BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012221
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/409 (46%), Positives = 267/409 (65%), Gaps = 6/409 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G ++ G +A++ L G+SG+ I RFDAS P R ++ Y+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
D K RRLD ++Y ++A + ALEDA L + +D ER + +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
+E+G +I+PFFIP I NM SA +A+ GF GP+ ++ TACAT +A I+
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
GEADL+LAGGTEAAI P+ +G F RALS RN++P+ ASRP+ RDGFVMGEGAGVLV
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E+ EHA KRGA I AE +G + DA+H+T+P +G G + + +L+DAG++PE+V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 356 INAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST GD AE+ AIK+VF + + +++TKSMIGH LGAAG +EAIATV+A+
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G + P+IN +P+P ++ D V ++ +V+ A+SNSF FGGHN+V+AF
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPEPREA-KVDYALSNSFAFGGHNAVLAF 405
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/414 (44%), Positives = 256/414 (61%), Gaps = 4/414 (0%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KKRVV+TG+G ++ GN + Y+ L++G +GI I RFDAS RFGG+++ F A +
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+D K +R+D + + A ++A+ DA L + +++ + D
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
L++KG + +PF IP I NM S L AI+LG GPN TACA + A ++
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G A M+ GGTEAAI P+ GF + RALS RNDDP ASRP+DKDRDGFVMGEG+G+L
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
++E LE A+ RGA I E +G A+ CDAYH+T P DG G + I +L+D+G+ PE V+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST A D+ E AIK+ N I +++TKSM GH LG +GG+EA+ATV AI
Sbjct: 303 YINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIA 362
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+IN NP+P + D V + + V+VA+SNSFGFGGHN +AF ++
Sbjct: 363 EDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 257/418 (61%), Gaps = 5/418 (1%)
Query: 51 EKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFS 110
E KRVVITGMG +S GNDV + L G +GI I R D + G+++ F+
Sbjct: 23 EMSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFN 82
Query: 111 AEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF 170
E +ID K RR+D +Y IVA ++A++DA L DI++ +R F
Sbjct: 83 IEDHIDKKEARRMDRFTQYAIVAAREAVKDAQL--DINENT-ADRIGVWIGSGIGGMETF 139
Query: 171 SDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAA 230
+ L++KG R+++PFF+P I +M + ++IDLG GPN + TACAT A
Sbjct: 140 EIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAF 199
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290
++RG+AD M+ GGTEA I + + GF A RALS NDD +TA RP+ + RDGFVMGEG
Sbjct: 200 KIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEG 258
Query: 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350
AG+LV+ESLE A RGA I AE +G DAYH+T P +G G S ++++++DAG+ P
Sbjct: 259 AGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEP 318
Query: 351 EEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATV 409
++V Y+NAH TST GDL E+ AIK F + +K+++TKSM GH LGA GG+EAI +
Sbjct: 319 KDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSA 378
Query: 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+I + P+I+ P+P + D V N+ Q ++ A+SNS GFGGHN+V+ F F+
Sbjct: 379 LSIKDSKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 436
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 333 bits (855), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 264/411 (64%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 133
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TAC + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 193
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 264/411 (64%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 118
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TAC + + AA I
Sbjct: 119 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 179 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 238
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 239 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 298
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 299 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 358
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 359 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 409
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 331 bits (849), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 133
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TAC + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 193
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + + +++T SM GH LGAAG +E+I ++ A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILALR 373
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 133
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TA + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIA 193
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 263/411 (63%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 133
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TA + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIA 193
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/420 (40%), Positives = 242/420 (57%), Gaps = 6/420 (1%)
Query: 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
P+ RVV+TG G+ S GN + ++N L G+ GI I +FD S F +I+
Sbjct: 15 PRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQ 74
Query: 108 GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXX 167
F + Y K+ R D+ Y + A ++A+ A+L + ++++R
Sbjct: 75 DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGI 131
Query: 168 XXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFY 227
D V L EKG +++ P +P A+ NM S +A+ G G SI+TAC++SN
Sbjct: 132 KEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 191
Query: 228 AAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287
A I+ G D+ML GGTEA+I P + GF A ALS +DP AS P+DKDR+GFVM
Sbjct: 192 DAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVM 250
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEG+G+LV+ESLEHA KRGA I+AE +G CDAYHMT P +G G I+ +LE+A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
+SPE+V Y+NAH TST A + E AI V + +++TKS GH LGAAG +EAI
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIV 368
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
T++A+ ++ + +E + V + + E+ AISN+FGFGGHN+V+AF ++
Sbjct: 369 TIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 428
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 291 bits (744), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 169/416 (40%), Positives = 240/416 (57%), Gaps = 6/416 (1%)
Query: 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
P+ RVV+TG G+ S GN ++N L G+ GI I +FD S F +I+
Sbjct: 15 PRGSHMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQ 74
Query: 108 GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXX 167
F + Y K+ R D+ Y + A ++A+ A+L D++ ++++R
Sbjct: 75 DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVAA-LNRDRFGVIVASGIGGI 131
Query: 168 XXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFY 227
D V L EKG +++ P +P A+ NM S +A+ G G SI+TAC++SN
Sbjct: 132 KEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 191
Query: 228 AAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287
A I+ G D+ML GGTEA+I P + GF A ALS +DP AS P+DKDR+GFVM
Sbjct: 192 DAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVM 250
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEG+G+LV+ESLEHA KRGA I+AE +G CDAYHMT P +G G I+ +LE+A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
+SPE+V Y+NAH TST A + E AI V + +++TKS GH LGAAG +EAI
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKA--VPVSSTKSFTGHLLGAAGAVEAIV 368
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
T++A+ ++ + +E + V + E+ AISN+FGFGGHN+V+AF
Sbjct: 369 TIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLAKEIPYAISNTFGFGGHNAVLAF 424
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 291 bits (744), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 170/420 (40%), Positives = 250/420 (59%), Gaps = 12/420 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-------G 108
+RVVITG+GLVS + V+ + +LL GESG + F+ + +I
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXX 168
F+ + ++D K R++D + Y + A +AL+DA G D+ R
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDA--GWHPENDEDQVRTGVLIGSGIGGIE 127
Query: 169 XFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
+ L +KG R+I+PFFIP + N+ S ++I GPN+S+ TACAT +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALS-QRNDDPQTASRPWDKDRDGFVM 287
AA I G+AD+M+AGGTE+ + I L GF AC+ALS +RNDDP ASRP+D+DRDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEGAG++V+E LEHA+ RGA I AE +G ++ DA+H+T P G G C+ ++L+ AG
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG-IKINATKSMIGHCLGAAGGLEAI 406
+ P+E++YINAH TST+A D E+ A+++V I +++TKS IGH LGAAG EA+
Sbjct: 308 IVPDEIDYINAHGTSTMA-DTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 407 ATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
+ AI ++N NP D V +K ++ +++VA+SNSFGFGG N+ + +
Sbjct: 367 FSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRERKIDVALSNSFGFGGTNASLVLRRY 426
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 239/410 (58%), Gaps = 5/410 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G V+ GND + + G +G+ R + FP + +++ F E Y
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
++ K R+ D Y I + + A++D+ L D S + R F
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGLVIDDS---NANRVGVWIGSGIGGXETFETQY 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ + +GHR+++PFF+P I + GS ++I G G N + TACAT+ A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
RG+AD + GG EA I L GF A +ALS N DP+TA RP+DKDRDGF++GEGAG++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
++E EHA RGA I AE +G DAYH+T P +G G + + +++DAG++P++V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVD 298
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST D E AIK VF ++ + I++TKS GH LGA+GG+EAI + I
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIR 358
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+I+ N + + D V N+ ++ VNV ISNSFGFGGHN+ + F
Sbjct: 359 DNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVF 408
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 241/420 (57%), Gaps = 6/420 (1%)
Query: 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
P+ RVV+TG G+ S GN + ++N L G+ GI I +FD S F +I+
Sbjct: 16 PRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQ 75
Query: 108 GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXX 167
F + Y K+ R D+ Y + A ++A+ A+L + ++++R
Sbjct: 76 DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGI 132
Query: 168 XXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFY 227
D V L EKG +++ P +P A+ NM S +A+ G G SI+TAC++SN
Sbjct: 133 KEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 192
Query: 228 AAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287
A I+ G D+ML GGTEA+I P + GF A ALS +DP AS P+DKDR+GFVM
Sbjct: 193 DAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVM 251
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEG+G+LV+ESLEHA KRGA I+AE +G CDAYHMT P +G G I+ +LE+A
Sbjct: 252 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 311
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
+SPE+V Y+NA TST A + E AI V + +++TKS GH LGAAG +EAI
Sbjct: 312 ISPEQVAYVNAAGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIV 369
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
T++A+ ++ + +E + V + + E+ AISN+FGFGGHN+V+AF ++
Sbjct: 370 TIEAMRHNFVPMTAGTSEVSDYIEANVVYAQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 429
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 250/422 (59%), Gaps = 16/422 (3%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-------G 108
+RVVITG+GLVS DV+ + +LL+G+SG+ I FD S + +I
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXX 168
++A+ +++ K R++D + Y I A +AL DA+ K D+++
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALADAEW----FPKSDEDQICTGVLIGSGIGG 121
Query: 169 XFSDGVQ--ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCF 226
L +KG R+I+PFFIP + N+ S ++I G GPN+S+ TAC+T +
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAI 181
Query: 227 YAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQ-RNDDPQTASRPWDKDRDGF 285
AA I G+AD+MLAGGTE+ I I L GF ACRALS RNDDP+ ASRP+D DRDGF
Sbjct: 182 GDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGF 241
Query: 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED 345
VMGEGA ++V+E LEHA KRGA I AE +G ++ DAYH+T P G G + ++L+
Sbjct: 242 VMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKR 301
Query: 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLE 404
A V+ E++YINAH TST+A D+ E+ A+++V + +++TKS IGH LGAAG E
Sbjct: 302 AQVNVSELDYINAHGTSTMA-DVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAE 360
Query: 405 AIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
AI V AI ++N NP + D V +K ++ +++ +SNSFGFGG N+ +
Sbjct: 361 AIFCVLAIRDNIAPATLNLENPSIETKIDLVPHKPRERKIDTVLSNSFGFGGTNASLVMR 420
Query: 465 AF 466
F
Sbjct: 421 RF 422
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 26/434 (5%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGI---TMID----RFDA-SKFPT--RFGGQ 105
+RVV+TG+G+V+ G V+ + +L+DGE GI T+ D FD +K T + +
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 106 IRGFSAEGYIDGK-------NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXX 158
+ F G G+ N + + + + Y + A +AL DA+ +++ +KER
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 159 XXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTA 218
+ Q + EK R+++PFFIP + NM S +++ GF GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 219 CATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRP 277
CAT + A I+ G+AD+M+AGGTE++I + + GF RALS + N PQ ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 278 WDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSS 337
+D DRDGFV+GEG+GV+V+E EHA +RGA I AE G ++ DA+H+T P DG G
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVL 298
Query: 338 CIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN--TTG-IKINATKSMIG 394
+ +L +G+ P +++Y+NAHATST GD E AIK VF T+G + ++TK G
Sbjct: 299 AMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATG 358
Query: 395 HCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE--FDTVANKKQQHEVNVAISNSF 452
H LGAAG +EAI ++ AI G ++N NP+P + F + K+ V A+SNSF
Sbjct: 359 HLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKML-VRTAMSNSF 417
Query: 453 GFGGHNSVVAFSAF 466
GFGG N+ + F++
Sbjct: 418 GFGGTNASLLFASI 431
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/420 (38%), Positives = 241/420 (57%), Gaps = 12/420 (2%)
Query: 57 RVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR--------G 108
RVV+TG+G+VS G + + +L+ G SG+ + A + + GG ++ G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXX 168
F E + K R++D ++ +VA +AL +A + ++ +ER
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQ--RERTATVVASGIGGFP 142
Query: 169 XFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
++ V+ +G R+++PF IP+ ++N+ + ++I F GP TACA S
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGD 202
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVM 287
A IR GEAD++LAGG EAA + LGGF A RALS +++P ASRP+D+DRDGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEGA ++V+ESL+HA+ RGA IAE +G DAYHMT DG G ++ +L
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
V+PE+V+Y+NAHATST GD EI A+K VF G I++TKS GH LGAAG +EA
Sbjct: 323 VAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAF 382
Query: 408 TVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
++ A+ G L ++N +P+P+ + D + + V +A+SN FGFGG N+ V F +
Sbjct: 383 SILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRRY 442
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/420 (38%), Positives = 240/420 (57%), Gaps = 12/420 (2%)
Query: 57 RVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR--------G 108
RVV+TG+G+VS G + + +L+ G SG+ + A + + GG ++ G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXX 168
F E + K R++D ++ +VA +AL +A + ++ +ER
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQ--RERTATVVASGIGGFP 142
Query: 169 XFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
++ V+ +G R+++PF IP+ ++N+ + ++I F GP TA A S
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGD 202
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVM 287
A IR GEAD++LAGG EAA + LGGF A RALS +++P ASRP+D+DRDGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEGA ++V+ESL+HA+ RGA IAE +G DAYHMT DG G ++ +L
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
V+PE+V+Y+NAHATST GD EI A+K VF G I++TKS GH LGAAG +EA
Sbjct: 323 VAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAF 382
Query: 408 TVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
++ A+ G L ++N +P+P+ + D + + V +A+SN FGFGG N+ V F +
Sbjct: 383 SILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRRY 442
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 233/421 (55%), Gaps = 13/421 (3%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQI-RG-----F 109
+RVVITG+GLV+ G +++L+ GESGI + + P + RG F
Sbjct: 21 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQF 80
Query: 110 SAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXX 169
+ + ++ + + + I A + A++D+ G + D+
Sbjct: 81 NEQNFVSKSDIKSMSSPTIMAIGAAELAMKDS--GWHPQSEADQVATGVAIGMGMIPLEV 138
Query: 170 FSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAA 229
S+ KG+ K++PFF+P + NM + ++I GPN+++STAC T + +
Sbjct: 139 VSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDS 198
Query: 230 ANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289
I G+AD+M+AGGT++ I P+ L GF RALS N DP+ A RP+ RDGFVMGE
Sbjct: 199 FRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGE 257
Query: 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349
GA VLV+E EHA++R A I AE LG ++ DA H+T P +G G C+ ++L+DAGV
Sbjct: 258 GAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQ 317
Query: 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIAT 408
PEE++YINAHATST GD AE AIK +FK+ + +++TK GH LGAAG +EA T
Sbjct: 318 PEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFT 377
Query: 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVN---VAISNSFGFGGHNSVVAFSA 465
A L P++N EP + + V K Q+ + + ++NSFGFGG N+ + +
Sbjct: 378 TLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIAG 437
Query: 466 F 466
Sbjct: 438 L 438
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 232/421 (55%), Gaps = 13/421 (3%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQI-RG-----F 109
+RVVITG+GLV+ G +++L+ GESGI + + P + RG F
Sbjct: 27 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQF 86
Query: 110 SAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXX 169
+ + ++ + + + I A + A++D+ G + D+
Sbjct: 87 NEQNFVSKSDIKSMSSPTIMAIGAAELAMKDS--GWHPQSEADQVATGVAIGMGMIPLEV 144
Query: 170 FSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAA 229
S+ KG+ K++PFF+P + NM + ++I GPN+++STA T + +
Sbjct: 145 VSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDS 204
Query: 230 ANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289
I G+AD+M+AGGT++ I P+ L GF RALS N DP+ A RP+ RDGFVMGE
Sbjct: 205 FRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGE 263
Query: 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349
GA VLV+E EHA++R A I AE LG ++ DA H+T P +G G C+ ++L+DAGV
Sbjct: 264 GAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQ 323
Query: 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIAT 408
PEE++YINAHATST GD AE AIK +FK+ + +++TK GH LGAAG +EA T
Sbjct: 324 PEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFT 383
Query: 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVN---VAISNSFGFGGHNSVVAFSA 465
A L P++N EP + + V K Q+ + + ++NSFGFGG N+ + +
Sbjct: 384 TLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIAG 443
Query: 466 F 466
Sbjct: 444 L 444
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 212/397 (53%), Gaps = 10/397 (2%)
Query: 72 DVDAYYNKLLDGESGITMIDRFDASKF--PTRFGGQIRGFSAEGYIDGKNDRRLDDCLRY 129
D+++ + LL GESGI ++ +K+ + GG ++ + ++ + RR+ R
Sbjct: 28 DIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRM 86
Query: 130 CIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFF 189
+ G + E A S ++D +R + + G RK++P
Sbjct: 87 GKLLGGQLWESAG-----SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLA 141
Query: 190 IPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAA 249
+ + N +A++ + LG + +AC++ + A I G+AD+ + GG E
Sbjct: 142 VQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGP 201
Query: 250 IIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPI 309
I + + F RA+S RND+P+ ASRP+DKDRDGFV GE ++++E+ EHA RGA
Sbjct: 202 IEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKP 261
Query: 310 IAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLA 369
+A LG + DA+HM P ADG+ + SLE AG+SP +++++NAH T+T GD A
Sbjct: 262 LARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAA 321
Query: 370 EINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429
E NAI+ + A KS +GH +GA G LE++ TV + G + P++N P+P
Sbjct: 322 EANAIR--VAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE 379
Query: 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
++ D VA + + + A++NSFGFGGHN +AF +
Sbjct: 380 IDLDVVAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 211/397 (53%), Gaps = 10/397 (2%)
Query: 72 DVDAYYNKLLDGESGITMIDRFDASKF--PTRFGGQIRGFSAEGYIDGKNDRRLDDCLRY 129
D+++ + LL GESGI ++ +K+ + GG ++ + ++ + RR+ R
Sbjct: 28 DIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRM 86
Query: 130 CIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFF 189
+ G + E A S ++D +R + + G RK++P
Sbjct: 87 GKLLGGQLWESAG-----SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLA 141
Query: 190 IPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAA 249
+ + N +A++ + LG + +A ++ + A I G+AD+ + GG E
Sbjct: 142 VQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGP 201
Query: 250 IIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPI 309
I + + F RA+S RND+P+ ASRP+DKDRDGFV GE ++++E+ EHA RGA
Sbjct: 202 IEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKP 261
Query: 310 IAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLA 369
+A LG + DA+HM P ADG+ + SLE AG+SP +++++NAH T+T GD A
Sbjct: 262 LARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAA 321
Query: 370 EINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429
E NAI+ + A KS +GH +GA G LE++ TV + G + P++N P+P
Sbjct: 322 EANAIR--VAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE 379
Query: 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
++ D VA + + + A++NSFGFGGHN +AF +
Sbjct: 380 IDLDVVAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 215/415 (51%), Gaps = 13/415 (3%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TGMG+VS G++ + L + +SGI+ + + F + G E +
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 81
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
D + R + +A +A+ DA L +++ ER D
Sbjct: 82 DRRAMRFHGRGTAWNHIAMDQAIADAGL---TEEEVSNERTGIIMGSGGPSTRTIVDSAD 138
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
EKG +++ PF +P A+++ SA LA G NYSIS+ACATSN+C A I+
Sbjct: 139 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 198
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+ D M AGG E + + F A A+S + ND P TASR +DK+RDGFV+ GAGVL
Sbjct: 199 GKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 257
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LE A+ RGA I E +G D Y M P G G C++ +L +++
Sbjct: 258 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKID 312
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YIN HATST AGD EI AI+++F I ATKS+ GH LGA G EAI ++ +
Sbjct: 313 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQ 372
Query: 414 TGWLHPSINQFNPEPS-VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
++ S + +P+ + V + ++N +SNSFGFGG N+ + F ++
Sbjct: 373 NNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 427
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 208/417 (49%), Gaps = 20/417 (4%)
Query: 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKF--PTRFGGQI-RGFSAEGY 114
VV+TG+ + + D + + LLD +SGI +D +F P R GG + F +
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQ-- 87
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+ RR+ R V ++ E+A S ++D R
Sbjct: 88 LTRIELRRMGYLQRMSTVLSRRLWENAG-----SPEVDTNRLMVSIGTGLGSAEELVFSY 142
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAID----LGFMGPNYSISTACATSNYCFYAAA 230
+ +G + ++P + + N +A + ++ G M P +ACA+ A
Sbjct: 143 DDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTP----VSACASGAEAIARAW 198
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGE 289
I GEAD + GG E I + + GF R +S NDDP A RP+D+DRDGFV GE
Sbjct: 199 QQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGE 258
Query: 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349
G +L++E+ EHA RGA I+A +G ++ D +HM P +G I +++ AG++
Sbjct: 259 GGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLA 318
Query: 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATV 409
P +++++NAHAT T GDLAE AI + A KS +GH +GA G +E+I TV
Sbjct: 319 PGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP-AVYAPKSALGHSVGAVGAVESILTV 377
Query: 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
A+ + P++N N +P ++ D VA + + AI+NSFGFGGHN +AF +
Sbjct: 378 LALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 215/415 (51%), Gaps = 13/415 (3%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TGMG+VS G++ + L + +SGI+ + + F + G E +
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
D + R + +A +A+ DA L +++ ER D
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGL---TEEEVSNERTGIIMGSGGPSTRTIVDSAD 121
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
EKG +++ PF +P A+++ SA LA G NYSIS+ACATSN+C A I+
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+ D M AGG E + + F A A+S + ND P TASR +DK+RDGFV+ GAGVL
Sbjct: 182 GKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 240
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LE A+ RGA I E +G D Y M P G G C++ +L +++
Sbjct: 241 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKID 295
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YIN HATST AGD EI AI+++F I ATKS+ GH LGA G EAI ++ +
Sbjct: 296 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQ 355
Query: 414 TGWLHPSINQFNPEPS-VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
++ S + +P+ + V + ++N +SNSFGFGG N+ + F ++
Sbjct: 356 NNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 410
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 214/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 120
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 121 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 213/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 120
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 121 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 213/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 132
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 133 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+AT +M GH LGAAG EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATAAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 213/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 120
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 121 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+AT++M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATRAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 132
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 133 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+ TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 305 DYLNSQGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 132
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 133 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+ TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 305 DYLNSEGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 194 bits (494), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 203/418 (48%), Gaps = 14/418 (3%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFS--AE 112
K+RVVITG+G+ + GN ++ L G + I FD S + ++ + F AE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAE 60
Query: 113 GYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSD 172
G+ + DR +D ++ + ++A + L D +D R
Sbjct: 61 GFGPRELDR-MDRASQFAVACAREAFAASGLDPD---TLDPARVGVSLGSAVAAATSLER 116
Query: 173 GVQALIEKGH------RKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCF 226
L + G ++ Y + ++ A +A +G GP +ST C +
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 227 YAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFV 286
A I G AD+M AG + I PI + F A RA + RNDDP+ ASRP+D RDGFV
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDA 346
+ EGA + V+E + A+ RGA I AE G A C+AYHMT +ADG ++ I +L+++
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDES 296
Query: 347 GVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEA 405
+++YINAH + T D E A K+ ++ +++ KSM+GH LGA G LE
Sbjct: 297 RTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEI 356
Query: 406 IATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
A V A+ G + P+ N +P + D V + ++ ++ ++ GFGG S +
Sbjct: 357 AACVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRSVLTVGSGFGGFQSAMVL 414
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 205/414 (49%), Gaps = 11/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSA-EGY 114
KR VITG+G+VS GN+ L +G SGIT F + + G ++ S +
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
ID K R D Y +A ++A+ D+ L SD
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVAGSDAX 124
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A + SA LA G NYSIS+ACATS +C A I+
Sbjct: 125 RT--PRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQ 182
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E F A ALS + ND P ASR +D+DRDGFV+ G G
Sbjct: 183 LGKQDIVFAGGGEELCWEXACE-FDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGX 241
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D P G G C + + AGV +
Sbjct: 242 VVVEELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAVRCXQXAX--AGVDT-PI 296
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y N H TST GD+ E+ AI++VF N T I++TK+ GH LGAAG EAI ++ +
Sbjct: 297 DYXNVHGTSTPVGDVKELGAIREVFGNNT-PAISSTKAXTGHSLGAAGVHEAIFSLLXVE 355
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN N + + + + Q E+ SNSFGFGG N+ + ++
Sbjct: 356 HGFIAPSINIDNLDEQAQGXNIITETTQRELTTVXSNSFGFGGTNATLVXRKYQ 409
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 213/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 132
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+A ATS +C A I+
Sbjct: 133 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 190
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 213/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 120
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+A ATS +C A I+
Sbjct: 121 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 212/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF-SDGV 174
D K R + D Y ++ ++A+ DA L + + + F +D +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM 120
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ +G + + P+ + A+ + SA LA G NYSIS+A ATS +C A I+
Sbjct: 121 RG--PRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 191/411 (46%), Gaps = 11/411 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDA-SKFPTRFGGQIRGFSAEGY 114
KRVVITGMG V+ G+ D L G + + + +D TR + GF+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
K R + Y + A + AL DA D + I R
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIR-AF 122
Query: 175 QALIEKGHRK-ITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHI 233
++E G +T + + + +++ G S+ACA+ + A +I
Sbjct: 123 GTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENI 182
Query: 234 RRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ LMLAGG E P + F A S RND+P RP+D RDG V+GEGA
Sbjct: 183 AMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAAT 241
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
LV+E EHA RGA I AE +G N D HMT P A + + ++ +LEDA + +
Sbjct: 242 LVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTM--ARAMQLALEDAKLDANAI 299
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST GD+AE A + F + I++ KS +GH LGA G LEA T++ +
Sbjct: 300 AYVNAHGTSTDRGDVAESQATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEMMK 357
Query: 414 TGWLHPSINQFNPEPS-VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
W P++N +P+ D + + + + +SN+F FGG N+ + F
Sbjct: 358 RNWYAPTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNNFAFGGINTSLIF 408
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 180/421 (42%), Gaps = 14/421 (3%)
Query: 51 EKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFS 110
+ D K V+ITG+G+V+ G + Y++ +LDG G+ + RFD S++P GQI F
Sbjct: 4 KDDDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFH 63
Query: 111 AEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF 170
A +I G+ + D R + A AL+DA AD D +
Sbjct: 64 APDHIPGRLLPQTDPSTRLALTAADWALQDAK--ADPESLTDYDMGVVTANACGGFDFTH 121
Query: 171 SDGVQALIEKGHRKITPF--FIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
+ + L +G + ++ + F + N G ++I G GP+ ++ A
Sbjct: 122 RE-FRKLWSEGPKSVSVYESFAWFYAVNTGQ--ISIRHGMRGPSSALVAEQAGGLDALGH 178
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288
A IRRG L+++GG ++A+ P G +A +S DP A P+D+ G+V G
Sbjct: 179 ARRTIRRGTP-LVVSGGVDSALDPWGWVSQIASGRISTAT-DPDRAYLPFDERAAGYVPG 236
Query: 289 EGAGVLVMESLEHAMKRGA-PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
EG +LV+E A RG E G A D + A G+ I +L DAG
Sbjct: 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAG 293
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
PE+V+ + A D AE AI +VF G+ + K+ G G L+ +
Sbjct: 294 TGPEDVDVVFADGAGVPELDAAEARAIGRVFGR-EGVPVTVPKTTTGRLYSGGGPLDVVT 352
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ ++ G + P+ + D V + + A+ + G G NS F
Sbjct: 353 ALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALVLARGRWGFNSAAVLRRFA 412
Query: 468 P 468
P
Sbjct: 413 P 413
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 131/281 (46%), Gaps = 21/281 (7%)
Query: 195 TNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIG 254
+++ S +A LG GP ++ TAC++ + A +RR E L LAGG P
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP-- 232
Query: 255 LGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYL 314
G F R SQ +P+ K DGF + EGAGVLV++ L A + G P++A
Sbjct: 233 -GAFTEFR--SQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 315 GGAVNCDAYH--MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372
G AVN D +T P G I +LE+AGV +V+Y+ AH T T GD E++
Sbjct: 290 GSAVNQDGASNGLTAP--SGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVH 347
Query: 373 AIKKVFKNTTG----IKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428
A+ + + I + KS IGH AAG V A+ G +++ P P
Sbjct: 348 ALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSP 407
Query: 429 SVEFD----TVANKKQQ----HEVNVAISNSFGFGGHNSVV 461
+E+D +V ++ + A +SFG G N+ V
Sbjct: 408 QIEWDLGAVSVVSQARSWPAGERPRRAGVSSFGISGTNAHV 448
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 21/286 (7%)
Query: 192 YAITNMGSAL----LAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
Y++T + A+ ++ +G GP+ S+ TAC++S + A +R+GE+ + + GG
Sbjct: 146 YSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAA 205
Query: 248 AAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
P F RAL+ S+ + DGF EG ++++E L A + G
Sbjct: 206 VMATPGVFVDFSRQRALAADGR-----SKAFGAGADGFGFSEGVTLVLLERLSEARRNGH 260
Query: 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367
++A G A+N D G I +LE G+ P +V+ + AH T T GD
Sbjct: 261 EVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGD 320
Query: 368 LAEINAIKKVFKNTTG----IKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQ 423
E NA+ + + + + KS IGH AAG + V A+ G L +++
Sbjct: 321 PIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHV 380
Query: 424 FNPEPSVEFDT------VANK--KQQHEVNVAISNSFGFGGHNSVV 461
P P V++ + N+ ++ A ++FG G N+ V
Sbjct: 381 EEPTPHVDWSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHV 426
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 123/286 (43%), Gaps = 29/286 (10%)
Query: 189 FIPYAITNMGSALLAIDLGFM----GPNYSISTACATSNYCFYAAANHIRRGEADLMLAG 244
+ Y++ A++A L F GP+ ++ TAC++S A I G+ + G
Sbjct: 129 LVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVG 188
Query: 245 GTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMK 304
G + P F+ LS P+ + +D +G+ EG V V+ + + +
Sbjct: 189 GINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSEGV-VAVLLTKKSLAR 242
Query: 305 RGAPIIAEYLGGAVNCDAYH---MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361
R + A L N D + +T P D I S + AGV+PE YI AH T
Sbjct: 243 R---VYATILNAGTNTDGFKEQGVTFPSGDI--QEQLIRSLYQSAGVAPESFEYIEAHGT 297
Query: 362 STLAGDLAEINAIKKVFKNTTG--IKINATKSMIGHCLGAAGGLEAIATV-KAITTGWLH 418
T GD E+N I + T + I +TKS +GH A GL A+A V ++ G
Sbjct: 298 GTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHP-EPASGLAALAKVLLSLEHGLWA 356
Query: 419 PSINQFNPEPSV------EFDTVANKKQQHEVNVAISNSFGFGGHN 458
P+++ +P P + V NV I NSFGFGG N
Sbjct: 357 PNLHFHSPNPEIPALLDGRLQVVDQPLPVRGGNVGI-NSFGFGGSN 401
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 117/285 (41%), Gaps = 27/285 (9%)
Query: 189 FIPYAITNMGSALLAIDLGFM----GPNYSISTACATSNYCFYAAANHIRRGEADLMLAG 244
+ Y++ A++A L F GP+ +I TAC++S +A IR GE + G
Sbjct: 127 LVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVG 186
Query: 245 GTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMK 304
G + P F+ LSQ R +D + G+ E A V V+ + + +
Sbjct: 187 GLNVLLKPNSSLQFMKLGMLSQDG-----TCRSFDAEGTGYCRAE-AVVAVLLTKKSLAR 240
Query: 305 RGAPIIAEYLGGAVNCDAYH---MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361
R + A L N D +T P D I S AG PE + YI AH T
Sbjct: 241 R---VYATILNAGTNTDGSKEQGVTFPSGD--VQEQLIRSLYAPAGPDPESLEYIEAHGT 295
Query: 362 STLAGDLAEINAIKKVFKNT--TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHP 419
T GD E+N I T + I +TKS +GH A+G I + ++ G P
Sbjct: 296 GTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAP 355
Query: 420 SINQFNPEPSV------EFDTVANKKQQHEVNVAISNSFGFGGHN 458
+++ P P + V NV I NSFGFGG N
Sbjct: 356 NLHYHTPNPEIPALQDGRLQVVDRPLPIRGGNVGI-NSFGFGGSN 399
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 26/271 (9%)
Query: 218 ACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP--IGLGGFVAC---RALSQRNDDPQ 272
ACAT+ + I+ G+ADL++AGG + + IG G A + +
Sbjct: 2739 ACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDS 2798
Query: 273 TASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADG 332
SR D+ R GF+ +G G +++ + A+K G P++A D H + P A G
Sbjct: 2799 KFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIP-APG 2857
Query: 333 LGV--------SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT--- 381
LG S + SL GV +++ I+ H TSTLA D E +++ +
Sbjct: 2858 LGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRA 2917
Query: 382 --TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHP--SINQFNPEPS-----VEF 432
+ I + K++ GH G A + + + + G + P S++ + E + V
Sbjct: 2918 PGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSGHFVWV 2977
Query: 433 DTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ + + + + S GFG + +VA
Sbjct: 2978 REPLDLRGKFPLKAGLVTSLGFGHVSGLVAL 3008
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 194 ITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGG-----TEA 248
+ M + + + L GP + ACAT+ + I +G+A + L GG E
Sbjct: 1255 VNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEG 1314
Query: 249 AIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAP 308
+ +G + R +P SRP R+GF+ +G GV V+ + + A++ G P
Sbjct: 1315 SYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVP 1374
Query: 309 I 309
I
Sbjct: 1375 I 1375
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 339 IESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINAT-----KSMI 393
+ +L G++ +++ + H TST+A D E + I + K+ K NA K +
Sbjct: 1503 LRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLT 1562
Query: 394 GHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHE---VNVAIS 449
GH GAAG ++ + TG + + N N + +E FD + + + +
Sbjct: 1563 GHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSV 1622
Query: 450 NSFGFG 455
SFGFG
Sbjct: 1623 TSFGFG 1628
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 194 ITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI 253
I M + + + + GP + ACATS I G+A + + GG +
Sbjct: 1280 INTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEE 1338
Query: 254 GLGGFVACRALSQRNDD------PQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
G F +A S ++ P SRP R+GF+ +GAG+ ++ + A+K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 308 PI 309
PI
Sbjct: 1399 PI 1400
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 194 ITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI 253
I M + + + + GP + ACATS I G+A + + GG +
Sbjct: 1280 INTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEE 1338
Query: 254 GLGGFVACRALSQRNDD------PQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
G F +A S ++ P SRP R+GF+ +GAG+ ++ + A+K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 308 PI 309
PI
Sbjct: 1399 PI 1400
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 194 ITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI 253
I M + + + + GP + ACATS I G+A + + GG +
Sbjct: 1081 INTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEE 1139
Query: 254 GLGGFVACRALSQRNDD------PQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
G F +A S ++ P SRP R+GF+ +GAG+ ++ + A+K G
Sbjct: 1140 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1199
Query: 308 PI 309
PI
Sbjct: 1200 PI 1201
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 70/179 (39%), Gaps = 34/179 (18%)
Query: 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQ 272
+ IS AC+ Y A + I+ G+A +L G E LS+ D
Sbjct: 105 FDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEK---------------LSEAVD--- 146
Query: 273 TASRPWDKDRDGFVMGEGAGVLVMESLEH-----AMKRGAPIIAEYLGGAVNCDAYHMTD 327
W+ + G+GAG +V+ E A + A E L A NC M
Sbjct: 147 -----WEDRSTCVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADNCGYIRMKG 201
Query: 328 PRADGLGVSSCIE---SSLEDAGVSPEEVNYINAH-ATSTLAGDLAEINAI--KKVFKN 380
+ V S E LE AGV PEEV+ + H A + LAE I +KVF N
Sbjct: 202 RELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVN 260
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 211 PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
P+Y+++ C + AA I GE D+++AGGTE
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTE 119
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348
+GAG +++ AM++G P++ G A DP G+G + I ++++ AG+
Sbjct: 259 DGAGAVLLMKRSVAMQKGLPVL-----GVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGL 313
Query: 349 SPEEVNYINAHATSTLAGDLAEIN---AIKKVF-KNTTG-----IKINATKSMIGHCLGA 399
+++ DL EIN A + V+ +N G I +N IGH LGA
Sbjct: 314 ELDDI-------------DLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGA 360
Query: 400 AG 401
G
Sbjct: 361 TG 362
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348
+GAG +++ AM++G P++ G A DP G+G + I ++++ AG+
Sbjct: 276 DGAGAVLLMKRSVAMQKGLPVL-----GVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGL 330
Query: 349 SPEEVNYINAHATSTLAGDLAEIN---AIKKVF-KNTTG-----IKINATKSMIGHCLGA 399
+++ DL EIN A + V+ +N G I +N IGH LGA
Sbjct: 331 ELDDI-------------DLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGA 377
Query: 400 AG 401
G
Sbjct: 378 TG 379
>pdb|2AZN|A Chain A, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|B Chain B, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|C Chain C, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|D Chain D, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|E Chain E, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|F Chain F, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
Length = 219
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 12 SPLNPLR--SKSNFNLPNNARPTARRVSFITASSTKSAPKREK------DPKKRVVITGM 63
S NP+R S +P NAR + I A++ + ++EK D VV G
Sbjct: 67 SDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDXGVEVVKCGR 126
Query: 64 GLVSVFGNDVDAYYNK-----LLDGESGIT-------MIDRFDASKFPTRFGGQIRGFSA 111
G V D Y+K LL+G + ++D P FGG+ A
Sbjct: 127 GKVD-LKKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGK----EA 181
Query: 112 EGYIDGKNDRRLDDCLR 128
Y+DG+ + +D+C++
Sbjct: 182 PTYVDGEGFKTVDECVK 198
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDA 346
+ +G+ VLV+ S E A ++G +A +G +V DP+ G+G + I LE
Sbjct: 251 LNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAG-----VDPKIMGIGPAPAIRKGLEKV 305
Query: 347 GVSPEEVNYI---NAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 401
S E+ + + A A LA + K++ + + +N + +GH +G G
Sbjct: 306 DWSLEDADLLEINEAFAAQYLAVE-------KELDLDREKVNVNGSGVGLGHPIGCTG 356
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 182 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLM 241
H TP P ++G+ G +G + +S CA Y AAA+ IR G A M
Sbjct: 113 HFLQTPPAAPMVAASLGAK------GILG--FDLSAGCAGFGYALGAAADMIRGGGAATM 164
Query: 242 LAGGTE 247
L GTE
Sbjct: 165 LVVGTE 170
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 182 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLM 241
H TP P ++G+ G +G + +S CA Y AAA+ IR G A M
Sbjct: 114 HFLQTPPAAPMVAASLGAK------GILG--FDLSAGCAGFGYALGAAADMIRGGGAATM 165
Query: 242 LAGGTE 247
L GTE
Sbjct: 166 LVVGTE 171
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 182 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLM 241
H TP P ++G+ G +G + +S CA Y AAA+ IR G A M
Sbjct: 114 HFLQTPPAAPMVAASLGAK------GILG--FDLSAGCAGFGYALGAAADMIRGGGAATM 165
Query: 242 LAGGTE 247
L GTE
Sbjct: 166 LVVGTE 171
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 182 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLM 241
H TP P ++G+ G +G + +S CA Y AAA+ IR G A M
Sbjct: 93 HFLQTPPAAPMVAASLGAK------GILG--FDLSAGCAGFGYALGAAADMIRGGGAATM 144
Query: 242 LAGGTE 247
L GTE
Sbjct: 145 LVVGTE 150
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 182 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLM 241
H TP P ++G+ G +G + +S CA Y AAA+ IR G A M
Sbjct: 93 HFLQTPPAAPMVAASLGAK------GILG--FDLSAGCAGFGYALGAAADMIRGGGAATM 144
Query: 242 LAGGTE 247
L GTE
Sbjct: 145 LVVGTE 150
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDA 346
+ +GAG +++ A+++G PI+ G A P G+G + I ++++ A
Sbjct: 277 VSDGAGAVLLMKRSIALQKGLPIL-----GVFRTFAAVGVPPSIMGIGPAVAIPAAVKAA 331
Query: 347 GVSPEEVNY--INAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 401
G+ ++++ IN S + KK+ + I +N IGH LGA G
Sbjct: 332 GLQIDDIDLFEINEAFASQF------VYCQKKLEIDPQKINVNGGAMAIGHPLGATG 382
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 25/113 (22%)
Query: 185 ITPFFIPYAITNMGSALLAIDLGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLA 243
++ P+A T +AL+A ++G P Y +S ACA YC+ A +AD ++
Sbjct: 89 VSTVTFPHA-TPSAAALVAHEIGATPAPAYDVSAACA--GYCYGVA-------QADALVR 138
Query: 244 GGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVM 296
GT ++ +G+ LS D P D+ F++G+GAG +++
Sbjct: 139 SGTARHVLVVGV------ERLSDVVD-------PTDRSIS-FLLGDGAGAVIV 177
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 199 SALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA-AIIPIGLGG 257
+A+LA L ++ CA+ AA +R G DL+LAGG E+ + +P+G
Sbjct: 76 TAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMG--- 132
Query: 258 FVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLE 300
+D A+ P R GFV +G G ++ +LE
Sbjct: 133 ----------SDGGAWATDPETNYRIGFVP-QGIGADLIATLE 164
>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|B Chain B, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|C Chain C, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|D Chain D, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
Length = 515
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 49 KREKDPKKRVVITGMGLVS-VFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
K E++ ++ T GL + VF D++ + L+ E+G+ ++ + PT FGG
Sbjct: 421 KDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGG--- 477
Query: 108 GFSAEGYIDGKNDRR 122
+ G DRR
Sbjct: 478 -------VKGSGDRR 485
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 200 ALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248
A+L L P +I+ CA+ A+ + G D+M+AGG E+
Sbjct: 75 AVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMES 123
>pdb|2VYC|A Chain A, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|B Chain B, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|C Chain C, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|D Chain D, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|E Chain E, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|F Chain F, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|G Chain G, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|H Chain H, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|I Chain I, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|J Chain J, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
Length = 755
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 203 AIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP----IGLGGF 258
++ +G G N +I AC T N N + E LML G ++P G+ G
Sbjct: 225 SVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGP 284
Query: 259 VACRALSQRNDDPQTASRPWDKDRDG 284
+ + + + + P KD+ G
Sbjct: 285 IYPQEMQPETLQKKISESPLTKDKAG 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,349,521
Number of Sequences: 62578
Number of extensions: 548525
Number of successful extensions: 1686
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 93
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)