4666666665443
No 126
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.43 E-value=3.8e+02 Score=27.87 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=40.3
Q ss_pred eCCCch--HHHHHHHHHHccCCCEEEecchHHHHHHcC--CCccccccccchhhchhhHHHHHHHhc-CCCcEEEEEeec
Q 012218 361 DADGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVKEG--LRIKELKSETALTILNEDAEAILEDIN-SSPVQFLGFGVS 435 (468)
Q Consensus 361 C~sG~R--S~~AA~~L~~~Gf~nV~vLdGG~~aW~~aG--LPv~~~~~~~~l~i~~~~~e~~lq~ir-~~~~~lLg~llG 435 (468)
|.-|.+ +....+.|++.|+ ++..+-=|=.+|..+| .++.. .+.++..-.+|..+-+.. ...+.++-+ =|
T Consensus 122 cavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia~~Gv~iDa----v~~DFvaGavE~~v~~~~~~~d~ivVEG-Qg 195 (301)
T PF07755_consen 122 CAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIAGYGVPIDA----VPSDFVAGAVEALVPEAAEEHDWIVVEG-QG 195 (301)
T ss_dssp SSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GGG----SBGGGHHHHHHHHHHHHCCC-SEEEEE---S
T ss_pred ccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEecCCeeccc----hhhhhHHHHHHHHHHhhCcCCCEEEEec-cc
Confidence 566764 4567778999999 5666666778887654 44433 233333333444442222 344555553 47
Q ss_pred cccchhHHH
Q 012218 436 GRRRYNLLL 444 (468)
Q Consensus 436 ~~~~~~~~~ 444 (468)
+..+|.+--
T Consensus 196 sL~hPay~g 204 (301)
T PF07755_consen 196 SLSHPAYSG 204 (301)
T ss_dssp -TTSTTTHH
T ss_pred cccCccccc
Confidence 777777544
No 127
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.27 E-value=1.2e+02 Score=33.10 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.9
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 012218 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (468)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~~Gf~nV~vL 385 (468)
++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999998776 567899999999995 5443
No 128
>PF05802 EspB: Enterobacterial EspB protein
Probab=22.16 E-value=5.4e+02 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=17.8
Q ss_pred cccCcceEEE-eeccCCCCCCCchHHHhhh
Q 012218 177 MTNGASFVVY-YYGTTKESLPPEIRDALNL 205 (468)
Q Consensus 177 ~~~~~~~~~~-~~G~~~~~l~p~~~~~~~~ 205 (468)
|.++.+|++. +..--..-||.+|...|.+
T Consensus 225 ~~~~t~f~~vtslaeg~ktlptt~sesvks 254 (317)
T PF05802_consen 225 ITGSTAFIAVTSLAEGTKTLPTTISESVKS 254 (317)
T ss_pred hcCCCceEeeehhhcccccCCchHHHhhcc
Confidence 5566667654 4444456788887776544
No 129
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.12 E-value=1.3e+02 Score=31.84 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.5
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCC
Q 012218 353 DRSKVIVMDADGTRSKGIARSLRKLGVM 380 (468)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~~Gf~ 380 (468)
.+.++++...+|..|..+++.+.+.|++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~ 198 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR 198 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe
Confidence 3456777778888888888888888873
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=1.2e+02 Score=30.92 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCEE
Q 012218 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (468)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~~Gf~nV~ 383 (468)
.++..+++||+.-.........|++.||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 67789999999988999999999999997643
Done!