Query 012223
Match_columns 468
No_of_seqs 126 out of 171
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 2E-136 5E-141 1010.0 33.8 460 4-467 3-462 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 1.6E-53 3.4E-58 405.0 18.7 179 282-460 1-196 (196)
3 PF12537 DUF3735: Protein of u 99.9 8E-25 1.7E-29 176.2 4.1 71 141-211 1-72 (72)
4 PF04791 LMBR1: LMBR1-like mem 97.7 0.0073 1.6E-07 64.8 23.0 158 17-180 6-192 (471)
5 PRK11546 zraP zinc resistance 87.7 8.9 0.00019 35.1 11.2 34 248-284 86-119 (143)
6 KOG3231 Predicted assembly/vac 77.9 16 0.00034 34.3 8.7 36 179-214 3-38 (208)
7 PF11712 Vma12: Endoplasmic re 74.0 11 0.00023 34.2 6.6 48 13-64 85-132 (142)
8 PF09726 Macoilin: Transmembra 62.9 61 0.0013 37.2 11.1 54 2-61 36-89 (697)
9 PRK11637 AmiB activator; Provi 57.7 91 0.002 33.3 10.8 31 186-216 46-76 (428)
10 PRK09039 hypothetical protein; 55.2 1.1E+02 0.0023 32.0 10.5 24 391-416 285-308 (343)
11 KOG0709 CREB/ATF family transc 55.1 37 0.00079 36.8 7.1 49 254-302 289-337 (472)
12 PF13801 Metal_resist: Heavy-m 54.2 1.3E+02 0.0027 25.0 9.6 35 183-217 41-75 (125)
13 PF08317 Spc7: Spc7 kinetochor 52.8 1.1E+02 0.0025 31.4 10.3 35 184-218 206-240 (325)
14 KOG3599 Ca2+-modulated nonsele 50.6 4.8E+02 0.01 30.6 21.4 103 5-107 500-618 (798)
15 KOG0971 Microtubule-associated 48.3 1.2E+02 0.0025 35.8 9.9 36 252-287 1093-1128(1243)
16 PF11932 DUF3450: Protein of u 47.1 2.4E+02 0.0052 27.7 11.2 33 251-283 84-116 (251)
17 PF05508 Ran-binding: RanGTP-b 45.9 69 0.0015 32.9 7.1 52 146-198 1-56 (302)
18 PF05082 Rop-like: Rop-like; 45.4 46 0.00099 26.6 4.6 29 251-279 2-30 (66)
19 PRK10803 tol-pal system protei 45.3 1.8E+02 0.0039 29.1 10.0 65 186-279 39-103 (263)
20 PRK11637 AmiB activator; Provi 42.8 2.3E+02 0.005 30.2 11.0 28 251-278 96-123 (428)
21 PRK12907 secY preprotein trans 42.2 64 0.0014 34.8 6.7 90 81-171 272-386 (434)
22 PRK09343 prefoldin subunit bet 41.4 1.9E+02 0.0042 25.4 8.5 37 251-287 78-114 (121)
23 TIGR02338 gimC_beta prefoldin, 40.7 2.4E+02 0.0051 24.2 10.6 33 251-283 74-106 (110)
24 KOG0250 DNA repair protein RAD 40.5 2.5E+02 0.0053 33.8 11.3 46 250-295 400-446 (1074)
25 PRK10884 SH3 domain-containing 39.8 3.6E+02 0.0078 26.1 12.8 28 253-280 134-161 (206)
26 PF04111 APG6: Autophagy prote 39.4 3.2E+02 0.0069 28.1 11.0 28 251-278 78-105 (314)
27 PF04799 Fzo_mitofusin: fzo-li 38.8 2.1E+02 0.0045 27.1 8.6 34 250-283 126-162 (171)
28 COG4942 Membrane-bound metallo 36.6 3.1E+02 0.0068 29.6 10.6 21 194-214 38-58 (420)
29 KOG2019 Metalloendoprotease HM 36.6 1.7E+02 0.0037 33.7 8.8 57 163-219 353-421 (998)
30 cd00632 Prefoldin_beta Prefold 36.1 2.7E+02 0.0058 23.6 9.7 32 252-283 71-102 (105)
31 PF03350 UPF0114: Uncharacteri 36.0 2.6E+02 0.0057 24.7 8.6 63 348-410 4-71 (124)
32 PF11570 E2R135: Coiled-coil r 35.5 3.4E+02 0.0074 24.6 10.3 34 186-219 21-54 (136)
33 PRK15422 septal ring assembly 33.0 2.8E+02 0.0061 22.9 8.6 26 189-214 6-31 (79)
34 PF07106 TBPIP: Tat binding pr 32.4 4E+02 0.0087 24.5 9.8 31 184-214 69-99 (169)
35 PRK12417 secY preprotein trans 32.3 1.3E+02 0.0028 32.2 7.0 90 81-170 240-357 (404)
36 PF01486 K-box: K-box region; 32.1 2.3E+02 0.005 23.8 7.3 26 184-209 46-71 (100)
37 COG3074 Uncharacterized protei 31.8 1.3E+02 0.0029 24.3 5.2 30 251-280 18-47 (79)
38 PF06570 DUF1129: Protein of u 31.5 4.6E+02 0.01 24.9 13.7 89 5-100 80-169 (206)
39 PF14077 WD40_alt: Alternative 31.4 61 0.0013 24.0 3.0 22 251-272 18-39 (48)
40 smart00787 Spc7 Spc7 kinetocho 29.5 4.4E+02 0.0095 27.2 10.1 34 185-218 202-235 (312)
41 PF05600 DUF773: Protein of un 29.4 2.1E+02 0.0044 31.7 8.1 43 256-299 465-507 (507)
42 PF04123 DUF373: Domain of unk 29.0 4.9E+02 0.011 27.4 10.4 45 262-313 137-181 (344)
43 TIGR00985 3a0801s04tom mitocho 28.9 23 0.00049 32.7 0.6 31 288-328 6-36 (148)
44 KOG3850 Predicted membrane pro 28.7 7.6E+02 0.016 26.5 12.0 28 288-315 383-410 (455)
45 PF14389 Lzipper-MIP1: Leucine 28.6 3.2E+02 0.007 22.7 7.4 24 251-274 61-84 (88)
46 PF04238 DUF420: Protein of un 28.1 4.5E+02 0.0097 23.7 13.8 79 15-98 13-94 (133)
47 PF10805 DUF2730: Protein of u 28.0 3.9E+02 0.0084 22.9 8.7 30 182-218 30-59 (106)
48 COG3883 Uncharacterized protei 27.9 6.5E+02 0.014 25.5 10.7 15 251-265 80-94 (265)
49 TIGR00967 3a0501s007 preprotei 27.9 1.5E+02 0.0033 31.6 6.7 92 81-172 253-371 (410)
50 PF06005 DUF904: Protein of un 27.5 2.2E+02 0.0047 23.0 5.9 28 251-278 18-45 (72)
51 KOG1937 Uncharacterized conser 27.3 3.4E+02 0.0074 29.6 8.9 36 251-286 352-387 (521)
52 PRK10869 recombination and rep 27.1 3.2E+02 0.0069 30.4 9.2 30 250-279 340-369 (553)
53 KOG0483 Transcription factor H 26.5 1.8E+02 0.004 28.1 6.3 90 181-286 54-147 (198)
54 COG4942 Membrane-bound metallo 26.0 5.5E+02 0.012 27.8 10.2 28 188-215 74-101 (420)
55 PF07438 DUF1514: Protein of u 25.5 2E+02 0.0044 22.9 5.2 23 254-276 21-43 (66)
56 PF09753 Use1: Membrane fusion 25.2 4.6E+02 0.01 25.8 9.2 32 254-285 188-219 (251)
57 PF00846 Hanta_nucleocap: Hant 25.1 5.4E+02 0.012 27.6 9.7 38 255-292 46-83 (428)
58 PF01920 Prefoldin_2: Prefoldi 24.8 4E+02 0.0086 21.9 10.3 30 251-280 69-98 (106)
59 PF11932 DUF3450: Protein of u 24.6 6.7E+02 0.015 24.6 11.2 31 255-285 67-97 (251)
60 KOG0994 Extracellular matrix g 24.5 3.7E+02 0.0081 32.8 9.1 28 251-278 1267-1294(1758)
61 PRK10803 tol-pal system protei 24.3 2.2E+02 0.0049 28.4 6.8 33 251-283 61-93 (263)
62 COG1579 Zn-ribbon protein, pos 24.2 7.2E+02 0.016 24.8 10.8 37 249-285 87-123 (239)
63 PF00344 SecY: SecY translocas 24.2 2E+02 0.0044 29.8 6.6 92 81-172 199-320 (346)
64 CHL00161 secY preprotein trans 23.4 2.1E+02 0.0045 30.7 6.7 94 81-174 256-375 (417)
65 PF04156 IncA: IncA protein; 23.1 6.1E+02 0.013 23.5 12.0 18 188-205 82-99 (191)
66 PRK15396 murein lipoprotein; P 23.1 2.6E+02 0.0056 23.1 5.7 31 187-217 32-62 (78)
67 TIGR03042 PS_II_psbQ_bact phot 22.7 6E+02 0.013 23.3 9.1 23 257-279 91-113 (142)
68 PF05377 FlaC_arch: Flagella a 22.7 2.6E+02 0.0056 21.6 5.2 32 254-285 3-34 (55)
69 PF07798 DUF1640: Protein of u 22.6 6.3E+02 0.014 23.5 10.1 26 262-287 128-153 (177)
70 PF00170 bZIP_1: bZIP transcri 22.3 2.8E+02 0.0061 21.2 5.6 34 251-284 26-59 (64)
71 PF15190 DUF4583: Domain of un 21.9 4.3E+02 0.0093 23.7 7.1 24 81-104 64-87 (128)
72 PRK15422 septal ring assembly 21.8 3.1E+02 0.0066 22.7 5.8 26 251-276 18-43 (79)
73 COG3763 Uncharacterized protei 21.7 1.5E+02 0.0033 24.0 3.9 29 11-40 8-36 (71)
74 PF02646 RmuC: RmuC family; I 21.7 2.9E+02 0.0063 28.2 7.1 59 251-310 31-95 (304)
75 PF08317 Spc7: Spc7 kinetochor 21.2 8.7E+02 0.019 24.9 10.6 20 85-104 59-78 (325)
76 KOG0972 Huntingtin interacting 21.0 7.6E+02 0.016 25.6 9.5 23 189-211 264-286 (384)
77 PRK10884 SH3 domain-containing 20.5 7.8E+02 0.017 23.8 10.5 30 254-283 128-157 (206)
78 PRK09204 secY preprotein trans 20.5 2.4E+02 0.0052 30.4 6.5 45 126-170 338-383 (426)
79 COG3817 Predicted membrane pro 20.4 3.7E+02 0.0081 27.3 7.1 43 114-172 33-75 (313)
80 TIGR03545 conserved hypothetic 20.2 5.3E+02 0.012 28.9 9.2 35 251-285 219-257 (555)
81 PRK09973 putative outer membra 20.2 3.2E+02 0.0069 23.0 5.7 32 187-218 31-62 (85)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-136 Score=1009.96 Aligned_cols=460 Identities=54% Similarity=0.912 Sum_probs=439.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhHHhHH
Q 012223 4 GIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLF 83 (468)
Q Consensus 4 ~~~~~~~~~~~~s~~~~f~~g~~f~~~~l~~dY~i~~~~~~~lFs~tfalS~~l~eLil~EI~~~~~~~~R~~~w~~tl~ 83 (468)
+|...|+.++.+|+.+||.+||||++|++||+||+||+.+|.+||+|||+||+++|||+|||.|++++++|..+|+.++.
T Consensus 3 ~~~~~d~~vv~~Sl~lff~~gw~f~~k~lfk~ye~~~~~Vq~Ifs~tfa~sc~lfeliifeii~vl~~~sr~~~w~~~l~ 82 (462)
T KOG2417|consen 3 GWDIYDAWVVIGSLILFFAAGWLFYNKQLFKNYEVHNRVVQFIFSVTFAFSCSLFELIIFEIIDVLSPESRMFCWKVCLS 82 (462)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeehhHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHhHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccchhhheehhhHHHHHH
Q 012223 84 CLILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAV 163 (468)
Q Consensus 84 ~Ll~lLivviP~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~F~~~G~~~p~~~~~~~~~~~~~~lsRvgViGVtlmAi 163 (468)
++++++++++|+|+||+++++.++++.++.++++.+|.+++|+|||+|||+|+++++||++++||.++||||||||+||+
T Consensus 83 ~ill~lv~~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAv 162 (462)
T KOG2417|consen 83 LILLTLVFMIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAV 162 (462)
T ss_pred HHHHHHHHHHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHH
Confidence 99999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceecc
Q 012223 164 LAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS 243 (468)
Q Consensus 164 LSGfgaVstPy~~~~~f~r~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (468)
||||||||+||+|+++|.|||+|.||.++||||.||+||+++||||++.+|.+ +++..+++.++.++++.|.+++..++
T Consensus 163 LSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k~pSff~r~w~~~~~~ 241 (462)
T KOG2417|consen 163 LSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQKEPSFFRRFWGMFSSS 241 (462)
T ss_pred HhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988853 22333344566788888888744445
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchheeehhhHHHHHHHHHHhhccCC
Q 012223 244 VQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAG 323 (468)
Q Consensus 244 ~~~~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~~~ 323 (468)
.++++.+++++.||+|+++||+++||||+|+.||+++++|.++|||++|+++|++||+||+||||||+++++|++|||++
T Consensus 242 ~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFdrvG 321 (462)
T KOG2417|consen 242 VQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFDRVG 321 (462)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhhhcc
Confidence 56666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH
Q 012223 324 SVDPVTMTISIFLQFFDIGINAQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFV 403 (468)
Q Consensus 324 ~~Dpit~~L~~~~~~~~~~~d~~~~s~~ISf~L~G~liv~S~r~~L~tl~~~f~~~ss~~s~~~~~ivL~laelmG~Yfi 403 (468)
++||+||++++.++++|++.|++.|+|||||+|+|+|+++|+||.|.|++||+++.++++++|. ++|+++|+|||||+
T Consensus 322 k~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~--ivl~l~qimgmyf~ 399 (462)
T KOG2417|consen 322 KVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNI--IVLFLAQIMGMYFV 399 (462)
T ss_pred CcCCccceeEEEEEEecccchHHHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccc--hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHhcCCccccchhhhhhHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 012223 404 SSILLIRKSLAIEYRIIITEVLGGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPI 467 (468)
Q Consensus 404 St~LLiRsnLP~~~~~~i~~~Lg~~l~f~f~~~wFD~iFliSa~~T~~~i~~~~~~~~~~~~~~ 467 (468)
|+++|||+|+|.|||.++||+|| +++|||||||||.+|++||+.|+++++++||.+++|+||.
T Consensus 400 ssvllirms~p~Eyr~iit~VlG-dlqfnfyhRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a~ 462 (462)
T KOG2417|consen 400 SSVLLIRMSMPAEYRTIITEVLG-DLQFNFYHRWFDVIFLVSALSSILFLYLHHKSRQSDKHAI 462 (462)
T ss_pred HHHHHHhhcChHHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 99999999999999999999999 8999999999999999999999999999999999998873
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=1.6e-53 Score=404.98 Aligned_cols=179 Identities=46% Similarity=0.778 Sum_probs=172.3
Q ss_pred HHHhccCchhhhHHHHhchheeehhhHHHHHHHHHHhhcc---------------CCCCChHHHHHHHHHhhccccccHH
Q 012223 282 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 346 (468)
Q Consensus 282 ~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~---------------~~~~Dpit~~L~~~~~~~~~~~d~~ 346 (468)
||+++++|++||+++++||+|++||+|||+++++|+++++ .+++||+|++++++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5788999999999999999999999999999999999877 7799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhc
Q 012223 347 LLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLG 426 (468)
Q Consensus 347 ~~s~~ISf~L~G~liv~S~r~~L~tl~~~f~~~ss~~s~~~~~ivL~laelmG~YfiSt~LLiRsnLP~~~~~~i~~~Lg 426 (468)
+|+|||||+|+|+|++||+|+++.|+.++++++++..+.+..+++|++||+||+||+||++|||+|||+|++++++++||
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg 160 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILG 160 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998654469999999999999999999999999999999999999
Q ss_pred --CCccccchhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 012223 427 --GEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSR 460 (468)
Q Consensus 427 --~~l~f~f~~~wFD~iFliSa~~T~~~i~~~~~~~ 460 (468)
+++|++|||+|||.+|++||++|++++|++||.|
T Consensus 161 ~~~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 161 ENSLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999976
No 3
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.90 E-value=8e-25 Score=176.16 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.1
Q ss_pred CccccccchhhheehhhHHHHHHhhccccccccccccchhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 141 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 211 (468)
Q Consensus 141 ~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstPy~~~~~f~r~v~-~~dI~~~e~~l~~t~~~i~~Kk~~l~ 211 (468)
|+++++|++++||||+|||+||+|||||||||||++|++|+||++ |.||+++|++++||.|++.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999999999999999999 99999999999999999999998863
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=97.72 E-value=0.0073 Score=64.81 Aligned_cols=158 Identities=17% Similarity=0.310 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh--hhHHH--HHHHHHHHHHHHHHHHHHHHhhcc--------------Cccchhhhhh
Q 012223 17 LILLGWAGLWFLNIRLYKEYEEK--RALVQ--IIFSVVFAFSCNLLQLVLFEIIPI--------------LSKEARVVNW 78 (468)
Q Consensus 17 ~~~~f~~g~~f~~~~l~~dY~i~--~~~~~--~lFs~tfalS~~l~eLil~EI~~~--------------~~~~~R~~~w 78 (468)
.++.+.+.++++.|. .+.+.+ +..+. ..|+.+++++.++ |+=.++... .+.+.-...|
T Consensus 6 ~~~l~~~~~~~l~~y--~~~~~~~~~~~~~~~~~~~~~~~~~~vl--llP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~W 81 (471)
T PF04791_consen 6 FIILLLIAIYLLRRY--QHPDDSNTSWFVKIIVFLGLTLSFSIVL--LLPLDVANNEILSSYDSSYPGQWLNTSLMEVLW 81 (471)
T ss_pred HHHHHHHHHHHHHHh--cCchhcCCchhHHHHHHHHHHHHHHHHH--hcChhhhcccccccCCCCCCcccCCchHHHHHH
Confidence 344444555553332 344444 34433 4455555555444 555566551 1223345579
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhcCCccch---hHH--------HHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 012223 79 KVDLFCLILLLVFMLPYYHCYLMLCNSGVRKE---RAA--------LGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIP 147 (468)
Q Consensus 79 ~~tl~~Ll~lLivviP~~i~~~l~~~~~~~~~---~~~--------~~~~~~~~~~l~~F~~~G~~~p~~~~~~~~~~~~ 147 (468)
+..-....++.-+++||.+.|.=...+....+ ++. +...+..+.+.+....++...-......++ ..
T Consensus 82 ~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~~~i~~~~~~~~~~~~d~~~~~~~~~~~~--~~ 159 (471)
T PF04791_consen 82 YIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIFAIIVGILLIYLLAILDYSESTLSSFSSL--LP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHH--HH
Confidence 99999999999999999999976544422111 111 111111122222222211100000000011 11
Q ss_pred chhhheehhhHHHHHHhhccccccccccccchh
Q 012223 148 QLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 180 (468)
Q Consensus 148 ~~lsRvgViGVtlmAiLSGfgaVstPy~~~~~f 180 (468)
=+++=....|..++.++-|+|=|.-|-.....+
T Consensus 160 ~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 160 FLIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 245566789999999999999999998866543
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=87.69 E-value=8.9 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 248 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
++.+.|++|.+||..|.. +|+.+=.+++.+.++.
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 355679999999987765 5555555555555543
No 6
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=16 Score=34.25 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=24.5
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 179 LFIREIDESEIKALERQLMQSIETCIAKKKKIILCQ 214 (468)
Q Consensus 179 ~f~r~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~ 214 (468)
.|.+|-.+..++...|.|+.|...|...|++++..+
T Consensus 3 iF~Kktvke~~ren~ReLRkt~RdierdRr~me~~E 38 (208)
T KOG3231|consen 3 IFKKKTVKEVIRENNRELRKTQRDIERDRRAMEKQE 38 (208)
T ss_pred cccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 355664455577777888888888877776655444
No 7
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=73.98 E-value=11 Score=34.23 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 13 VTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFE 64 (468)
Q Consensus 13 ~~~s~~~~f~~g~~f~~~~l~~dY~i~~~~~~~lFs~tfalS~~l~eLil~E 64 (468)
++.|.+..|++||++.. ..+ ..-+...|+++|+.+|+-+...|++++=
T Consensus 85 ilvsv~~~~~~~~~~~~-~~~---~~~~~~~Rvllgl~~al~vlvAEv~l~~ 132 (142)
T PF11712_consen 85 ILVSVFAVFFAGWYWAG-YSF---GGWSFPYRVLLGLFGALLVLVAEVVLYI 132 (142)
T ss_pred HHHHHHHHHHHHHHHHH-Hhh---cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999998833 333 1135568999999999999999998874
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.91 E-value=61 Score=37.15 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=36.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012223 2 GWGIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLV 61 (468)
Q Consensus 2 ~~~~~~~~~~~~~~s~~~~f~~g~~f~~~~l~~dY~i~~~~~~~lFs~tfalS~~l~eLi 61 (468)
+|+.+++.. .|+.-..=|++=.|+| .|..|.-|..+ ++.||+.|.+-+.+.-+|
T Consensus 36 ~w~~~~~~d-~~~~~r~e~~~p~wl~-~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~ 89 (697)
T PF09726_consen 36 VWALVLLAD-FMLEFRFEYLWPFWLL-LRSVYDSFKYQ----GLAFSVFFVCIAFTSDLI 89 (697)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHH-HHHHHHHHhhh----hhHHHHHHHHHHHHHHHH
Confidence 466655522 5566666777888888 88888777775 667888886655554443
No 9
>PRK11637 AmiB activator; Provisional
Probab=57.68 E-value=91 Score=33.25 Aligned_cols=31 Identities=3% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 186 ESEIKALERQLMQSIETCIAKKKKIILCQME 216 (468)
Q Consensus 186 ~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~ 216 (468)
+.++.+.++++....+.+.+.++++...+.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766666655444444444433
No 10
>PRK09039 hypothetical protein; Validated
Probab=55.21 E-value=1.1e+02 Score=32.02 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchH
Q 012223 391 VLFLSEIMGMYFVSSILLIRKSLAIE 416 (468)
Q Consensus 391 vL~laelmG~YfiSt~LLiRsnLP~~ 416 (468)
+.-+|+-=+..+.-.++ ...+|++
T Consensus 285 N~~LS~~RA~aV~~~Li--~~Gi~~~ 308 (343)
T PRK09039 285 NWELSSARAISVVKFLI--ALGVPAD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCHH
Confidence 66666666666655544 5677766
No 11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=55.13 E-value=37 Score=36.75 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchhe
Q 012223 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYAL 302 (468)
Q Consensus 254 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~f 302 (468)
++|++.++.||.=.+.|+.+|.++++.......+.|=.|+-..++.+-|
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~ 337 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSF 337 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHH
Confidence 6899999999999999999999999988887777777786655555444
No 12
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=54.19 E-value=1.3e+02 Score=25.04 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012223 183 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (468)
Q Consensus 183 ~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~ 217 (468)
..|+++-...++-.....+....-|.++...+.++
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l 75 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQEL 75 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777766666555555444444444444444443
No 13
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.85 E-value=1.1e+02 Score=31.40 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012223 184 IDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (468)
Q Consensus 184 v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~ 218 (468)
.+..+++.+.+.+......+.++|++++.++.+..
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777777777666665544
No 14
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.56 E-value=4.8e+02 Score=30.63 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=79.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHhhccCcc--
Q 012223 5 IAIYEGTVVTGSLILLGWAGLWF-LNIRLYKEYEEKRA----------LVQIIFSVVFAFSCNLLQLVLFEIIPILSK-- 71 (468)
Q Consensus 5 ~~~~~~~~~~~s~~~~f~~g~~f-~~~~l~~dY~i~~~----------~~~~lFs~tfalS~~l~eLil~EI~~~~~~-- 71 (468)
|+.+|..|+++|.+...+..+.- +....-++++..+. -...+|..+.|..+-+.-+=+|....+-..
T Consensus 500 wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~ 579 (798)
T KOG3599|consen 500 WNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMS 579 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 78889999999999888877765 67777766777653 356677777777777777777877776532
Q ss_pred ---chhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012223 72 ---EARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGV 107 (468)
Q Consensus 72 ---~~R~~~w~~tl~~Ll~lLivviP~~i~~~l~~~~~~ 107 (468)
++-...|+=....-+..+|+..++.+...++.+...
T Consensus 580 ~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v 618 (798)
T KOG3599|consen 580 QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 446678999998999999999999999888877533
No 15
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.31 E-value=1.2e+02 Score=35.80 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 287 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s 287 (468)
+.--|.+|++.+..--++...|-.+|+...-|+..+
T Consensus 1093 ~~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~a 1128 (1243)
T KOG0971|consen 1093 DSPLLLQQINALRNAISQERHERSILKGAQMRASLA 1128 (1243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 345677888888888888788888888777776543
No 16
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.08 E-value=2.4e+02 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
+++.+|+++++.++...+++.--+.+|....++
T Consensus 84 ~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 84 QELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555554
No 17
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=45.89 E-value=69 Score=32.93 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=33.6
Q ss_pred ccchhhheehhhHHHHHHhhcccccc-ccccccchhhccCCHHH---HHHHHHHHHH
Q 012223 146 IPQLVSRIGVIGVTVMAVLAGFGAVN-LPYSYLSLFIREIDESE---IKALERQLMQ 198 (468)
Q Consensus 146 ~~~~lsRvgViGVtlmAiLSGfgaVs-tPy~~~~~f~r~v~~~d---I~~~e~~l~~ 198 (468)
|++.++++|-=-|+. |+=||++=.| +.-++.+-|.+.+.+.| ++.++++|+.
T Consensus 1 MD~lLak~~~QAvtf-AIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~ 56 (302)
T PF05508_consen 1 MDELLAKAGSQAVTF-AIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLES 56 (302)
T ss_pred ChHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 356677777666665 8888887443 34455666777888875 5555555553
No 18
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=45.44 E-value=46 Score=26.59 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
+++.+|+.|+.-|.....++-.|||||-.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999864
No 19
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.29 E-value=1.8e+02 Score=29.13 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceeccccCccchHHHHHHHHHHHHHHH
Q 012223 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 265 (468)
Q Consensus 186 ~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~ 265 (468)
+..+.++|+.+..-...+.+=-.|++.+++++++ +- .++.+++-|++.+.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~----------------Lr-------------G~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS----------------LR-------------GQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------------Hh-------------hHHHHHHHHHHHHHH
Confidence 4456667766665444444333466666655443 11 144577788888888
Q ss_pred HHHHHHHHHHHHHH
Q 012223 266 LSKQLFLEIYELRQ 279 (468)
Q Consensus 266 l~~~l~~el~~L~~ 279 (468)
=.+++|.|+.+..+
T Consensus 90 rq~~~y~dld~r~~ 103 (263)
T PRK10803 90 RQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999988553
No 20
>PRK11637 AmiB activator; Provisional
Probab=42.81 E-value=2.3e+02 Score=30.17 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
++++.++.|++.+++=-..+..++.+.+
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444433333344444433
No 21
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=42.18 E-value=64 Score=34.82 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--------ccchhHH----HHHHHHHHHHHH------------HHHHhCCCCC-
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCNSG--------VRKERAA----LGAILFLLAFLY------------AFWRMGIHFP- 135 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~~~--------~~~~~~~----~~~~~~~~~~l~------------~F~~~G~~~p- 135 (468)
..+.+...-++..|-.++..+ .+.. +...... -..++.+..|+| .+-|-|.++|
T Consensus 272 vmPiIFAssll~~p~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPG 350 (434)
T PRK12907 272 VIPVIFASAFLMTPRTIAQLF-PDSSVSKWLVANLDFAHPIGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPG 350 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCC
Confidence 467778888888898887654 1111 1111111 111222233332 2347899999
Q ss_pred CCCCCCccccccchhhheehhhHHHHHHhhcccccc
Q 012223 136 MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 171 (468)
Q Consensus 136 ~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVs 171 (468)
+.+++++.-++++.++|++++|-..+|++++....-
T Consensus 351 iRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~ 386 (434)
T PRK12907 351 IRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVF 386 (434)
T ss_pred cCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445577778899999999999999999999875543
No 22
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.41 E-value=1.9e+02 Score=25.42 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 287 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s 287 (468)
+.+..++.+|..||+=...+...+.++++..++...+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667778888888888888888888877766554
No 23
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.67 E-value=2.4e+02 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
..+..++.+|+.|++-...+..++.++++..++
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655443
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.51 E-value=2.5e+02 Score=33.77 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhhHH
Q 012223 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR-TWRGHMQ 295 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~-T~~Gr~~ 295 (468)
+..++.|++|++.+|....+|-.|+.++++...+.+..+ +.+|+..
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~ 446 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEIL 446 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356889999999999999999999999887655555433 3445443
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.84 E-value=3.6e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 253 IKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 253 i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
+++|++|-+.|++--..+..|+.+++.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444333344444444433
No 26
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.38 E-value=3.2e+02 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
+++.+++.|.+.+++.+.+.+.+.++++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555444444444
No 27
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=38.75 E-value=2.1e+02 Score=27.15 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 012223 250 EQDIKIMEAEVQALEELSKQ---LFLEIYELRQAKEA 283 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~---l~~el~~L~~~~~r 283 (468)
+++|++|+.||+.||++.+. |-..-..++.+.++
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888877777443 33344444444443
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.63 E-value=3.1e+02 Score=29.57 Aligned_cols=21 Identities=38% Similarity=0.211 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012223 194 RQLMQSIETCIAKKKKIILCQ 214 (468)
Q Consensus 194 ~~l~~t~~~i~~Kk~~l~~~~ 214 (468)
+++.++...+.++.+++...+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433
No 29
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=1.7e+02 Score=33.68 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=42.0
Q ss_pred Hhhccc---cccccccc------cchhhccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhh
Q 012223 163 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDR 219 (468)
Q Consensus 163 iLSGfg---aVstPy~~------~~~f~r~v~~~dI~~~e~~l~~t~~~i~~Kk---~~l~~~~~~~~~ 219 (468)
+=||.| +||+-|.- |+.-.+-|+|.||+..|.-.+.|.+.+++++ +|++..-.+++-
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEi 421 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEI 421 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhh
Confidence 348888 78887763 3334678999999999999999999998854 466555555543
No 30
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.10 E-value=2.7e+02 Score=23.59 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
.+..++.+++.+++=...+..++.+++...++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556665554443
No 31
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=35.96 E-value=2.6e+02 Score=24.67 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----hccCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 012223 348 LSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV-----SRVGSGSSSNVVLFLSEIMGMYFVSSILLIR 410 (468)
Q Consensus 348 ~s~~ISf~L~G~liv~S~r~~L~tl~~~f~~~-----ss~~s~~~~~ivL~laelmG~YfiSt~LLiR 410 (468)
.+|++.+..+-++.+++.-=+.......+... +...+.+..-+++-+-|+.-+|.++++++|=
T Consensus 4 ~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~ 71 (124)
T PF03350_consen 4 ASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIF 71 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888777777777555544443333333 2222222223678888999999999999884
No 32
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=35.55 E-value=3.4e+02 Score=24.61 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012223 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 219 (468)
Q Consensus 186 ~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~ 219 (468)
+.||++++.++-.+...+-.||..++.+..++..
T Consensus 21 ~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 21 DEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4568999999988888888888888887765543
No 33
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.03 E-value=2.8e+02 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 189 IKALERQLMQSIETCIAKKKKIILCQ 214 (468)
Q Consensus 189 I~~~e~~l~~t~~~i~~Kk~~l~~~~ 214 (468)
...+|.+..++.|.|.-=+-+++.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666644433444443
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.36 E-value=4e+02 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 184 IDESEIKALERQLMQSIETCIAKKKKIILCQ 214 (468)
Q Consensus 184 v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~ 214 (468)
+++.++..+...+....+-+.+-+++...++
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666665554444444433433343
No 35
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=32.26 E-value=1.3e+02 Score=32.21 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-----------ccc-hhH---HHHHHHHHHHHHH------------HHHHhCCC
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCNSG-----------VRK-ERA---ALGAILFLLAFLY------------AFWRMGIH 133 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~~~-----------~~~-~~~---~~~~~~~~~~~l~------------~F~~~G~~ 133 (468)
..+.+...-++..|..++..+-+..+ +.. +.. .-...+.+..|.| .+=|-|.+
T Consensus 240 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 240 GMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCc
Confidence 46778888888889887765421110 111 011 1111223333333 34567888
Q ss_pred CC-CCCCCCccccccchhhheehhhHHHHHHhhccccc
Q 012223 134 FP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (468)
Q Consensus 134 ~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaV 170 (468)
+| +.+++.+.-++++.+.|++.+|-..+|++++.-.+
T Consensus 320 IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~ 357 (404)
T PRK12417 320 IPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLY 357 (404)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 44556777789999999999999999999996444
No 36
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.09 E-value=2.3e+02 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 184 IDESEIKALERQLMQSIETCIAKKKK 209 (468)
Q Consensus 184 v~~~dI~~~e~~l~~t~~~i~~Kk~~ 209 (468)
.+-.|+..+|+++..++.-+.++|.+
T Consensus 46 Ls~~eL~~LE~~Le~aL~~VR~rK~~ 71 (100)
T PF01486_consen 46 LSLKELQQLEQQLESALKRVRSRKDQ 71 (100)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34455666777777666666655544
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.78 E-value=1.3e+02 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
+.|.-|+.||+.|++=.++|..|..+++..
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~ 47 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 457889999999999999998888876643
No 38
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.52 E-value=4.6e+02 Score=24.94 Aligned_cols=89 Identities=15% Similarity=0.269 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-CccchhhhhhHHhHH
Q 012223 5 IAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPI-LSKEARVVNWKVDLF 83 (468)
Q Consensus 5 ~~~~~~~~~~~s~~~~f~~g~~f~~~~l~~dY~i~~~~~~~lFs~tfalS~~l~eLil~EI~~~-~~~~~R~~~w~~tl~ 83 (468)
.+.+|+..++.+...+..+-..+|...--..| .++.=+..++...++...+.....- .+...|...|+..+.
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~-------gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~ 152 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIMGFFSPKNSNQY-------GIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILI 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------cHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 35667765555544433333333343222222 2222222222223333444443332 455678899988777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012223 84 CLILLLVFMLPYYHCYL 100 (468)
Q Consensus 84 ~Ll~lLivviP~~i~~~ 100 (468)
.++..++.+.=+.....
T Consensus 153 ~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 153 SVLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666655444444443
No 39
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=31.43 E-value=61 Score=24.04 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFL 272 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~ 272 (468)
...++|+.|+..|.++.+.||.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 3567999999999999999875
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.48 E-value=4.4e+02 Score=27.23 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012223 185 DESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (468)
Q Consensus 185 ~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~ 218 (468)
+..+..++...+......+..||+++...+.+.+
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666667766666665544
No 41
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.43 E-value=2.1e+02 Score=31.68 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhc
Q 012223 256 MEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLG 299 (468)
Q Consensus 256 L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g 299 (468)
++.|+..++.-=..+-.+..+|+...++. -|+-.+||-.|+.|
T Consensus 465 ~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~-ISk~y~gR~VnimG 507 (507)
T PF05600_consen 465 AQEEQQELEPKLDALVERTRELQKQIEAD-ISKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeeeccC
Confidence 33333333333333333344444444333 34557788777665
No 42
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.05 E-value=4.9e+02 Score=27.35 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchheeehhhHHHHHH
Q 012223 262 ALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 313 (468)
Q Consensus 262 ~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~s 313 (468)
++|+.-.-+. .=+++....++++||+.| ++|..+.+|-+..+++.
T Consensus 137 ~iEsTYyll~---~YlKk~l~Dp~~~~~~lG----vPG~~lLiy~i~~l~~~ 181 (344)
T PF04123_consen 137 GIESTYYLLG---RYLKKALSDPEYRRTFLG----VPGLILLIYAILALLGY 181 (344)
T ss_pred CcHHHHHHHH---HHHHHhhcChhhhceeec----chHHHHHHHHHHHHHcc
Confidence 6666543321 224667888999999999 89999999999887654
No 43
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=28.88 E-value=23 Score=32.71 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred CchhhhHHHHhchheeehhhHHHHHHHHHHhhccCCCCChH
Q 012223 288 RTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 328 (468)
Q Consensus 288 ~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~~~~~Dpi 328 (468)
+|..+-.....+-+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 344444445677889999987 8888888885
No 44
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=28.65 E-value=7.6e+02 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=20.3
Q ss_pred CchhhhHHHHhchheeehhhHHHHHHHH
Q 012223 288 RTWRGHMQNLLGYALSIYCVYKMIKSLQ 315 (468)
Q Consensus 288 ~T~~Gr~~~~~g~~fsiYCvyKI~~s~i 315 (468)
.+++.-+.++.+.+.++-.|-=++.+++
T Consensus 383 a~a~~llgk~iNiiLalm~VlLvfVSTI 410 (455)
T KOG3850|consen 383 AVARRLLGKFINIILALMTVLLVFVSTI 410 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777778888888777766666665
No 45
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=28.56 E-value=3.2e+02 Score=22.73 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEI 274 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el 274 (468)
++|+.++.||.-||.=-..||.++
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665444444444
No 46
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=28.15 E-value=4.5e+02 Score=23.70 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHhhccCccch-hhhhhHHhHHHHHHHHHH
Q 012223 15 GSLILLGWAGLWFLNIRLYKEYEEKRALV--QIIFSVVFAFSCNLLQLVLFEIIPILSKEA-RVVNWKVDLFCLILLLVF 91 (468)
Q Consensus 15 ~s~~~~f~~g~~f~~~~l~~dY~i~~~~~--~~lFs~tfalS~~l~eLil~EI~~~~~~~~-R~~~w~~tl~~Ll~lLiv 91 (468)
+.-..+...||.+-.| ++++.|++.. ...+|+.|- -+.+.--.+.+-.++..|+. |. .-...|..=..+-++
T Consensus 13 ~~s~~ll~~g~~~Ir~---~~~~~Hr~~Ml~a~~ls~lFl-v~Yl~~~~~~g~~~f~g~~~ir~-~Y~~iL~~Hi~LA~~ 87 (133)
T PF04238_consen 13 AISAVLLLIGWYFIRR---GRIKLHRKLMLTAFVLSALFL-VSYLYYHFLGGSTPFGGPGWIRP-VYLFILISHIILAIV 87 (133)
T ss_pred HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccCCCccHHH-HHHHHHHHHHHHHHH
Confidence 3344566788888555 7888888743 333444432 22222333344444444443 55 444555555555566
Q ss_pred HHHHHHH
Q 012223 92 MLPYYHC 98 (468)
Q Consensus 92 viP~~i~ 98 (468)
..|+...
T Consensus 88 ~~pL~l~ 94 (133)
T PF04238_consen 88 ALPLVLY 94 (133)
T ss_pred HHHHHHH
Confidence 6666433
No 47
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.95 E-value=3.9e+02 Score=22.94 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012223 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (468)
Q Consensus 182 r~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~ 218 (468)
+.++.+|+...++++.+. .+|+...|.+++
T Consensus 30 ~~a~~~~~~~l~~~~~~~-------~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEH-------DRRLQALETKLE 59 (106)
T ss_pred hhccHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 456778888877666542 346666666554
No 48
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.93 E-value=6.5e+02 Score=25.51 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEE 265 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~ 265 (468)
++++++++||+.+++
T Consensus 80 ~eik~l~~eI~~~~~ 94 (265)
T COG3883 80 AEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665554
No 49
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=27.87 E-value=1.5e+02 Score=31.59 Aligned_cols=92 Identities=11% Similarity=0.195 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC----------ccc-hhH---HHHHHHHHHHHHHHH------------HHhCCCC
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCNSG----------VRK-ERA---ALGAILFLLAFLYAF------------WRMGIHF 134 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~~~----------~~~-~~~---~~~~~~~~~~~l~~F------------~~~G~~~ 134 (468)
..+.+...-++..|..+...+-++.+ +.. +.. .-...+.+..+.|.+ -|-|.++
T Consensus 253 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~lii~Fs~f~~~~~~~p~~iA~~lkk~g~~I 332 (410)
T TIGR00967 253 VIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLNPEDMAKNLKKQGMFI 332 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcC
Confidence 46778888888888877665422211 110 011 111223344444433 3678888
Q ss_pred C-CCCCCCccccccchhhheehhhHHHHHHhhccccccc
Q 012223 135 P-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 172 (468)
Q Consensus 135 p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 172 (468)
| ..+++++..++++.+.|++++|-..+|++++....-.
T Consensus 333 pGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~ 371 (410)
T TIGR00967 333 PGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLG 371 (410)
T ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 4445666778999999999999999999998866543
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.50 E-value=2.2e+02 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
+.|..|+.|++-|++=..++..+-.+|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567778888777776555555444444
No 51
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.32 E-value=3.4e+02 Score=29.61 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 286 (468)
+++.+..+|++.=|++..+|+.|+..+-....|..|
T Consensus 352 qdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y 387 (521)
T KOG1937|consen 352 QDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY 387 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH
Confidence 445555566777778888888888887664444444
No 52
>PRK10869 recombination and repair protein; Provisional
Probab=27.08 E-value=3.2e+02 Score=30.42 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
++.+++|++|++.+++--..+..+|++.|.
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777766666666666666554
No 53
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=26.54 E-value=1.8e+02 Score=28.08 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=56.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceecc----ccCccchHHHHHH
Q 012223 181 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS----VQDDQKEQDIKIM 256 (468)
Q Consensus 181 ~r~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~L 256 (468)
.|..+..++..+|+.+..-..+=-.+|.+|+..- .++. |.+..||.+ |.....+.+...|
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L-gL~p---------------RQVavWFQNRRARwK~kqlE~d~~~L 117 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL-GLQP---------------RQVAVWFQNRRARWKTKQLEKDYESL 117 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhh-CCCh---------------hHHHHHHhhccccccchhhhhhHHHH
Confidence 4567888888888888765433333333443211 0110 111123322 4444466788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012223 257 EAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (468)
Q Consensus 257 ~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 286 (468)
+.+.+.|..=...|..|..+++.+..+...
T Consensus 118 k~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 118 KRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999987766543
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.97 E-value=5.5e+02 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 188 EIKALERQLMQSIETCIAKKKKIILCQM 215 (468)
Q Consensus 188 dI~~~e~~l~~t~~~i~~Kk~~l~~~~~ 215 (468)
||++.+.++.++-+.+...+++|+..+.
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3555555555555555555555554443
No 55
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=25.47 E-value=2e+02 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012223 254 KIMEAEVQALEELSKQLFLEIYE 276 (468)
Q Consensus 254 ~~L~~Ei~~Le~l~~~l~~el~~ 276 (468)
+.++.|+++|+.+..+|+.++.+
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999887765
No 56
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=25.19 E-value=4.6e+02 Score=25.79 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 254 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
+.|+.+.+-|+.....+-.++..|..+..|.+
T Consensus 188 ~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~ 219 (251)
T PF09753_consen 188 QILKEDNKVLDRTEEGLDRNLSSLKRESKRLK 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888886554443
No 57
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=25.10 E-value=5.4e+02 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Q 012223 255 IMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRG 292 (468)
Q Consensus 255 ~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~G 292 (468)
+-+.+++++|.=-.++-..+.+.....+.....+.+.|
T Consensus 46 ~R~~~v~~~~~Ki~elkr~lAd~v~~~k~~~~~~dptG 83 (428)
T PF00846_consen 46 QRQSVVSALQDKIAELKRQLADRVAAGKQSAKPVDPTG 83 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 33556666666555666666666554444444444444
No 58
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.78 E-value=4e+02 Score=21.94 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
+++..++.|++.|+.-...+-.++.+++..
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666655556555543
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.59 E-value=6.7e+02 Score=24.55 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 255 IMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 255 ~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
.|+.+.+.++..-.+...++.+++++.+..+
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444443344444444444444433
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.50 E-value=3.7e+02 Score=32.84 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
.++..|+.|.++|..+.++|-.++.+++
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899999988888888766666655
No 61
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.33 E-value=2.2e+02 Score=28.41 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
.++..|++||..|.-.-.++..|+.+++++++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356788888886665555556667776655444
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.20 E-value=7.2e+02 Score=24.77 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 249 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
+..+.++|+.|++.++.=..++-.|+.++..+++..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887777777777777776655544
No 63
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=24.15 E-value=2e+02 Score=29.80 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-------c------cchhHHHHHH-HHHHHHHHHHH---------------HhC
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCNSG-------V------RKERAALGAI-LFLLAFLYAFW---------------RMG 131 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~~~-------~------~~~~~~~~~~-~~~~~~l~~F~---------------~~G 131 (468)
..+.+...-++..|-++...+-+... + +.+...-... ++.+.++-.|| |-|
T Consensus 199 ~mPiifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g 278 (346)
T PF00344_consen 199 VMPIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSG 278 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTT
T ss_pred cchHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhC
Confidence 57888888889999988877754421 1 1111111111 12222222233 448
Q ss_pred CCCC-CCCCCCccccccchhhheehhhHHHHHHhhccccccc
Q 012223 132 IHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 172 (468)
Q Consensus 132 ~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 172 (468)
+++| ..+++.+..++++.+.|++++|=..+|++.+..-.-.
T Consensus 279 ~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~~p~~~~ 320 (346)
T PF00344_consen 279 DYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAVLPLIFG 320 (346)
T ss_dssp SSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8888 3344667778999999999999999999887765433
No 64
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=23.39 E-value=2.1e+02 Score=30.72 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC---------ccchhHH-H---HHHHHHHHHHH------------HHHHhCCCCC
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCNSG---------VRKERAA-L---GAILFLLAFLY------------AFWRMGIHFP 135 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~~~---------~~~~~~~-~---~~~~~~~~~l~------------~F~~~G~~~p 135 (468)
..+.+...-++..|..++..+-++.. ++.+... . +..+.+..+.| .+-|-|.++|
T Consensus 256 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~Ip 335 (417)
T CHL00161 256 VMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPKDISENLQKMAVSIP 335 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCC
Confidence 46788888888889888775422211 1111111 1 11223333333 3346778888
Q ss_pred -CCCCCCccccccchhhheehhhHHHHHHhhccccccccc
Q 012223 136 -MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPY 174 (468)
Q Consensus 136 -~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstPy 174 (468)
..+++.+..++++.+.|++++|=..+|++++....-..|
T Consensus 336 GvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~ 375 (417)
T CHL00161 336 GIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESV 375 (417)
T ss_pred CcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 344445667899999999999999999999987664433
No 65
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.11 E-value=6.1e+02 Score=23.48 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012223 188 EIKALERQLMQSIETCIA 205 (468)
Q Consensus 188 dI~~~e~~l~~t~~~i~~ 205 (468)
++...++++.+..+-+.+
T Consensus 82 e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHhHHHHHHHHHHHHHH
Confidence 444444444444433333
No 66
>PRK15396 murein lipoprotein; Provisional
Probab=23.07 E-value=2.6e+02 Score=23.05 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012223 187 SEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (468)
Q Consensus 187 ~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~ 217 (468)
+|+..+..+.++.......-|...+.++.++
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555544544444443
No 67
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.74 E-value=6e+02 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012223 257 EAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 257 ~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
.+|=..+.++.+.||.++.+|..
T Consensus 91 p~dqk~a~~L~~~Lf~~L~~LD~ 113 (142)
T TIGR03042 91 PKDQKEALALAKELKDDLEKLDE 113 (142)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455788899999999999985
No 68
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.66 E-value=2.6e+02 Score=21.58 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 254 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
.++++|+..++..-..+..|..+++...++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555566666655555544
No 69
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.64 E-value=6.3e+02 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012223 262 ALEELSKQLFLEIYELRQAKEAAAYS 287 (468)
Q Consensus 262 ~Le~l~~~l~~el~~L~~~~~r~~~s 287 (468)
.+.++...+-.|+++|+.+.++.++.
T Consensus 128 ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 128 KIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888899999988887663
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.31 E-value=2.8e+02 Score=21.22 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
..+..|+.++..|+.-...|-.++..|+.+.++-
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888887665543
No 71
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=21.95 E-value=4.3e+02 Score=23.72 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q 012223 81 DLFCLILLLVFMLPYYHCYLMLCN 104 (468)
Q Consensus 81 tl~~Ll~lLivviP~~i~~~l~~~ 104 (468)
.++.=+-.+|+.+|+++.+.++-.
T Consensus 64 slPfW~wa~ifllPYLQ~FlfL~s 87 (128)
T PF15190_consen 64 SLPFWMWALIFLLPYLQLFLFLYS 87 (128)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777788777766644
No 72
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.80 E-value=3.1e+02 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYE 276 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~ 276 (468)
+.|.-|++||+-|++=..++..|...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999998888777777655
No 73
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=1.5e+02 Score=23.95 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012223 11 TVVTGSLILLGWAGLWFLNIRLYKEYEEKR 40 (468)
Q Consensus 11 ~~~~~s~~~~f~~g~~f~~~~l~~dY~i~~ 40 (468)
+.+.+++++..++|+ |+.|+.++.|=-+|
T Consensus 8 l~ivl~ll~G~~~G~-fiark~~~k~lk~N 36 (71)
T COG3763 8 LLIVLALLAGLIGGF-FIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhhC
Confidence 456667777777775 55888887776554
No 74
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.65 E-value=2.9e+02 Score=28.18 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCchhhhH--HHHhch-heeehhhHHH
Q 012223 251 QDIKIMEAEVQALEELS---KQLFLEIYELRQAKEAAAYSRTWRGHM--QNLLGY-ALSIYCVYKM 310 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~---~~l~~el~~L~~~~~r~~~s~T~~Gr~--~~~~g~-~fsiYCvyKI 310 (468)
++...|+.++..|.+.. .+|..|..+|.+... ....+--+|-+ -+++.- ++--+|-|..
T Consensus 31 ~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~-~~k~rG~wGE~~Le~iLe~~gl~~~~~y~~ 95 (304)
T PF02646_consen 31 EEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK-NSKTRGNWGEMQLERILEDSGLPEGCDYET 95 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHcCCCcccchhh
Confidence 34568888999999998 888889999888777 33333333432 223332 3667777754
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.19 E-value=8.7e+02 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 012223 85 LILLLVFMLPYYHCYLMLCN 104 (468)
Q Consensus 85 Ll~lLivviP~~i~~~l~~~ 104 (468)
.+.-..+=+|.+..|-..++
T Consensus 59 ~~~A~~~~~P~Lely~~~c~ 78 (325)
T PF08317_consen 59 YVVAGYCTVPMLELYQFSCR 78 (325)
T ss_pred HHHHhccCChHHHHHHHHHH
Confidence 34444556688888887766
No 76
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.96 E-value=7.6e+02 Score=25.58 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012223 189 IKALERQLMQSIETCIAKKKKII 211 (468)
Q Consensus 189 I~~~e~~l~~t~~~i~~Kk~~l~ 211 (468)
|..-|+.++.-+.-+++|-|+..
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~ 286 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRAT 286 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888877777777666543
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.55 E-value=7.8e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 254 KIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 254 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
++.+++++.|++=..+|..|+.+++++.+.
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665555666666665555443
No 78
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=20.51 E-value=2.4e+02 Score=30.35 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHHHhCCCCC-CCCCCCccccccchhhheehhhHHHHHHhhccccc
Q 012223 126 AFWRMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (468)
Q Consensus 126 ~F~~~G~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaV 170 (468)
.+-|-|.++| ..+++++..++++.+.|++++|-..+|++.+....
T Consensus 338 ~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~ 383 (426)
T PRK09204 338 NLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEI 383 (426)
T ss_pred HHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3446778888 33445566789999999999999999999988655
No 79
>COG3817 Predicted membrane protein [Function unknown]
Probab=20.45 E-value=3.7e+02 Score=27.28 Aligned_cols=43 Identities=37% Similarity=0.594 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccchhhheehhhHHHHHHhhccccccc
Q 012223 114 LGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 172 (468)
Q Consensus 114 ~~~~~~~~~~l~~F~~~G~~~p~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 172 (468)
..+.+.|..|-+.|- .||.+|.. -+| ++|.+||++.|||-|--
T Consensus 33 ~~t~~FW~l~~~tFl-~g~~lp~~--------------viG-~ivillAliagf~~v~~ 75 (313)
T COG3817 33 FGTGLFWGLFSLTFL-GGDRLPNI--------------VIG-LIVILLALIAGFGQVKI 75 (313)
T ss_pred ecchHHHHHHHHHHh-ccccccch--------------hHh-HHHHHHHHHHhcCCccc
Confidence 455667777776665 37776621 112 67889999999998865
No 80
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.23 E-value=5.3e+02 Score=28.86 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 012223 251 QDIKIMEAEVQA----LEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 251 ~~i~~L~~Ei~~----Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
+++.+|++|++. .+++.+++..+...+++..++.+
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666654 55555555555555555444433
No 81
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.15 E-value=3.2e+02 Score=22.96 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012223 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (468)
Q Consensus 187 ~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~ 218 (468)
+|++.+..+.++.......-|...+.++.+++
T Consensus 31 s~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~ 62 (85)
T PRK09973 31 SNVQTLNAKIARLEQDMKALRPQIYAAKSEAN 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555445544444433
Done!