Query 012223
Match_columns 468
No_of_seqs 126 out of 171
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 76.9 5.4 0.00018 25.5 4.8 28 252-279 3-30 (33)
2 3eff_K Voltage-gated potassium 67.0 24 0.00084 30.0 8.6 31 74-104 1-31 (139)
3 3lay_A Zinc resistance-associa 56.4 1.1E+02 0.0039 27.5 11.4 34 248-284 110-143 (175)
4 2v71_A Nuclear distribution pr 49.9 1.4E+02 0.0047 27.4 10.8 30 251-280 88-117 (189)
5 2zqm_A Prefoldin beta subunit 46.7 1.2E+02 0.004 24.7 9.2 35 251-285 77-111 (117)
6 3csx_A Putative uncharacterize 46.0 12 0.00041 29.9 2.6 33 248-280 12-44 (81)
7 3nmd_A CGMP dependent protein 41.3 51 0.0017 25.6 5.5 27 252-278 41-67 (72)
8 4fi5_A Nucleoprotein; structur 39.5 1.7E+02 0.0058 24.6 8.8 80 189-292 24-103 (113)
9 2js5_A Uncharacterized protein 36.9 34 0.0011 26.6 3.8 29 251-279 3-31 (71)
10 4etp_A Kinesin-like protein KA 35.5 1E+02 0.0035 31.3 8.4 28 252-279 32-59 (403)
11 2yy0_A C-MYC-binding protein; 34.2 66 0.0023 23.3 4.9 35 248-282 16-50 (53)
12 2k48_A Nucleoprotein; viral pr 33.1 2.1E+02 0.0072 23.7 9.4 74 182-279 30-103 (107)
13 2wt7_A Proto-oncogene protein 30.7 1E+02 0.0035 22.8 5.6 34 251-284 23-56 (63)
14 1fmh_A General control protein 30.4 1E+02 0.0035 19.6 4.6 27 253-279 3-29 (33)
15 1kd8_A GABH AIV, GCN4 acid bas 26.5 1.2E+02 0.0042 20.3 4.6 31 253-283 3-33 (36)
16 3ra3_B P2F; coiled coil domain 26.5 31 0.0011 21.3 1.6 13 252-264 15-27 (28)
17 1g6u_A Domain swapped dimer; d 25.7 1.1E+02 0.0037 21.1 4.3 23 249-271 18-40 (48)
18 1fxk_A Prefoldin; archaeal pro 25.0 2.6E+02 0.0088 22.1 9.1 30 251-280 72-101 (107)
19 3twe_A Alpha4H; unknown functi 24.9 83 0.0028 19.2 3.2 17 268-284 4-20 (27)
20 1t2k_D Cyclic-AMP-dependent tr 24.6 1.5E+02 0.0053 21.6 5.6 33 251-283 22-54 (61)
21 3ghg_C Fibrinogen gamma chain; 23.4 5.3E+02 0.018 26.3 11.1 30 186-215 37-66 (411)
22 3na7_A HP0958; flagellar bioge 23.1 4.6E+02 0.016 24.4 11.0 28 251-278 90-117 (256)
23 2l5g_A GPS2 protein, G protein 23.1 83 0.0028 21.3 3.3 24 251-274 15-38 (38)
24 2akf_A Coronin-1A; coiled coil 23.0 1.2E+02 0.004 19.5 3.8 28 255-282 3-30 (32)
25 2ic9_A Nucleocapsid protein; h 22.7 3.1E+02 0.011 22.3 9.2 81 188-292 6-86 (96)
26 2l2l_B Methyl-CPG-binding doma 22.2 1E+02 0.0035 20.7 3.6 17 183-199 6-22 (36)
27 2jee_A YIIU; FTSZ, septum, coi 21.9 2E+02 0.0068 22.8 5.9 49 251-299 20-76 (81)
28 3vkg_A Dynein heavy chain, cyt 21.8 3.2E+02 0.011 35.5 10.7 28 189-216 2016-2043(3245)
29 3tnu_B Keratin, type II cytosk 21.7 1.5E+02 0.005 25.1 5.6 32 252-283 44-75 (129)
30 1t3j_A Mitofusin 1; coiled coi 21.1 2E+02 0.0069 23.5 6.0 19 251-269 54-72 (96)
31 3oja_B Anopheles plasmodium-re 20.8 4.3E+02 0.015 27.2 10.4 29 186-214 462-490 (597)
32 3he5_B Synzip2; heterodimeric 20.7 1.3E+02 0.0045 20.9 4.0 30 255-284 21-50 (52)
33 3tnu_A Keratin, type I cytoske 20.2 1.6E+02 0.0056 24.9 5.6 33 251-283 45-77 (131)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.93 E-value=5.4 Score=25.55 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
+++.|+|||.+|++=-..|-.|+..+++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888887766666677776654
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=66.97 E-value=24 Score=30.01 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=16.7
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 012223 74 RVVNWKVDLFCLILLLVFMLPYYHCYLMLCN 104 (468)
Q Consensus 74 R~~~w~~tl~~Ll~lLivviP~~i~~~l~~~ 104 (468)
|..+|+-.+..++++++++.-...++..+.+
T Consensus 1 r~~~~r~~~~~~~~~~~~~~~~a~~~~~~e~ 31 (139)
T 3eff_K 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (139)
T ss_dssp CTHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666555555555555444433
No 3
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.36 E-value=1.1e+02 Score=27.49 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 248 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
+|++.+++|.+|+..|+ .++..+-.+++.+.++.
T Consensus 110 ~DeakI~aL~~Ei~~Lr---~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEMESLG---QKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 45667778877776554 46666666666655443
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=49.88 E-value=1.4e+02 Score=27.42 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
..++.|+.|+..|.....++...+.+|+..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899998888888888888887753
No 5
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.66 E-value=1.2e+02 Score=24.69 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 285 (468)
+.+..++.+|+.|++-...+..++.+++...++..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777888888876665554
No 6
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=46.02 E-value=12 Score=29.87 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 248 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
++.+++.+|++|+.-|.....++-.|||||-..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344678899999999999999999999998654
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.35 E-value=51 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
.|+.|+++++..|+.=+.|..|+++.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666653
No 8
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=39.51 E-value=1.7e+02 Score=24.56 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceeccccCccchHHHHHHHHHHHHHHHHHH
Q 012223 189 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSK 268 (468)
Q Consensus 189 I~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~l~~ 268 (468)
|..+|..+...-.-|..-|.|+..++...+. ...+.+ -.-+.+-+.++++||.--.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~--DPDevN----------------------K~tl~~R~~~Vs~lq~Kia 79 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEK--DPDELN----------------------KRTLTDREGVAVSIQAKID 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHH----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444555677777766553 100011 1123344668888888888
Q ss_pred HHHHHHHHHHHHHHHHhccCchhh
Q 012223 269 QLFLEIYELRQAKEAAAYSRTWRG 292 (468)
Q Consensus 269 ~l~~el~~L~~~~~r~~~s~T~~G 292 (468)
++-..+.+.....+.....+-+.|
T Consensus 80 eLKrqLAd~va~~k~~~k~~DPTG 103 (113)
T 4fi5_A 80 ELKRQLADRIATGKNLGKEQDPTG 103 (113)
T ss_dssp HHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcccccCCCCCCC
Confidence 888888887765544444444444
No 9
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=36.94 E-value=34 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
+++.+|++|+.-|...+.++-.||+||-.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaE 31 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAE 31 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 36789999999999999999999999864
No 10
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.50 E-value=1e+02 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
++++++++...-|.+.+.|++++.||+.
T Consensus 32 ~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 32 GMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777778889999999999874
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.23 E-value=66 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (468)
Q Consensus 248 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 282 (468)
++..+..+|++|.+.|+.=-..|-.+..+++.+.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999998888888888888877654
No 12
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.05 E-value=2.1e+02 Score=23.73 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceeccccCccchHHHHHHHHHHH
Q 012223 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 261 (468)
Q Consensus 182 r~v~~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~ 261 (468)
.|.+-+|+..+|+.+.+.-.-+..-|+|+..++.+.+. ...+.+ -.-+.+-+.|++
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~--DPDevN----------------------K~tl~~R~~~Vs 85 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEV--DPDDVN----------------------KSTLQNRRAAVS 85 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHH----------------------HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHH----------------------HHHHHHHHHHHH
Confidence 46667888888888888777777777888888877654 110011 112233455677
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012223 262 ALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 262 ~Le~l~~~l~~el~~L~~ 279 (468)
+||.=-.++-..+.+...
T Consensus 86 alq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 86 TLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666666666544
No 13
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.74 E-value=1e+02 Score=22.85 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
+.+..|+.|++.|+.-...|-.++..|+.+...-
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889888888888888888887766543
No 14
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.43 E-value=1e+02 Score=19.62 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 253 IKIMEAEVQALEELSKQLFLEIYELRQ 279 (468)
Q Consensus 253 i~~L~~Ei~~Le~l~~~l~~el~~L~~ 279 (468)
.++|++|+..-|.=..||-.|+..|+.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467888888888888887777777654
No 15
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.51 E-value=1.2e+02 Score=20.26 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 253 IKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 253 i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
+++|+.+++.|..=.+.|..|+..|+.....
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4688888888888888888888888776544
No 16
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.50 E-value=31 Score=21.29 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALE 264 (468)
Q Consensus 252 ~i~~L~~Ei~~Le 264 (468)
++++|+-||.+||
T Consensus 15 eiaaleyeiaale 27 (28)
T 3ra3_B 15 EIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 4455555555544
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.67 E-value=1.1e+02 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 012223 249 KEQDIKIMEAEVQALEELSKQLF 271 (468)
Q Consensus 249 ~~~~i~~L~~Ei~~Le~l~~~l~ 271 (468)
+.++++.|+.|.++||+--..+-
T Consensus 18 speelaaleselqalekklaalk 40 (48)
T 1g6u_A 18 SPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999988886544433
No 18
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.96 E-value=2.6e+02 Score=22.14 Aligned_cols=30 Identities=7% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 280 (468)
+....++.+|+.|++-...+-.++.+++..
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555656665555555566655543
No 19
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.85 E-value=83 Score=19.22 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012223 268 KQLFLEIYELRQAKEAA 284 (468)
Q Consensus 268 ~~l~~el~~L~~~~~r~ 284 (468)
.++|.|+.+++.+.+.-
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777888877665443
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.64 E-value=1.5e+02 Score=21.58 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
+.+..|+.+++.|++-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888877766544
No 21
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.39 E-value=5.3e+02 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 186 ESEIKALERQLMQSIETCIAKKKKIILCQM 215 (468)
Q Consensus 186 ~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~~ 215 (468)
+.||+.+|..+++..+.=-+-+..+...+.
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~ 66 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQL 66 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 457777777777654443333333444443
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.09 E-value=4.6e+02 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 278 (468)
.+..+|+.||+.++.--..+-.++.++.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655544444444433333
No 23
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.08 E-value=83 Score=21.32 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEI 274 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el 274 (468)
++|..|+.+.++|.+=.-|||+++
T Consensus 15 eQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 677888888888888888888763
No 24
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.98 E-value=1.2e+02 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 255 IMEAEVQALEELSKQLFLEIYELRQAKE 282 (468)
Q Consensus 255 ~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 282 (468)
.|+.|+..|.++-..|+..+..|+...+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777787777777776766665443
No 25
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.69 E-value=3.1e+02 Score=22.32 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhccccchhhhhcceeccccCccchHHHHHHHHHHHHHHHHH
Q 012223 188 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 267 (468)
Q Consensus 188 dI~~~e~~l~~t~~~i~~Kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~l~ 267 (468)
+|..+|..+.+.-.-|..-|.++..++...+. ...+.+ -.-+.+-+.++++|+.=-
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~--DPDevN----------------------k~~~~~R~~~V~~lq~Ki 61 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVEL--DPDDVN----------------------KSTLQSRRAAVSALETKL 61 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHH----------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHH----------------------HHHHHHHHHHHHHHHHHH
Confidence 34445555554444444555677777766553 110011 112234466788887777
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Q 012223 268 KQLFLEIYELRQAKEAAAYSRTWRG 292 (468)
Q Consensus 268 ~~l~~el~~L~~~~~r~~~s~T~~G 292 (468)
.++-..+.+...+.+......-+.|
T Consensus 62 ~elkr~lAd~v~~~k~~~k~~DpTG 86 (96)
T 2ic9_A 62 GELKRELADLIAAQKLASKPVDPTG 86 (96)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhccccccCCCCCCC
Confidence 7777777777765544444444444
No 26
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=22.20 E-value=1e+02 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.1
Q ss_pred cCCHHHHHHHHHHHHHH
Q 012223 183 EIDESEIKALERQLMQS 199 (468)
Q Consensus 183 ~v~~~dI~~~e~~l~~t 199 (468)
.|||.||.+-|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 48999999999877755
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.87 E-value=2e+02 Score=22.78 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhc-cCchhhhHHHHhc
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYE-------LRQAKEAAAY-SRTWRGHMQNLLG 299 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~-------L~~~~~r~~~-s~T~~Gr~~~~~g 299 (468)
+.|.-|+.|++.|+.=...+..|..+ ++.+-++-+. -..|..|+-.++|
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 28
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.84 E-value=3.2e+02 Score=35.48 Aligned_cols=28 Identities=11% Similarity=-0.067 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012223 189 IKALERQLMQSIETCIAKKKKIILCQME 216 (468)
Q Consensus 189 I~~~e~~l~~t~~~i~~Kk~~l~~~~~~ 216 (468)
++.+|+++..+.+.+.+++.+++..+.+
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~ 2043 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKS 2043 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.72 E-value=1.5e+02 Score=25.09 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
.++.|+.|+++++.+...|-..+.+++.+.+.
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888877777765543
No 30
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.13 E-value=2e+02 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQ 269 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~ 269 (468)
++|++|++||+.||.+.+.
T Consensus 54 ~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777787777776443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.83 E-value=4.3e+02 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 186 ESEIKALERQLMQSIETCIAKKKKIILCQ 214 (468)
Q Consensus 186 ~~dI~~~e~~l~~t~~~i~~Kk~~l~~~~ 214 (468)
+.++++++.+..+..+.+...+++++...
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~ 490 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45666666666655555555555544433
No 32
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.66 E-value=1.3e+02 Score=20.95 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 255 IMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 255 ~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
+|+.+-+.||++-..|-.|+..++++...+
T Consensus 21 qlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556677777777777887777765543
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.17 E-value=1.6e+02 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 283 (468)
..++.|+.|++++..+...|-..+.+++.+...
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356788889999988888888888777765544
Done!