Query 012223
Match_columns 468
No_of_seqs 126 out of 171
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 05:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 39.5 63 0.0046 30.1 9.9 33 187-219 6-40 (362)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 21.7 1.3E+02 0.0098 21.5 8.3 33 250-282 51-83 (88)
3 d1nlwa_ a.38.1.1 (A:) Mad prot 17.0 1.6E+02 0.012 20.5 7.4 32 250-281 46-77 (79)
4 d2azeb1 e.63.1.2 (B:201-301) T 16.8 93 0.0068 23.6 5.1 33 252-284 9-41 (101)
5 d2azeb1 e.63.1.2 (B:201-301) T 16.5 1.1E+02 0.0079 23.2 5.5 35 252-286 2-36 (101)
6 d2hgsa4 d.142.1.6 (A:3-201,A:3 15.5 6.3 0.00046 37.7 -2.9 31 145-175 314-369 (370)
7 d1nkpb_ a.38.1.1 (B:) Max prot 14.1 2E+02 0.015 20.2 8.5 32 250-281 46-77 (83)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 11.1 2.8E+02 0.021 20.3 10.7 31 251-281 72-102 (107)
9 d1io1a_ e.32.1.1 (A:) Phase 1 10.6 2.3E+02 0.017 24.0 6.9 25 271-295 57-81 (395)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 10.1 81 0.0059 23.8 3.0 14 158-171 10-23 (158)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=39.52 E-value=63 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhh
Q 012223 187 SEIKALERQLMQSIE--TCIAKKKKIILCQMEMDR 219 (468)
Q Consensus 187 ~dI~~~e~~l~~t~~--~i~~Kk~~l~~~~~~~~~ 219 (468)
.+|+.+.+++..... .+.+||+|++.++.+++.
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsd 40 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQ 40 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 456666666665544 356788899998877664
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.67 E-value=1.3e+02 Score=21.46 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 282 (468)
.+.|+.|+++++.++.-..++-.+...|+.+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888887776666666666666655543
No 3
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.01 E-value=1.6e+02 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 281 (468)
.+.|..|+.++..++.-..+|..+..+|+.+.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888777777777777777766554
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.84 E-value=93 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 284 (468)
+++.|++|-+.|+.+-+.+..++.++....+..
T Consensus 9 El~~L~~~E~~LD~li~~~~~~L~~lted~~n~ 41 (101)
T d2azeb1 9 DLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQ 41 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhc
Confidence 344444444455555555555555555433333
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.49 E-value=1.1e+02 Score=23.15 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012223 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (468)
Q Consensus 252 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 286 (468)
.+..|++|++.|+..++.|=.-+..+++..+....
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35789999999999999976666666665555443
No 6
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.47 E-value=6.3 Score=37.69 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=26.8
Q ss_pred cccchhhheehhhHHH-------------------------HHHhhcccccccccc
Q 012223 145 TIPQLVSRIGVIGVTV-------------------------MAVLAGFGAVNLPYS 175 (468)
Q Consensus 145 ~~~~~lsRvgViGVtl-------------------------mAiLSGfgaVstPy~ 175 (468)
..+++++.+||-|+.+ .++-+|||++.+||-
T Consensus 314 ~~~~~iSElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpyl 369 (370)
T d2hgsa4 314 RVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYP 369 (370)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEE
T ss_pred eeccccccccccEEEEeCCCEEEEeccceEEEecCCCCCCCCCeecceecccCccc
Confidence 4678999999999876 578999999999983
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.09 E-value=2e+02 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (468)
Q Consensus 250 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 281 (468)
.+.|+.|+.+...++.-...+..+...|+.+.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677787777777766666555555555443
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.13 E-value=2.8e+02 Score=20.27 Aligned_cols=31 Identities=6% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012223 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (468)
Q Consensus 251 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 281 (468)
+.+..++.+++.|+.-...+-.++.+++...
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666665555555666555443
No 9
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=10.56 E-value=2.3e+02 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhccCchhhhHH
Q 012223 271 FLEIYELRQAKEAAAYSRTWRGHMQ 295 (468)
Q Consensus 271 ~~el~~L~~~~~r~~~s~T~~Gr~~ 295 (468)
..|+.+|+++..|.....++-|+.+
T Consensus 57 ~~E~~~l~~ei~~ia~~T~fng~~L 81 (395)
T d1io1a_ 57 QAEITQRLNEIDRVSGQTQFNGVKV 81 (395)
T ss_dssp HHHHHHHHHHHHHHHHHCCBTTBCT
T ss_pred HHHHHHHHHHHHHHHHhCeeCCccc
Confidence 3344455556666666677777653
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.13 E-value=81 Score=23.81 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHhhcccccc
Q 012223 158 VTVMAVLAGFGAVN 171 (468)
Q Consensus 158 VtlmAiLSGfgaVs 171 (468)
|.++|+|+++|.-+
T Consensus 10 iaIIgILaaia~P~ 23 (158)
T d2pila_ 10 IAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999998655
Done!