Query 012222
Match_columns 468
No_of_seqs 472 out of 2422
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 2E-44 4.3E-49 333.1 19.5 191 165-375 1-191 (192)
2 cd04372 RhoGAP_chimaerin RhoGA 100.0 2.7E-44 5.9E-49 332.7 20.3 189 166-372 1-194 (194)
3 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 9.8E-44 2.1E-48 331.5 21.1 197 163-375 2-202 (203)
4 cd04407 RhoGAP_myosin_IXB RhoG 100.0 3.5E-43 7.5E-48 322.4 20.9 185 166-367 1-186 (186)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 3.3E-43 7.1E-48 327.1 20.6 191 164-372 1-199 (199)
6 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.1E-43 4.5E-48 323.4 18.0 176 166-374 1-181 (182)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 5E-43 1.1E-47 329.5 20.7 200 165-376 1-209 (216)
8 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 4.3E-43 9.2E-48 324.2 19.3 190 164-367 1-195 (195)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 8.7E-43 1.9E-47 327.6 20.0 209 163-375 2-217 (220)
10 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.5E-42 3.2E-47 318.9 20.5 184 164-367 1-188 (188)
11 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.1E-42 2.4E-47 326.3 19.8 192 166-376 1-211 (213)
12 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 2.3E-42 5.1E-47 320.5 20.1 190 162-372 2-195 (195)
13 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2E-42 4.3E-47 317.4 19.1 184 166-366 1-185 (186)
14 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 2.8E-42 6.1E-47 317.4 19.5 183 166-367 1-187 (187)
15 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 3.7E-42 8E-47 319.4 20.4 186 166-367 1-200 (200)
16 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 4.9E-42 1.1E-46 318.3 21.0 190 165-372 1-196 (196)
17 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.3E-41 2.7E-46 316.3 20.2 195 165-376 1-199 (202)
18 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1.2E-41 2.6E-46 321.5 19.7 187 165-371 1-224 (225)
19 KOG1451 Oligophrenin-1 and rel 100.0 3.4E-41 7.3E-46 335.8 23.5 303 14-376 260-571 (812)
20 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 2.4E-41 5.1E-46 310.4 20.3 161 166-327 1-163 (185)
21 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.4E-41 3.1E-46 313.7 18.8 177 165-374 1-189 (190)
22 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.9E-41 6.3E-46 314.1 20.5 187 177-376 6-204 (206)
23 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 2.5E-41 5.5E-46 314.9 20.0 187 166-367 1-203 (203)
24 cd04377 RhoGAP_myosin_IX RhoGA 100.0 5.2E-41 1.1E-45 308.7 20.7 185 166-367 1-186 (186)
25 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 3.4E-41 7.4E-46 312.2 19.3 185 166-372 1-192 (192)
26 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 6.6E-41 1.4E-45 309.4 20.3 167 166-333 1-171 (196)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 5.6E-41 1.2E-45 313.9 19.9 187 166-367 1-211 (211)
28 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.3E-40 5.1E-45 305.3 20.2 184 164-367 1-189 (189)
29 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.4E-40 9.5E-45 306.0 21.3 196 166-368 1-206 (207)
30 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 6.4E-40 1.4E-44 305.6 19.6 186 166-376 1-200 (208)
31 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.6E-39 3.4E-44 298.3 20.2 180 167-368 2-184 (184)
32 KOG4407 Predicted Rho GTPase-a 100.0 1.2E-40 2.5E-45 353.3 12.5 342 18-379 922-1361(1973)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 3.2E-39 7E-44 297.4 20.1 178 177-371 14-192 (193)
34 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 3.5E-39 7.6E-44 301.5 19.1 189 166-374 1-210 (212)
35 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 8.5E-39 1.8E-43 293.6 18.1 178 166-367 1-187 (187)
36 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.5E-38 3.3E-43 291.7 18.7 176 169-367 4-183 (200)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 2.1E-38 4.5E-43 293.9 19.6 171 178-367 26-203 (203)
38 KOG1117 Rho- and Arf-GTPase ac 100.0 2.9E-35 6.3E-40 303.7 19.7 323 17-376 490-900 (1186)
39 KOG1450 Predicted Rho GTPase-a 100.0 7.2E-35 1.6E-39 300.5 20.9 321 34-373 270-649 (650)
40 KOG4270 GTPase-activator prote 100.0 1.1E-34 2.3E-39 298.8 21.6 202 160-377 141-348 (577)
41 smart00324 RhoGAP GTPase-activ 100.0 2E-34 4.4E-39 263.0 18.0 170 179-367 2-173 (174)
42 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.2E-33 4.8E-38 264.6 17.0 159 162-327 9-195 (220)
43 KOG2200 Tumour suppressor prot 100.0 2.4E-33 5.1E-38 281.3 16.6 211 162-376 297-514 (674)
44 cd00159 RhoGAP RhoGAP: GTPase- 100.0 2.6E-32 5.7E-37 247.4 17.4 168 181-367 1-169 (169)
45 KOG4269 Rac GTPase-activating 100.0 5.7E-33 1.2E-37 288.2 14.4 184 161-377 895-1088(1112)
46 KOG4406 CDC42 Rho GTPase-activ 100.0 4.3E-31 9.4E-36 256.3 16.5 201 157-377 245-450 (467)
47 PF00620 RhoGAP: RhoGAP domain 100.0 1.8E-31 3.9E-36 237.7 11.3 146 181-327 1-148 (151)
48 KOG2710 Rho GTPase-activating 100.0 9.1E-30 2E-34 252.8 16.2 206 160-376 61-295 (412)
49 KOG4724 Predicted Rho GTPase-a 99.9 4.6E-28 1E-32 246.1 6.2 240 159-421 76-315 (741)
50 KOG3564 GTPase-activating prot 99.9 4.6E-26 1E-30 223.5 16.0 180 179-375 361-545 (604)
51 KOG1453 Chimaerin and related 99.9 1.2E-26 2.7E-31 257.2 13.5 162 165-327 602-771 (918)
52 KOG4271 Rho-GTPase activating 99.8 4.9E-20 1.1E-24 193.5 13.6 355 97-451 286-672 (1100)
53 KOG1452 Predicted Rho GTPase-a 99.8 4.3E-20 9.3E-25 173.4 11.2 166 163-329 182-355 (442)
54 KOG4271 Rho-GTPase activating 99.8 1.6E-20 3.4E-25 197.1 8.7 161 162-323 914-1076(1100)
55 cd01233 Unc104 Unc-104 pleckst 99.8 6E-18 1.3E-22 139.6 11.7 92 18-124 1-98 (100)
56 cd01251 PH_centaurin_alpha Cen 99.8 5.9E-18 1.3E-22 140.3 11.0 92 21-126 1-102 (103)
57 cd01264 PH_melted Melted pleck 99.7 6.4E-18 1.4E-22 137.7 10.2 91 21-124 2-101 (101)
58 cd04405 RhoGAP_BRCC3-like RhoG 99.7 2.1E-17 4.6E-22 152.1 13.2 185 164-376 20-232 (235)
59 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 1.6E-17 3.4E-22 135.7 10.7 90 22-123 2-93 (95)
60 cd01238 PH_Tec Tec pleckstrin 99.7 2.1E-17 4.5E-22 137.7 10.3 94 20-123 1-106 (106)
61 cd01260 PH_CNK Connector enhan 99.7 3.7E-17 8.1E-22 134.0 11.3 92 21-123 2-96 (96)
62 cd01247 PH_GPBP Goodpasture an 99.7 1.5E-16 3.2E-21 128.7 11.3 89 22-122 2-90 (91)
63 cd01252 PH_cytohesin Cytohesin 99.7 1.7E-16 3.7E-21 136.6 12.0 100 20-131 1-120 (125)
64 cd01236 PH_outspread Outspread 99.7 9.3E-17 2E-21 132.2 9.7 90 21-122 1-102 (104)
65 cd01257 PH_IRS Insulin recepto 99.7 1.4E-16 3.1E-21 130.6 10.5 92 18-122 1-100 (101)
66 cd01235 PH_SETbf Set binding f 99.7 2E-16 4.4E-21 130.8 10.6 90 21-124 1-101 (101)
67 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 3.1E-16 6.6E-21 143.3 12.4 144 182-327 8-166 (198)
68 cd01241 PH_Akt Akt pleckstrin 99.6 3.1E-15 6.8E-20 123.8 11.0 97 19-123 1-101 (102)
69 cd01246 PH_oxysterol_bp Oxyste 99.6 5.3E-15 1.2E-19 119.6 10.7 91 21-123 1-91 (91)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.6 4.2E-15 9.1E-20 124.5 9.8 89 21-123 1-107 (108)
71 cd01250 PH_centaurin Centaurin 99.6 1.9E-14 4.1E-19 117.0 9.5 91 21-122 1-93 (94)
72 cd01263 PH_anillin Anillin Ple 99.6 2.5E-14 5.5E-19 120.9 10.1 98 20-123 2-122 (122)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 3E-14 6.6E-19 116.2 10.1 77 34-123 18-98 (98)
74 cd01245 PH_RasGAP_CG5898 RAS G 99.5 2.9E-14 6.3E-19 115.9 8.8 88 21-122 1-97 (98)
75 KOG4370 Ral-GTPase effector RL 99.5 3.2E-14 6.9E-19 138.8 8.6 185 163-380 49-279 (514)
76 PF00169 PH: PH domain; Inter 99.5 2.9E-13 6.2E-18 111.2 12.8 101 19-124 1-103 (104)
77 cd01253 PH_beta_spectrin Beta- 99.5 4.1E-13 8.9E-18 111.7 10.6 94 22-122 2-103 (104)
78 KOG0930 Guanine nucleotide exc 99.5 3.2E-13 6.8E-18 125.5 9.9 103 19-131 260-382 (395)
79 cd01230 PH_EFA6 EFA6 Pleckstri 99.4 1.7E-12 3.7E-17 109.3 11.4 102 21-125 2-112 (117)
80 PF15413 PH_11: Pleckstrin hom 99.4 1.8E-12 3.9E-17 109.0 9.9 98 21-123 1-112 (112)
81 cd01237 Unc112 Unc-112 pleckst 99.4 3.1E-12 6.7E-17 104.1 9.4 91 30-125 13-104 (106)
82 PF15409 PH_8: Pleckstrin homo 99.4 5.2E-12 1.1E-16 100.1 10.1 86 23-123 1-88 (89)
83 cd01254 PH_PLD Phospholipase D 99.3 5.9E-12 1.3E-16 107.4 10.4 76 36-123 32-121 (121)
84 cd01219 PH_FGD FGD (faciogenit 99.3 4.5E-11 9.8E-16 98.7 11.0 98 19-125 2-100 (101)
85 KOG3565 Cdc42-interacting prot 99.2 1.2E-11 2.7E-16 131.5 8.5 146 179-326 217-366 (640)
86 PF15410 PH_9: Pleckstrin homo 99.2 3.1E-11 6.7E-16 102.7 8.4 104 21-124 2-118 (119)
87 smart00233 PH Pleckstrin homol 99.2 4E-10 8.8E-15 91.1 12.0 97 19-124 1-101 (102)
88 cd01256 PH_dynamin Dynamin ple 99.1 5.6E-10 1.2E-14 88.2 9.7 99 19-123 1-104 (110)
89 cd01249 PH_oligophrenin Oligop 99.0 2.5E-09 5.5E-14 86.9 10.2 98 21-121 1-102 (104)
90 cd00821 PH Pleckstrin homology 99.0 1.7E-09 3.8E-14 86.4 8.7 94 21-123 1-96 (96)
91 cd00900 PH-like Pleckstrin hom 99.0 3.9E-09 8.5E-14 84.9 10.6 93 22-123 2-99 (99)
92 cd01234 PH_CADPS CADPS (Ca2+-d 99.0 4.8E-10 1E-14 89.3 4.5 98 20-127 3-113 (117)
93 KOG0690 Serine/threonine prote 99.0 1E-09 2.2E-14 105.4 6.6 107 16-128 12-120 (516)
94 cd01220 PH_CDEP Chondrocyte-de 98.9 1.8E-08 3.8E-13 82.6 11.0 94 19-125 2-98 (99)
95 cd01259 PH_Apbb1ip Apbb1ip (Am 98.9 7.5E-09 1.6E-13 84.4 7.8 101 21-124 2-108 (114)
96 cd01243 PH_MRCK MRCK (myotonic 98.8 4E-08 8.7E-13 81.3 10.7 104 20-123 3-118 (122)
97 cd01242 PH_ROK Rok (Rho- assoc 98.8 6.6E-08 1.4E-12 78.8 10.5 103 21-125 2-111 (112)
98 KOG1090 Predicted dual-specifi 98.8 2.4E-09 5.2E-14 114.2 2.4 94 17-124 1632-1731(1732)
99 KOG4724 Predicted Rho GTPase-a 98.7 1.9E-08 4.1E-13 104.0 5.2 165 162-326 413-589 (741)
100 PF14593 PH_3: PH domain; PDB: 98.5 8.6E-07 1.9E-11 72.8 9.3 91 16-126 10-101 (104)
101 PF08101 DUF1708: Domain of un 98.5 1.3E-06 2.7E-11 89.1 12.2 147 180-328 8-169 (420)
102 KOG3640 Actin binding protein 98.4 4.4E-07 9.5E-12 97.3 6.8 104 17-126 988-1108(1116)
103 KOG2059 Ras GTPase-activating 98.4 5.6E-07 1.2E-11 94.1 7.0 113 18-144 564-683 (800)
104 KOG3751 Growth factor receptor 98.2 3.6E-06 7.8E-11 85.4 7.8 108 16-125 314-425 (622)
105 cd01239 PH_PKD Protein kinase 98.2 8.1E-06 1.8E-10 67.2 7.7 90 20-123 1-117 (117)
106 PLN00188 enhanced disease resi 98.1 1.3E-05 2.8E-10 85.5 10.5 104 17-127 2-112 (719)
107 cd01218 PH_phafin2 Phafin2 Pl 98.1 3.9E-05 8.4E-10 63.3 10.7 98 18-126 3-100 (104)
108 cd01261 PH_SOS Son of Sevenles 98.1 4E-05 8.6E-10 64.0 10.4 102 18-126 3-111 (112)
109 cd01258 PH_syntrophin Syntroph 98.0 3.4E-05 7.3E-10 63.7 7.9 100 22-122 2-107 (108)
110 KOG0932 Guanine nucleotide exc 97.8 9.2E-06 2E-10 83.0 2.4 102 16-125 503-618 (774)
111 PTZ00267 NIMA-related protein 97.8 6.5E-05 1.4E-09 79.5 8.7 101 16-125 374-477 (478)
112 KOG0521 Putative GTPase activa 97.7 1.9E-05 4.1E-10 86.9 3.2 100 17-127 272-371 (785)
113 cd01240 PH_beta-ARK Beta adren 97.6 0.00016 3.5E-09 58.7 5.5 96 18-127 2-101 (116)
114 KOG0248 Cytoplasmic protein Ma 97.4 0.00011 2.4E-09 76.9 3.9 101 17-130 247-347 (936)
115 KOG3723 PH domain protein Melt 97.4 5.9E-05 1.3E-09 77.4 2.0 97 18-127 734-839 (851)
116 PLN02866 phospholipase D 97.4 0.0016 3.4E-08 72.7 12.0 82 35-128 216-311 (1068)
117 cd01222 PH_clg Clg (common-sit 97.3 0.0031 6.7E-08 51.3 10.5 93 18-124 3-95 (97)
118 cd01262 PH_PDK1 3-Phosphoinosi 97.3 0.0015 3.2E-08 51.7 8.0 87 19-124 1-88 (89)
119 KOG3543 Ca2+-dependent activat 97.2 7.6E-05 1.6E-09 77.2 0.2 103 16-127 461-568 (1218)
120 PF12814 Mcp5_PH: Meiotic cell 97.1 0.0084 1.8E-07 51.2 11.6 98 23-125 13-122 (123)
121 KOG1739 Serine/threonine prote 97.1 0.001 2.2E-08 67.3 6.2 104 9-125 14-117 (611)
122 PF15408 PH_7: Pleckstrin homo 97.0 0.00023 5.1E-09 54.9 1.1 87 22-122 1-95 (104)
123 KOG1453 Chimaerin and related 96.8 0.00056 1.2E-08 77.4 2.4 161 165-326 462-668 (918)
124 PF15406 PH_6: Pleckstrin homo 96.6 0.0054 1.2E-07 50.1 5.6 70 39-121 41-110 (112)
125 PTZ00283 serine/threonine prot 96.5 0.011 2.4E-07 62.9 9.7 37 87-125 454-490 (496)
126 KOG3531 Rho guanine nucleotide 96.5 0.001 2.2E-08 71.5 1.6 95 20-124 925-1019(1036)
127 cd01232 PH_TRIO Trio pleckstri 96.4 0.097 2.1E-06 43.9 12.2 88 37-125 24-113 (114)
128 cd01224 PH_Collybistin Collybi 96.3 0.075 1.6E-06 44.0 10.7 95 19-122 2-105 (109)
129 cd01221 PH_ephexin Ephexin Ple 96.2 0.075 1.6E-06 45.2 10.7 97 19-121 3-119 (125)
130 cd01228 PH_BCR-related BCR (br 96.0 0.035 7.6E-07 44.4 7.3 89 19-124 3-94 (96)
131 KOG1449 Predicted Rho GTPase-a 95.8 0.0017 3.6E-08 67.2 -1.1 74 294-376 1-74 (670)
132 cd01231 PH_Lnk LNK-family Plec 95.4 0.12 2.6E-06 41.7 8.2 83 34-122 18-106 (107)
133 KOG4424 Predicted Rho/Rac guan 95.4 0.02 4.3E-07 59.7 4.7 104 15-127 268-372 (623)
134 PF15404 PH_4: Pleckstrin homo 95.3 0.1 2.3E-06 47.5 8.8 33 21-55 1-33 (185)
135 KOG1117 Rho- and Arf-GTPase ac 95.3 0.0079 1.7E-07 65.0 1.7 94 17-125 85-178 (1186)
136 cd01223 PH_Vav Vav pleckstrin 95.1 0.3 6.4E-06 40.9 10.1 86 37-126 20-113 (116)
137 KOG1737 Oxysterol-binding prot 95.1 0.02 4.3E-07 62.8 3.9 91 19-123 77-167 (799)
138 cd01227 PH_Dbs Dbs (DBL's big 94.9 0.35 7.6E-06 41.7 10.3 88 38-126 30-117 (133)
139 PF15405 PH_5: Pleckstrin homo 94.7 0.13 2.7E-06 44.7 7.3 36 88-123 99-134 (135)
140 cd01226 PH_exo84 Exocyst compl 94.4 0.45 9.8E-06 38.8 9.3 80 38-125 20-99 (100)
141 KOG3549 Syntrophins (type gamm 93.9 0.18 3.9E-06 49.5 7.0 107 15-125 277-387 (505)
142 KOG0705 GTPase-activating prot 93.8 0.033 7.1E-07 58.0 1.9 36 89-126 446-481 (749)
143 KOG1449 Predicted Rho GTPase-a 93.4 0.016 3.5E-07 60.1 -1.0 177 163-376 207-390 (670)
144 KOG1738 Membrane-associated gu 91.7 0.026 5.7E-07 59.4 -2.0 59 19-81 562-621 (638)
145 cd01225 PH_Cool_Pix Cool (clon 91.0 1.5 3.2E-05 36.3 7.8 81 37-124 28-109 (111)
146 KOG3551 Syntrophins (type beta 90.8 0.22 4.8E-06 49.6 3.4 106 18-127 291-404 (506)
147 cd01248 PH_PLC Phospholipase C 90.2 3 6.5E-05 34.9 9.5 34 88-122 79-114 (115)
148 KOG4047 Docking protein 1 (p62 90.2 0.15 3.3E-06 52.2 1.8 103 17-124 6-117 (429)
149 PF15411 PH_10: Pleckstrin hom 87.6 9 0.0002 32.2 10.4 86 35-120 19-116 (116)
150 KOG0248 Cytoplasmic protein Ma 86.8 0.26 5.6E-06 52.5 0.9 90 19-124 259-348 (936)
151 KOG4807 F-actin binding protei 84.8 0.014 2.9E-07 57.8 -9.0 82 35-125 33-115 (593)
152 KOG4236 Serine/threonine prote 84.6 0.9 2E-05 47.6 3.5 95 16-125 410-524 (888)
153 KOG0517 Beta-spectrin [Cytoske 81.1 0.039 8.4E-07 64.2 -8.5 101 19-125 2299-2410(2473)
154 KOG3727 Mitogen inducible gene 80.2 0.31 6.7E-06 50.9 -1.8 84 34-125 372-459 (664)
155 cd01255 PH_TIAM TIAM Pleckstri 76.1 26 0.00055 30.5 8.8 87 39-127 51-157 (160)
156 KOG3520 Predicted guanine nucl 74.5 5.2 0.00011 45.9 5.6 47 84-130 681-727 (1167)
157 KOG1264 Phospholipase C [Lipid 73.8 5.1 0.00011 44.0 5.0 43 86-128 872-914 (1267)
158 KOG4424 Predicted Rho/Rac guan 71.3 5.5 0.00012 42.2 4.4 84 34-125 510-596 (623)
159 PF15277 Sec3-PIP2_bind: Exocy 65.6 68 0.0015 25.6 9.2 80 37-125 3-89 (91)
160 PF04714 BCL_N: BCL7, N-termin 64.9 3 6.5E-05 29.1 0.7 21 34-54 27-47 (52)
161 KOG4095 Uncharacterized conser 58.8 3.6 7.8E-05 35.6 0.3 22 34-55 28-49 (165)
162 KOG3523 Putative guanine nucle 53.5 32 0.00069 36.9 6.2 86 34-121 496-591 (695)
163 PF08458 PH_2: Plant pleckstri 49.5 1.5E+02 0.0033 24.6 9.4 38 87-127 69-106 (110)
164 KOG4270 GTPase-activator prote 43.5 21 0.00046 38.4 3.2 154 158-325 32-196 (577)
165 KOG4370 Ral-GTPase effector RL 40.2 88 0.0019 32.2 6.7 35 229-263 118-152 (514)
166 PF04282 DUF438: Family of unk 38.6 1.4E+02 0.0029 22.8 6.0 54 237-290 1-54 (71)
167 PF03471 CorC_HlyC: Transporte 35.0 45 0.00097 25.7 3.1 45 198-247 4-48 (81)
168 PRK15361 pathogenicity island 32.1 45 0.00097 30.3 2.9 27 309-335 1-28 (195)
169 KOG1060 Vesicle coat complex A 29.4 5.1E+02 0.011 29.3 10.7 135 163-301 320-479 (968)
170 KOG0689 Guanine nucleotide exc 27.9 46 0.001 34.8 2.7 39 87-125 322-361 (448)
171 PRK14101 bifunctional glucokin 25.7 80 0.0017 34.8 4.2 71 238-315 302-381 (638)
172 KOG0592 3-phosphoinositide-dep 24.8 65 0.0014 34.4 3.0 86 18-123 450-536 (604)
173 KOG1264 Phospholipase C [Lipid 23.2 75 0.0016 35.5 3.2 35 18-54 474-508 (1267)
174 COG1894 NuoF NADH:ubiquinone o 22.6 2.4E+02 0.0051 29.0 6.3 64 146-209 186-255 (424)
No 1
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-44 Score=333.09 Aligned_cols=191 Identities=23% Similarity=0.428 Sum_probs=175.7
Q ss_pred ccccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHhh
Q 012222 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (468)
Q Consensus 165 vFG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~llK~fLr~ 244 (468)
+||+||+.+++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|........|+|++|++||+|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999977666789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 245 LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||+||+|.+.|+.|+.+....+.++++..++.++ .+||+.|+.+|++|+.||++|+.+++.||||++|||+||||+|+|
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888999999999966 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCC
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 375 (468)
++..+ .........+..++++||+|+++||+++
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 98421 0112335667899999999999999986
No 2
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=2.7e-44 Score=332.71 Aligned_cols=189 Identities=20% Similarity=0.380 Sum_probs=168.7
Q ss_pred cccchHHhhhcCC-CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcC-CC-CCC--CCCChhHHHHHHHH
Q 012222 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KT-EFS--ADEDAHVIGDCVKH 240 (468)
Q Consensus 166 FG~~L~~~~~~~~-~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g-~~-~~~--~~~d~~~va~llK~ 240 (468)
||+||+.++++.+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.++++ .. .+. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 9999999998754 6999999999999999999999999999999999999999985 32 222 23589999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccc
Q 012222 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (468)
Q Consensus 241 fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP 320 (468)
|||+||+||||.++|+.|+++.+..+.++++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888899999999966 79999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccC
Q 012222 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (468)
Q Consensus 321 ~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 372 (468)
+|+|++... . +.........+.+|++||+||++||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999997421 1 2223445667889999999999998
No 3
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.8e-44 Score=331.52 Aligned_cols=197 Identities=22% Similarity=0.354 Sum_probs=175.1
Q ss_pred CCccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC---CCCCChhHHHHHH
Q 012222 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (468)
Q Consensus 163 ~~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~---~~~~d~~~va~ll 238 (468)
+++||+||++++++. ..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... ....|+|++|++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 469999999999764 569999999999999999999999999999999999999999996432 3446999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
|.|||+||+||+|.++|+.|+.+.+..+.++++..++.++ ++||+.|+.+|++|+.||++|++|++.|||+++|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888889999999866 799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCC
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 375 (468)
||+|+|++..++ ..+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~---------------~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS---------------LAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh---------------hhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999984211 012223345668899999999999999986
No 4
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3.5e-43 Score=322.37 Aligned_cols=185 Identities=24% Similarity=0.346 Sum_probs=167.1
Q ss_pred cccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHhh
Q 012222 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRE 244 (468)
Q Consensus 166 FG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr~ 244 (468)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++++++.++.|.. ....+.|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 9999999998888899999999999999999999999999999999999999999843 445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 245 LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||+||||.++|+.|+.+....+..+++.+++.++ ++||+.|+.+|++|+.||++|+++++.||||++|||+||||+|+|
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888889999999866 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
++.+. |+ +....++.++..+|++||+.
T Consensus 160 ~~~~~------------d~----~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS------------DP----LTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC------------CH----HHHHHhhhhhHHHHHHHhhC
Confidence 87421 11 22345577888999999973
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=3.3e-43 Score=327.11 Aligned_cols=191 Identities=23% Similarity=0.424 Sum_probs=168.1
Q ss_pred CccccchHHhhhcC-----CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC-CCCCCChhHHHHH
Q 012222 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDC 237 (468)
Q Consensus 164 ~vFG~~L~~~~~~~-----~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~-~~~~~d~~~va~l 237 (468)
.|||+||++++... ..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|... +....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 48999999998643 24999999999999999999999999999999999999999999653 4456899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccc
Q 012222 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (468)
Q Consensus 238 lK~fLr~LP~pLl~~~~~~~~~~~~~~--~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 315 (468)
||.|||+||+||+|.++|+.|+.+.+. .+.+.++..++.++ ++||+.|+.+|+||+.||++|++|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788999865 799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccC
Q 012222 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (468)
Q Consensus 316 ~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 372 (468)
+||||+|+|++.. + . .+....+..++.+|++||+|+++||
T Consensus 160 ivf~P~llr~~~~------~--------~---~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D--------P---ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C--------H---HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 1 1 2223446677889999999999998
No 6
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.1e-43 Score=323.37 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=165.9
Q ss_pred cccchHHhhhcC-----CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHH
Q 012222 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (468)
Q Consensus 166 FG~~L~~~~~~~-----~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~llK~ 240 (468)
||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+++|......++|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999864 249999999999999999999999999999999999999999997766677899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccc
Q 012222 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (468)
Q Consensus 241 fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP 320 (468)
|||+||+||||.++|+.|+++....+..+++..++.++ ++||+.|+.+|+||+.||++|++|++.||||++|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999865 79999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCC
Q 012222 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (468)
Q Consensus 321 ~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~ 374 (468)
+|+.+. +++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998753 7899999999999986
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-43 Score=329.51 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=175.3
Q ss_pred ccccchHHhhhcC------CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC---CCCCCCCChhHHH
Q 012222 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (468)
Q Consensus 165 vFG~~L~~~~~~~------~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~---~~~~~~~d~~~va 235 (468)
|||+||+.++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.+. .......|+|++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999863 359999999999999999999999999999999999999999863 2334568999999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccc
Q 012222 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (468)
Q Consensus 236 ~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 315 (468)
++||.|||+||+||||.++|+.|+.+....+.++++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999866 799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 316 ~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
+||||+||++...+... .+........+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSKD-----------NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCCc-----------chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 99999999987532211 112233445567788999999999999999754
No 8
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-43 Score=324.18 Aligned_cols=190 Identities=22% Similarity=0.308 Sum_probs=167.4
Q ss_pred CccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCC----CCCChhHHHHHH
Q 012222 164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (468)
Q Consensus 164 ~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~----~~~d~~~va~ll 238 (468)
+|||+||+.++++. ..||.+|.+|++||+++|+ +|||||++|+..+++++++.+|+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 58999999998764 5799999999999999999 69999999999999999999999964332 346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
|.|||+||+||||.++|+.|+++....+.++++..++.+| .+||+.|+.+|+||+.||++|+++++.||||++|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888999999999966 799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
||+|+|++...+. ..+-.++......++.+|++||+|
T Consensus 159 ~P~L~~~~~~~~~------------~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------------CFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------------cchHHHHHHHHhhhhhheehhhcC
Confidence 9999999842111 111244555677788899999986
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.7e-43 Score=327.61 Aligned_cols=209 Identities=22% Similarity=0.357 Sum_probs=173.9
Q ss_pred CCccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC-CCCCCCCChhHHHHHHHH
Q 012222 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (468)
Q Consensus 163 ~~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~-~~~~~~~d~~~va~llK~ 240 (468)
++|||+||+.++++. ..||.+|.+|++||+.+|+.+|||||++|+..+++.|++.++++. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 469999999888864 569999999999999999999999999999999999999999863 344566899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccc
Q 012222 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (468)
Q Consensus 241 fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP 320 (468)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ .+||+.||.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988888889999999866 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccc---cc--cCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCC
Q 012222 321 LLLRPLLAGECELEDD---FD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (468)
Q Consensus 321 ~Ll~~~~~~~~~~e~~---~~--~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 375 (468)
+||+........+..+ +. ..+.+. .........+..+|.+||+||+.||.-.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp 217 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVP 217 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999864321100000 00 000010 1112334456788999999999999854
No 10
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.5e-42 Score=318.95 Aligned_cols=184 Identities=20% Similarity=0.396 Sum_probs=165.0
Q ss_pred CccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC---CCCCChhHHHHHHH
Q 012222 164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVK 239 (468)
Q Consensus 164 ~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~---~~~~d~~~va~llK 239 (468)
++||++|+.++++. ..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|.... ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 48999999999864 569999999999999999999999999999999999999999996532 34679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcc
Q 012222 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (468)
Q Consensus 240 ~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfa 319 (468)
.|||+||+||||.++|+.|+++.+..+..+++..++.++ ++||+.|+.+|++|+.||++|++|++.||||++|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999988899999999966 7999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 320 P~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
|+|+|.+...+ ......+++++++.||.|
T Consensus 160 P~L~~~p~~~~-------------------~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQD-------------------QVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCcc-------------------HHHHHHHHHHHHHHHhcC
Confidence 99999874211 122346678899999865
No 11
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-42 Score=326.27 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=168.7
Q ss_pred cccchHHhhhcCC------------CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC--CCCCCCh
Q 012222 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (468)
Q Consensus 166 FG~~L~~~~~~~~------------~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~--~~~~~d~ 231 (468)
||+||+.++++.+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.+++|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998753 3999999999999999999999999999999999999999998542 3456899
Q ss_pred hHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhc-----c
Q 012222 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (468)
Q Consensus 232 ~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~-----~ 306 (468)
|+||++||.|||+||+||+|.++|+.|+.+.+..+.++++..++.++ .+||+.||.+|++|+.||++|+.+++ .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999999888888999998755 79999999999999999999998775 5
Q ss_pred CCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 307 NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
||||+.|||+||||+|+|++..... ..........+|++||+||+.||....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999999843210 112234466899999999999998754
No 12
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-42 Score=320.52 Aligned_cols=190 Identities=25% Similarity=0.417 Sum_probs=169.4
Q ss_pred CCCccccchHHhhhcC---CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCC-CChhHHHHH
Q 012222 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGDC 237 (468)
Q Consensus 162 ~~~vFG~~L~~~~~~~---~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~-~d~~~va~l 237 (468)
++.+||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....... .|+|++|++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5679999999999764 569999999999999999999999999999999999999999996544444 499999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchh
Q 012222 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (468)
Q Consensus 238 lK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 317 (468)
||.|||+||+||+|.++|+.++.+.... ..+++..++.++ ++||+.|+.+|.+|+.||++|++|++.|+|+++|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 678899999866 69999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccC
Q 012222 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (468)
Q Consensus 318 faP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 372 (468)
|||+|+|++... . .......++.+|++||+||++||
T Consensus 160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987421 1 12345677889999999999998
No 13
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=2e-42 Score=317.38 Aligned_cols=184 Identities=21% Similarity=0.324 Sum_probs=166.6
Q ss_pred cccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC-CCCCCCCChhHHHHHHHHHHhh
Q 012222 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (468)
Q Consensus 166 FG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~-~~~~~~~d~~~va~llK~fLr~ 244 (468)
||+||+.++.+++.||.+|.+|++||+++|+.+|||||++|+..+++++++.++.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877889999999999999999999999999999999999999999874 3445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 245 LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.||||++|||+||||+|+|
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888889999999866 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHh
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~ 366 (468)
++... |+ ++.++++.++..+|++||-
T Consensus 160 ~p~~~------------d~----~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT------------DP----LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC------------CH----HHHHHHHhhccchhhhhcc
Confidence 87421 11 4445667788889999873
No 14
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-42 Score=317.40 Aligned_cols=183 Identities=27% Similarity=0.396 Sum_probs=163.8
Q ss_pred cccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC---CCCCChhHHHHHHHHH
Q 012222 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHV 241 (468)
Q Consensus 166 FG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~---~~~~d~~~va~llK~f 241 (468)
||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+...+++++..+|.|.... ....|+|++|++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 999999999865 469999999999999999999999999999999999999999986432 2456999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcccc
Q 012222 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (468)
Q Consensus 242 Lr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~ 321 (468)
||+||+||||.++|+.|+++.+..+.++++..++.++ ++||+.|+.+|+||+.||++|+++++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999998999999999966 799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 322 Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
|+|++.... ..+.....++.+|++||+|
T Consensus 160 ll~~~~~~~------------------~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQETG------------------NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcch------------------HHHHHhHHHHHHHHHHhhC
Confidence 999874210 1112345678999999985
No 15
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-42 Score=319.40 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=164.5
Q ss_pred cccchHHhhhc-CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHh
Q 012222 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 166 FG~~L~~~~~~-~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr 243 (468)
||+||+.++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999986 45699999999999999999999999999999999999999999864 34567899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCc
Q 012222 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~~~------------~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 311 (468)
+||+||||.++|+.|+++.+.. ..++++..++.+| +.||+.|+.+|+||+.||++|+++++.|||++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2457899999966 79999999999999999999999999999999
Q ss_pred cccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 312 ~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
.|||+||||+|+|++..+. ..|.+..++..++.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence 9999999999999985321 1244455677888999999986
No 16
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.9e-42 Score=318.31 Aligned_cols=190 Identities=21% Similarity=0.354 Sum_probs=169.6
Q ss_pred ccccchHHhhhcC--CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC----CCCCChhHHHHHH
Q 012222 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (468)
Q Consensus 165 vFG~~L~~~~~~~--~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~----~~~~d~~~va~ll 238 (468)
.||+||+..+... ..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|.... ....|+|++|++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887654 569999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
|+|||+||+||||.++|+.|+.+.+..+..+++..++.++ ++||+.|+.+|.+|+.||++|+.|++.|+|+++|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999998888899999999966 799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccC
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 372 (468)
||+|+|++..+ . .........+..+++.||+||++||
T Consensus 160 aP~l~r~~~~~--------------~---~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN--------------M---ETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC--------------H---HHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987421 1 1223345667899999999999998
No 17
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-41 Score=316.32 Aligned_cols=195 Identities=24% Similarity=0.313 Sum_probs=168.4
Q ss_pred ccccchHHhhhc----CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHH
Q 012222 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (468)
Q Consensus 165 vFG~~L~~~~~~----~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~llK~ 240 (468)
|||+||+.++.. .+.||.+|.+|++||++ |+++|||||++|+..+++++++.+|+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999998753 46799999999999987 5999999999999999999999999996543 45789999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccc
Q 012222 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (468)
Q Consensus 241 fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP 320 (468)
|||+||+||+|.++|+.|+.+....+.++++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988888888888888754 79999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 321 ~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
+|+|+..... .+.+. +......++.+|++||+|++.||.-..
T Consensus 158 ~L~~~~~~~~--------~~s~~------~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE--------KMSSS------TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc--------ccchh------HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999874211 11111 112245567899999999999997644
No 18
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-41 Score=321.46 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=162.0
Q ss_pred ccccchHHhhhcC----------------CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC----CC
Q 012222 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (468)
Q Consensus 165 vFG~~L~~~~~~~----------------~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~----~~ 224 (468)
||||+|++.+... +.||.+|.+|++||+++|+++|||||++|+..+++++++.||++. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999988642 358999999999999999999999999999999999999999863 23
Q ss_pred CCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhcCChhHH
Q 012222 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (468)
Q Consensus 225 ~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~-----------------~~~~~~i~~l~~li~~~LP~~n~ 287 (468)
....+++|++|++||+|||+||+||||.++|+.|+.+... .+.++++..++.++ ++||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 3466899999999999999999999999999999887642 45678899999866 79999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 288 ~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
.+|+||+.||++|++|++.||||++|||+||||+|++++.... . .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~~----------~---------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEM----------D---------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcccc----------C---------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999874210 0 01234467899999999
Q ss_pred cccc
Q 012222 368 YENI 371 (468)
Q Consensus 368 ~~~i 371 (468)
++++
T Consensus 221 ~~~~ 224 (225)
T cd04396 221 QDKF 224 (225)
T ss_pred HHhh
Confidence 9986
No 19
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-41 Score=335.84 Aligned_cols=303 Identities=23% Similarity=0.335 Sum_probs=237.5
Q ss_pred CCCCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCC--CCCCccccccccEEecCCccee-ecCCCcee
Q 012222 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVV-VREDKKLL 90 (468)
Q Consensus 14 ~~~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~--~~~~~~~~~l~~i~l~~~~~v~-~~~~k~~~ 90 (468)
+.+...+++||||.+.+....++|.|.||+..+.+-.+-.-+.+.++ ..|. ...+.+..|..-. ..-+|+||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~-----~~~~~lKsC~RRktdSIdKRFC 334 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQ-----TATFKLKSCSRRKTDSIDKRFC 334 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCC-----cceEEehhhccCccccccccee
Confidence 44567899999999999988999999999998765444444333332 2222 2334444443221 22478999
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcchhccCCCCccCCCCCcccccccccccCCCCCCCCccccch
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPI 170 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L 170 (468)
|.+....+.| +.++||-+++++..||+|+..+ .++.....+-+..+.
T Consensus 335 FDve~~erpg-viTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~~------------------- 381 (812)
T KOG1451|consen 335 FDVEVEERPG-VITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYKQ------------------- 381 (812)
T ss_pred eeeeecccCC-eeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhhh-------------------
Confidence 9998766554 6999999999999999997643 222222211110100
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC----C--CCCCCCChhHHHHHHHHHHhh
Q 012222 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----T--EFSADEDAHVIGDCVKHVLRE 244 (468)
Q Consensus 171 ~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~----~--~~~~~~d~~~va~llK~fLr~ 244 (468)
.+-++--=.||.+||+.|+..|++++|+||..|.+.+|++|...+-.-. . .....+|+-+|.+.||.|||.
T Consensus 382 ---~qLd~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRn 458 (812)
T KOG1451|consen 382 ---TQLDDIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRN 458 (812)
T ss_pred ---hhhhhhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHh
Confidence 0001112458999999999999999999999999999999887654321 1 122568999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 245 LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||+||+++++...|+.+++.++.+-|+.+|+.++ .+||..||..|.-|+.||.+|+.|+..|.||..||++||||+|+|
T Consensus 459 LpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlR 537 (812)
T KOG1451|consen 459 LPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLR 537 (812)
T ss_pred CCchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccC
Confidence 9999999999999999999999999999999965 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
+.+ .+.||+++++.++-+|+.||+||+.||...+
T Consensus 538 pQE------------------ETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 538 PQE------------------ETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred chH------------------HHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 983 2578888899999999999999999998655
No 20
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-41 Score=310.38 Aligned_cols=161 Identities=27% Similarity=0.484 Sum_probs=151.9
Q ss_pred cccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC--CCCCChhHHHHHHHHHHh
Q 012222 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 166 FG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~--~~~~d~~~va~llK~fLr 243 (468)
||+||..++..+..||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.... ..+.|+|+||++||+|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999985432 245799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcccccc
Q 012222 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll 323 (468)
+||+||+|.++|+.|+++....+..+++.+++.+| ++||+.|+.+|+||+.||++|+++++.||||++|||+||||+|+
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888899999999966 79999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 012222 324 RPLL 327 (468)
Q Consensus 324 ~~~~ 327 (468)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9874
No 21
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-41 Score=313.67 Aligned_cols=177 Identities=21% Similarity=0.348 Sum_probs=162.2
Q ss_pred ccccchHHhhhc------CCCCCHHHHHHHHHHHHcC-CCccCcEeecCCHHHHHHHHHHHhcCCCCC----CCCCChhH
Q 012222 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHV 233 (468)
Q Consensus 165 vFG~~L~~~~~~------~~~vP~il~~~i~~L~~~g-l~~eGIFR~~g~~~~v~~l~~~~~~g~~~~----~~~~d~~~ 233 (468)
|||+||+++++. +..||.+|.+|++||+++| +.+|||||++|+...++++++++++|.... ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 2469999999999999987 899999999999999999999999985322 23579999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCcc
Q 012222 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (468)
Q Consensus 234 va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~-~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 312 (468)
||++||.|||+||+||+|.++|+.|..+.+.. +..+++..++.++ ++||+.|+.+|++|+.||++|+.|++.||||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988766 7889999999866 799999999999999999999999999999999
Q ss_pred ccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCC
Q 012222 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (468)
Q Consensus 313 nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~ 374 (468)
|||+||||+|++|. .++..+|++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 5789999999999986
No 22
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-41 Score=314.15 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=163.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC-CCCCCChhHHHHHHHHHHhhCCCCCCChhhH
Q 012222 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (468)
Q Consensus 177 ~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~-~~~~~d~~~va~llK~fLr~LP~pLl~~~~~ 255 (468)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.||+|... +....|+|+||++||.|||+||+||+|.++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 457999999999999999999999999999999999999999999653 4456899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhc-----------cCCCCccccchhccccccC
Q 012222 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~-----------~NkM~~~nLA~vfaP~Ll~ 324 (468)
+.|+.+.... .++++..++.++ .+||+.|+.+|+||+.||++|++|++ .||||++|||+||||+|+|
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998765 678899999866 79999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
++..+..+.++ ..+.......+..+|++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98644332222 122334456678899999999999999764
No 23
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=2.5e-41 Score=314.91 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=163.6
Q ss_pred cccchHHhhhc-CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHh
Q 012222 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 166 FG~~L~~~~~~-~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr 243 (468)
||+||+.++.+ ++.||.+|.+|+++|+++|+.+|||||++|+..+++++++.+++|.. ....+.|+|+||++||+|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 46799999999999999999999999999999999999999999864 34566899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCC
Q 012222 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~~~--------------~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 309 (468)
+||+||+|.++|+.|+.+.... +...++..++.++ ++||+.|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999887531 2346788999865 799999999999999999999999999999
Q ss_pred CccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 310 ~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
++.|||+||||+|||++.... ...++.......+..+|++||+|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999985311 01234445677888999999986
No 24
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5.2e-41 Score=308.72 Aligned_cols=185 Identities=26% Similarity=0.381 Sum_probs=168.3
Q ss_pred cccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC-CCCCCCCChhHHHHHHHHHHhh
Q 012222 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (468)
Q Consensus 166 FG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~-~~~~~~~d~~~va~llK~fLr~ 244 (468)
||+||+.++.+++.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|. ......+|+|+||++||+|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888889999999999999999999999999999999999999999984 3445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 245 LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||+||||.++|+.|+.+....+..+++..++.++ ++||+.|+.+|.||+.||++|++|++.|||++.|||+||||+|+|
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998888889999999866 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
++.+. |+ ..+.++..+...+|++||+.
T Consensus 160 ~~~~~------------~~----~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA------------DP----LQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC------------CH----HHHHHHHHHHHHHHHHHhhC
Confidence 88421 11 23456678888999999974
No 25
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-41 Score=312.18 Aligned_cols=185 Identities=24% Similarity=0.413 Sum_probs=166.8
Q ss_pred cccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC--C----CCCCChhHHHHHH
Q 012222 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--F----SADEDAHVIGDCV 238 (468)
Q Consensus 166 FG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~--~----~~~~d~~~va~ll 238 (468)
||+||+.++.+. ..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|... . ....|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 999999999854 56999999999999999999999999999999999999999998531 1 1246999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
|.|||+||+||+|.++|+.|+.+.+..+..+++..++.++ ++||+.|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888889999999966 799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccC
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 372 (468)
||+|+|++..+ ......+..++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987421 1224556789999999999998
No 26
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=6.6e-41 Score=309.35 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=153.9
Q ss_pred cccchHHhhhcCC-CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC---CCCCCChhHHHHHHHHH
Q 012222 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (468)
Q Consensus 166 FG~~L~~~~~~~~-~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~---~~~~~d~~~va~llK~f 241 (468)
||+||+..+++.+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.+|+|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998765 5999999999999999999999999999999999999999998532 34568999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcccc
Q 012222 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (468)
Q Consensus 242 Lr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~ 321 (468)
||+||+||||.++|+.|+++....+...++.+++.++ .+||+.|+.+|.+|+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999999888899999999866 799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcc
Q 012222 322 LLRPLLAGECEL 333 (468)
Q Consensus 322 Ll~~~~~~~~~~ 333 (468)
|+|++.......
T Consensus 160 Llr~~~~~~~~~ 171 (196)
T cd04387 160 LLRPSEKESKIP 171 (196)
T ss_pred cCCCCccccccc
Confidence 999986544433
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.6e-41 Score=313.86 Aligned_cols=187 Identities=21% Similarity=0.316 Sum_probs=160.5
Q ss_pred cccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHh
Q 012222 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 166 FG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr 243 (468)
||+||+.++.+. ++||.+|.+|+++|+++|+.+|||||++|+..+++++++.|++|.. ....+.|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 999999998764 5799999999999999999999999999999999999999999864 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 012222 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~~~---~-------------------~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~ 301 (468)
+||+||||.++|+.|+.+.+.. + ...++.+++.+| ++||++||.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886421 0 013467888866 7999999999999999999999
Q ss_pred hhhccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 302 ~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
+|++.||||+.|||+||||+|+||...+ ....++....+..+..+|++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~--------------~~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTD--------------ATVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCC--------------cchhHHHHhhhhhHHHHHHHHhhC
Confidence 9999999999999999999999997421 111133445577788999999974
No 28
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.3e-40 Score=305.33 Aligned_cols=184 Identities=26% Similarity=0.395 Sum_probs=163.1
Q ss_pred CccccchHHhhhc---CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC-CCCCChhHHHHHHH
Q 012222 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF-SADEDAHVIGDCVK 239 (468)
Q Consensus 164 ~vFG~~L~~~~~~---~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~-~~~~d~~~va~llK 239 (468)
++||+||+.++++ .++||.+|.+|++||+++|+.+|||||++|+..+++++++.+++|.... ..+.|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 3579999999999999999999999999999999999999999996543 44589999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 240 ~fLr~LP~pLl~~~~~~~~~~~~~~~-~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
+|||+||+||+|.+.|+.|+++++.. ...+++..++.++ ++||+.|+.+|.+|+.||++|++|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 6677889999966 799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
||+|||.+... + .......++++++.||+|
T Consensus 160 ~P~l~~~~~~~----~---------------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTDV----E---------------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCCc----c---------------cHHHHHHHHHHHHHHhcC
Confidence 99999987421 1 122346678899999987
No 29
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-40 Score=305.96 Aligned_cols=196 Identities=22% Similarity=0.288 Sum_probs=159.5
Q ss_pred cccchHHhhhcC---CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC--CCC--CCCChhHHHHHH
Q 012222 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS--ADEDAHVIGDCV 238 (468)
Q Consensus 166 FG~~L~~~~~~~---~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~--~~~--~~~d~~~va~ll 238 (468)
||+||+.++++. ..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+++.. .+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 4599999999999999999999999999999999999999998743 221 224899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~---~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 315 (468)
|.|||+||+||||.++|+.|+++..... .+.++..++.++ ++||+.|+.+|+||+.||++|++|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 234466788755 799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcc
Q 012222 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (468)
Q Consensus 316 ~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~ 368 (468)
+||||+|++++......-..+...|+.++ .....+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVS------TVDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccc------hhhHHHHHHHHHHHHHhc
Confidence 99999999998754322111111111111 122345567899999865
No 30
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.4e-40 Score=305.59 Aligned_cols=186 Identities=23% Similarity=0.353 Sum_probs=157.5
Q ss_pred cccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCC--CCCChhHHHHHHHHHHh
Q 012222 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 166 FG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~--~~~d~~~va~llK~fLr 243 (468)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..+++++++.+++|..... .++|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888743 3344 78899999998 99999999999999999999999999965433 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCc
Q 012222 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~------------~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 311 (468)
+||+||||.++|+.|+.+.. ..+.+.++..++.++ .+||+.||.+|++|+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234567788999855 79999999999999999999999999999999
Q ss_pred cccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 312 ~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
.|||+||||+|+||+..+ ...++ .....++.+|++||+||+.||+...
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~~---~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDLH---ENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHHH---HHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999987321 11111 2345678899999999999999765
No 31
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-39 Score=298.26 Aligned_cols=180 Identities=21% Similarity=0.385 Sum_probs=163.3
Q ss_pred ccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC---CCCCCCChhHHHHHHHHHHh
Q 012222 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDCVKHVLR 243 (468)
Q Consensus 167 G~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~---~~~~~~d~~~va~llK~fLr 243 (468)
|.+|+.....+.+||.+|.+|++||+++|+.+|||||++|+..+++++++.++++.. ......|+|+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 788888888888999999999999999999999999999999999999999998642 22456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcccccc
Q 012222 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll 323 (468)
+||+||||.++|+.|+.+.+..+.++++..++.++ .+||+.|+.+|++|+.||++|+.|++.|||+++|||+||||+|+
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999889999999999966 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcc
Q 012222 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (468)
Q Consensus 324 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~ 368 (468)
|++.. . ........++|+.||+||
T Consensus 161 ~~~~~---~------------------~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---S------------------VGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---c------------------hhHHHHHHHHHHHHHhcC
Confidence 98842 0 122456778999999998
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=353.27 Aligned_cols=342 Identities=18% Similarity=0.250 Sum_probs=247.6
Q ss_pred ceEEEeeeeee----ecC----CCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccc-----cccccEEecCCccee-e
Q 012222 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN-----LTLGGIDLNNSGSVV-V 83 (468)
Q Consensus 18 ~v~k~G~L~~~----k~g----~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~-----~~l~~i~l~~~~~v~-~ 83 (468)
...|+||||.. |+| .....|+.-|.+|.++.|+.|++.....+...+... -.-..+.+..|..-. .
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 46799999954 333 447889999999999999999997663332211100 001112222221111 1
Q ss_pred c-CCCceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcchhccCC-------------CCccCCCCC----
Q 012222 84 R-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGIFRNDTN---- 145 (468)
Q Consensus 84 ~-~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~~~~~~-------------~~~~~~~~~---- 145 (468)
. ..++..|.++. .+...+.|+|++.++|-.|++.+++....+.....+++. +++.-....
T Consensus 1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence 1 12233444432 334679999999999999999986654322111111110 000000000
Q ss_pred ---------------------------c--------ccccccccccCCCCC-----------------------CCCccc
Q 012222 146 ---------------------------D--------TIEGSFHQWRDKRPV-----------------------KSLVVG 167 (468)
Q Consensus 146 ---------------------------~--------~~~~~~~~~~~~~~~-----------------------~~~vFG 167 (468)
+ ...++..+||+..+. +-++||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 0 001122345442111 235999
Q ss_pred cchHHhhhc--CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC------CCCCCCChhHHHHHHH
Q 012222 168 RPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK 239 (468)
Q Consensus 168 ~~L~~~~~~--~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~------~~~~~~d~~~va~llK 239 (468)
|+|....-. .+-||.||..|+..+|.+||.+.||||++||...|..|++.+|++.. .+..+.|+++|.+|||
T Consensus 1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence 999765432 34599999999999999999999999999999999999999999843 2345679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcc
Q 012222 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (468)
Q Consensus 240 ~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfa 319 (468)
.|||.|||||||..+|..||++.+..+.-+|+..||++| +.||.++|.+|++|+.||.+|+.|+++|||-++||||+||
T Consensus 1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999999999999999999999966 8999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCCccc
Q 012222 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHR 379 (468)
Q Consensus 320 P~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~~~~ 379 (468)
|+|+|++. |+++ .++..+..+++||++||.+|+++|.+.....
T Consensus 1319 PsiVRts~--------------Dnm~---tmVthM~dQckIVEtLI~~~dwfF~esg~te 1361 (1973)
T KOG4407|consen 1319 PSIVRTSD--------------DNMA---TMVTHMSDQCKIVETLIHYNDWFFDESGTTE 1361 (1973)
T ss_pred cceeccCC--------------ccHH---HHhhcchhhhhHHHHHHhhhhheeccCCCcc
Confidence 99999983 2222 3456788899999999999999999865433
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=3.2e-39 Score=297.41 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=158.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHhhCCCCCCChhhH
Q 012222 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (468)
Q Consensus 177 ~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr~LP~pLl~~~~~ 255 (468)
...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|.. ......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 35699999999999999999999999999999999999999998854 34556799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCcccc
Q 012222 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (468)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~ 335 (468)
+.|+++.+..+.++++..++.++ ..||+.|+.+|+||+.||++|++ ++.||||+.|||+||||+||+.+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999988899999999966 79999999999999999999999 999999999999999999999873211
Q ss_pred ccccCCCcHHHHHHHHHHhHHHHHHHHHHHhccccc
Q 012222 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (468)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~i 371 (468)
..+++...+..+..+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 12445566777889999999987653
No 34
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-39 Score=301.48 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=162.5
Q ss_pred cccchHHhhhcC-CCCCHHHHHHHHHHHHcC--CCcc----CcEeecCCHHHHHHHHHHHhcCCCCC-----CCCCChhH
Q 012222 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (468)
Q Consensus 166 FG~~L~~~~~~~-~~vP~il~~~i~~L~~~g--l~~e----GIFR~~g~~~~v~~l~~~~~~g~~~~-----~~~~d~~~ 233 (468)
||+||+.+++.. ..||.+|.+|++||+++| +..+ ||||++|+.+.+++|++.|++|.... ..++|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999865 469999999999999965 4333 99999999999999999999985432 34689999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccC
Q 012222 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (468)
Q Consensus 234 va~llK~fLr~LP~pLl~~~~~~~~~~~~~~------~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~N 307 (468)
||++||.|||+||+||+|.++|+.|+++... .+.++++.+++.++ .+||+.|+.+|++|+.||++|++++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 56789999999966 7999999999999999999999987666
Q ss_pred ---CCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCC
Q 012222 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (468)
Q Consensus 308 ---kM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~ 374 (468)
||+++|||+||||+|+|+....... .....+..+|++||+||++||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987432111 11345678999999999999986
No 35
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.5e-39 Score=293.59 Aligned_cols=178 Identities=21% Similarity=0.253 Sum_probs=152.8
Q ss_pred cccchHHhhhcC------CCCCHHHHHHHHHHHH-cCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 012222 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (468)
Q Consensus 166 FG~~L~~~~~~~------~~vP~il~~~i~~L~~-~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~ll 238 (468)
||+||++++.+. ..||.+|.+|+++|.+ +|+.+|||||++|+..+++++++.+|+|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998653 2599999999999865 789999999999999999999999999977666668999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhh--ccCCCCccccch
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s--~~NkM~~~nLA~ 316 (468)
|.|||+||+||+|.++|+.++.+.. + ...+++++ .+||+.|+.+|.||+.||++|++++ +.||||++|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~--~----~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASE--D----PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhc--C----HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 9999999999999999999988653 1 23466655 7999999999999999999999754 789999999999
Q ss_pred hccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 317 vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
||||+|+|++..+ . .....++.+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~--------------~---~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDD--------------P---RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCC--------------H---HHHHHccHHHHHHHHHHhcC
Confidence 9999999987421 1 12234567788999999987
No 36
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.5e-38 Score=291.69 Aligned_cols=176 Identities=19% Similarity=0.290 Sum_probs=151.8
Q ss_pred chHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcC-CCCCCCCCChhHHHHHHHHHHhhCCC
Q 012222 169 PILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVKHVLRELPS 247 (468)
Q Consensus 169 ~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g-~~~~~~~~d~~~va~llK~fLr~LP~ 247 (468)
+|.+.....+.+|.+|.+|+++|+++|++.|||||++|+.. +.++++.++++ .......+|+|+||++||.|||+||+
T Consensus 4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPe 82 (200)
T cd04388 4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPN 82 (200)
T ss_pred cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCC
Confidence 34455555688999999999999999999999999999875 77899999986 33445678999999999999999999
Q ss_pred CCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 248 SPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 248 pLl~~~~~~~~~~~~~-~~~~~~~i~~l~~li~~--~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
||||.++|+.|+++.+ ..+.++++..++.++ + .||+.|+.+|+||+.||++|++|+..|+||++|||+||||+|||
T Consensus 83 PLip~~~y~~fi~~~~~~~~~~~~~~~l~~li-~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r 161 (200)
T cd04388 83 PVIPAPVYSEMISRAQEVQSSDEYAQLLRKLI-RSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFR 161 (200)
T ss_pred ccCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcC
Confidence 9999999999999874 556778899999855 4 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 325 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
++.+.. ....+...+|++||.+
T Consensus 162 ~~~~~~---------------------~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 162 FQPASS---------------------DSPEFHIRIIEVLITS 183 (200)
T ss_pred CCcccc---------------------cchhhHHHHHHHHHHH
Confidence 985311 1134567899999985
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=293.87 Aligned_cols=171 Identities=24% Similarity=0.402 Sum_probs=149.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHH-HhcCC-----CCCCC-CCChhHHHHHHHHHHhhCCCCCC
Q 012222 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQGK-----TEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (468)
Q Consensus 178 ~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~-~~~g~-----~~~~~-~~d~~~va~llK~fLr~LP~pLl 250 (468)
+..|.||.+|++||+++|+.+|||||++|+..+++++++. ++.+. ..+.. .+|+|+||++||+|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456789999999999999999999999999999999875 56541 22222 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCC
Q 012222 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (468)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~ 330 (468)
|.++|+.|+.+.+..+.++++..++.+| .+||+.|+.+|++|+.||++|++|++.|||++.|||+||||+|+|++..+
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 9999999999999989999999999866 79999999999999999999999999999999999999999999987321
Q ss_pred CccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 331 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
+++......++.+|++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 22334567788899999987
No 38
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.9e-35 Score=303.69 Aligned_cols=323 Identities=19% Similarity=0.308 Sum_probs=242.1
Q ss_pred CceEEEeeeeeeecCC--------CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCc--ceeecCC
Q 012222 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG--SVVVRED 86 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~--------~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~--~v~~~~~ 86 (468)
..+...|.||..-... .+..-.++||||-|+.|+||.+++...|. +.|.+.... .+.+.+.
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~---------~lI~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN---------GLININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC---------ceeeccceEEEeecCCCC
Confidence 3456679999653221 14456899999999999999999887743 344444422 2222332
Q ss_pred C---ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcchh---------------------ccCCCCccCC
Q 012222 87 K---KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL---------------------VMGHNGIFRN 142 (468)
Q Consensus 87 k---~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~~---------------------~~~~~~~~~~ 142 (468)
. .+.|.+....+.+|.|+|-+++.+++..|..+|.+..- |.-+. .-.++|+|..
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 2 45666666678899999999999999999999988652 21111 0113444443
Q ss_pred CCCc--------c---------------cccccccccCCCC-----------------C-----------CCCccccchH
Q 012222 143 DTND--------T---------------IEGSFHQWRDKRP-----------------V-----------KSLVVGRPIL 171 (468)
Q Consensus 143 ~~~~--------~---------------~~~~~~~~~~~~~-----------------~-----------~~~vFG~~L~ 171 (468)
+.+. . +.+..++...+.. . ...-=|.-|+
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 3221 0 0011111000000 0 0011133444
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC---CCCCChhHHHHHHHHHHhhCCCC
Q 012222 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (468)
Q Consensus 172 ~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~---~~~~d~~~va~llK~fLr~LP~p 248 (468)
++.-..+.||.||..||.|+.++|+..|||||++|...++.+|.+.|-++...+ ..+.-+.+|+++||+|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 444445779999999999999999999999999999999999999999875432 34568999999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCC
Q 012222 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (468)
Q Consensus 249 Ll~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~ 328 (468)
|+|.++|..|++++...+.++++..++.+| ..||..||.+|+.|+.||++|..+++.|+|+++|||.||||+||...-.
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq 877 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ 877 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC
Confidence 999999999999999999999999999977 6999999999999999999999999999999999999999999997621
Q ss_pred CCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 329 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
..+..++++-||.+|..+|.-+.
T Consensus 878 -------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 878 -------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 23566899999999999999654
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-35 Score=300.49 Aligned_cols=321 Identities=19% Similarity=0.303 Sum_probs=234.8
Q ss_pred cCCCeeEEEEEeCCeEEEEecCCCCCCCC---CCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCH
Q 012222 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (468)
Q Consensus 34 ~k~WkkRwfVL~~~~L~yyk~~~~~~~~~---~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~ 110 (468)
...|..-|..+.++.++||.+...+...+ ...-........+.....-..+...+..+++......+..|+++..++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 44599999999999999998876544332 111000111111211111011111112344444445567899999999
Q ss_pred HHHHHHHHHHHHHHHhCCcchhccCCCCc------cCCCCC---------------------ccc---cc---c------
Q 012222 111 EDLYEWKTALELALAQAPSAALVMGHNGI------FRNDTN---------------------DTI---EG---S------ 151 (468)
Q Consensus 111 ~e~~~Wi~aI~~ai~~~p~~~~~~~~~~~------~~~~~~---------------------~~~---~~---~------ 151 (468)
.+...|..+++.++...++.+-...++.+ ...... ..+ .+ .
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~ 429 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQ 429 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchH
Confidence 99999999999999866553322111100 000000 000 00 0
Q ss_pred ------------cccccCCC-CCCCCccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHH
Q 012222 152 ------------FHQWRDKR-PVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE 217 (468)
Q Consensus 152 ------------~~~~~~~~-~~~~~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~ 217 (468)
.+..++.. +.+.+|||++|+.+|++. +.||.+|..|+..|+..|++.+||||++|+...|++|+.+
T Consensus 430 ~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~ 509 (650)
T KOG1450|consen 430 KKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQ 509 (650)
T ss_pred HHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHh
Confidence 00012222 224799999999999865 5699999999999999999999999999999999999999
Q ss_pred HhcCCC-CC--CCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 012222 218 YEQGKT-EF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294 (468)
Q Consensus 218 ~~~g~~-~~--~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~ 294 (468)
++.... .+ ..+.|+|+|+++||.|||+||+||+|..+...|..+........+...+.++| ..||.+|+.||+||+
T Consensus 510 ~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~lv 588 (650)
T KOG1450|consen 510 SDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYLV 588 (650)
T ss_pred cCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHHH
Confidence 996532 22 33479999999999999999999999999999999999999999999999977 699999999999999
Q ss_pred HHHHHHHhhhccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCC
Q 012222 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (468)
Q Consensus 295 ~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~ 373 (468)
.||++|..|++.|||+.+||||||||+|+.+.... +. .+..+..+..||+.||+++..+|+
T Consensus 589 ~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~------------~~------~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 589 RHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET------------SS------EAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHhccccccccccceEEEeccccccccccc------------cc------hhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999976321 11 123456688999999999999996
No 40
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=298.76 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=182.2
Q ss_pred CCCCCccccchHHhhhcC----CCCCHHHHHHHH-HHH-HcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhH
Q 012222 160 PVKSLVVGRPILLALEDI----DGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHV 233 (468)
Q Consensus 160 ~~~~~vFG~~L~~~~~~~----~~vP~il~~~i~-~L~-~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~ 233 (468)
.....||||++..+.... +.||.++..+.. +|+ +.|++.|||||++|...+++.+|+++|.|........|||+
T Consensus 141 s~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~ 220 (577)
T KOG4270|consen 141 SASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHC 220 (577)
T ss_pred cchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHH
Confidence 346789999998887643 347999999998 666 47899999999999999999999999999654433789999
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccc
Q 012222 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (468)
Q Consensus 234 va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~n 313 (468)
+|++||.||||||+|++++++|+.|+.+....+.+++++.++.++ .+||+.|+.+|+|++.||+.|+++++.||||++|
T Consensus 221 ~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~N 299 (577)
T KOG4270|consen 221 LAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARN 299 (577)
T ss_pred HHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchhh
Confidence 999999999999999999999999999999999999999999965 7999999999999999999999999999999999
Q ss_pred cchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCCc
Q 012222 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (468)
Q Consensus 314 LA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~~ 377 (468)
|||||||+|+|+. +..+.++.+++....+..+|+..|+++++.|+....
T Consensus 300 lAiV~gPNl~~~~---------------~p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 300 LAIVFGPNLLWMK---------------DPLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELE 348 (577)
T ss_pred ceeEecCCccccC---------------ChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 9999999999987 356778888888889999999999999999998764
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=2e-34 Score=262.95 Aligned_cols=170 Identities=29% Similarity=0.480 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC--CCCCChhHHHHHHHHHHhhCCCCCCChhhHH
Q 012222 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (468)
Q Consensus 179 ~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~--~~~~d~~~va~llK~fLr~LP~pLl~~~~~~ 256 (468)
.||.+|..|++||+++|+++|||||++|+..+++++++.+++|.... ....|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999996644 6779999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCccccc
Q 012222 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (468)
Q Consensus 257 ~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~ 336 (468)
.|+.+....+..+++..++.++ ++||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 9999998888899999999966 799999999999999999999999999999999999999999999984211
Q ss_pred cccCCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234467788999999987
No 42
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=2.2e-33 Score=264.58 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=140.3
Q ss_pred CCCccccchHHhhhc-----------------------CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHH----HHHH
Q 012222 162 KSLVVGRPILLALED-----------------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRR 214 (468)
Q Consensus 162 ~~~vFG~~L~~~~~~-----------------------~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~----v~~l 214 (468)
..++||.+|+.+..- ...||.+|.+|++||+++|+.+|||||++|+... ++++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l 88 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEI 88 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHH
Confidence 456899999888751 1138999999999999999999999999999999 9999
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHh-cCChhHHHHHHHH
Q 012222 215 VQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRI 293 (468)
Q Consensus 215 ~~~~~~g~~~~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~-~LP~~n~~~L~~L 293 (468)
++.+|+|.... ...|+|++|++||.|||+||+||||.++|+.|+++.. .+ ...++. +++ .||+.|+.+|.||
T Consensus 89 ~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~-~~----~~~~~~-ll~~~LP~~n~~~l~~L 161 (220)
T cd04380 89 RDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVA-NN----EEDKRQ-VIRISLPPVHRNVFVYL 161 (220)
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhc-Cc----HHHHHH-HHHhhCCHHHHHHHHHH
Confidence 99999996543 6789999999999999999999999999999999862 22 123455 447 9999999999999
Q ss_pred HHHHHHHHhhhccCCCCccccchhccccccCCCC
Q 012222 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (468)
Q Consensus 294 ~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~ 327 (468)
+.||++|+++++.|||++.|||+||||+|+|++.
T Consensus 162 ~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 162 CSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999999999999999999999999999999985
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-33 Score=281.25 Aligned_cols=211 Identities=24% Similarity=0.342 Sum_probs=174.1
Q ss_pred CCCccccchHHhhhcCC-CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC---CCCCCCChhHHHHH
Q 012222 162 KSLVVGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC 237 (468)
Q Consensus 162 ~~~vFG~~L~~~~~~~~-~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~---~~~~~~d~~~va~l 237 (468)
-+.||||||..++++.+ .||.+|.+++.||+++|++++||||++|.+++|+.|++.++..-. ..++....|++|.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 46899999999999765 599999999999999999999999999999999999999988532 34556789999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchh
Q 012222 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (468)
Q Consensus 238 lK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 317 (468)
||+|||+||+||||.++.+.|+.+++..+..+++++++.+|+ .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC---ccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 318 MAPLLLRPLLAGEC---ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 318 faP~Ll~~~~~~~~---~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
|||+||........ .+-.--...+-+...- .+...-+..++..||.+++.+|....
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~ke---l~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQKE---LNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCchHH---HHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999975432111 0000000000011111 12233456789999999999998644
No 44
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=2.6e-32 Score=247.41 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC-CCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 012222 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (468)
Q Consensus 181 P~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~-~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~ 259 (468)
|.+|.+|++||+++|+.+|||||++|+..+++++++.++.|... .....|+|++|++||.|||+||+||||.+.|+.++
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999665 56778999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCcccccccc
Q 012222 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (468)
Q Consensus 260 ~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~ 339 (468)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9999888999999999966 69999999999999999999999999999999999999999999987421
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHhc
Q 012222 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (468)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~iv~~lI~~ 367 (468)
+........+..++++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 12233456678899999975
No 45
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-33 Score=288.19 Aligned_cols=184 Identities=21% Similarity=0.387 Sum_probs=164.8
Q ss_pred CCCCccccchHHhhh-----cCCCCCHHHHHHHHHHH-HcCCCccCcEeecCCHHHHHHHHHHHhcC-CCC---CCCCCC
Q 012222 161 VKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTE---FSADED 230 (468)
Q Consensus 161 ~~~~vFG~~L~~~~~-----~~~~vP~il~~~i~~L~-~~gl~~eGIFR~~g~~~~v~~l~~~~~~g-~~~---~~~~~d 230 (468)
.++.|||.|+...+. +..++|.||.+|++||+ .+|++.|||||++|.+..|+.|+++||.+ +.. -..+.|
T Consensus 895 ~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~d 974 (1112)
T KOG4269|consen 895 KQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMD 974 (1112)
T ss_pred eeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccccc
Confidence 468999987765543 23469999999999999 59999999999999999999999999998 332 235679
Q ss_pred hhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCC
Q 012222 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (468)
Q Consensus 231 ~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 310 (468)
||+|||+||+|||+||+|||+.++|..|.......++..+...+..+| ..||++|..++.+|+.||++|+.++.+|||+
T Consensus 975 Vn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNKMn 1053 (1112)
T KOG4269|consen 975 VNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNKMN 1053 (1112)
T ss_pred HHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999977 6899999999999999999999999999999
Q ss_pred ccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCCc
Q 012222 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (468)
Q Consensus 311 ~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~~ 377 (468)
.+||++||+|+|.+|. .+...+|.||+.||.+...
T Consensus 1054 lrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1054 LRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred ccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchH
Confidence 9999999999999987 3456788889999998664
No 46
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=4.3e-31 Score=256.26 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=175.4
Q ss_pred CCCCCCCCccccchHHhhhc---CCCCCHHHHHHHHHHHHcC-CCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCC-Ch
Q 012222 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DA 231 (468)
Q Consensus 157 ~~~~~~~~vFG~~L~~~~~~---~~~vP~il~~~i~~L~~~g-l~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~-d~ 231 (468)
.+.+++++.||+||..+.+. ++.+|.+|..|+++|..+| +.+|||||++++.+.+.++.+.+|+|..+..+.+ |+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 45677899999999988864 4669999999999999999 9999999999999999999999999987666555 49
Q ss_pred hHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCc
Q 012222 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (468)
Q Consensus 232 ~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 311 (468)
|..|.++|.|||+||+||++.++|+.+...... +..++...+++++-.+||+.|+.++++++.||.+|++|+.+|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 999999999999999999999999988766543 4567888889877556999999999999999999999999999999
Q ss_pred cccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCCc
Q 012222 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (468)
Q Consensus 312 ~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~~ 377 (468)
.|||+||||+|+|+...... ..+.+.++.++++||+||..+|..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~t-------------------l~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESLT-------------------LKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeeccccccccccccc-------------------HHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 99999999999998842110 123567889999999999999997663
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.97 E-value=1.8e-31 Score=237.71 Aligned_cols=146 Identities=30% Similarity=0.520 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC--CCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHH
Q 012222 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (468)
Q Consensus 181 P~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~--~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~ 258 (468)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... .....|+|++|++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999765 6788999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCC
Q 012222 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (468)
Q Consensus 259 ~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~ 327 (468)
+.+....+.++++..++.++ .+||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+|++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~ 148 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPS 148 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGST
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCc
Confidence 99888899999999999966 799999999999999999999999999999999999999999999874
No 48
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=9.1e-30 Score=252.83 Aligned_cols=206 Identities=22% Similarity=0.354 Sum_probs=169.8
Q ss_pred CCCCCccccchHHhhhc-------------CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcC-----
Q 012222 160 PVKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----- 221 (468)
Q Consensus 160 ~~~~~vFG~~L~~~~~~-------------~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g----- 221 (468)
.....+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++
T Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~ 140 (412)
T KOG2710|consen 61 VLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGI 140 (412)
T ss_pred ccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccc
Confidence 34456777777665432 134999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 012222 222 KTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (468)
Q Consensus 222 ~~~~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~ 301 (468)
+...++++++|++|++||+|||+||+||||.++|+.|+..+......+++..++.++ ..||++|+.+|.+|+.||+.|+
T Consensus 141 ~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~-~llp~~nr~~l~~ll~fL~~~a 219 (412)
T KOG2710|consen 141 DVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLI-YLLPKCNRDTLEVLLGFLSVVA 219 (412)
T ss_pred cccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHH-HhcCccchhHHHHHHhhhhhhh
Confidence 345677899999999999999999999999999999999999998889999999866 6999999999999999999999
Q ss_pred hhhccC-----------CCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccc
Q 012222 302 SHAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYEN 370 (468)
Q Consensus 302 ~~s~~N-----------kM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~ 370 (468)
.|++.| +|++.|||+||+|+++.........+.. ...+ .......+..+++.|++|++.
T Consensus 220 ~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~~~s~--~~~~--------~~s~~~~i~~~~~~~~~N~e~ 289 (412)
T KOG2710|consen 220 SHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHKELSV--TGVA--------NESESEAIVNFAQMMIENLEA 289 (412)
T ss_pred cccccccccccccccCcccchhhhhhhhcchhhhcccCCCccccc--cccc--------chhhHHHHHHHHHHhhhhHHH
Confidence 999998 9999999999999999953211111111 0000 011233456789999999999
Q ss_pred cCCCCC
Q 012222 371 IFDDES 376 (468)
Q Consensus 371 iF~~~~ 376 (468)
+|..++
T Consensus 290 ~f~ip~ 295 (412)
T KOG2710|consen 290 LFQIPP 295 (412)
T ss_pred hhcCCc
Confidence 999544
No 49
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-28 Score=246.08 Aligned_cols=240 Identities=18% Similarity=0.191 Sum_probs=212.8
Q ss_pred CCCCCCccccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 012222 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (468)
Q Consensus 159 ~~~~~~vFG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~ll 238 (468)
.++++.+||.||..+|.+.+ +|..+..++-+|...|..++||||..++...+++|++.+|.|..+..+...+|++|+++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45678999999999999877 99999999999999999999999999999999999999999988778888999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhc
Q 012222 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (468)
Q Consensus 239 K~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 318 (468)
|.|||.+|.-+|...+|+.|+-.....+.++++.+++++. .+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 9999999999999999999999999999999999999955 799999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCCCCCCc
Q 012222 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (468)
Q Consensus 319 aP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~d 398 (468)
+|+++++....+.+.+.++ .+++.-+++|||+||-.||+++...... .++......++.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~~fr---~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEGIFR---KSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccceee---cccccccchhhhhh
Confidence 9999999876555554433 3345568999999999999998864443 44445666777888
Q ss_pred cccccccCCCCCCCCCCCCCCCC
Q 012222 399 EENLDMKNNGYHDAQNEVDPESD 421 (468)
Q Consensus 399 ~~~~~~~~~~~~s~e~e~~~~~~ 421 (468)
.+..++ |+.||+.+++.+...+
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~ 315 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKE 315 (741)
T ss_pred hccccc-cccccccchhhhhhhh
Confidence 889988 9999999988876554
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=223.52 Aligned_cols=180 Identities=22% Similarity=0.358 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC-CCCCCCChhHHHHHHHHHHhhCCCCCCChhhHHH
Q 012222 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTA 257 (468)
Q Consensus 179 ~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-~~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~ 257 (468)
-||.+|..|+..||.+||.+|||||++|....+++|+++|-+|+. ......|+|+||++||.|||+|.+||||.....+
T Consensus 361 MIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rd 440 (604)
T KOG3564|consen 361 MIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRD 440 (604)
T ss_pred cchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHH
Confidence 499999999999999999999999999999999999999999965 4566789999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCcccccc
Q 012222 258 LLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDF 337 (468)
Q Consensus 258 ~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~ 337 (468)
|++++.+.+....+.++-+.+ ..||..||.+|.|||-|+++|++ +..|||+..|||.+|||+++..+..++
T Consensus 441 f~eAa~~tD~dn~~~aly~aV-~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p------- 511 (604)
T KOG3564|consen 441 FMEAAEITDEDNSILALYQAV-GELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP------- 511 (604)
T ss_pred HHHHhcCCCchhHHHHHHHHH-HhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc-------
Confidence 999999988888888877767 58999999999999999999888 889999999999999999998653211
Q ss_pred ccCCCcHHHHHHHHHHhHHHHHHHHHHHh----cccccCCCC
Q 012222 338 DMNGDNSAQLLAAANAANNAQAIIATLLE----EYENIFDDE 375 (468)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~iv~~lI~----~~~~iF~~~ 375 (468)
| . ..+.+++..+.++|+.|++ +|.++...+
T Consensus 512 ----d--~--~~~l~dv~~q~rvmkaLlelp~~yWsqfl~v~ 545 (604)
T KOG3564|consen 512 ----D--Q--VTMLQDVKTQPRVMKALLELPLEYWSQFLGVE 545 (604)
T ss_pred ----c--H--hHHHHhhhhhHHHHHHHHhCCHHHHHHhhccc
Confidence 1 1 2223445555666666654 555554443
No 51
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-26 Score=257.20 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=150.5
Q ss_pred ccccchHHhhh-cCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCC-CCCCCCCChhHHHHHHHHHH
Q 012222 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (468)
Q Consensus 165 vFG~~L~~~~~-~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~-~~~~~~~d~~~va~llK~fL 242 (468)
.||+.|..++. ....||.++.+|+.+|+.+|+.+|||||++|...+++.|...++.|. .+...+.|+|++++++|.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999998 56779999999999999999999999999999999999999999986 35667899999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccch
Q 012222 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (468)
Q Consensus 243 r~LP~pLl~~~~~~~~~~~~~~~~~~------~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 316 (468)
|+||+||+++.+|+.|+.+....... +++..+..++ +.||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999999883333 4888999855 7999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 012222 317 CMAPLLLRPLL 327 (468)
Q Consensus 317 vfaP~Ll~~~~ 327 (468)
||||+|+|+++
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999985
No 52
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.82 E-value=4.9e-20 Score=193.48 Aligned_cols=355 Identities=34% Similarity=0.435 Sum_probs=281.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcc-hhccCCCCccCCCCCcccccc-cccccCCCCCCCCccccchHHhh
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vFG~~L~~~~ 174 (468)
..+++.|...+++.++..+|-.+++.+...||.+ +.+++|+|+++..+.++..++ .-.|+...++.+.++|+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4456788999999999999999999999999999 889999999999999887764 66677788899999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCCccC---cEeecC-CHHHHHHHHHHHh-cCCCCC--CCCCChh--HHHHHHH--HHHh
Q 012222 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (468)
Q Consensus 175 ~~~~~vP~il~~~i~~L~~~gl~~eG---IFR~~g-~~~~v~~l~~~~~-~g~~~~--~~~~d~~--~va~llK--~fLr 243 (468)
+..++-|.+..+.+.+|+.+|+..|| |-|.++ ++..|+.-...|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 99999999999999999999999999 999999 7888887777775 555433 2335888 6888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHHhc--CChhHHH----HHHHHHHHHHHHHhhhccCCCCcc-cc
Q 012222 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (468)
Q Consensus 244 ~LP~pLl~~~~~~~~~~~--~~~~~~~~~i~~l~~li~~~--LP~~n~~----~L~~L~~~L~~V~~~s~~NkM~~~-nL 314 (468)
.++..+.|...+..+..+ +...-.+.|+..++..+++. .|.+|+. ++.+|+..|..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999888887777 55555677999999989887 8988887 888888889999999999999999 99
Q ss_pred chhccc-cccC-CCCCCCCccccc-cccCCCcHHH----HHHHHHHhH-HHHHHHHHHHhcccccCCCCCccccCCCCCC
Q 012222 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (468)
Q Consensus 315 A~vfaP-~Ll~-~~~~~~~~~e~~-~~~~~~~~~~----~~~~~~~~~-~~~~iv~~lI~~~~~iF~~~~~~~~~~~~~~ 386 (468)
+.|.+| .|++ |-..+.|.+|.. ++..+|...+ +.+|...++ .++.+|-.+++.|..||.+........+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 556788989876 9999999998 777777777 5889999999999999999886655554444
Q ss_pred CCCCCCC--CCCCccccccccCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCccccccccc
Q 012222 387 HVDNSGS--EDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKVLYF 451 (468)
Q Consensus 387 ~~~~~~~--~~~~d~~~~~~~~~~~~s~e~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 451 (468)
.+..+.. ..+.+.+.+...-....+..++.+....+++......+..|..+++.+|.+.|+++..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~ 672 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNL 672 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCc
Confidence 3332221 3333333333333333344444555555555566667777777777777776666443
No 53
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.82 E-value=4.3e-20 Score=173.42 Aligned_cols=166 Identities=21% Similarity=0.258 Sum_probs=140.8
Q ss_pred CCccccchHHhhhcC-CCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCCC----CCCChhHHHHH
Q 012222 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDC 237 (468)
Q Consensus 163 ~~vFG~~L~~~~~~~-~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~----~~~d~~~va~l 237 (468)
..|||.+|+.++++. ..-|+++.+|++.||++|++.-|+|+++|++.+-+.|++.|+.....+. ..-|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 459999999999875 4578899999999999999999999999999999999999998643221 12578899999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCcccc
Q 012222 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (468)
Q Consensus 238 lK~fLr~LP~pLl~~~~~~~~~~~~~~---~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 314 (468)
+|.|||||||||++...++..++++.. .+.+.-...+-. |+.-|+..++..|..++.||..|..+|+.|+|++..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888777542 233333444444 5579999999999999999999999999999999999
Q ss_pred chhccccccCCCCCC
Q 012222 315 AACMAPLLLRPLLAG 329 (468)
Q Consensus 315 A~vfaP~Ll~~~~~~ 329 (468)
|.+|||.||-...+-
T Consensus 341 s~i~~P~L~~~~~t~ 355 (442)
T KOG1452|consen 341 SLIFAPLLFFCLDTF 355 (442)
T ss_pred HHHhhhhHHHhhccc
Confidence 999999999876543
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-20 Score=197.15 Aligned_cols=161 Identities=23% Similarity=0.376 Sum_probs=147.4
Q ss_pred CCCccccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCCC--CCCCChhHHHHHHH
Q 012222 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVK 239 (468)
Q Consensus 162 ~~~vFG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~~--~~~~d~~~va~llK 239 (468)
....||.||..+......||.++.+|++||++.|+.+|||||++|+.....+++.+|.+..... .-+..+|++|+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 3568999999888888889999999999999999999999999999999999999999843222 23456899999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhcc
Q 012222 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (468)
Q Consensus 240 ~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfa 319 (468)
.||..||+||+|+.+...+.++..+.+...++..++..+ ..||+.|+.+++|++.||.+|+.....|.||..||+|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999866 6999999999999999999999999999999999999998
Q ss_pred cccc
Q 012222 320 PLLL 323 (468)
Q Consensus 320 P~Ll 323 (468)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8766
No 55
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.76 E-value=6e-18 Score=139.64 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=71.7
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC------CCceeE
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLLT 91 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~------~k~~~f 91 (468)
.|+|+|||+ |+|+..+.|++|||||+++.|+||+++++.. +.+.|+|..+. +.... .+.++|
T Consensus 1 ~v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~-v~~~~~~~~~~~~~~~F 68 (100)
T cd01233 1 VVSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTAR-VEHSEDQAAMVKGPNTF 68 (100)
T ss_pred CcceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccE-EEEccchhhhcCCCcEE
Confidence 378999765 6777789999999999999999999988765 45567777542 22221 245678
Q ss_pred EEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 92 ~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
.|.. ..|+|+|+|+|++|+++||++|+..+
T Consensus 69 ~I~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 69 AVCT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EEEC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 7743 47999999999999999999998765
No 56
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.75 E-value=5.9e-18 Score=140.30 Aligned_cols=92 Identities=28% Similarity=0.458 Sum_probs=68.2
Q ss_pred EEeeeeeeecCCC-cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCc---ceee------cCCCcee
Q 012222 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG---SVVV------REDKKLL 90 (468)
Q Consensus 21 k~G~L~~~k~g~~-~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~---~v~~------~~~k~~~ 90 (468)
|+||| .|+|+. .++||+|||||+++.|+||+++.+..| .|.|.|..+. .|.. .....++
T Consensus 1 KeG~L--~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~---------~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFM--EKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFA---------KGEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeE--EecCCCCCCCceeEEEEEeCCEEEEECCCCCcCc---------CcEEEeeccccceeEeccCCccccccccce
Confidence 68966 577765 699999999999999999999887764 3455554332 1211 1122236
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
|.+.. ..|+|+|+|+|++|+.+||+||++++..
T Consensus 70 F~i~t---~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 70 VTLVT---PERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred EEEEe---CCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 66643 3899999999999999999999999863
No 57
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.75 E-value=6.4e-18 Score=137.73 Aligned_cols=91 Identities=27% Similarity=0.405 Sum_probs=73.2
Q ss_pred EEeeeeeeecCC---CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC------CceeE
Q 012222 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (468)
Q Consensus 21 k~G~L~~~k~g~---~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~------k~~~f 91 (468)
.+| |+.++|+ ..|+|++|||+|+++.|+|||+.....|. .+.|+|+.+.+|....+ +.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~--------~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPD--------DCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCC--------CceEEcccceEEeeccccccccccCcEE
Confidence 589 5567777 79999999999999999999988665432 25899999888865542 23688
Q ss_pred EEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 92 ~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
.+.. ..|+|+|+|+|++++++||++|..|+
T Consensus 72 ei~t---p~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFT---ADKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEc---CCceEEEEeCCHHHHHHHHHHHHhhC
Confidence 7754 46999999999999999999998763
No 58
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.74 E-value=2.1e-17 Score=152.05 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=144.6
Q ss_pred CccccchHHhhhcC-CCCCHHHHHHH--HHHHHcCCCc--cCcEeecCCHHHHHHHHHHHhcCCCC--CCCCCChh----
Q 012222 164 LVVGRPILLALEDI-DGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (468)
Q Consensus 164 ~vFG~~L~~~~~~~-~~vP~il~~~i--~~L~~~gl~~--eGIFR~~g~~~~v~~l~~~~~~g~~~--~~~~~d~~---- 232 (468)
.+||+|+-+-+.+. ...|..+.... +++..+.++. -|+||+++...-+...++.++..... ...+...+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 38999887665544 34677775555 5555554444 69999999999999999999876321 11111112
Q ss_pred -------HHHHHHHHHHhhCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHh
Q 012222 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (468)
Q Consensus 233 -------~va~llK~fLr~LP~pLl~~~~~~~~~~~~~---~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~ 302 (468)
+||.+++.||++||+||+|..+|+.++.++. ....+.++++++-+++ .||++||..|+.|+.||++|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998888776 3457899999998775 9999999999999999999999
Q ss_pred hh-------ccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCC
Q 012222 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (468)
Q Consensus 303 ~s-------~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~ 375 (468)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||.-.
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 25676 899999999999882 10 1335689999999999999865
Q ss_pred C
Q 012222 376 S 376 (468)
Q Consensus 376 ~ 376 (468)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 59
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.74 E-value=1.6e-17 Score=135.72 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=68.3
Q ss_pred EeeeeeeecCCCcCCCeeEEEEEeC--CeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCC
Q 012222 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (468)
Q Consensus 22 ~G~L~~~k~g~~~k~WkkRwfVL~~--~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~ 99 (468)
+|||++...++..|+|++|||||++ +.|+||+++.+.. ++|.|+|..+..+....++++.|.|.. .
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t---~ 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS---N 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc---C
Confidence 6977654433348999999999984 5899999988766 566788877544333334456676643 4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 100 GRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 100 ~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
+|+|+|+|+|++|+++||++|+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999875
No 60
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.73 E-value=2.1e-17 Score=137.74 Aligned_cols=94 Identities=23% Similarity=0.254 Sum_probs=69.7
Q ss_pred EEEeeeeeeecCC---CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC---------CC
Q 012222 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---------DK 87 (468)
Q Consensus 20 ~k~G~L~~~k~g~---~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~---------~k 87 (468)
+|+|||+++.+|. .+++||+|||||+++.|+||+++.+.... +.|.|+|..+..+.... .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~-------~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGS-------KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccC-------cceeEECCcceEEEEecCCcCccccccc
Confidence 5899998664333 35699999999999999999998764111 45677777765554221 23
Q ss_pred ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.++|.+.. ..++||++|+|++|+++||+||+++
T Consensus 74 ~~~F~i~t---~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVH---DEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEe---CCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 56777754 3689999999999999999999863
No 61
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.72 E-value=3.7e-17 Score=134.00 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=69.1
Q ss_pred EEeeeeeeec-CC-CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee-cCCCceeEEEEecC
Q 012222 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (468)
Q Consensus 21 k~G~L~~~k~-g~-~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~-~~~k~~~f~i~~~~ 97 (468)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..| .+.|.|..+..... ...+.++|.|. +
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~--~ 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVC--H 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEEC--C
Confidence 6899986643 23 5779999999999999999999987663 34566665432222 23456677775 3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 98 ~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
++.++|+|+|+|++|+++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 45599999999999999999999864
No 62
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.70 E-value=1.5e-16 Score=128.66 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=69.1
Q ss_pred EeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCc
Q 012222 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (468)
Q Consensus 22 ~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r 101 (468)
+||| .|.|...++|++|||||+++.|.||+++.+..+. +.|.|+|..+..+ ..+.++..|.|.. ..++
T Consensus 2 ~G~L--~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~-------~~G~I~L~~~~i~-~~~~~~~~F~i~~--~~~r 69 (91)
T cd01247 2 NGVL--SKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG-------CRGSIFLKKAIIA-AHEFDENRFDISV--NENV 69 (91)
T ss_pred ceEE--EEeccccCCCceEEEEEECCEEEEEecCccCcCC-------CcEEEECcccEEE-cCCCCCCEEEEEe--CCCe
Confidence 6966 5888889999999999999999999998764321 4567777776433 3334456777753 2359
Q ss_pred EEEEEeCCHHHHHHHHHHHHH
Q 012222 102 AFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 102 ~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
+|+|.|+|++|+++||+||++
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999975
No 63
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=1.7e-16 Score=136.55 Aligned_cols=100 Identities=26% Similarity=0.484 Sum_probs=75.6
Q ss_pred EEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee--cCCCceeEEEEecC
Q 012222 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLFPDG 97 (468)
Q Consensus 20 ~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~--~~~k~~~f~i~~~~ 97 (468)
.|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+. +.. ...+++||.|....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~ 68 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVS-IREVEDPSKPFCFELFSPS 68 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcE-EEEcccCCCCeeEEEECCc
Confidence 3789776 6777789999999999999999999987765 34566776543 322 23466778765433
Q ss_pred C------------------CCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcch
Q 012222 98 R------------------DGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131 (468)
Q Consensus 98 ~------------------~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~ 131 (468)
. ..++|+|+|+|++|+.+|++||+.++...+...
T Consensus 69 ~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~~~ 120 (125)
T cd01252 69 DKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPFYE 120 (125)
T ss_pred cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCchHH
Confidence 2 237899999999999999999999998665543
No 64
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.69 E-value=9.3e-17 Score=132.16 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=67.7
Q ss_pred EEeeeeeeecC-------CCcCCCeeEEEEEe-CCeEEEEecCC-CCCCCCCCccccccccEEecCCcceeecC---CCc
Q 012222 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (468)
Q Consensus 21 k~G~L~~~k~g-------~~~k~WkkRwfVL~-~~~L~yyk~~~-~~~~~~~~~~~~~l~~i~l~~~~~v~~~~---~k~ 88 (468)
++|||++...| ..+|+||||||||+ ++.|+||+++. +.. +.|.|+|+.|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 57999876544 24899999999998 56788887653 444 45688888888776432 233
Q ss_pred eeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 89 ~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
++|.|.. ..|+|+|.|+|++|+++|+.+|..
T Consensus 72 ~~f~I~t---p~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILT---PDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEEC---CCceEEEEeCCHHHHHHHHHHHHh
Confidence 5666643 479999999999999999999863
No 65
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.69 E-value=1.4e-16 Score=130.57 Aligned_cols=92 Identities=30% Similarity=0.394 Sum_probs=68.7
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCC------eEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCc--e
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK--L 89 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~------~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~--~ 89 (468)
.|+|+|||.++ |+|+||||||+++ .|.||++++.....+ ..+.+.|.|..|..|....+.+ +
T Consensus 1 ~v~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCe
Confidence 37899977543 7899999999987 799999987522100 1156789999998876543333 5
Q ss_pred eEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 90 ~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
+|.|. ++ .++|+|.|+|++|+++|+++|..
T Consensus 71 ~f~i~--t~-dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALY--TR-DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEE--eC-CceEEEEeCCHHHHHHHHHHHhh
Confidence 55554 33 58999999999999999999864
No 66
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.68 E-value=2e-16 Score=130.84 Aligned_cols=90 Identities=27% Similarity=0.497 Sum_probs=67.4
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeC--CeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC---------CCce
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---------DKKL 89 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~--~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~---------~k~~ 89 (468)
++|||+ |+|+..+.|++|||||++ +.|.||+++.+..| .+.|+|..+..+.... ...+
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------~g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---------KGCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---------ceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 489665 788889999999999984 49999999877664 3466666654443211 1234
Q ss_pred eEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 90 ~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
+|.+.. ..|+|+|+|++++|+.+||.||+++|
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 455432 47999999999999999999999875
No 67
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.68 E-value=3.1e-16 Score=143.30 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCCccCc---EeecCCHHHHHHH-HHHHhcCCCC-C--------CCCCChhHHHHHHHHHHhhCCCC
Q 012222 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRR-VQEYEQGKTE-F--------SADEDAHVIGDCVKHVLRELPSS 248 (468)
Q Consensus 182 ~il~~~i~~L~~~gl~~eGI---FR~~g~~~~v~~l-~~~~~~g~~~-~--------~~~~d~~~va~llK~fLr~LP~p 248 (468)
.+|..|.+.|+.+|+++++| ||.+++...++.+ +..|+.+... . ....|+|+++++||.++|.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 9999999999987 5556655211 1 23369999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCC
Q 012222 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (468)
Q Consensus 249 Ll~~-~~~~~~~~~~~~~~~~~~i~~l~~li~~~L-P~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~ 326 (468)
+++. +.|..|...-+..+ .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998643332 22347887664333 78899999999999999999999999999999999999999987
Q ss_pred C
Q 012222 327 L 327 (468)
Q Consensus 327 ~ 327 (468)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 5
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=3.1e-15 Score=123.79 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=69.7
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEe-CCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~-~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~ 97 (468)
|+|+||| .|+|+..+.|++|||+|+ ++.|.||++++...+. ..++++++.+..|..+.....+.++|.+....
T Consensus 1 v~k~G~L--~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWL--HKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEE--EeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 5799966 578888999999999999 7889999887643321 13356777777655433444555677775211
Q ss_pred ---CCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 98 ---~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 2235 44699999999999999876
No 69
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.61 E-value=5.3e-15 Score=119.58 Aligned_cols=91 Identities=27% Similarity=0.419 Sum_probs=67.4
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCC
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~ 100 (468)
++|||+ |+++..+.|++|||||+++.|+||+++.+..+ .+.+.|.|..+. +.....+.++|.|.. +++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~-------~~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRG-------KPRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCCC-------CceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 589775 55556689999999999999999999876510 134456666543 333334456777653 456
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHH
Q 012222 101 RAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 101 r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.60 E-value=4.2e-15 Score=124.47 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=63.8
Q ss_pred EEeeeeeeecCC----CcCCCeeEEEEEeCCe-------EEEEecCCCCCCCCCCccccccccEEecCCcceee-----c
Q 012222 21 KSGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----R 84 (468)
Q Consensus 21 k~G~L~~~k~g~----~~k~WkkRwfVL~~~~-------L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~-----~ 84 (468)
.+|||. |+|+ ..++|++|||||+++. |.||+++.+.. +.+.|+|..+..+.. .
T Consensus 1 ~eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~ 69 (108)
T cd01266 1 LEGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTA 69 (108)
T ss_pred Cceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEcccccccc
Confidence 379775 4554 3569999999999876 59999987766 445777776554422 1
Q ss_pred CCCc--eeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 85 EDKK--LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 85 ~~k~--~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
...+ +.|.+.. ..|+|+|.|+|++|+++||.+|+++
T Consensus 70 ~~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 70 GNCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred cCcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1122 3455442 4699999999999999999999764
No 71
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=1.9e-14 Score=117.04 Aligned_cols=91 Identities=23% Similarity=0.433 Sum_probs=62.8
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC--CCceeEEEEecCC
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPDGR 98 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~--~k~~~f~i~~~~~ 98 (468)
|+|||+++..+ ..+.|++|||||+++.|.||+++.+.... +.+.|.+..+....... .+.++|.|.. +
T Consensus 1 k~G~L~kk~~~-~~~~W~kr~~~L~~~~l~~y~~~~~~~~~-------~~~~i~l~~~~v~~~~~~~~~~~~f~i~~--~ 70 (94)
T cd01250 1 KQGYLYKRSSK-SNKEWKKRWFVLKNGQLTYHHRLKDYDNA-------HVKEIDLRRCTVRHNGKQPDRRFCFEVIS--P 70 (94)
T ss_pred CcceEEEECCC-cCCCceEEEEEEeCCeEEEEcCCcccccc-------cceEEeccceEEecCccccCCceEEEEEc--C
Confidence 58988743322 26889999999999999999998753111 22345554332111112 2567777764 2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 99 DGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 99 ~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
.++|+|+|+|.+|+.+|+.||+.
T Consensus 71 -~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 -TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred -CcEEEEECCCHHHHHHHHHHHhc
Confidence 38999999999999999999975
No 72
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=2.5e-14 Score=120.87 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=70.3
Q ss_pred EEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee------cCCCceeEEE
Q 012222 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (468)
Q Consensus 20 ~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~------~~~k~~~f~i 93 (468)
...|||......+..++|+||||||+|+.|+||+.+.+.. .. .+++.|+|..|..... ...+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~-----~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RK-----GPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cC-----CceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4579888655555789999999999999999999877632 11 2677888887665433 2355666766
Q ss_pred EecCCC----------------Cc-EEEEEeCCHHHHHHHHHHHHHH
Q 012222 94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 94 ~~~~~~----------------~r-~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
....+. .+ -|+|.|+|.+|+++|+.||+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 432221 12 2679999999999999999863
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=3e-14 Score=116.17 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=59.6
Q ss_pred cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC----CceeEEEEecCCCCcEEEEEeCC
Q 012222 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLTVLFPDGRDGRAFTLKAET 109 (468)
Q Consensus 34 ~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~----k~~~f~i~~~~~~~r~y~l~A~s 109 (468)
.++||+|||+|+++.|+||+++.. . +.+.|+|..+..|....+ ..++|.+.. ..++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt---~~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVC---EDDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEe---CCCeEEEECCC
Confidence 579999999999999999998653 2 466788887766653332 234666643 35899999999
Q ss_pred HHHHHHHHHHHHHH
Q 012222 110 SEDLYEWKTALELA 123 (468)
Q Consensus 110 ~~e~~~Wi~aI~~a 123 (468)
+.|+++||+||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 74
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.53 E-value=2.9e-14 Score=115.88 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=66.9
Q ss_pred EEeeeeeeecCCC-cCCCeeEEEEEeC----CeEEEEecCCCCCCCCCCccccccccEEecCCcceeec----CCCceeE
Q 012222 21 KSGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKKLLT 91 (468)
Q Consensus 21 k~G~L~~~k~g~~-~k~WkkRwfVL~~----~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~----~~k~~~f 91 (468)
+.|||. |+|+. .|.||+|||+|.+ +.|+||++.+++. +++.|++..+ .|.+. ..+++||
T Consensus 1 ~~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~-~V~~v~ds~~~r~~cF 68 (98)
T cd01245 1 KKGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDA-YLYPVHDSLFGRPNCF 68 (98)
T ss_pred CCCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeecccc-EEEEccccccCCCeEE
Confidence 358664 66666 8999999999987 8999999998877 4456666665 34332 2566899
Q ss_pred EEEecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 92 ~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
.+.... .+.+|+++|++ +|+++||++|++
T Consensus 69 el~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 69 QIVERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 886421 12689999999 999999999985
No 75
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.51 E-value=3.2e-14 Score=138.84 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=149.4
Q ss_pred CCccccchHHhhhc-----CCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCC--------------
Q 012222 163 SLVVGRPILLALED-----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-------------- 223 (468)
Q Consensus 163 ~~vFG~~L~~~~~~-----~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~-------------- 223 (468)
.++-|.++...... ....|.++...+.+.+.+|+.+||++|.++..++.+++++.-+.|+.
T Consensus 49 ~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k 128 (514)
T KOG4370|consen 49 KRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIK 128 (514)
T ss_pred ChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHH
Confidence 34556655544322 23478999999999999999999999999998777777666554320
Q ss_pred ---------------------------CCCCCCChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH
Q 012222 224 ---------------------------EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS 276 (468)
Q Consensus 224 ---------------------------~~~~~~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~ 276 (468)
....+..|.+||+|+|.|||+||+||++.++-..|..++.........+.++.
T Consensus 129 ~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ 208 (514)
T KOG4370|consen 129 RFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQF 208 (514)
T ss_pred HhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 01133578899999999999999999999999999999998888889999998
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHH
Q 012222 277 AILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356 (468)
Q Consensus 277 li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 356 (468)
++ +.||.+||.++.||+-|+-+|.+..-.|||++.||+|+.+|++--+
T Consensus 209 ll-k~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s------------------------------- 256 (514)
T KOG4370|consen 209 LL-KILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES------------------------------- 256 (514)
T ss_pred HH-HhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH-------------------------------
Confidence 65 7999999999999999999999999999999999999998876543
Q ss_pred HHHHHHHHHhcccccCCCCCcccc
Q 012222 357 AQAIIATLLEEYENIFDDESLHRC 380 (468)
Q Consensus 357 ~~~iv~~lI~~~~~iF~~~~~~~~ 380 (468)
+.++..|..|+..||++.....+
T Consensus 257 -~r~l~al~~h~q~lf~~v~l~~~ 279 (514)
T KOG4370|consen 257 -KRGLQALGLHLQTLFEMVRLMVC 279 (514)
T ss_pred -HHHHHHHHHHHHHHHhhheeeee
Confidence 25567777778888877654443
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.51 E-value=2.9e-13 Score=111.20 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=69.1
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee--ecCCCceeEEEEec
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~--~~~~k~~~f~i~~~ 96 (468)
++++|||++.. ...+.|++|||||+++.|+||+++.+.. .......+.+..+.+....... ......++|.+..
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~- 76 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITT- 76 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEE-
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEe-
Confidence 57999887555 5578999999999999999999987411 1111222233333333221110 1124556777765
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
+.+.+|+|+|+|++++.+|+.+|+.++
T Consensus 77 -~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 77 -PNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp -TTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 334699999999999999999999987
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.46 E-value=4.1e-13 Score=111.67 Aligned_cols=94 Identities=29% Similarity=0.411 Sum_probs=61.6
Q ss_pred Eeeeeeee------cCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeec--CCCceeEEE
Q 012222 22 SGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVL 93 (468)
Q Consensus 22 ~G~L~~~k------~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~--~~k~~~f~i 93 (468)
+|+|..+. +....+.|++|||||+++.|+||+++........+.. .|++..+...... ..++++|.+
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l 76 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL 76 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence 57666331 2233789999999999999999999865422211211 2333322111111 234466776
Q ss_pred EecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 94 ~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
.. +++++|+|+|++++++.+|+.+|+.
T Consensus 77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 77 RL--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 53 5789999999999999999999975
No 78
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.2e-13 Score=125.52 Aligned_cols=103 Identities=28% Similarity=0.436 Sum_probs=75.3
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee-ecCCCceeEEEEecC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPDG 97 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~-~~~~k~~~f~i~~~~ 97 (468)
..++|||.+. .|...+.||||||+|++++||||.--.+..|++ .|.+.+.+.-. .+..+++||.+....
T Consensus 260 pdREGWLlKl-gg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG---------IIpLeNlsir~VedP~kP~cfEly~ps 329 (395)
T KOG0930|consen 260 PDREGWLLKL-GGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG---------IIPLENLSIREVEDPKKPNCFELYIPS 329 (395)
T ss_pred ccccceeeee-cCCcccchhheeEEeecceeeeeeeccCCCCCc---------ceeccccceeeccCCCCCCeEEEecCC
Confidence 4789999755 333689999999999999999999888887654 44444432111 223566888775422
Q ss_pred C------------CC-------cEEEEEeCCHHHHHHHHHHHHHHHHhCCcch
Q 012222 98 R------------DG-------RAFTLKAETSEDLYEWKTALELALAQAPSAA 131 (468)
Q Consensus 98 ~------------~~-------r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~ 131 (468)
. +| ..|.++|.+.+|+.+||++|+.++.+-|--.
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy~ 382 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFYE 382 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHHH
Confidence 1 22 3699999999999999999999998766443
No 79
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=1.7e-12 Score=109.28 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred EEeeeeeee----cCC----CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCc-ceeecCCCceeE
Q 012222 21 KSGPLFISS----KGI----GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG-SVVVREDKKLLT 91 (468)
Q Consensus 21 k~G~L~~~k----~g~----~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~-~v~~~~~k~~~f 91 (468)
|+|+|..+- .|. ..+.|+++||||+|+.|++||++...... ....-....|.|..+. .+.. +.++..+
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~--~~~~~~~~~Isi~~a~~~ia~-dy~Kr~~ 78 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS--LSETELKNAISIHHALATRAS-DYSKKPH 78 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc--cccccccceEEeccceeEeec-cccCCCc
Confidence 678776431 111 25789999999999999999998642211 0000012346666655 3333 2333344
Q ss_pred EEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 92 ~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
++.+..++++.|+|||.+.+||+.||.+|+.+..
T Consensus 79 VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 79 VFRLRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5555567889999999999999999999999875
No 80
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.39 E-value=1.8e-12 Score=109.03 Aligned_cols=98 Identities=33% Similarity=0.524 Sum_probs=49.4
Q ss_pred EEeeeeeeecCCC-cCCCeeEEEEEe-CCeEEEEecCCCCCCCC--C--CccccccccEEecC-Ccceee-------cCC
Q 012222 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNN-SGSVVV-------RED 86 (468)
Q Consensus 21 k~G~L~~~k~g~~-~k~WkkRwfVL~-~~~L~yyk~~~~~~~~~--~--~~~~~~l~~i~l~~-~~~v~~-------~~~ 86 (468)
|+|||| |++.. .+.||+|||+|. ++.|.|||.+.+..... + ....+..+...... ...... ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689776 66665 899999999999 99999999943321000 0 00000111111111 000000 001
Q ss_pred CceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 87 k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
....+.+. +..++|+|.|+|.+|+.+|++||++|
T Consensus 79 ~~~~~~i~---T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIF---TPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE----SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEE---CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 11223332 23689999999999999999999875
No 81
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=3.1e-12 Score=104.12 Aligned_cols=91 Identities=21% Similarity=0.360 Sum_probs=66.2
Q ss_pred cCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEe-cCCCCcEEEEEeC
Q 012222 30 KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DGRDGRAFTLKAE 108 (468)
Q Consensus 30 ~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~-~~~~~r~y~l~A~ 108 (468)
+....|+||+|||+|+++.|+|||++.+.. +.+.+.+.+.++.+.....| ..+++++.+.. .....++|+|.|+
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEECC
Confidence 444578899999999999999999987754 33445556666666654322 23456665543 2334489999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012222 109 TSEDLYEWKTALELALA 125 (468)
Q Consensus 109 s~~e~~~Wi~aI~~ai~ 125 (468)
|++++.+||+|++.|..
T Consensus 88 sEeqya~Wmaa~rlas~ 104 (106)
T cd01237 88 NEKQYAKWMAACRLASK 104 (106)
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 99999999999998753
No 82
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.36 E-value=5.2e-12 Score=100.11 Aligned_cols=86 Identities=27% Similarity=0.475 Sum_probs=61.6
Q ss_pred eeeeeeecCCCcCCCeeEEEEE--eCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCC
Q 012222 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (468)
Q Consensus 23 G~L~~~k~g~~~k~WkkRwfVL--~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~ 100 (468)
|||.+++ +...++|+|||||| ..+.|.||+++.+.. .-|.|++..+ .++... +...+.|. ...
T Consensus 1 G~llKkr-r~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a-~is~~~-~~~~I~id---sg~ 65 (89)
T PF15409_consen 1 GWLLKKR-RKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLA-VISANK-KSRRIDID---SGD 65 (89)
T ss_pred Ccceeec-cccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccce-EEEecC-CCCEEEEE---cCC
Confidence 7775443 33589999999999 899999999876653 2345555543 232322 33344443 246
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHH
Q 012222 101 RAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 101 r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.+|+|.|.|++|.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999875
No 83
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.35 E-value=5.9e-12 Score=107.40 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=58.4
Q ss_pred CCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeec--------------CCCceeEEEEecCCCCc
Q 012222 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (468)
Q Consensus 36 ~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~--------------~~k~~~f~i~~~~~~~r 101 (468)
+|++|||||+++.|.||+++.+.. +++.|.++....|... ..+++.|.+.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 799999999999999999988765 4556666554444322 23455666643 579
Q ss_pred EEEEEeCCHHHHHHHHHHHHHH
Q 012222 102 AFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 102 ~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 84
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.27 E-value=4.5e-11 Score=98.70 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=67.7
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee-cCCCceeEEEEecC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~-~~~k~~~f~i~~~~ 97 (468)
.+|+||| .|.+...+.|+.|||+|-++.|.|++..... .+..+. ..+.|.+........ ....+++|.|..
T Consensus 2 ~ikeG~L--~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~---~~~~y~-~~~~i~l~~~~v~~~~~~~~~~~F~I~~-- 73 (101)
T cd01219 2 LLKEGSV--LKISSTTEKTEERYLFLFNDLLLYCVPRKMI---GGSKFK-VRARIDVSGMQVCEGDNLERPHSFLVSG-- 73 (101)
T ss_pred cccceEE--EEEecCCCCceeEEEEEeCCEEEEEEccccc---CCCcEE-EEEEEecccEEEEeCCCCCcCceEEEec--
Confidence 4799966 5777767899999999999999999864221 111111 233455544221111 233456777754
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 98 ~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
..++|+++|+|++|+.+|++||+.||.
T Consensus 74 -~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 74 -KQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred -CCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 238999999999999999999999985
No 85
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.25 E-value=1.2e-11 Score=131.52 Aligned_cols=146 Identities=22% Similarity=0.302 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHcCCCccCcEe-ecCCHHHHHHHHHHHhcCCCCC--CCCCChhHHHHHHHHHHhhCCCC-CCChhh
Q 012222 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (468)
Q Consensus 179 ~vP~il~~~i~~L~~~gl~~eGIFR-~~g~~~~v~~l~~~~~~g~~~~--~~~~d~~~va~llK~fLr~LP~p-Ll~~~~ 254 (468)
.||.++..|+.+++.+|+..+|||| +++....+...+.++.+|.... ..+.+... |.++|.|+|.|.+| .|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4999999999999999999999999 8999999999999999994322 23345555 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccCCC
Q 012222 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (468)
Q Consensus 255 ~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~ 326 (468)
+..++.+....+.-+++..++.++ ..+|..+..++.+++.|+.+.++.+..|.|++.|+|+||||.++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L-~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLL-KSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhh-hccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 999999988888778878888867 58999999999999999999999999999999999999999997644
No 86
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.23 E-value=3.1e-11 Score=102.74 Aligned_cols=104 Identities=24% Similarity=0.361 Sum_probs=59.1
Q ss_pred EEeeeeee------ecCC--CcCCCeeEEEEEeCCeEEEEecCCCCCCCCC-----CccccccccEEecCCcceeecCCC
Q 012222 21 KSGPLFIS------SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRG-----GEVNLTLGGIDLNNSGSVVVREDK 87 (468)
Q Consensus 21 k~G~L~~~------k~g~--~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~-----~~~~~~l~~i~l~~~~~v~~~~~k 87 (468)
|+|||..+ .+.. ..++|+..|+||+|+.|++||+......... .+-.-+...|.|..+......+.+
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 78988744 1112 4678999999999999999999532111110 111113445777665443333333
Q ss_pred ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
+..+++.+...+|..|+|||.|++||.+||++|+.+.
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 3444444455789999999999999999999998764
No 87
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.17 E-value=4e-10 Score=91.10 Aligned_cols=97 Identities=33% Similarity=0.507 Sum_probs=68.1
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC----CCceeEEEE
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~----~k~~~f~i~ 94 (468)
++++|||++...+ ....|++|||+|.++.|.||+++....+ . -....|.+..+....... ...++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~-----~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-Y-----KPKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-C-----CCceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689988754443 4678999999999999999998765321 1 133455666552221222 245677776
Q ss_pred ecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 95 ~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
. ..+.+|+|+|+|++|+..|+.+|+.++
T Consensus 74 ~--~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 T--ADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred e--cCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4 334589999999999999999999876
No 88
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.11 E-value=5.6e-10 Score=88.17 Aligned_cols=99 Identities=30% Similarity=0.416 Sum_probs=71.5
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecC-
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG- 97 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~- 97 (468)
|++.|||-+...|..+..=|+|||||+..+|+|||+..+..|++ -++|.++.+..+..- --.+++||.++...
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~ky----ilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKY----MLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccc----eeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 57899987766655455569999999999999999998877543 245566666554321 13456888876322
Q ss_pred ----CCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 98 ----RDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 98 ----~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.+.++.-|.|+|++|++.|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 23467899999999999999887654
No 89
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.02 E-value=2.5e-09 Score=86.86 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=63.0
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCC--eEEEEecCCCC-CCCCCCccccccccEEecCCcce-eecCCCceeEEEEec
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSA-LPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVLFPD 96 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~--~L~yyk~~~~~-~~~~~~~~~~~l~~i~l~~~~~v-~~~~~k~~~f~i~~~ 96 (468)
|+||||++.+++....|.|.||...+. .+.+---.... .+.++ .+. .-..+.|..|..- ....+++|||.+...
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g-~v~-~~e~~~l~sc~~r~~~~~dRRFCFei~~~ 78 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKG-AVA-QDETLTLKSCSRRKTESIDKRFCFDVEVE 78 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCc-ccc-cceEEeeeeccccccCCccceeeEeeeec
Confidence 689999998887777999999998764 43222111110 11111 111 1123444444322 234689999999765
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHH
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALE 121 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~ 121 (468)
... .++.|||+|+.++..||.|+.
T Consensus 79 ~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 79 EKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCC-CeEEEEecCHHHHHHHHHhhc
Confidence 544 469999999999999999974
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.00 E-value=1.7e-09 Score=86.40 Aligned_cols=94 Identities=32% Similarity=0.538 Sum_probs=63.6
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC--CceeEEEEecCC
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~--k~~~f~i~~~~~ 98 (468)
++|||+....+. ...|++|||+|.++.|.+|+....... . ...+.+.+..+........ ..++|.+.. .
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~~-~-----~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~--~ 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKKS-Y-----KPKGSIPLSGAEVEESPDDSGRKNCFEIRT--P 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCcC-C-----CCcceEEcCCCEEEECCCcCCCCcEEEEec--C
Confidence 479886444332 478999999999999999998765310 0 1233455555322222222 356777765 3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 99 DGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 99 ~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.++.|+|+|+|++|+..|+.+|+.+
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 3489999999999999999999753
No 91
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.00 E-value=3.9e-09 Score=84.95 Aligned_cols=93 Identities=29% Similarity=0.482 Sum_probs=64.0
Q ss_pred EeeeeeeecCC--CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC---CCceeEEEEec
Q 012222 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVLFPD 96 (468)
Q Consensus 22 ~G~L~~~k~g~--~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~---~k~~~f~i~~~ 96 (468)
+|||.+...+. ....|++|||+|.++.|.||+.+.+..+.. ..+.+.... +.... ...++|.+...
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~l~~~~-v~~~~~~~~~~~~F~i~~~ 72 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP--------GSIPLSEIS-VEEDPDGSDDPNCFAIVTK 72 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC--------CEEEccceE-EEECCCCCCCCceEEEECC
Confidence 68775444332 247899999999999999999987655321 123333332 22222 34677877653
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
....+.|+|+|+|.+|+..|+.+|+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 73 DRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 223689999999999999999999863
No 92
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.98 E-value=4.8e-10 Score=89.31 Aligned_cols=98 Identities=19% Similarity=0.385 Sum_probs=66.3
Q ss_pred EEEeeeeeeecCC-CcCCCeeEEEEEeCCe-----EEEEecCCCCCCCCCCccccccccEEecCCcceee-------cCC
Q 012222 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (468)
Q Consensus 20 ~k~G~L~~~k~g~-~~k~WkkRwfVL~~~~-----L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~-------~~~ 86 (468)
.++|||+ +.|+ .+|.||||||||.+-+ +.-|+.++. .+...+.|.++.++.+..... ...
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899776 6665 6999999999999653 333443322 122335777888877654331 123
Q ss_pred CceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 87 k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
.+++|... +.|-+..|..+++.|+.-||+|+-+|..++
T Consensus 76 g~~ff~av---kegd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAV---KEGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhhee---ccCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 34444332 246789999999999999999999988764
No 93
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.96 E-value=1e-09 Score=105.42 Aligned_cols=107 Identities=18% Similarity=0.292 Sum_probs=79.6
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEe-CCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEE
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~-~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~ 94 (468)
...|+|+||| .|+|...|+|+.|||+|. ++.|.=|++++... .....+|..+.+..|..+.....++..|+|.
T Consensus 12 ~~~vvkEgWl--hKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~----~~~p~pLNnF~v~~cq~m~~erPrPntFiiR 85 (516)
T KOG0690|consen 12 QEDVVKEGWL--HKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV----QPTPEPLNNFMVRDCQTMKTERPRPNTFIIR 85 (516)
T ss_pred hhhhHHhhhH--hhcchhhhcccceEEEEeeCCceEeeccCCccC----CCCcccccchhhhhhhhhhccCCCCceEEEE
Confidence 4579999966 599999999999999995 67888888764432 1222367788888887776667777777663
Q ss_pred -ecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCC
Q 012222 95 -PDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (468)
Q Consensus 95 -~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p 128 (468)
+..+.--..+|.+++.+++++|+.||+.+....+
T Consensus 86 cLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~ 120 (516)
T KOG0690|consen 86 CLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLK 120 (516)
T ss_pred eeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence 2233334567899999999999999999886544
No 94
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.90 E-value=1.8e-08 Score=82.64 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=57.0
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee-ecC--CCceeEEEEe
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VRE--DKKLLTVLFP 95 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~-~~~--~k~~~f~i~~ 95 (468)
.+++|+|.+..+ +..|+|+||.+.+-.||+.+...+. ..+. ..+.+.+.... |. ..+ ..+++|.|..
T Consensus 2 ~ikEG~L~K~~~---k~~~~R~~FLFnD~LlY~~~~~~~~-----~~y~-~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~ 71 (99)
T cd01220 2 FIRQGCLLKLSK---KGLQQRMFFLFSDLLLYTSKSPTDQ-----NSFR-ILGHLPLRGML-TEESEHEWGVPHCFTIFG 71 (99)
T ss_pred eeeEEEEEEEeC---CCCceEEEEEccceEEEEEeecCCC-----ceEE-EEEEEEcCceE-EeeccCCcCCceeEEEEc
Confidence 589998864433 2356666665555444444432211 1111 23344444432 21 111 3457888863
Q ss_pred cCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 96 ~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
..+.|.|+|.|++|+.+|+++|+++|.
T Consensus 72 ---~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 ---GQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ---CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999985
No 95
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.87 E-value=7.5e-09 Score=84.42 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=62.4
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCcccccccc--EEecCCcceeecCCCceeEEEEecCC
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVLFPDGR 98 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~--i~l~~~~~v~~~~~k~~~f~i~~~~~ 98 (468)
.+|+||++.-| .|+|||+||+|++..|+|+-..+...++.-.-+ ..+.+ +...-...-....+..++|.+.+...
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl-~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACL-NLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHHHH-HhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 47999977665 589999999999999999865444332210000 01111 11111111112234557888855321
Q ss_pred ----CCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 99 ----DGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 99 ----~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
..-.-+|+|++++.+..|+.|||-+-
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 12357899999999999999999664
No 96
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.83 E-value=4e-08 Score=81.31 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=70.6
Q ss_pred EEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCc--ccccc--ccEEecCCcc--ee--ecCCCceeE
Q 012222 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE--VNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (468)
Q Consensus 20 ~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~--~~~~l--~~i~l~~~~~--v~--~~~~k~~~f 91 (468)
..+|||...+.++.+++|+|+|.||.+..|++|..+.+........ ..+.+ +.+.++.+.. |. .+.+-++.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 4699998888877778999999999999999998876554322222 22222 2333332221 11 224555677
Q ss_pred EEEec----CCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 92 VLFPD----GRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 92 ~i~~~----~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.++.. ...+++.+|-|+|+.|.++|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 77542 224578999999999999999999864
No 97
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.78 E-value=6.6e-08 Score=78.82 Aligned_cols=103 Identities=13% Similarity=0.274 Sum_probs=68.8
Q ss_pred EEeeeeeeecCCC--cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccc-cEEecCCcc--ee--ecCCCceeEEE
Q 012222 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VV--VREDKKLLTVL 93 (468)
Q Consensus 21 k~G~L~~~k~g~~--~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~-~i~l~~~~~--v~--~~~~k~~~f~i 93 (468)
.+|||-..+.++. .++|+++|.||.+..|++|..+.+..... +...+.++ .+.++.+++ |. ...+-++.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5898876666554 46999999999999999999877653221 11111111 122222111 11 22455567877
Q ss_pred EecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 94 ~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
.. .+.+++.+|-|+++.|.+.|+.+|.+-|.
T Consensus 81 ~~-~~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LY-ANEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred Ee-CCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 75 34469999999999999999999998764
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.77 E-value=2.4e-09 Score=114.16 Aligned_cols=94 Identities=27% Similarity=0.519 Sum_probs=74.3
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEe--CCeEEEEecCCCCCCCCCCccccccccEEecCCcceee---c-CCCcee
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKLL 90 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~--~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~---~-~~k~~~ 90 (468)
.+.+.+|||| |+|.+.|.||.|||||. ...|+||.+-.+++|+ |.|++....+|.. + .+.+.+
T Consensus 1632 eNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pk---------G~IdLaevesv~~~~~k~vdekgf 1700 (1732)
T KOG1090|consen 1632 ENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPK---------GCIDLAEVESVALIGPKTVDEKGF 1700 (1732)
T ss_pred cccCcccchh--hcchhhcccccceeEecCCccceeeeccccccccc---------chhhhhhhhhhcccCccccCccce
Confidence 3456799777 89999999999999996 4689999998888854 4777777666643 2 244445
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
|.+.. ..|+|-|+|.+...+++|++.|+.++
T Consensus 1701 fdlkt---t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1701 FDLKT---TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeeh---hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 66543 46899999999999999999999886
No 99
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.67 E-value=1.9e-08 Score=104.03 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=136.9
Q ss_pred CCCccccchHHhhhcCCCCCHHHHHHHHHHHHcCCCccCcEeecCCHHHHH----HHHHHH-hcCCCCCCCCCChhHHHH
Q 012222 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVD----RRVQEY-EQGKTEFSADEDAHVIGD 236 (468)
Q Consensus 162 ~~~vFG~~L~~~~~~~~~vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~----~l~~~~-~~g~~~~~~~~d~~~va~ 236 (468)
+..-||+||+..+.+++.+|..+......|.+.+..++++||..-...-+. .....+ ..|.....+...+|.+++
T Consensus 413 ~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~taas 492 (741)
T KOG4724|consen 413 AKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTAAS 492 (741)
T ss_pred hhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHHHH
Confidence 456899999999999999999998888889999999999999844333222 222223 335666666779999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHhcCChhHHHHHHHHHHHHHHHHhhhccCCC
Q 012222 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (468)
Q Consensus 237 llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~-------li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 309 (468)
++|.|+|++|..++..+...+++++.....++++.++++. ......|..+..+....+.-.+.+..++..+.|
T Consensus 493 v~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~ 572 (741)
T KOG4724|consen 493 VHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSN 572 (741)
T ss_pred HHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccc
Confidence 9999999999999999999999999998888889999986 123678888888888888888888899999999
Q ss_pred CccccchhccccccCCC
Q 012222 310 TPSAVAACMAPLLLRPL 326 (468)
Q Consensus 310 ~~~nLA~vfaP~Ll~~~ 326 (468)
+..|++.|..|+++.-.
T Consensus 573 dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 573 DSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccCCCCCccccchh
Confidence 99999999999998754
No 100
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.49 E-value=8.6e-07 Score=72.85 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEeCC-eEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEE
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~-~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~ 94 (468)
+..++++|++.++ ++.. +|+|||+|+++ .|+|+...... ..|.|.++....+.....+ .+++.+
T Consensus 10 ge~Il~~g~v~K~--kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~~~-~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVKKR--KGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKSFK-TFFIHT 74 (104)
T ss_dssp T--EEEEEEEEEE--ETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECSSS-EEEEEE
T ss_pred CCeEEEEEEEEEe--eceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEccCC-EEEEEC
Confidence 4689999977533 3333 89999999988 66666554332 3577888877777665444 344445
Q ss_pred ecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 95 ~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
+ +|+|+|... ...+..|+++|+.+..+
T Consensus 75 p----~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P----KRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T----TEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred C----CcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 4 899999884 57799999999998865
No 101
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.48 E-value=1.3e-06 Score=89.09 Aligned_cols=147 Identities=12% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHcCCCccCcE---eecCCHHHHHHHHHHH-hcCCCC----------CCCCCChhHHHHHHHHHHhhC
Q 012222 180 GPSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLREL 245 (468)
Q Consensus 180 vP~il~~~i~~L~~~gl~~eGIF---R~~g~~~~v~~l~~~~-~~g~~~----------~~~~~d~~~va~llK~fLr~L 245 (468)
|=.+|..|.+.|..+|+++++|| |-.-+...++.+...| ..+... .....++|+++++||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 33578899999999999999998 6777888887766654 444321 123469999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhhccCCCCccccchhccccccC
Q 012222 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (468)
Q Consensus 246 P~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP-~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~ 324 (468)
|..+++.+.|..|...-+..+ -...++..+|-..|| +.|..++.-++.+|..|+.|+..|+|+..-||-.+|+-.|-
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~ 165 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFG 165 (420)
T ss_pred CCCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCC
Confidence 999999999999987644332 224566666656674 66788999999999999999999999999999999999998
Q ss_pred CCCC
Q 012222 325 PLLA 328 (468)
Q Consensus 325 ~~~~ 328 (468)
....
T Consensus 166 ~~~~ 169 (420)
T PF08101_consen 166 HPDF 169 (420)
T ss_pred CCCc
Confidence 7753
No 102
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.40 E-value=4.4e-07 Score=97.30 Aligned_cols=104 Identities=26% Similarity=0.414 Sum_probs=76.5
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC------CCcee
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLL 90 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~------~k~~~ 90 (468)
..|.-.|+|++-.-+.....|.||||+|.|+.+.|+|.+.+.+ .++ +++.|+|+.|++-.... .+.+-
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~-----Pig~IDLt~CTsq~ie~a~rdicar~nt 1061 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKV-----PIGQIDLTKCTSQSIEEARRDICARPNT 1061 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccC-----cceeeehhhhhccccccchhhhccCCce
Confidence 3567779998877776678899999999999999999988876 332 77889999887543221 22334
Q ss_pred EEEEe-----cCC-----CCc-EEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 91 TVLFP-----DGR-----DGR-AFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 91 f~i~~-----~~~-----~~r-~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
|.|.. .+. ..| ...|.|+|.++++.|+.+|..++..
T Consensus 1062 Fhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1062 FHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred eEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 44431 000 112 5889999999999999999998864
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.39 E-value=5.6e-07 Score=94.10 Aligned_cols=113 Identities=27% Similarity=0.380 Sum_probs=74.8
Q ss_pred ceEEEeeeeeeecCCC---cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC----Ccee
Q 012222 18 TVFKSGPLFISSKGIG---WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLL 90 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~---~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~----k~~~ 90 (468)
.|.|+|.+++..+|.+ .+++|||||-|++..|.|.|++... +.+.|.+.++.+|..-++ .+++
T Consensus 564 ~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~knv 633 (800)
T KOG2059|consen 564 VVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMKNV 633 (800)
T ss_pred ceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCCce
Confidence 4555565544433322 4788999999999999999997653 345677777666653333 3345
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcchhccCCCCccCCCC
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~~~~~~~~~~~~~~~ 144 (468)
|.+.. ++ |+.|+||.+..|..+|+++|+++...++..=. .-+.|.|..+.
T Consensus 634 ~qVV~--~d-rtly~Q~~n~vEandWldaL~kvs~~N~~rLa-s~HPgaF~s~~ 683 (800)
T KOG2059|consen 634 FQVVH--TD-RTLYVQAKNCVEANDWLDALRKVSCCNQNRLA-SYHPGAFRSDS 683 (800)
T ss_pred EEEEe--cC-cceeEecCCchHHHHHHHHHHHHhccCcchhh-hcCCcccccCc
Confidence 54443 22 79999999999999999999998876543211 12345555543
No 104
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=98.20 E-value=3.6e-06 Score=85.39 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccc-cccccEEecCCcceeecCCCceeEEEE
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN-LTLGGIDLNNSGSVVVREDKKLLTVLF 94 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~-~~l~~i~l~~~~~v~~~~~k~~~f~i~ 94 (468)
.+...++|+||++..| +|+|||.||||+...|||+-..+...|+.-..+. +.-..|...-...-..+....++|-|.
T Consensus 314 ~~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence 3456889999876665 5899999999999999999766555544211110 011111111111111122333566555
Q ss_pred ecCC-CC--cEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 95 PDGR-DG--RAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 95 ~~~~-~~--r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
+..- .. -.-+|||+++..+..|+.|||-+-.
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 4221 11 2357999999999999999997654
No 105
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.16 E-value=8.1e-06 Score=67.17 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred EEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeec-------CCCceeEE
Q 012222 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLTV 92 (468)
Q Consensus 20 ~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~-------~~k~~~f~ 92 (468)
+|+||+---. ..-+.|||+|++|....|.+|+++...+ ..+.|.|+.+..|... ....+||.
T Consensus 1 lkEGWmVHyT--~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMVHYT--SSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEEEEe--cCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4799873211 1236899999999999999999988766 3445555555544322 34568999
Q ss_pred EEecCCCCcEEEEEeC--------------------CHHHHHHHHHHHHHH
Q 012222 93 LFPDGRDGRAFTLKAE--------------------TSEDLYEWKTALELA 123 (468)
Q Consensus 93 i~~~~~~~r~y~l~A~--------------------s~~e~~~Wi~aI~~a 123 (468)
|.. ...+|+.+.+ ..+.++.|-.||+.|
T Consensus 70 i~T---~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRT---TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEe---cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 875 4688998774 234568899998864
No 106
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.13 E-value=1.3e-05 Score=85.48 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=72.3
Q ss_pred CceEEEeeeeeeecCCC-cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC----CceeE
Q 012222 17 NTVFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT 91 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~-~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~----k~~~f 91 (468)
..+.++||||.-..... ..--++|||||.+..|.|||.++... + ++++...+.....|....- .+-.|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-----~--~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-----Q--VPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-----c--ccceeeccCCCceEeecCceEEcCceEE
Confidence 35789999996544333 44559999999999999999865432 1 3555555555555543221 12245
Q ss_pred EEEec--CCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 92 VLFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 92 ~i~~~--~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
++... ....+...|.|-|.+|+.+|++||+.|+.+.
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 55443 3334678999999999999999999999975
No 107
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.10 E-value=3.9e-05 Score=63.30 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=61.8
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecC
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~ 97 (468)
..+++|-|.+.- ++.-+.|||.|=++.|.|-+--.... .-.....+++.++.+.+.. .....+..|.|..
T Consensus 3 ~li~eG~L~K~~----rk~~~~R~ffLFnD~LvY~~~~~~~~-~~~~~~~i~L~~~~v~~~~---d~~~~~n~f~I~~-- 72 (104)
T cd01218 3 VLVGEGVLTKMC----RKKPKQRQFFLFNDILVYGNIVISKK-KYNKQHILPLEGVQVESIE---DDGIERNGWIIKT-- 72 (104)
T ss_pred EEEecCcEEEee----cCCCceEEEEEecCEEEEEEeecCCc-eeeEeeEEEccceEEEecC---CcccccceEEEec--
Confidence 468899775333 45678899999999999954311100 0000111344444443321 1122345676653
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 98 ~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
..+.|.++|+|++|..+|+++|..|+.+
T Consensus 73 -~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 73 -PTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999975
No 108
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.08 E-value=4e-05 Score=64.01 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=65.2
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCC-C--CCccc----cccccEEecCCcceeecCCCcee
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ-R--GGEVN----LTLGGIDLNNSGSVVVREDKKLL 90 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~-~--~~~~~----~~l~~i~l~~~~~v~~~~~k~~~ 90 (468)
-.+++|-| ++-+...+.++.|+|.|=++.|.|-|........ | +..+. +.+..+.+..... .+.-++.
T Consensus 3 elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kna 77 (112)
T cd01261 3 EFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNA 77 (112)
T ss_pred cccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCce
Confidence 46789955 4555445778999999999999999865432111 1 11221 2223333332110 1122466
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
|.|.. .+++.|.|+|.|++|..+|+++|..++.+
T Consensus 78 F~I~~--~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 78 FEIIL--KDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEEc--CCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 77754 23578999999999999999999998864
No 109
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.97 E-value=3.4e-05 Score=63.68 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=61.7
Q ss_pred EeeeeeeecC--CCcCCCeeEEEEEeCCeEEEEecCCCCCC-CCCCccccccc--cEEecCCccee-ecCCCceeEEEEe
Q 012222 22 SGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG--GIDLNNSGSVV-VREDKKLLTVLFP 95 (468)
Q Consensus 22 ~G~L~~~k~g--~~~k~WkkRwfVL~~~~L~yyk~~~~~~~-~~~~~~~~~l~--~i~l~~~~~v~-~~~~k~~~f~i~~ 95 (468)
-|||.-+-.+ ...+.||.||++|++..|+.|+..+-... ...+....++. ...+....... ...++.+||.+..
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 4877533222 24689999999999999999999764221 11222222222 11111111100 0125667888875
Q ss_pred cCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 96 DGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 96 ~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
-+. -..++|..++..|+..|..||..
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 322 27899999999999999999864
No 110
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=9.2e-06 Score=82.98 Aligned_cols=102 Identities=27% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCceEEEeeeeee-------ecC-CCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee-----
Q 012222 16 SNTVFKSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV----- 82 (468)
Q Consensus 16 ~~~v~k~G~L~~~-------k~g-~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~----- 82 (468)
+..+-|.|.|-.+ ||. ..+++||..|-||+|..||+-|++-... + .+..-+|.+..+|+
T Consensus 503 sa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~--k------alse~~lknavsvHHALAt 574 (774)
T KOG0932|consen 503 SAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPG--K------ALSESDLKNAVSVHHALAT 574 (774)
T ss_pred CchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcc--c------chhhhhhhhhhhhhhhhcC
Confidence 4467899977432 121 1267899999999999999998753211 1 22333344433332
Q ss_pred -ecCCCceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 83 -VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 83 -~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
..+.++..|++.++..+.|+|+|||.+.+||+.||..|.-+..
T Consensus 575 ~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 575 PATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred CCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 1233444566767778899999999999999999999987654
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.79 E-value=6.5e-05 Score=79.48 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=61.1
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEE-ecCCCCCCCCCCccccccccEEecCCcceee--cCCCceeEE
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFF-KNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yy-k~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~--~~~k~~~f~ 92 (468)
...+.+.|||+ +.+... .|++|||.+.++.+... +..+........ .+....+..+..+.. ...+.++|.
T Consensus 374 ~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 34678899775 444434 49999999987765554 322221100000 111222333333311 123456777
Q ss_pred EEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 93 i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
+.. +.++.++|.|+|++++++|+.+|+.++.
T Consensus 447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 643 4577899999999999999999999873
No 112
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.72 E-value=1.9e-05 Score=86.89 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=70.8
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEec
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~ 96 (468)
......|+||++... ..+.|+||||-..++.+.|+..-.+... .+...+..+.+..+. ...++++||.|..
T Consensus 272 ~~~~~~~~l~~k~~~-~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~---~~~drr~CF~iiS- 342 (785)
T KOG0521|consen 272 LGYRMEGYLRKKASN-ASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDA---EQRDRRFCFEIIS- 342 (785)
T ss_pred chhhhhhhhhhhccc-chhhHHhhhhhhhccccccccccccccc----cccccchhccccCCc---ccccceeeEEEec-
Confidence 345667766633333 4789999999999999999987655432 122233344443321 2237889998865
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
..++|.|||+++.+...||.+|++.+..+
T Consensus 343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 --PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999764
No 113
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.55 E-value=0.00016 Score=58.70 Aligned_cols=96 Identities=22% Similarity=0.340 Sum_probs=65.0
Q ss_pred ceEEEeeeeeeecC-CCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee---cCCCceeEEE
Q 012222 18 TVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVL 93 (468)
Q Consensus 18 ~v~k~G~L~~~k~g-~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~---~~~k~~~f~i 93 (468)
.++..||+ .|-| .....|++|||-|-++.|-+|-...+..| + -+.+.....|.+ .-....|..+
T Consensus 2 DcIvhGyi--~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~----e------Li~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHGYI--KKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP----E------LITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEeeeh--hhhCCHHHHHHHHHHheeCcceeeecccccccCC----c------EEEeehhhhcchhheeeccCceEEE
Confidence 57889955 4554 44788999999999999999754433221 1 233333332221 1122346666
Q ss_pred EecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 94 ~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
.. .+++.+++.++++-+..+|...|+.+.+.|
T Consensus 70 k~--k~~~k~vlt~~d~i~l~qW~~elr~a~r~S 101 (116)
T cd01240 70 KI--RDEKKIVLTNSDEIELKQWKKELRDAHRES 101 (116)
T ss_pred EE--cCCceEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 55 447789999999999999999999988754
No 114
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.43 E-value=0.00011 Score=76.88 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=66.4
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEec
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~ 96 (468)
....|+| |.++.+...|.|+|||||++.+.+.||+.+.+......+.+.+.-+.+.+.. .....|.+..
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~- 315 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLIT- 315 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhh-
Confidence 4668899 4456667789999999999999999999876654333222222222222221 1122232221
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcc
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~ 130 (468)
...+|+|.+++..-..+|+..|+.+|.-..++
T Consensus 316 --~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~ 347 (936)
T KOG0248|consen 316 --STDKMNFMTESERTTHDWVTILSAAIKATTLR 347 (936)
T ss_pred --hceeEEEeccChhhhhhhHHHHHHHHHHHhcc
Confidence 23679999999999999999999999754433
No 115
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.43 E-value=5.9e-05 Score=77.38 Aligned_cols=97 Identities=28% Similarity=0.379 Sum_probs=66.0
Q ss_pred ceEEEeeeeeeecCC---CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecC------CCc
Q 012222 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKK 88 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~---~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~------~k~ 88 (468)
....+|-| +.|.+ ..|+|+.|||.|.+..|.|-|....... .-..|+++...+|.... .-+
T Consensus 734 qp~iEGQL--KEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslp 803 (851)
T KOG3723|consen 734 QPLIEGQL--KEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLP 803 (851)
T ss_pred Cchhcchh--hhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccc
Confidence 44778844 43333 3789999999999999999776533221 11246666655554111 112
Q ss_pred eeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 89 ~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
..|.|+. ...+|.|+|.++.-+.+|++.|.-|+..+
T Consensus 804 KAFEIFT---AD~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 804 KAFEIFT---ADKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hhhheee---cCceEEeecccccCHHHHHHHHHHHHHHH
Confidence 3677765 35779999999999999999999888654
No 116
>PLN02866 phospholipase D
Probab=97.36 E-value=0.0016 Score=72.71 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=56.6
Q ss_pred CCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEec--C------Ccceee------cCCCceeEEEEecCCCC
Q 012222 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN--N------SGSVVV------REDKKLLTVLFPDGRDG 100 (468)
Q Consensus 35 k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~--~------~~~v~~------~~~k~~~f~i~~~~~~~ 100 (468)
.+|+||||||+.+.|.|.+++-+.++. ..+..+ . ...+.. ....++.|.+.. ..
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~---------~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~---~~ 283 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPL---------DIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC---GN 283 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCcee---------EEEEEecccccccCCCcceeecccccccCCCcceEEEec---Cc
Confidence 579999999999999999887765522 222222 1 011111 012245566553 56
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHhCC
Q 012222 101 RAFTLKAETSEDLYEWKTALELALAQAP 128 (468)
Q Consensus 101 r~y~l~A~s~~e~~~Wi~aI~~ai~~~p 128 (468)
|+..|.|.|...+..|+.+|+.+..+.|
T Consensus 284 r~l~l~~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 284 RSIRLRTKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999986654
No 117
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.33 E-value=0.0031 Score=51.34 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=58.6
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecC
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~ 97 (468)
..+++|.|. ..+. =+.|++.|=+..|.|-|...+.. . -...|.++...-+....+.+.+|.+....
T Consensus 3 eLlleg~l~--~~~~----~~eR~vFLFe~~ll~~K~~~~~y-------~-~K~~i~~~~l~i~e~~~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFR--EHGG----GKPRLLFLFQTMLLIAKPRGDKY-------Q-FKAYIPCKNLMLVEHLPGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEE--eecC----CCceEEEEecccEEEEEecCCee-------E-EEEEEEecceEEecCCCCCCcEEEEEecC
Confidence 357888664 2221 24588888888888888644322 1 11123333211111112236788887654
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 98 ~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
...+.|.|+|.|.++.+.|+++|+.+|
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 445789999999999999999999987
No 118
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.30 E-value=0.0015 Score=51.71 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=56.6
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecC-CcceeecCCCceeEEEEecC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~-~~~v~~~~~k~~~f~i~~~~ 97 (468)
+++.|.++ |+.+. .+|+|=++|++.--.+|-|+.... ..|.|.++. ...+..... +.+++.++
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~~~-~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVKNS-SHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEecC-ccEEEECC--
Confidence 46788554 44332 679999999987555555544322 345677766 444444444 33444454
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 98 ~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
+|+|+|. +....+.+|+++|.++.
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 55689999999998763
No 119
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=97.23 E-value=7.6e-05 Score=77.20 Aligned_cols=103 Identities=20% Similarity=0.392 Sum_probs=65.6
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEE-----EEecCCCCCCCCCCccccccccEEecCCcceeecCCCcee
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLV-----FFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~-----yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~ 90 (468)
+...-.+||||.-.+.. +|.||||||||-.-.-| -|+.++. . +..-+.|.++.++.....-.-.+.+++
T Consensus 461 p~nmkhsgylyaig~nv-wkrwkkrffvlvqvsqytfamcsyrekka-e----pqel~qldgytvdytdp~pglqgg~~f 534 (1218)
T KOG3543|consen 461 PPNMKHSGYLYAIGRNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKA-E----PQELIQLDGYTVDYTDPSPGLQGGKHF 534 (1218)
T ss_pred CCccccceeehhhhhHH-HHHhHhhEEEEEEhhhhhhHhhhhhhccc-C----hHHHhhccCeeeccCCCCCccccchHH
Confidence 44567789998554443 89999999999654333 3333221 1 222346777777653221111233333
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
|.-. ..|.+..|..+++.|+.-|++|+-+|..++
T Consensus 535 fnav---kegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 535 FNAV---KEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred HHHh---ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 3221 247789999999999999999999999876
No 120
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.12 E-value=0.0084 Score=51.19 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=56.8
Q ss_pred eeeeeeecCC---CcCCCeeEEEEEeC--CeEEEEecCCCCCCCCCCccccccccEEecCCcceeec-----CC--Ccee
Q 012222 23 GPLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----ED--KKLL 90 (468)
Q Consensus 23 G~L~~~k~g~---~~k~WkkRwfVL~~--~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~-----~~--k~~~ 90 (468)
.||||-.+++ ...+.++|||-|.. .+|++...++........ ..+.+.+..+..|... .. ..+.
T Consensus 13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~----~~~~i~I~~v~~V~~~~~~~~~~~~~~~~ 88 (123)
T PF12814_consen 13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSES----KAKSIRIESVTEVKDGNPSPPGLKKPDHN 88 (123)
T ss_pred cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccc----cccceEEeeeEEecCCCCCCccccccccc
Confidence 4777644433 23578999999986 467776654322211110 1122334333332211 11 0133
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
+.|... ..+|+.-|.|.+.++.+-|+.+|+..++
T Consensus 89 ~si~i~-t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 89 KSIIIV-TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred eEEEEE-cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 333332 3579999999999999999999998765
No 121
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=97.07 E-value=0.001 Score=67.33 Aligned_cols=104 Identities=20% Similarity=0.311 Sum_probs=67.3
Q ss_pred CCCCCCCCCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCc
Q 012222 9 ERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK 88 (468)
Q Consensus 9 ~~~~~~~~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~ 88 (468)
..+......-+...|+ +.+...-...|+.||++|+.+.|.||+++.... -| +-|.|.+.....- ..+..-
T Consensus 14 ~~~e~y~dgw~e~~G~--lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hG-----cRgsi~l~ka~i~-ahEfDe 83 (611)
T KOG1739|consen 14 EDPETYSDGWVERCGV--LSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HG-----CRGSICLSKAVIT-AHEFDE 83 (611)
T ss_pred CCcceecCCchhhcce--eeeeecccccccceEEEEcccchhhhhhhhhhh--cc-----cceeeEeccCCcc-cccchh
Confidence 3444444555666673 345555567899999999999999999976543 22 3345555543211 111122
Q ss_pred eeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 89 ~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
..|.|.. +....++.|.+...++.|+++|.---.
T Consensus 84 ~rfdIsv---n~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 84 CRFDISV---NDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred heeeeEe---ccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 2344443 356789999999999999999987554
No 122
>PF15408 PH_7: Pleckstrin homology domain
Probab=97.04 E-value=0.00023 Score=54.94 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=58.2
Q ss_pred EeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCc---ce-e---ecCC-CceeEEE
Q 012222 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG---SV-V---VRED-KKLLTVL 93 (468)
Q Consensus 22 ~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~---~v-~---~~~~-k~~~f~i 93 (468)
+||||...++. -+|||.+|++..|.+|.++.... +..+.++... .. . .... .-..|-|
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~----------L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY----------LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCce----------eeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 69999887774 57999999999999999864322 2233333210 00 0 0011 1124445
Q ss_pred EecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 94 ~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
-..+++++...+-|++.+-++.|++++.+
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 55677888888999999999999999875
No 123
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.83 E-value=0.00056 Score=77.39 Aligned_cols=161 Identities=15% Similarity=0.225 Sum_probs=125.6
Q ss_pred ccccchHHhh---hcCCCCCHHHHH-HHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcCCCC---C----CCCCChhH
Q 012222 165 VVGRPILLAL---EDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---F----SADEDAHV 233 (468)
Q Consensus 165 vFG~~L~~~~---~~~~~vP~il~~-~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g~~~---~----~~~~d~~~ 233 (468)
++|+++..+. .-....|.++.+ +.......|....|+||.++....+...+..++..... . ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 8888887772 223457888888 77777778999999999999988999998888875411 1 11234566
Q ss_pred HHHHHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHh----cCCh
Q 012222 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (468)
Q Consensus 234 va~llK~fLr~L--P~pLl~~~~~~~~~----------------~~~~~~~~~~~i-------~~l~~li~~----~LP~ 284 (468)
..+.++.++|.+ |.+....+.|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 777999999999 99988888888888 344444555666 66666 346 8999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccC-CCCc-cccchhccc----cccCCC
Q 012222 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (468)
Q Consensus 285 ~n~~~L~~L~~~L~~V~~~s~~N-kM~~-~nLA~vfaP----~Ll~~~ 326 (468)
....+|.++..|+.+|......| .|+. +||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999999888 8888 999999999 555544
No 124
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.57 E-value=0.0054 Score=50.06 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=49.7
Q ss_pred eEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCHHHHHHHHH
Q 012222 39 KRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKT 118 (468)
Q Consensus 39 kRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~ 118 (468)
--|-.-+|..|.||-...+.. .+-|.|.|..++.+......+|.|.+ .|..+.|+|.+..|++.||.
T Consensus 41 ~AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~ 107 (112)
T PF15406_consen 41 AAWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVA 107 (112)
T ss_pred hhhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHH
Confidence 346666777777775333322 14568889887776665555554444 47889999999999999999
Q ss_pred HHH
Q 012222 119 ALE 121 (468)
Q Consensus 119 aI~ 121 (468)
+|+
T Consensus 108 ~lk 110 (112)
T PF15406_consen 108 QLK 110 (112)
T ss_pred Hhh
Confidence 986
No 125
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.55 E-value=0.011 Score=62.90 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=30.5
Q ss_pred CceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 87 k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
.++.|.+. ...|+.+.|+|.+.+|++.||.+|++++.
T Consensus 454 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVA--FKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEE--ecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 45555554 35689999999999999999999999885
No 126
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.54 E-value=0.001 Score=71.47 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=64.5
Q ss_pred EEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCC
Q 012222 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (468)
Q Consensus 20 ~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~ 99 (468)
...|||.. +-.....|+|-|.|.+.-+|+|||+..|..|.. .+++-++.+..... ...-.|.+.|.+.. .
T Consensus 925 qLsg~Llr--kfknssgwqkLwvvft~fcl~fyKS~qD~~~la----slPlLgysvs~P~~-~d~i~K~~vfkl~f---k 994 (1036)
T KOG3531|consen 925 QLSGYLLR--KFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLA----SLPLLGYSVSIPAE-PDPIQKDYVFKLKF---K 994 (1036)
T ss_pred hhhHHHHH--HhhccccceeeeeeecceeeEeecccccccccc----cccccccccCCCCC-CCCcchhheeeeeh---h
Confidence 34576652 222345899999999999999999999877432 34455555543211 11223445565544 3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 100 GRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 100 ~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
..+|+|.|++.-...+|++.|+.+-
T Consensus 995 ~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 995 SHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhhhhhhhhhHHHHhhcCC
Confidence 4679999999999999999988654
No 127
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.35 E-value=0.097 Score=43.94 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=53.4
Q ss_pred CeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCC--CcEEEEEeCCHHHHH
Q 012222 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLY 114 (468)
Q Consensus 37 WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~--~r~y~l~A~s~~e~~ 114 (468)
=+.|-+.|=...|.|-|-..+.... +....+-...|.++...-....++...+|.+....+. ..+|.+||.|.++.+
T Consensus 24 ~~eR~vFLFe~~lvfsk~~~~~~~~-~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~ 102 (114)
T cd01232 24 GRERRVFLFEQSIIFAKEVKKKKQF-GNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQ 102 (114)
T ss_pred CceeEEEEeeceEEEEEEeccCCCC-CceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHH
Confidence 3567777777888888764432211 1111112223333332211122344566777665553 478999999999999
Q ss_pred HHHHHHHHHHH
Q 012222 115 EWKTALELALA 125 (468)
Q Consensus 115 ~Wi~aI~~ai~ 125 (468)
.|+..|++++.
T Consensus 103 ~W~~~I~~il~ 113 (114)
T cd01232 103 EWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 128
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.26 E-value=0.075 Score=43.98 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=55.7
Q ss_pred eEEEeeeeeeecCCCcCCC-eeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCC--------Cce
Q 012222 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKL 89 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~W-kkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~--------k~~ 89 (468)
.+.+|-|.+.+ . .+.| +.|+|.|=++.|.|.|.+.-. +..+. -.+.|.+..+.-+-..++ -++
T Consensus 2 li~~Gel~~~s--~-~~g~~q~R~~FLFD~~LI~CKkd~~r----~~~~~-yKgri~l~~~~I~d~~Dg~~~~~~~~~kn 73 (109)
T cd01224 2 LFLQGEATRQK--Q-NKGWNSSRVLFLFDHQMVLCKKDLIR----RDHLY-YKGRIDLDRCEVVNIRDGKMFSSGHTIKN 73 (109)
T ss_pred ceEeeeEEEEe--c-ccCCcccEEEEEecceEEEEeccccc----CCcEE-EEEEEEcccEEEEECCCCccccCCceeEE
Confidence 36788554332 2 1233 579999999999999865321 22221 122333333221111111 135
Q ss_pred eEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 012222 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 90 ~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
.|.|.... .+..|.|+|.|.++...|++||..
T Consensus 74 afkl~~~~-~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 74 SLKIYSES-TDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcC-CCeEEEEEECCHHHHHHHHHHHHH
Confidence 66665533 346799999999999999999875
No 129
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.20 E-value=0.075 Score=45.19 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=56.3
Q ss_pred eEEEeeeeeeecCC------CcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCcccc----ccccEEecCCcceee-----
Q 012222 19 VFKSGPLFISSKGI------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV----- 83 (468)
Q Consensus 19 v~k~G~L~~~k~g~------~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~----~l~~i~l~~~~~v~~----- 83 (468)
.+|.|.|.....++ .+..-+.+|+.|=++.|.|-|.+. +..+.+ +...+.+..+.....
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeeccccccccccc
Confidence 36788775332211 122456789999999999988543 222221 233344443221100
Q ss_pred --cCCCceeEEEEecC-CCC--cEEEEEeCCHHHHHHHHHHHH
Q 012222 84 --REDKKLLTVLFPDG-RDG--RAFTLKAETSEDLYEWKTALE 121 (468)
Q Consensus 84 --~~~k~~~f~i~~~~-~~~--r~y~l~A~s~~e~~~Wi~aI~ 121 (468)
....++.|.++.-. ..| +.+.|+|+|+.|+.+||+||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 01234567665322 223 579999999999999999974
No 130
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.00 E-value=0.035 Score=44.38 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=56.3
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCC--CC-CCCCCccccccccEEecCCcceeecCCCceeEEEEe
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS--AL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~--~~-~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~ 95 (468)
.+++|.|.....|. =|.|-|.|=++.|.|-+-... .. .+-.....++|..+.+... .|.+.
T Consensus 3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH- 66 (96)
T ss_pred ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc-
Confidence 57889776544443 368888888888888765321 11 1112223445555544432 12222
Q ss_pred cCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 96 DGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 96 ~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
.+.+++|.|.|.|..|+.+|+.+|++..
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3458899999999999999999998753
No 131
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=95.81 E-value=0.0017 Score=67.24 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhccCCCCccccchhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCC
Q 012222 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (468)
Q Consensus 294 ~~~L~~V~~~s~~NkM~~~nLA~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~ 373 (468)
+.||..|+.++....|.|.|||+||||+|+|.+....-..+. ..+| ++..+.....-++++++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 368999999999999999999999999999977532211110 0011 2233344455578999999999998
Q ss_pred CCC
Q 012222 374 DES 376 (468)
Q Consensus 374 ~~~ 376 (468)
...
T Consensus 72 ~~a 74 (670)
T KOG1449|consen 72 PTA 74 (670)
T ss_pred CcC
Confidence 643
No 132
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=95.39 E-value=0.12 Score=41.72 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=51.4
Q ss_pred cCCCeeEEEEEeC----CeEEEEec--CCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEe
Q 012222 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKA 107 (468)
Q Consensus 34 ~k~WkkRwfVL~~----~~L~yyk~--~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A 107 (468)
...|+|.=.+|+. ..|.+|-- ++..+|+-+-. +.....+..++...-+ ++.+.|++.. .++..|.|.|
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~---C~~I~EvR~tt~LEmP-D~~nTFvLK~--~~~~eyI~Ea 91 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVA---CSSISEVRECTRLEMP-DNLYTFVLKV--DDNTDIIFEV 91 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccccc---hhhhhhhhhccccccc-CcccEEEEEe--cCCceEEEEc
Confidence 5679988888852 24555554 45444433211 1112333444444333 3555677765 4466899999
Q ss_pred CCHHHHHHHHHHHHH
Q 012222 108 ETSEDLYEWKTALEL 122 (468)
Q Consensus 108 ~s~~e~~~Wi~aI~~ 122 (468)
.+.++++.|+..|+.
T Consensus 92 ~d~~q~~SWla~Ir~ 106 (107)
T cd01231 92 GDEQQLNSWLAELRY 106 (107)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999874
No 133
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.36 E-value=0.02 Score=59.69 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee-ecCCCceeEEE
Q 012222 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVL 93 (468)
Q Consensus 15 ~~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~-~~~~k~~~f~i 93 (468)
++..++|+|.|+ |...+...-+.||++|=+..+.|.+-.. ..+ +..+. .-..+.+....... ......+.|.+
T Consensus 268 PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~--~~k~~-~r~~~s~~~~~v~~~~~~~~~~tF~~ 341 (623)
T KOG4424|consen 268 PSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLP--GSKYE-VRARCSISHMQVQEDDNEELPHTFIL 341 (623)
T ss_pred cHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcc--cceec-cceeeccCcchhcccccccCCceEEE
Confidence 345789999665 5555456789999999999888887654 222 11111 11112222221111 11233455655
Q ss_pred EecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 94 ~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
+- ..|...|+|.|+++..+|+++|+.+|..+
T Consensus 342 ~G---~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 342 TG---KKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred ec---ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 42 35789999999999999999999999764
No 134
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.35 E-value=0.1 Score=47.49 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=26.3
Q ss_pred EEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecC
Q 012222 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKND 55 (468)
Q Consensus 21 k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~ 55 (468)
++|+||.+.+. ...|+++|+||..+.|..|+.-
T Consensus 1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~ 33 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLF 33 (185)
T ss_pred CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEE
Confidence 47999854443 4689999999999999888774
No 135
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.29 E-value=0.0079 Score=64.95 Aligned_cols=94 Identities=26% Similarity=0.368 Sum_probs=68.4
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEec
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~ 96 (468)
..+++.|||-+.+-++ ....+|||.-+.+..+.||..+++..++ +.|.+...+.|..-.+.+ |.+..
T Consensus 85 sp~~~~gwldk~~pqg-~~~~qkr~vkf~~~s~~yf~~~k~py~k---------~~i~va~is~v~~~gd~k--fevit- 151 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQG-EYPFQKRWVKFDGSSLEYFLSPKDPYSK---------GPIPVAAISAVRNFGDNK--FEVIT- 151 (1186)
T ss_pred CchhhcchhhccCcCc-ccccCccceecCCCCccccCCCCCCCCC---------CceeeehhhhhhhccCce--EEEEe-
Confidence 4589999885443333 3567999999999999999998887633 355555554443323333 33332
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
+.|+|.|.++++.++..|+..+++++.
T Consensus 152 --n~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 --NQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred --cceEEEEecCCcccceeeechhhhcch
Confidence 479999999999999999999999874
No 136
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.13 E-value=0.3 Score=40.90 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred CeeEEEEEeCCeEEEEecCCCCCCCCCCccc----cccccEEecCC--cceeecCCCc--eeEEEEecCCCCcEEEEEeC
Q 012222 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNS--GSVVVREDKK--LLTVLFPDGRDGRAFTLKAE 108 (468)
Q Consensus 37 WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~----~~l~~i~l~~~--~~v~~~~~k~--~~f~i~~~~~~~r~y~l~A~ 108 (468)
=+.||..|=+..+.+.|...+.. +.++.. +.+..+.+... .... ..+++ +.|.+.... ....|.|+|.
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~-~~~~~~~~~f~L~~~~-~~~~~~f~~K 95 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTE-GRDTRWKYGFYLAHKQ-GKTGFTFYFK 95 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcc-cCCcceEEEEEEEecC-CCccEEEEeC
Confidence 36899889888888888654421 122221 22333333321 1111 01223 455554422 2256999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 012222 109 TSEDLYEWKTALELALAQ 126 (468)
Q Consensus 109 s~~e~~~Wi~aI~~ai~~ 126 (468)
|+++.+.|+++|..|+..
T Consensus 96 tee~K~kWm~al~~a~sn 113 (116)
T cd01223 96 TEHLRKKWLKALEMAMSN 113 (116)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
No 137
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=95.07 E-value=0.02 Score=62.78 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=58.2
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~ 98 (468)
.-.+|||+ |.....++|++|||+|.++.|.||++........ .+.+.+.... + ..... +-.+...+.
T Consensus 77 ~~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~-------~~~~~~~~a~-i--~~~~~-~~~~~~~~~ 143 (799)
T KOG1737|consen 77 ASLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTC-------GGGINLVTAW-I--QNGER-MDICSVDGS 143 (799)
T ss_pred ccccceee--ccccccCCcccceEEecCcceeeeccCCccccCC-------CCcccccccc-c--ccCCC-cccchhhcc
Confidence 34678775 6666689999999999999999999876544222 2233332110 0 01111 111111122
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 99 DGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 99 ~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.+.|+..+.+..+...|+.+++.+
T Consensus 144 -~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 -CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred -cchhhhhhhHHHhhcchhhhhhhc
Confidence 467899999999999999998876
No 138
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.90 E-value=0.35 Score=41.70 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred eeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCHHHHHHHH
Q 012222 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (468)
Q Consensus 38 kkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi 117 (468)
+.|...|=...+.|.|-..+.....+.....-...|.++...-.....+....|.+....+ ..+|.+||.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 4688888888888887653321111111111223334433221111223345677765444 468999999999999999
Q ss_pred HHHHHHHHh
Q 012222 118 TALELALAQ 126 (468)
Q Consensus 118 ~aI~~ai~~ 126 (468)
..|+..+.+
T Consensus 109 ~~I~~iL~~ 117 (133)
T cd01227 109 NEIRKVLTS 117 (133)
T ss_pred HHHHHHHHH
Confidence 999998864
No 139
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=94.74 E-value=0.13 Score=44.71 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.7
Q ss_pred ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.+.|.|...+..+..|+|.|+|..++++|++.|.++
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 356777777777788999999999999999999875
No 140
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.39 E-value=0.45 Score=38.79 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=46.3
Q ss_pred eeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCHHHHHHHH
Q 012222 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (468)
Q Consensus 38 kkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi 117 (468)
++..|.|=++.|.|-.-....+ -......+|..+.+.+.. ....-+.+|.+.. ..+.+.+||+|.++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~k--y~~~~~~~L~~i~V~ni~---D~~~~kNafki~t---~~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAGK--YVMESTYSLNSVAVVNVK---DRENAKKVLKLLI---FPESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccce--EEEEEEEehHHeEEEecC---CCcCcCceEEEEe---CCccEEEEeCCHHHHHHHH
Confidence 4555677777776664322111 011122344444443321 1122345665543 2567999999999999999
Q ss_pred HHHHHHHH
Q 012222 118 TALELALA 125 (468)
Q Consensus 118 ~aI~~ai~ 125 (468)
+.|++|.+
T Consensus 92 ~~le~a~~ 99 (100)
T cd01226 92 EELEQAKR 99 (100)
T ss_pred HHHHHHhc
Confidence 99999863
No 141
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=93.88 E-value=0.18 Score=49.51 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=68.6
Q ss_pred CCCceEEEeeeeeeecC-CCcCCCeeEEEEEeCCeEEEEecCCCCC-CCCCCcccccccc--EEecCCcceeecCCCcee
Q 012222 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGG--IDLNNSGSVVVREDKKLL 90 (468)
Q Consensus 15 ~~~~v~k~G~L~~~k~g-~~~k~WkkRwfVL~~~~L~yyk~~~~~~-~~~~~~~~~~l~~--i~l~~~~~v~~~~~k~~~ 90 (468)
.+..++..||.--...+ ..+..++.||..|+|..++.|..++-.. .+...+.+..+.. +.+... ....+.+++|
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~D~R~~C 354 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTVDSRQHC 354 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--ccccccccce
Confidence 45678999977533333 2366779999999999999999865321 1111111111111 111110 0122457789
Q ss_pred EEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 91 f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
|.++. ..+...||..+...|+-+|-++.+.|+-
T Consensus 355 F~~qs--~~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQS--SGGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEc--CCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 99876 4467789999999999999999988774
No 142
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=93.77 E-value=0.033 Score=57.97 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=30.3
Q ss_pred eeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Q 012222 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (468)
Q Consensus 89 ~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~ 126 (468)
+||.|.. ..+.++.|.|.+-+|++.||+||+..|-.
T Consensus 446 e~F~IVs--~tgqtWhFeAtt~EERdaWvQai~sqIla 481 (749)
T KOG0705|consen 446 ECFEIVS--NTGQTWHFEATTYEERDAWVQAIQSQILA 481 (749)
T ss_pred ceEEEec--cccchhhhhhcchhhHHHHHHHHHHHHHH
Confidence 4777764 34788999999999999999999998854
No 143
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.39 E-value=0.016 Score=60.15 Aligned_cols=177 Identities=20% Similarity=0.189 Sum_probs=114.5
Q ss_pred CCccccchHHhhhc-CCCCCH-HHHHHHHHHHH---cC--CCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHH
Q 012222 163 SLVVGRPILLALED-IDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (468)
Q Consensus 163 ~~vFG~~L~~~~~~-~~~vP~-il~~~i~~L~~---~g--l~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va 235 (468)
...||.-|.-+.-. ++.||. .+.+||.-+.. ++ +..+|.|++..+.... .+...+....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 45566555444332 456888 77788776665 22 4566777776543221 1223444457889999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCCCCccccc
Q 012222 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (468)
Q Consensus 236 ~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 315 (468)
.+++.|.|.+|.|+.. ..|+ +.+...+.+...+- .....++.|+.+-+.|..||...+.-. .+++
T Consensus 279 ~d~dp~s~Q~~pp~~~-~~~~------k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~ 343 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK-EAFE------KEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLA 343 (670)
T ss_pred cccChhhhhcCCCCcc-cccc------cccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccce
Confidence 9999999999999443 2221 23333445555554 336899999999999999998887632 8999
Q ss_pred hhccccccCCCCCCCCccccccccCCCcHHHHHHHHHHhHHHHHHHHHHHhcccccCCCCC
Q 012222 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (468)
Q Consensus 316 ~vfaP~Ll~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~~~ 376 (468)
|++.|+++|++.+ ++. ++.. + ....+....++.+.|++...+|..+.
T Consensus 344 I~~~~~~~r~ppt----L~~-~~~h------~---~~~~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 344 IVWSPNLFRPPPT----LNG-ADTH------L---LSGLNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eecCCCCCCCCCC----CCc-hhhh------h---cccCCcceeecccchhhhhhhhhccc
Confidence 9999999998853 111 1100 0 11122334567889999999998765
No 144
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=91.75 E-value=0.026 Score=59.42 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=41.0
Q ss_pred eEEEeeeeeeecCCC-cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcce
Q 012222 19 VFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV 81 (468)
Q Consensus 19 v~k~G~L~~~k~g~~-~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v 81 (468)
-..+||||+.|.-.. ...|+|.||||.+..|+.|.++...++. ..+.+-...|.....|
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e----~~i~l~~~~i~~a~e~ 621 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAE----SVIKLPLFTISVAEEV 621 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchh----heeeccchhhhhHHHh
Confidence 357789987766522 5679999999999999999998876643 2334444444444333
No 145
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.97 E-value=1.5 Score=36.30 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred CeeEEEEEeCCeEEEEecCCCCCCCC-CCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCHHHHHH
Q 012222 37 WKKRWFILTRTSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYE 115 (468)
Q Consensus 37 WkkRwfVL~~~~L~yyk~~~~~~~~~-~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~ 115 (468)
=..||++|=.+.|.+....+... + .-+-.+++.++.++.... .+..++.|.|.- +.--+..+.|.+.+|+.+
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s--Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~ 100 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS--GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQE 100 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc--ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHH
Confidence 35899999999998887644221 1 011224677777764321 234456777753 333457888999999999
Q ss_pred HHHHHHHHH
Q 012222 116 WKTALELAL 124 (468)
Q Consensus 116 Wi~aI~~ai 124 (468)
|+..|++.+
T Consensus 101 Wl~hL~~~~ 109 (111)
T cd01225 101 WVELLNANN 109 (111)
T ss_pred HHHHHHhhc
Confidence 999998754
No 146
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=90.78 E-value=0.22 Score=49.63 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=64.8
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceee-------cCCCcee
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLL 90 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~-------~~~k~~~ 90 (468)
.+-+-|||-.+-.++..+.|+.-+++|+...|.+|.+-+-.+ ..+.-+...+.|....-|+. .......
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k----eaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~ls 366 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK----EAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLS 366 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH----HHhcChhhhhhhhhhhheecCCCCCCCcCCceEE
Confidence 566779887666666688899999999999999998754322 12221222222221111111 1111123
Q ss_pred EEEEecCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 91 TVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 91 f~i~~~~~~~-r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
|.+..-+..| .+|.|.++|..|+-.|..+|-.--.++
T Consensus 367 Fa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A 404 (506)
T KOG3551|consen 367 FATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA 404 (506)
T ss_pred EEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 4443322333 689999999999999999886655443
No 147
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.23 E-value=3 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=26.8
Q ss_pred ceeEEEEecCCC--CcEEEEEeCCHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALEL 122 (468)
Q Consensus 88 ~~~f~i~~~~~~--~r~y~l~A~s~~e~~~Wi~aI~~ 122 (468)
..||.|.. +.+ -+++.|-|+|.++++.|++.|+.
T Consensus 79 ~~~fTIiy-~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 79 ERCFTIVY-GTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccEEEEEE-CCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 35777764 333 56899999999999999999874
No 148
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=90.16 E-value=0.15 Score=52.18 Aligned_cols=103 Identities=15% Similarity=-0.021 Sum_probs=59.5
Q ss_pred CceEEEeeeeeeecCCCcCCCeeEEEEEeCC------eEEEEecCCCCCCCCCCccccccccEEecCCcceeecC---CC
Q 012222 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DK 87 (468)
Q Consensus 17 ~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~------~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~---~k 87 (468)
+..+|.|+++.+..+.+.|.|+++|++|..+ .|..|..++... .... ....-+.+.++++.+|.... ..
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~-~~~~rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWP-YRCLRRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccc-hhcceeeEeeccceeeecccccccC
Confidence 4578999999888877789999999999765 233333322111 1111 11122567777777665321 11
Q ss_pred ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
...+.++.... .. +|-+...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a-~e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRA-EE--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecch-HH--HHHHHHHHHhhhhhhhhhhcc
Confidence 11222222111 12 666666778888999987644
No 149
>PF15411 PH_10: Pleckstrin homology domain
Probab=87.57 E-value=9 Score=32.23 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=56.6
Q ss_pred CCCeeEEEEEeCCeEEEEecCCCCCCC---------CCCcccc-ccccEEecCCcceeecC-CCceeEEEEec-CCCCcE
Q 012222 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNL-TLGGIDLNNSGSVVVRE-DKKLLTVLFPD-GRDGRA 102 (468)
Q Consensus 35 k~WkkRwfVL~~~~L~yyk~~~~~~~~---------~~~~~~~-~l~~i~l~~~~~v~~~~-~k~~~f~i~~~-~~~~r~ 102 (468)
..|+.+.+-|=...|.++|..+..... +.....+ -.|.|.+.....|.... ...+...|.-. .+.--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 569999999999999999887654432 1112222 34557777776665433 22234444432 233457
Q ss_pred EEEEeCCHHHHHHHHHHH
Q 012222 103 FTLKAETSEDLYEWKTAL 120 (468)
Q Consensus 103 y~l~A~s~~e~~~Wi~aI 120 (468)
|+|...+++.++.|-.+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999998875
No 150
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=86.80 E-value=0.26 Score=52.50 Aligned_cols=90 Identities=7% Similarity=-0.110 Sum_probs=56.9
Q ss_pred eEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCC
Q 012222 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (468)
Q Consensus 19 v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~ 98 (468)
..+.| +++++.+..|+|+++||++.++.+.||+++-+.. .+...+ -+++.+.-.. ....+.. .+.
T Consensus 259 ~s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~~~~~---~~~~s~~fql---i~~t~~~--~~~---- 323 (936)
T KOG0248|consen 259 TSRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SVTKLE---QQGAAYAFQL---ITSTDKM--NFM---- 323 (936)
T ss_pred hHHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-ccceee---ccchhHHhhh---hhhceeE--EEe----
Confidence 36667 4456677799999999999999999999987532 221111 1122111100 0111221 122
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHHH
Q 012222 99 DGRAFTLKAETSEDLYEWKTALELAL 124 (468)
Q Consensus 99 ~~r~y~l~A~s~~e~~~Wi~aI~~ai 124 (468)
..+|++-++...-+.+|+++.....
T Consensus 324 -~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 -TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred -ccChhhhhhhHHHHHHHHHHHhccc
Confidence 2468999999999999999987754
No 151
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.84 E-value=0.014 Score=57.82 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=59.7
Q ss_pred CCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee-ecCCCceeEEEEecCCCCcEEEEEeCCHHHH
Q 012222 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (468)
Q Consensus 35 k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~-~~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~ 113 (468)
..|++-|||++...+-||.+....... + --+.|++..|..|. ......+.|.|. ..+.+|.|.|.+.--.
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~---~---L~~~~~LR~C~~v~e~a~q~nY~~~i~---~~~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEAD---E---LDGEIDLRSCTDVTEYAVQRNYGFQIH---TKDAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc---c---CCccccHHHHHHHHHHHHHhccceeec---ccchhhhhHHHHHHHH
Confidence 459999999999999999987543311 1 23567888877653 222344555553 3467899999999999
Q ss_pred HHHHHHHHHHHH
Q 012222 114 YEWKTALELALA 125 (468)
Q Consensus 114 ~~Wi~aI~~ai~ 125 (468)
..|+.|+++...
T Consensus 104 ~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 104 RNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 152
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=84.63 E-value=0.9 Score=47.63 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCccee--------ecCCC
Q 012222 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--------VREDK 87 (468)
Q Consensus 16 ~~~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~--------~~~~k 87 (468)
++...|+||+---.... ..-||-|..|....+..|.++.... --..|.|+...+|. +....
T Consensus 410 sst~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~~vp~~~~ 478 (888)
T KOG4236|consen 410 SSTKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFSLVPAGTN 478 (888)
T ss_pred chhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcccCCCCCC
Confidence 45678899773211111 1124567778888888888765533 12234443333332 34556
Q ss_pred ceeEEEEecCCCCcEEEEEeCC------------HHHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELALA 125 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s------------~~e~~~Wi~aI~~ai~ 125 (468)
.+||.|.. +.+.||-.++ .+.++.|-.||+.|+-
T Consensus 479 phcFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 479 PHCFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred CceEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 78999976 4456666666 4458899999998773
No 153
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=81.12 E-value=0.039 Score=64.24 Aligned_cols=101 Identities=24% Similarity=0.319 Sum_probs=65.1
Q ss_pred eEEEeeeeeee------cCCCcCCCeeEEEEEeCCeEEEEecCCCCCCC----CCCccccccccEEecCCcceeec-CCC
Q 012222 19 VFKSGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----RGGEVNLTLGGIDLNNSGSVVVR-EDK 87 (468)
Q Consensus 19 v~k~G~L~~~k------~g~~~k~WkkRwfVL~~~~L~yyk~~~~~~~~----~~~~~~~~l~~i~l~~~~~v~~~-~~k 87 (468)
...+|+||.+. +...-++|..-||++..+.+.||||.+..... -+++..+.+....+. +... .+|
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~----~a~dy~kk 2374 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIE----VASDYHKK 2374 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHH----HHHHHHHH
Confidence 46789987442 22336789999999999999999997654321 011221111111111 1111 234
Q ss_pred ceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 88 ~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
++.|.+. .++|..|.|+|..+++|..|+.++..++.
T Consensus 2375 k~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2375 KHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred hHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4455554 57789999999999999999999888775
No 154
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.22 E-value=0.31 Score=50.87 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=51.4
Q ss_pred cCCCeeEEEEEe----CCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCC
Q 012222 34 WKSWKKRWFILT----RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET 109 (468)
Q Consensus 34 ~k~WkkRwfVL~----~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s 109 (468)
.|..+|.||... ...+.||++. . .+-..+.+.++..++...+.. .+-..|.+.+..+.-..+++.|++
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~----ap~~~i~l~gcev~~dV~~~~--~k~~i~l~~~~~~~msEi~LRCd~ 443 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--G----APAISINLKGCEVTPDVNLSQ--QKYAIKLLVPTAEGMSEIWLRCDN 443 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--C----CCCCchhhcCcccCCcccccc--ccceEEEEeecCCccceeEEecCC
Confidence 455555555554 4455555554 1 122334566666665433322 223344455544556789999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012222 110 SEDLYEWKTALELALA 125 (468)
Q Consensus 110 ~~e~~~Wi~aI~~ai~ 125 (468)
+...-+||.|-+-|.+
T Consensus 444 E~QYA~WMAaCrLASK 459 (664)
T KOG3727|consen 444 EQQYARWMAACRLASK 459 (664)
T ss_pred HHHHHHHHHHhhHhhc
Confidence 9999999999987764
No 155
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=76.11 E-value=26 Score=30.45 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=51.8
Q ss_pred eEEEEEeCCeEEEEecCCCCCCCCCC--------cc-------ccccccEEecCCcceeecCCCceeEEEEe-----cCC
Q 012222 39 KRWFILTRTSLVFFKNDPSALPQRGG--------EV-------NLTLGGIDLNNSGSVVVREDKKLLTVLFP-----DGR 98 (468)
Q Consensus 39 kRwfVL~~~~L~yyk~~~~~~~~~~~--------~~-------~~~l~~i~l~~~~~v~~~~~k~~~f~i~~-----~~~ 98 (468)
---||.+.-...+||+....+.+-++ +. -++.....+..... .+.+..+.+.+.. .++
T Consensus 51 ~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~egR 128 (160)
T cd01255 51 LMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSELEGR 128 (160)
T ss_pred EEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccccCC
Confidence 45788999999999886543322111 00 01112222222111 1233444454433 233
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 99 DGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 99 ~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
..++|.||+.+.+..+..++.|++.++.+
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsilre~ 157 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSILRES 157 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999998753
No 156
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=74.48 E-value=5.2 Score=45.88 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=39.0
Q ss_pred cCCCceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCCcc
Q 012222 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (468)
Q Consensus 84 ~~~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p~~ 130 (468)
..+++-+|+|........-|-+.|.|..|++.|++.|+.++...|..
T Consensus 681 Atd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 681 ATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred hccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 45677789998765556789999999999999999999999876543
No 157
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=73.82 E-value=5.1 Score=44.04 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=35.6
Q ss_pred CCceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhCC
Q 012222 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (468)
Q Consensus 86 ~k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~p 128 (468)
.+.+.|.+.+.......|.|.|++++|+.+|+++|+.+...+.
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~ 914 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKAD 914 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhh
Confidence 3446777777777777899999999999999999999887653
No 158
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=71.26 E-value=5.5 Score=42.17 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=56.8
Q ss_pred cCCCeeEEEEE---eCCeEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEecCCCCcEEEEEeCCH
Q 012222 34 WKSWKKRWFIL---TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (468)
Q Consensus 34 ~k~WkkRwfVL---~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~~~~~r~y~l~A~s~ 110 (468)
.+.|+..|++. ....++-|-.+.+.. ....+++.++.+.....+. ..+..+.|.++. ....++|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~----a~~~iPl~~~~v~~pe~~~-~~D~~~~~k~~~---s~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVR----AQATIPLPGVEVTIPEFVR-REDLFHVFKLVQ---SHLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccc----cccccccCccccCCCcccc-cchhcchhhhhh---hcceeeeccCCH
Confidence 46899999998 344788888887744 2233566666666433222 233334444443 346799999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012222 111 EDLYEWKTALELALA 125 (468)
Q Consensus 111 ~e~~~Wi~aI~~ai~ 125 (468)
+-.+.|++.+..|..
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988774
No 159
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=65.63 E-value=68 Score=25.62 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=46.6
Q ss_pred CeeEEEEEe--CC---eEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCC--ceeEEEEecCCCCcEEEEEeCC
Q 012222 37 WKKRWFILT--RT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK--KLLTVLFPDGRDGRAFTLKAET 109 (468)
Q Consensus 37 WkkRwfVL~--~~---~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k--~~~f~i~~~~~~~r~y~l~A~s 109 (468)
-+.||.+|. .. .+..++.+.... | .+. .-..-.|.....|...... ...|.++. +++|+..|.|
T Consensus 3 kK~r~Lclsv~~~~~~~v~l~k~K~~~~---g-~f~-i~ktW~L~eL~~I~~~~~~~~~~~F~l~~----~k~y~W~a~s 73 (91)
T PF15277_consen 3 KKPRYLCLSVTNSPRIQVRLHKVKQNDN---G-SFQ-IGKTWDLDELKAIDGINPDKDTPEFDLTF----DKPYYWEASS 73 (91)
T ss_dssp EEEEEEEEEEETTETTEEEEEEEEE-CC---S--EE-EEEEEEGGG--EEEE-SSS--TTEEEEES----SSEEEEEESS
T ss_pred cccEEEEEEEecCCceEEEEEEEEecCC---C-cEE-EeeEEehhhceeeeeecCCCCCcCEEEEE----CCCcEEEeCC
Confidence 477887772 22 366666654432 1 121 1122333333333322222 24688887 6799999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012222 110 SEDLYEWKTALELALA 125 (468)
Q Consensus 110 ~~e~~~Wi~aI~~ai~ 125 (468)
..|....+..|-+...
T Consensus 74 ~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 74 AKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 160
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=64.88 E-value=3 Score=29.14 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=19.0
Q ss_pred cCCCeeEEEEEeCCeEEEEec
Q 012222 34 WKSWKKRWFILTRTSLVFFKN 54 (468)
Q Consensus 34 ~k~WkkRwfVL~~~~L~yyk~ 54 (468)
.+.|.++|..+.+++|..||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 578999999999999999983
No 161
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=58.78 E-value=3.6 Score=35.61 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.8
Q ss_pred cCCCeeEEEEEeCCeEEEEecC
Q 012222 34 WKSWKKRWFILTRTSLVFFKND 55 (468)
Q Consensus 34 ~k~WkkRwfVL~~~~L~yyk~~ 55 (468)
++.|-|+|+.+.++.|.+||=-
T Consensus 28 VRrWEKKwVtvgDTslRIyKWV 49 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWV 49 (165)
T ss_pred HHHHhhheEeecccceEEEEee
Confidence 6789999999999999999853
No 162
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=53.50 E-value=32 Score=36.92 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=46.7
Q ss_pred cCCCeeEEEEEeCCeEEEEecCCCCCCCCCCccccccccEEecCCcc-ee------ecCCCceeEEEEecCC-CC--cEE
Q 012222 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VV------VREDKKLLTVLFPDGR-DG--RAF 103 (468)
Q Consensus 34 ~k~WkkRwfVL~~~~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~-v~------~~~~k~~~f~i~~~~~-~~--r~y 103 (468)
+...+..|+.|=++.|..-|.+....= .-.-..+-..+.+..+.. .. .....++.|.++.-.. .+ ..|
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~f--~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~ 573 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGSF--QVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTEL 573 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCce--EEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceee
Confidence 345567888888888887776433110 000001111222222221 00 0122345666654222 22 479
Q ss_pred EEEeCCHHHHHHHHHHHH
Q 012222 104 TLKAETSEDLYEWKTALE 121 (468)
Q Consensus 104 ~l~A~s~~e~~~Wi~aI~ 121 (468)
.|+|+|+.|+.+||.|+.
T Consensus 574 lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 574 LLSAESQSDRQRWISALR 591 (695)
T ss_pred eecCCchHHHHHHHHhcC
Confidence 999999999999999976
No 163
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=49.51 E-value=1.5e+02 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=29.8
Q ss_pred CceeEEEEecCCCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Q 012222 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (468)
Q Consensus 87 k~~~f~i~~~~~~~r~y~l~A~s~~e~~~Wi~aI~~ai~~~ 127 (468)
..+.|.+.+ . .+..-|.++|..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T--~-~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKT--A-QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEe--c-CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 344566554 3 5679999999999999999999988754
No 164
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=43.45 E-value=21 Score=38.36 Aligned_cols=154 Identities=13% Similarity=-0.003 Sum_probs=93.2
Q ss_pred CCCCCCCccccchHHhhhcCCC-----CCHHHHHHHHHHHHcCCCccCcEeecCCHHHHHHHHHHHhcC--CCCCCCCCC
Q 012222 158 KRPVKSLVVGRPILLALEDIDG-----GPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG--KTEFSADED 230 (468)
Q Consensus 158 ~~~~~~~vFG~~L~~~~~~~~~-----vP~il~~~i~~L~~~gl~~eGIFR~~g~~~~v~~l~~~~~~g--~~~~~~~~d 230 (468)
..+.+..+++ -|......... .+.-..++..+....+....|.|+.+| ..+..+++.-+.+ .+....+..
T Consensus 32 ~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~ 108 (577)
T KOG4270|consen 32 VFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQR 108 (577)
T ss_pred cCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchh
Confidence 3455566666 45444432111 244457888888888899999999999 3344444443333 345667778
Q ss_pred hhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcc
Q 012222 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHE 306 (468)
Q Consensus 231 ~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~----~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~ 306 (468)
.+++.++.+.+++.+ ++.+...++..+........+. ...+++. ...|..|+ +-+++.||... ..
T Consensus 109 ~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~l 177 (577)
T KOG4270|consen 109 HADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----RL 177 (577)
T ss_pred hhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----hh
Confidence 899999999999998 7776666655444322221111 1233442 45677777 66666666554 34
Q ss_pred CCCCccccchhccccccCC
Q 012222 307 NRMTPSAVAACMAPLLLRP 325 (468)
Q Consensus 307 NkM~~~nLA~vfaP~Ll~~ 325 (468)
+.|.=.+...+|.++-..+
T Consensus 178 ~~e~Gl~eEGlFRi~~~~s 196 (577)
T KOG4270|consen 178 LLEGGLKEEGLFRINGEAS 196 (577)
T ss_pred hhhcCccccceeccCCCch
Confidence 4555566666666665543
No 165
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=40.18 E-value=88 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh
Q 012222 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYK 263 (468)
Q Consensus 229 ~d~~~va~llK~fLr~LP~pLl~~~~~~~~~~~~~ 263 (468)
.|+|..+++.|.|+|.+|+|++|.++-..+..|.+
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~ 152 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIR 152 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHhh
Confidence 38999999999999999999999887777776663
No 166
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=38.55 E-value=1.4e+02 Score=22.83 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHH
Q 012222 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLL 290 (468)
Q Consensus 237 llK~fLr~LP~pLl~~~~~~~~~~~~~~~~~~~~i~~l~~li~~~LP~~n~~~L 290 (468)
+||.+|+.|-..--+.+.-..|......-+..+-...-+.||.+-+|...-.-|
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~L 54 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKL 54 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 478899999888877788888888888888888888888888888888774433
No 167
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=35.04 E-value=45 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=32.7
Q ss_pred ccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHhhCCC
Q 012222 198 VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPS 247 (468)
Q Consensus 198 ~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~llK~fLr~LP~ 247 (468)
.+|-|+++|+.. ++.+.+.++-. +. ..+.+++|+++-..|..+|.
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~~---l~-~~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGLD---LP-EEDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS----TT-TTTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecCC-HHHHHHHHCcC---CC-ccchhhHHHHHHHHcCCCCC
Confidence 468899999765 66777777753 33 35788999999999999986
No 168
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=32.07 E-value=45 Score=30.28 Aligned_cols=27 Identities=37% Similarity=0.353 Sum_probs=19.3
Q ss_pred CCccccchhc-cccccCCCCCCCCcccc
Q 012222 309 MTPSAVAACM-APLLLRPLLAGECELED 335 (468)
Q Consensus 309 M~~~nLA~vf-aP~Ll~~~~~~~~~~e~ 335 (468)
|.+.|+|.|+ +|+|+.|..+.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (195)
T PRK15361 1 MEASNVALVLPAPSLLTPSSTPSPSGEG 28 (195)
T ss_pred CCccceeeeecCccccCCCCCCCCCccc
Confidence 6788888765 89999987655544443
No 169
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.39 E-value=5.1e+02 Score=29.28 Aligned_cols=135 Identities=10% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCccccchHHhhhcCCCCCHHHHHHHHHHHHc--C---CCccCcEeecCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH
Q 012222 163 SLVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDC 237 (468)
Q Consensus 163 ~~vFG~~L~~~~~~~~~vP~il~~~i~~L~~~--g---l~~eGIFR~~g~~~~v~~l~~~~~~g~~~~~~~~d~~~va~l 237 (468)
...|-.+|-.++.....+=.++.++|..+... + ...+..|-.+-+..+++.++-.+-.. +....+++.|--=
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE 396 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILRE 396 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHH
Confidence 34455556556665666888888888887743 2 34556777888999998888776553 2222344444444
Q ss_pred HHHHHhhCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 012222 238 VKHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMM 297 (468)
Q Consensus 238 lK~fLr~LP~p-----------------Ll~~~~~~~~~~~~~~~~~---~~~i~~l~~li~~~LP~~n~~~L~~L~~~L 297 (468)
|+.|.+.-+.. =++..+.+-++......+. .+.+..||.+| +.=|..|..+|.+|..+|
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLL 475 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHh
Confidence 44444444421 1333455555555544432 35577888855 788999999999999988
Q ss_pred HHHH
Q 012222 298 HTIS 301 (468)
Q Consensus 298 ~~V~ 301 (468)
..+.
T Consensus 476 dti~ 479 (968)
T KOG1060|consen 476 DTIL 479 (968)
T ss_pred hhhh
Confidence 5443
No 170
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=27.93 E-value=46 Score=34.79 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=29.8
Q ss_pred CceeEEEEecCCCCc-EEEEEeCCHHHHHHHHHHHHHHHH
Q 012222 87 KKLLTVLFPDGRDGR-AFTLKAETSEDLYEWKTALELALA 125 (468)
Q Consensus 87 k~~~f~i~~~~~~~r-~y~l~A~s~~e~~~Wi~aI~~ai~ 125 (468)
....|.+..+....+ +|.+||.+.++.++|+.+|...+-
T Consensus 322 s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~ 361 (448)
T KOG0689|consen 322 SASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLW 361 (448)
T ss_pred CCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHH
Confidence 334566665544444 799999999999999999988764
No 171
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=25.67 E-value=80 Score=34.80 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHhhCCCCCCChhhHH------HHHHHHh---cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccCC
Q 012222 238 VKHVLRELPSSPVPASCCT------ALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (468)
Q Consensus 238 lK~fLr~LP~pLl~~~~~~------~~~~~~~---~~~~~~~i~~l~~li~~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 308 (468)
++.||+.+|--|+..+..- ...+... ......-+..|+... ..|++..+.+..|++.+...|..
T Consensus 302 ~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~~~~~~~~~l~~~I~~~~-~~Lt~~E~~IA~yIl~n~~~v~~------ 374 (638)
T PRK14101 302 FEAYLANIPTYLITAEYPAFLGVSAILAEQLSNRTGGASSAVFERIRQMR-DALTPAERRVADLALNHPRSIIN------ 374 (638)
T ss_pred hHHHHhcCCEEEEeCCChhHHHHHHHHHHHhccccCCchHHHHHHHHHHH-hhcCHHHHHHHHHHHhCHHHHHh------
Confidence 3456666666555544211 1112221 122345567777744 68999999999999999988875
Q ss_pred CCccccc
Q 012222 309 MTPSAVA 315 (468)
Q Consensus 309 M~~~nLA 315 (468)
||+..||
T Consensus 375 ~si~eLA 381 (638)
T PRK14101 375 DPIVDIA 381 (638)
T ss_pred ccHHHHH
Confidence 5555555
No 172
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=24.79 E-value=65 Score=34.40 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=47.2
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCC-eEEEEecCCCCCCCCCCccccccccEEecCCcceeecCCCceeEEEEec
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~-~L~yyk~~~~~~~~~~~~~~~~l~~i~l~~~~~v~~~~~k~~~f~i~~~ 96 (468)
.+.|.|.| .++.+.. =+||.|+|+.+ .|.|+. +.... ..+.|.+..+..+..+. .+.+|+.++
T Consensus 450 ~i~k~~~l--~k~~~lf--~rkr~lllTn~~rll~~~-~~~~~---------lk~eip~~~~~~~e~~n-~~~~~i~TP- 513 (604)
T KOG0592|consen 450 LILKEGAL--EKRQGLF--ARKRMLLLTNGPRLLYVD-PQNLV---------LKGEIPWSPDLRVELKN-SSTFFIHTP- 513 (604)
T ss_pred hHHhHHHH--Hhhhhhh--hceeEEEecCCCeEEEEe-cccce---------eccccccCcccceeecc-CcceEEECC-
Confidence 45566644 3333222 25699999865 555555 32221 12234444333333322 233455454
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHH
Q 012222 97 GRDGRAFTLKAETSEDLYEWKTALELA 123 (468)
Q Consensus 97 ~~~~r~y~l~A~s~~e~~~Wi~aI~~a 123 (468)
.++|+|.-. +.....|..||..+
T Consensus 514 ---~k~~~l~d~-~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 514 ---NKVYYLEDP-EQRASVWCKAIETV 536 (604)
T ss_pred ---ccceeccCc-ccchhHHHHhhhhh
Confidence 478888763 57889999999998
No 173
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.22 E-value=75 Score=35.52 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=28.3
Q ss_pred ceEEEeeeeeeecCCCcCCCeeEEEEEeCCeEEEEec
Q 012222 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN 54 (468)
Q Consensus 18 ~v~k~G~L~~~k~g~~~k~WkkRwfVL~~~~L~yyk~ 54 (468)
.++|+|.||.. ...-+.|.+.||||....|+|-..
T Consensus 474 nsvk~GiLy~k--d~vdheWt~h~fvlt~~kl~ys~e 508 (1267)
T KOG1264|consen 474 NSVKQGILYMK--DPVDHEWTRHYFVLTDAKLSYSDE 508 (1267)
T ss_pred hhhhcceEEEe--cCCCCceeeeEEEEecceeEeehh
Confidence 45899999844 334579999999999999998854
No 174
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=22.60 E-value=2.4e+02 Score=29.03 Aligned_cols=64 Identities=20% Similarity=0.430 Sum_probs=44.1
Q ss_pred cccccccccccCCCCC--CCCccccchHHh-hhcCCCCCHHHHHHHHHHHHcCC-Ccc--CcEeecCCHH
Q 012222 146 DTIEGSFHQWRDKRPV--KSLVVGRPILLA-LEDIDGGPSFLEKALRFLEKFGT-KVE--GILRQAADVE 209 (468)
Q Consensus 146 ~~~~~~~~~~~~~~~~--~~~vFG~~L~~~-~~~~~~vP~il~~~i~~L~~~gl-~~e--GIFR~~g~~~ 209 (468)
+++++...+.+.|+|. ...+||.|-..- ++.--.||.||.+=.+|...-|. +.. -+|-++|++.
T Consensus 186 ~SLEGkrg~PR~KPPfPa~~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s~GTKlf~~sG~V~ 255 (424)
T COG1894 186 ESLEGKRGQPRLKPPFPATSGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNSRGTKLFSLSGHVK 255 (424)
T ss_pred HHhcCCCCCCCCCCCCccccCccCCCceeecchhhhhhHHHHHhhHHHHHhcCCCCCCCceEEEeecccc
Confidence 4577777777777766 478999987321 12234599999999999988662 223 3788888754
Done!