Query 012225
Match_columns 468
No_of_seqs 207 out of 2128
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 00:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 8.1E-94 1.8E-98 750.1 50.8 460 8-468 5-468 (596)
2 PLN02991 oxidoreductase 100.0 1.8E-92 3.8E-97 736.2 50.5 423 24-468 22-445 (543)
3 PLN02354 copper ion binding / 100.0 6.5E-92 1.4E-96 736.2 51.2 449 1-468 1-453 (552)
4 PLN02835 oxidoreductase 100.0 2.3E-91 4.9E-96 731.2 52.6 422 25-468 24-446 (539)
5 PLN02792 oxidoreductase 100.0 5E-91 1.1E-95 726.3 50.0 425 25-468 11-438 (536)
6 PLN02168 copper ion binding / 100.0 2.9E-90 6.3E-95 720.9 51.1 423 28-468 24-450 (545)
7 KOG1263 Multicopper oxidases [ 100.0 5.8E-84 1.3E-88 668.6 48.4 438 20-468 18-468 (563)
8 TIGR03389 laccase laccase, pla 100.0 2.6E-83 5.7E-88 675.8 49.8 425 29-468 2-453 (539)
9 PLN02604 oxidoreductase 100.0 3.3E-82 7.2E-87 668.9 51.2 441 11-468 5-480 (566)
10 PLN02191 L-ascorbate oxidase 100.0 3.4E-82 7.4E-87 667.4 50.0 422 28-468 21-480 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.7E-80 3.6E-85 654.1 49.3 421 30-468 1-457 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 3.7E-80 8E-85 649.7 48.7 420 32-468 10-455 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.1E-69 1.1E-73 564.9 45.8 262 31-317 46-352 (587)
14 PRK10965 multicopper oxidase; 100.0 2.9E-62 6.3E-67 510.2 38.6 246 30-296 45-301 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.7E-59 3.7E-64 485.4 39.0 240 32-293 47-295 (471)
16 TIGR02376 Cu_nitrite_red nitri 100.0 3.1E-50 6.8E-55 395.5 26.2 264 26-318 23-299 (311)
17 COG2132 SufI Putative multicop 100.0 7.3E-47 1.6E-51 392.5 34.7 230 42-295 45-275 (451)
18 PF07732 Cu-oxidase_3: Multico 100.0 7.6E-38 1.6E-42 263.8 11.3 116 36-151 1-117 (117)
19 PF00394 Cu-oxidase: Multicopp 100.0 1.9E-29 4.1E-34 225.6 16.1 154 162-317 1-159 (159)
20 TIGR03095 rusti_cyanin rusticy 99.8 3E-19 6.6E-24 156.2 12.3 104 43-148 35-148 (148)
21 TIGR01480 copper_res_A copper- 99.7 9.3E-18 2E-22 177.4 10.1 112 29-148 471-587 (587)
22 TIGR03096 nitroso_cyanin nitro 99.5 7.7E-14 1.7E-18 118.1 11.8 100 19-133 13-120 (135)
23 PRK10965 multicopper oxidase; 99.2 1.3E-09 2.8E-14 114.9 22.3 250 31-296 180-509 (523)
24 TIGR03389 laccase laccase, pla 99.2 5.7E-09 1.2E-13 111.0 23.1 246 50-298 167-508 (539)
25 PLN02835 oxidoreductase 99.1 5.4E-09 1.2E-13 110.6 21.9 244 49-297 191-499 (539)
26 PRK10883 FtsI repressor; Provi 99.1 6.7E-09 1.4E-13 108.4 19.4 236 32-295 181-453 (471)
27 PF07731 Cu-oxidase_2: Multico 99.1 1.4E-10 3E-15 101.0 5.1 90 60-150 33-137 (138)
28 COG2132 SufI Putative multicop 98.9 3.8E-08 8.2E-13 102.8 16.7 231 46-296 186-435 (451)
29 PRK02710 plastocyanin; Provisi 98.9 2.4E-08 5.2E-13 84.5 11.9 74 60-148 46-119 (119)
30 PLN02354 copper ion binding / 98.9 1.4E-07 3E-12 100.1 20.0 242 50-295 190-504 (552)
31 TIGR03388 ascorbase L-ascorbat 98.9 6.4E-08 1.4E-12 103.0 16.4 233 62-297 204-511 (541)
32 PLN02168 copper ion binding / 98.8 4.4E-07 9.5E-12 96.0 21.2 241 50-295 189-501 (545)
33 PLN02792 oxidoreductase 98.8 1E-06 2.2E-11 93.3 23.8 243 49-296 179-490 (536)
34 PLN02991 oxidoreductase 98.8 1.4E-06 3.1E-11 92.1 23.5 242 49-295 190-496 (543)
35 PLN02604 oxidoreductase 98.8 3.8E-07 8.3E-12 97.5 18.8 232 61-297 224-534 (566)
36 PF13473 Cupredoxin_1: Cupredo 98.7 2.1E-08 4.6E-13 82.9 6.0 103 12-147 2-104 (104)
37 TIGR03390 ascorbOXfungal L-asc 98.7 5.7E-07 1.2E-11 95.6 17.2 244 50-297 172-519 (538)
38 PLN02191 L-ascorbate oxidase 98.5 4.7E-06 1E-10 89.2 18.5 234 61-298 226-535 (574)
39 PF07731 Cu-oxidase_2: Multico 98.4 1.5E-06 3.2E-11 75.5 10.4 78 216-296 33-121 (138)
40 TIGR02656 cyanin_plasto plasto 98.4 8.5E-07 1.8E-11 72.5 8.3 82 60-148 16-99 (99)
41 PLN00044 multi-copper oxidase- 98.4 3.5E-05 7.7E-10 82.2 21.8 230 61-295 217-519 (596)
42 TIGR02376 Cu_nitrite_red nitri 98.3 1.9E-06 4.2E-11 85.2 7.4 99 50-150 189-298 (311)
43 PF00127 Copper-bind: Copper b 98.2 2.2E-06 4.8E-11 70.1 6.1 77 60-148 16-99 (99)
44 PRK02888 nitrous-oxide reducta 98.1 1.2E-05 2.7E-10 84.6 9.7 97 41-150 533-635 (635)
45 KOG1263 Multicopper oxidases [ 98.0 0.00075 1.6E-08 71.6 21.1 264 29-298 158-524 (563)
46 PF06525 SoxE: Sulfocyanin (So 98.0 7.6E-05 1.6E-09 67.3 11.1 102 50-152 74-190 (196)
47 TIGR02657 amicyanin amicyanin. 97.9 4.5E-05 9.7E-10 60.2 8.0 73 60-148 10-83 (83)
48 TIGR03094 sulfo_cyanin sulfocy 97.9 0.00025 5.5E-09 62.6 12.1 98 51-152 74-189 (195)
49 PF00394 Cu-oxidase: Multicopp 97.8 4.1E-05 8.9E-10 68.3 6.6 83 49-132 36-136 (159)
50 TIGR02375 pseudoazurin pseudoa 97.6 0.00031 6.8E-09 58.8 8.4 76 60-151 14-90 (116)
51 PF07732 Cu-oxidase_3: Multico 97.5 0.00011 2.4E-09 61.9 4.0 86 193-297 15-101 (117)
52 COG3794 PetE Plastocyanin [Ene 97.5 0.00062 1.3E-08 57.7 8.3 75 61-149 54-128 (128)
53 TIGR03102 halo_cynanin halocya 97.3 0.0013 2.8E-08 55.0 7.8 73 60-148 41-115 (115)
54 TIGR03095 rusti_cyanin rusticy 96.1 0.026 5.7E-07 49.5 8.0 86 190-294 39-132 (148)
55 TIGR03096 nitroso_cyanin nitro 96.1 0.03 6.5E-07 47.9 7.7 60 216-294 60-119 (135)
56 COG4454 Uncharacterized copper 96.0 0.071 1.5E-06 46.3 9.9 89 57-149 59-158 (158)
57 PRK10378 inactive ferrous ion 95.8 0.093 2E-06 52.9 11.3 78 57-151 40-119 (375)
58 PF00116 COX2: Cytochrome C ox 95.3 0.09 2E-06 44.4 7.8 74 60-147 45-119 (120)
59 PF13473 Cupredoxin_1: Cupredo 95.1 0.094 2E-06 43.0 7.2 61 215-294 33-93 (104)
60 TIGR02866 CoxB cytochrome c ox 95.0 0.35 7.5E-06 44.8 11.7 78 60-151 116-194 (201)
61 TIGR02695 azurin azurin. Azuri 94.9 0.13 2.8E-06 43.2 7.4 85 61-146 16-124 (125)
62 PF06525 SoxE: Sulfocyanin (So 92.7 0.46 1E-05 43.2 7.4 87 193-294 74-170 (196)
63 TIGR03079 CH4_NH3mon_ox_B meth 91.6 1.8 3.9E-05 42.9 10.4 23 100-122 331-354 (399)
64 TIGR02656 cyanin_plasto plasto 91.6 0.56 1.2E-05 38.0 6.0 69 216-294 16-85 (99)
65 COG1622 CyoA Heme/copper-type 91.3 1.7 3.7E-05 41.5 9.8 78 60-151 136-214 (247)
66 PF04744 Monooxygenase_B: Mono 89.9 1.5 3.3E-05 43.6 8.3 70 47-122 249-335 (381)
67 COG4263 NosZ Nitrous oxide red 88.7 0.49 1.1E-05 48.0 4.0 79 61-149 558-637 (637)
68 PF00116 COX2: Cytochrome C ox 86.2 6.6 0.00014 33.1 8.9 60 216-295 45-104 (120)
69 COG4454 Uncharacterized copper 84.8 4.1 8.8E-05 35.6 7.0 75 216-295 62-142 (158)
70 PRK02888 nitrous-oxide reducta 82.6 4.3 9.3E-05 43.7 7.6 63 215-295 553-617 (635)
71 PF12690 BsuPI: Intracellular 81.3 14 0.0003 28.8 8.3 65 227-293 4-82 (82)
72 PF07172 GRP: Glycine rich pro 80.4 0.82 1.8E-05 36.8 1.1 24 1-26 1-24 (95)
73 MTH00140 COX2 cytochrome c oxi 78.8 59 0.0013 30.6 13.6 77 60-150 139-216 (228)
74 PRK02710 plastocyanin; Provisi 77.5 7.9 0.00017 32.5 6.3 60 216-294 46-105 (119)
75 PF12690 BsuPI: Intracellular 76.0 11 0.00023 29.5 6.1 59 60-129 15-80 (82)
76 TIGR02695 azurin azurin. Azuri 75.2 26 0.00056 29.7 8.5 79 216-294 15-111 (125)
77 PF00127 Copper-bind: Copper b 71.4 17 0.00036 29.2 6.6 65 215-294 15-85 (99)
78 MTH00047 COX2 cytochrome c oxi 68.2 98 0.0021 28.4 13.2 76 62-151 117-193 (194)
79 PF05938 Self-incomp_S1: Plant 67.7 24 0.00051 29.0 6.9 70 72-150 2-71 (110)
80 COG2967 ApaG Uncharacterized p 66.7 6.7 0.00015 32.6 3.2 50 72-121 33-88 (126)
81 PF05506 DUF756: Domain of unk 64.3 27 0.00059 27.4 6.3 63 60-130 8-73 (89)
82 PRK13254 cytochrome c-type bio 61.5 13 0.00028 32.6 4.2 67 31-102 34-101 (148)
83 PRK10378 inactive ferrous ion 59.0 54 0.0012 33.4 8.8 63 214-293 41-103 (375)
84 PF07705 CARDB: CARDB; InterP 58.8 85 0.0018 24.4 9.9 68 220-297 14-85 (101)
85 PF10633 NPCBM_assoc: NPCBM-as 57.6 59 0.0013 24.6 7.0 66 221-295 1-75 (78)
86 PRK13159 cytochrome c-type bio 55.0 33 0.00071 30.3 5.6 68 31-102 34-102 (155)
87 PRK05461 apaG CO2+/MG2+ efflux 54.7 15 0.00032 31.3 3.4 21 98-118 66-86 (127)
88 TIGR02866 CoxB cytochrome c ox 51.0 59 0.0013 29.9 7.1 59 217-295 117-175 (201)
89 KOG4063 Major epididymal secre 50.7 1.2E+02 0.0026 26.5 8.2 60 62-121 49-123 (158)
90 PF14344 DUF4397: Domain of un 50.6 1.4E+02 0.0031 24.6 10.5 21 228-248 3-24 (122)
91 PF01835 A2M_N: MG2 domain; I 50.1 53 0.0011 26.1 5.9 69 221-296 11-86 (99)
92 PF04151 PPC: Bacterial pre-pe 48.5 91 0.002 23.0 6.6 66 216-294 4-69 (70)
93 PF14481 Fimbrial_PilY2: Type 47.9 1.2 2.7E-05 35.8 -3.8 69 1-74 1-79 (118)
94 PRK15188 fimbrial chaperone pr 45.8 1.5E+02 0.0032 28.0 9.0 18 60-77 79-96 (228)
95 COG4633 Plastocyanin domain co 45.6 1.1E+02 0.0025 28.5 7.7 90 42-152 78-172 (272)
96 TIGR01432 QOXA cytochrome aa3 44.7 2.6E+02 0.0057 26.0 12.4 75 61-150 130-206 (217)
97 PF07691 PA14: PA14 domain; I 44.1 1.4E+02 0.0031 25.0 8.2 64 218-286 53-123 (145)
98 PRK09918 putative fimbrial cha 43.9 1.4E+02 0.003 28.2 8.5 17 60-76 75-91 (230)
99 TIGR03094 sulfo_cyanin sulfocy 42.6 2.2E+02 0.0049 25.8 8.9 86 194-294 74-169 (195)
100 PF11142 DUF2917: Protein of u 41.9 69 0.0015 23.5 4.8 47 219-277 2-48 (63)
101 cd00918 Der-p2_like Several gr 40.6 99 0.0021 26.0 6.3 61 61-121 20-88 (120)
102 COG1622 CyoA Heme/copper-type 40.4 1.1E+02 0.0024 29.3 7.2 60 217-296 137-196 (247)
103 MTH00129 COX2 cytochrome c oxi 39.0 3.4E+02 0.0073 25.6 12.7 75 61-149 140-215 (230)
104 PF04379 DUF525: Protein of un 37.6 71 0.0015 25.4 4.6 50 226-278 15-68 (90)
105 smart00758 PA14 domain in bact 37.6 2.4E+02 0.0053 23.5 8.6 64 218-286 51-115 (136)
106 PF04744 Monooxygenase_B: Mono 37.3 27 0.00059 35.0 2.7 54 96-149 70-128 (381)
107 PRK05461 apaG CO2+/MG2+ efflux 37.1 91 0.002 26.5 5.5 50 226-278 32-85 (127)
108 PF10989 DUF2808: Protein of u 35.3 48 0.0011 28.8 3.7 29 104-132 95-126 (146)
109 TIGR01433 CyoA cytochrome o ub 35.1 3.9E+02 0.0084 25.1 12.8 75 61-150 139-215 (226)
110 COG3521 Predicted component of 34.6 70 0.0015 28.3 4.5 44 1-45 1-45 (159)
111 MTH00051 COX2 cytochrome c oxi 34.5 4E+02 0.0087 25.1 12.1 58 61-132 144-201 (234)
112 TIGR02375 pseudoazurin pseudoa 34.3 90 0.0019 26.1 5.0 19 216-234 14-32 (116)
113 PF11614 FixG_C: IG-like fold 33.3 1.6E+02 0.0034 24.3 6.4 48 226-282 34-83 (118)
114 COG1188 Ribosome-associated he 33.2 33 0.00071 27.8 2.0 29 52-80 36-64 (100)
115 TIGR01000 bacteriocin_acc bact 32.8 1.1E+02 0.0023 32.2 6.5 16 266-281 369-384 (457)
116 TIGR03102 halo_cynanin halocya 32.0 2.2E+02 0.0048 23.7 7.0 61 216-294 41-101 (115)
117 PRK13202 ureB urease subunit b 31.5 1.7E+02 0.0036 23.9 5.8 59 62-120 12-84 (104)
118 cd00916 Npc2_like Niemann-Pick 31.1 1.9E+02 0.0041 24.3 6.5 59 63-121 24-92 (123)
119 PF06255 DUF1020: Protein of u 30.5 1E+02 0.0022 29.8 5.2 38 84-121 100-137 (327)
120 MTH00185 COX2 cytochrome c oxi 30.4 4.7E+02 0.01 24.7 12.3 59 60-132 139-197 (230)
121 COG3794 PetE Plastocyanin [Ene 29.9 2.3E+02 0.0049 24.2 6.7 62 216-295 53-114 (128)
122 MTH00008 COX2 cytochrome c oxi 29.7 2.5E+02 0.0055 26.4 7.8 75 61-149 140-215 (228)
123 COG4263 NosZ Nitrous oxide red 29.4 75 0.0016 32.9 4.3 61 62-132 549-609 (637)
124 PF10794 DUF2606: Protein of u 29.2 96 0.0021 25.9 4.1 40 25-64 35-76 (131)
125 PF14451 Ub-Mut7C: Mut7-C ubiq 29.0 49 0.0011 25.7 2.4 27 48-74 48-74 (81)
126 TIGR02657 amicyanin amicyanin. 28.6 2E+02 0.0044 22.0 5.9 61 216-293 10-70 (83)
127 PF03896 TRAP_alpha: Transloco 28.2 5.8E+02 0.013 25.0 10.2 24 62-85 92-117 (285)
128 MTH00023 COX2 cytochrome c oxi 28.2 5.2E+02 0.011 24.5 11.9 74 61-149 151-226 (240)
129 PTZ00047 cytochrome c oxidase 27.0 3.2E+02 0.0069 24.3 7.3 74 62-150 74-149 (162)
130 KOG4387 Ornithine decarboxylas 26.8 25 0.00055 31.4 0.5 28 63-90 71-98 (191)
131 COG3354 FlaG Putative archaeal 25.9 2.4E+02 0.0052 24.5 6.1 54 225-282 70-131 (154)
132 PF03100 CcmE: CcmE; InterPro 25.1 18 0.00039 30.9 -0.7 67 32-102 34-101 (131)
133 cd05468 pVHL von Hippel-Landau 24.9 81 0.0018 27.3 3.3 42 66-115 4-45 (141)
134 MTH00047 COX2 cytochrome c oxi 23.5 3.2E+02 0.0069 25.1 7.0 59 217-295 116-174 (194)
135 PF14478 DUF4430: Domain of un 23.3 70 0.0015 23.7 2.3 26 48-73 39-67 (68)
136 PRK09918 putative fimbrial cha 22.2 3.1E+02 0.0068 25.7 7.0 20 216-235 75-94 (230)
137 KOG4680 Uncharacterized conser 22.0 5.2E+02 0.011 22.3 8.7 68 31-113 34-104 (153)
138 PF05753 TRAP_beta: Translocon 21.8 6E+02 0.013 23.0 8.9 24 106-129 81-105 (181)
139 TIGR02988 YaaA_near_RecF S4 do 21.5 55 0.0012 23.4 1.3 22 52-73 36-58 (59)
140 KOG1554 COP9 signalosome, subu 21.3 58 0.0012 31.5 1.7 26 126-151 134-174 (347)
141 cd08058 MPN_euk_mb Mpr1p, Pad1 20.2 44 0.00095 27.8 0.7 7 127-133 69-75 (119)
142 TIGR03352 VI_chp_3 type VI sec 20.0 1.9E+02 0.0042 25.1 4.7 17 105-121 87-103 (146)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=8.1e-94 Score=750.14 Aligned_cols=460 Identities=64% Similarity=1.105 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHHhhhhccccCccEEEEEEEEEEEECCCC--ceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCcee
Q 012225 8 SLFLVLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLG--VPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLM 85 (468)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG--~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~si 85 (468)
+|+|+++..+|+.-..+.|++++|+|+|++++..+++|| ..+.+++||||+|||+|++++||+|+|+|+|+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttI 84 (596)
T PLN00044 5 LFLLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLL 84 (596)
T ss_pred HHHHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccE
Confidence 334444455555555566788899999999999999999 556899999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCC-CCcE
Q 012225 86 TWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQP-EGDI 164 (468)
Q Consensus 86 H~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~-~~e~ 164 (468)
||||++|+.++|+|||++|||||+||++|+|+|++++++||||||||++.|+++||+|+|||++++..+.||..+ ++|.
T Consensus 85 HWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~ 164 (596)
T PLN00044 85 TWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDI 164 (596)
T ss_pred EECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccce
Confidence 999999999999999988999999999999999997789999999999999999999999999987656666543 4799
Q ss_pred EEEEeeeeecchHHHHHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEE
Q 012225 165 IFLIGDWYTRNHTALRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRI 244 (468)
Q Consensus 165 ~l~l~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 244 (468)
+|+|+||++++..++...+..|.....++.++|||++.+.++|+.....+..++++|++||+|||||||++....+.|+|
T Consensus 165 ~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsI 244 (596)
T PLN00044 165 TLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRI 244 (596)
T ss_pred EEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEE
Confidence 99999999988776655566665556789999999987655544222233456899999999999999999999999999
Q ss_pred eCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCC
Q 012225 245 QNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGP 324 (468)
Q Consensus 245 ~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~ 324 (468)
+||+|+|||+||.+++|..++.|.|++||||||+|+++++++++|||++..............+.|||+|+++......+
T Consensus 245 dgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~ 324 (596)
T PLN00044 245 QGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGP 324 (596)
T ss_pred CCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCC
Confidence 99999999999999999999999999999999999999876448999986542211112346788999998764322222
Q ss_pred CCCCCCC-CcccccccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCch
Q 012225 325 LPEAPSD-IYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPI 403 (468)
Q Consensus 325 ~p~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~ 403 (468)
.|. .|. ..+..++.+....++.+......++.|..+.........+.+.+.........|+.+|+|||++|..|++|+
T Consensus 325 ~P~-~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~ 403 (596)
T PLN00044 325 LPD-APDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPL 403 (596)
T ss_pred CCC-CCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcc
Confidence 333 232 233333332333444333333334444433222222222222222100001235789999999999999999
Q ss_pred hhhcccCCCcccccCCCCCCCCCCCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 404 RLADKYNVKGAYKLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
|++.++..+++|..++++.|........+.++.+++|+||||||+|.....||||||||+|||||
T Consensus 404 L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg 468 (596)
T PLN00044 404 MLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVG 468 (596)
T ss_pred hhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEe
Confidence 98888777888887787766654445578889999999999999998778999999999999997
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.8e-92 Score=736.16 Aligned_cols=423 Identities=51% Similarity=0.902 Sum_probs=346.2
Q ss_pred ccccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC
Q 012225 24 CFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG 103 (468)
Q Consensus 24 ~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~ 103 (468)
..|++++|+|+|+|++..+++||++|.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+++
T Consensus 22 ~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~ 101 (543)
T PLN02991 22 VAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG 101 (543)
T ss_pred hhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHh
Q 012225 104 TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTAL 183 (468)
Q Consensus 104 tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 183 (468)
|||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.|++.+|+|++++|+||+++....+...+
T Consensus 102 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~ 181 (543)
T PLN02991 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL 181 (543)
T ss_pred CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh
Confidence 99999999999999999768999999999999999999999999998665666667789999999999999876665555
Q ss_pred hcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccccee
Q 012225 184 DSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQN 263 (468)
Q Consensus 184 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~ 263 (468)
..+...+.+|.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..
T Consensus 182 ~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~ 248 (543)
T PLN02991 182 DNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTP 248 (543)
T ss_pred hcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcccccee
Confidence 5565667899999999975 267999999999999999999999999999999999999999999999
Q ss_pred eceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccccccCCcc
Q 012225 264 YTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPR 343 (468)
Q Consensus 264 ~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~ 343 (468)
++++.|++||||||+|+++++++ +|||++....... ....+|||+|+++......+.|. .|. +..+..+...
T Consensus 249 ~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~~----~~~~~AIl~Y~g~~~~~~~~~p~-~p~--~~~~~~~~~~ 320 (543)
T PLN02991 249 FSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTSK----ILITTGVLHYSNSAGPVSGPIPD-GPI--QLSWSFDQAR 320 (543)
T ss_pred eeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCCC----CcceEEEEEeCCCCCCCCCCCCC-CCc--cccccccchh
Confidence 99999999999999999999888 9999997654432 25778999999864322222333 232 2222222222
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccCCCcccccC-CCCC
Q 012225 344 SIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FPNK 422 (468)
Q Consensus 344 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~ 422 (468)
..+.++.+....+.|..++.......++++.+..... ..+++.+|+|||++|..|++|+|++.++.++++|..+ +++.
T Consensus 321 ~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~ 399 (543)
T PLN02991 321 AIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQ 399 (543)
T ss_pred hhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhcccCcccccccccc
Confidence 2334444444444454433333334555555543211 1246789999999999999999988777777888766 6665
Q ss_pred CCCCCCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 423 PLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 423 p~~~~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
|.........+++.+++|++|||||+|.+...||||||||+|||||
T Consensus 400 ~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg 445 (543)
T PLN02991 400 PTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVG 445 (543)
T ss_pred CCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEE
Confidence 6544444567788999999999999999888999999999999996
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6.5e-92 Score=736.24 Aligned_cols=449 Identities=52% Similarity=0.888 Sum_probs=348.6
Q ss_pred CchhhHhHHHHHHHHHHHHhhhhccccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC
Q 012225 1 MASLRFLSLFLVLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD 80 (468)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~ 80 (468)
|+--|.+..+|.++.+.+++ ..|++++++|+|+|++..+++||+.|.+++||||+|||+||+++||+|+|+|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~ 77 (552)
T PLN02354 1 MMGGRLLAVLLCLAAAVALV---VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD 77 (552)
T ss_pred CchHHHHHHHHHHHHHHHHh---hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC
Confidence 44444443333333333333 333457899999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCC
Q 012225 81 ESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQP 160 (468)
Q Consensus 81 ~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~ 160 (468)
++++|||||++|++++|+||+++|||||+||++|+|+|++.+++||||||||.+.|+.+||+|+|||++++..+.+|+.+
T Consensus 78 ~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~ 157 (552)
T PLN02354 78 EPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADP 157 (552)
T ss_pred CCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCc
Confidence 99999999999999999999999999999999999999986689999999999999999999999999987656677677
Q ss_pred CCcEEEEEeeeeecchHHHHHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCee
Q 012225 161 EGDIIFLIGDWYTRNHTALRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSL 240 (468)
Q Consensus 161 ~~e~~l~l~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~ 240 (468)
++|++++|+||+++....+...+..+...+.++.+||||+....| ....+.++|++||+|||||||+|....+
T Consensus 158 d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~-------~~~~~~~~v~~Gk~yRlRiINa~~~~~~ 230 (552)
T PLN02354 158 EDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGD-------GKDEPLFTMKPGKTYRYRICNVGLKSSL 230 (552)
T ss_pred CceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCC-------CCCceEEEECCCCEEEEEEEecCCCceE
Confidence 899999999999998777666666665556789999999975432 1234789999999999999999999999
Q ss_pred eEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCC
Q 012225 241 NFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGA 320 (468)
Q Consensus 241 ~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~ 320 (468)
.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++| +|||++....... ....+|||+|+++...
T Consensus 231 ~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~ 305 (552)
T PLN02354 231 NFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFLKK----VLTTTGIIRYEGGKGP 305 (552)
T ss_pred EEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCC-cEEEEEeccccCC----CccEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999998888 9999987543322 3678899999876432
Q ss_pred CCCCCCCCCCCCcccccccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCC
Q 012225 321 ASGPLPEAPSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPE 400 (468)
Q Consensus 321 ~~~~~p~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~ 400 (468)
.+.+.|. .|. +..+....+.+.+.++.+....+.|...........++++.+..... ..++..+|+|||++|..|+
T Consensus 306 ~~~~~p~-~~~--~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~ 381 (552)
T PLN02354 306 ASPELPE-APV--GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPE 381 (552)
T ss_pred CCCCCCC-CCc--ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCC
Confidence 2222222 121 11122222233333344333333343332222234566666654221 1345789999999999999
Q ss_pred CchhhhcccCCC-cccccC-CCCCCC--CCCCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 401 TPIRLADKYNVK-GAYKLD-FPNKPL--TRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 401 ~P~l~~~~~~~~-~~~~~~-~~~~p~--~~~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
+|+|++.++++. +.++.+ +++.|. ......+.+++.+++|++|||||+|.+...||||||||+|||||
T Consensus 382 ~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg 453 (552)
T PLN02354 382 TPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVA 453 (552)
T ss_pred CChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEe
Confidence 999988765443 555533 333332 12234566889999999999999999888999999999999997
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.3e-91 Score=731.21 Aligned_cols=422 Identities=52% Similarity=0.905 Sum_probs=341.5
Q ss_pred cccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCC
Q 012225 25 FAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGT 104 (468)
Q Consensus 25 ~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 104 (468)
.+.+++|+|+|++++..+++||+++.+|+||||+|||+||+++||+|+|+|+|+|+++++|||||++|+.++||||+++|
T Consensus 24 ~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~t 103 (539)
T PLN02835 24 NGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGT 103 (539)
T ss_pred hccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhh
Q 012225 105 NCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALD 184 (468)
Q Consensus 105 q~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 184 (468)
||||+||++|+|+|++++++||||||||++.|+.+||+|+|||++++..+.+++.+|+|++++|+||+++....+...+.
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 183 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLD 183 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhh
Confidence 99999999999999987789999999999999999999999998765545566678999999999999998776665666
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceee
Q 012225 185 SGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNY 264 (468)
Q Consensus 185 ~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~ 264 (468)
.+...+.++.+||||+.. +.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+
T Consensus 184 ~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~ 249 (539)
T PLN02835 184 SGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIY 249 (539)
T ss_pred cCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCcee
Confidence 666667889999999986 679999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccccccCCccc
Q 012225 265 TSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRS 344 (468)
Q Consensus 265 d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~ 344 (468)
+.+.|++||||||+|++++++| +|||++....... .....|+|+|+++..+.+.++|. .|. .+..++......
T Consensus 250 ~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~~~p~-~p~-~~~~~~~~~~~~ 322 (539)
T PLN02835 250 DSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTRQ----ILTATAVLHYSNSRTPASGPLPA-LPS-GELHWSMRQART 322 (539)
T ss_pred eEEEECcCceEEEEEEcCCCCC-cEEEEEEccccCC----CcceEEEEEECCCCCCCCCCCCC-CCc-cccccccchhhc
Confidence 9999999999999999998888 9999986533221 25788999998764322223333 221 111112222222
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccCCCcccccC-CCCCC
Q 012225 345 IRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FPNKP 423 (468)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~p 423 (468)
....+.+....+.|..++.......++++.+..... ..+|+.+|+|||++|..|++|+|++.++..++.++.+ +...+
T Consensus 323 ~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~ 401 (539)
T PLN02835 323 YRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLP 401 (539)
T ss_pred cccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCC
Confidence 222344434444443333222234466665543221 2346789999999999999999988776666777654 23334
Q ss_pred CCCCCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 424 LTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 424 ~~~~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
.+...+.+++++.+++|++|||+|+|.+...||||||||+|||||
T Consensus 402 ~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg 446 (539)
T PLN02835 402 SGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVG 446 (539)
T ss_pred CCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEe
Confidence 433456678999999999999999999989999999999999996
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=5e-91 Score=726.27 Aligned_cols=425 Identities=51% Similarity=0.891 Sum_probs=347.0
Q ss_pred cccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCC
Q 012225 25 FAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGT 104 (468)
Q Consensus 25 ~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 104 (468)
...+++++|+|++++..+++||+.|.+++||||+|||+|++++||+|+|+|+|+++++++|||||++|+.++|+||+++|
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhh
Q 012225 105 NCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALD 184 (468)
Q Consensus 105 q~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 184 (468)
||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.+++.+|+|++++|+||+++....+...++
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999997789999999999999999999999999866555666677899999999999988766655555
Q ss_pred cCCCCC-CCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccccee
Q 012225 185 SGKDLD-MPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQN 263 (468)
Q Consensus 185 ~g~~~~-~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~ 263 (468)
.+...+ .+|.+||||++... .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~-----------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSY-----------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCC-----------cceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 554434 78999999998643 278999999999999999999999999999999999999999999999
Q ss_pred eceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccccccCCcc
Q 012225 264 YTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPR 343 (468)
Q Consensus 264 ~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~ 343 (468)
++.|.|++||||||+|++++++| +|||++.+...+. +....|||+|+++..... ..|. .|...+..+......
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~-~p~~~~~~~~~~~~~ 312 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHAR-QPDPDDLEWSIKQAQ 312 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCC-CCCcCCccccccchh
Confidence 99999999999999999998888 9999998764332 257789999987643211 1222 232234444433333
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccCCCcccccC-CCCC
Q 012225 344 SIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FPNK 422 (468)
Q Consensus 344 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~ 422 (468)
.++..+.+..+.+.|..++.+....+++++.+..... ...++.+|+|||++|..|++|+|++.++.+.++++.+ +++.
T Consensus 313 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 313 SIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred hhhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 3444444433445555444443344556665544221 2235789999999999999999998777667777654 6665
Q ss_pred CCCC-CCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 423 PLTR-PPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 423 p~~~-~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
|... +....++++.+++|++|||||+|.+...||||||||+|||||
T Consensus 392 p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg 438 (536)
T PLN02792 392 PRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVG 438 (536)
T ss_pred CcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEe
Confidence 5432 234467889999999999999998888999999999999997
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.9e-90 Score=720.85 Aligned_cols=423 Identities=48% Similarity=0.884 Sum_probs=335.1
Q ss_pred CccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCC
Q 012225 28 DDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCP 107 (468)
Q Consensus 28 ~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 107 (468)
+++|+|+|+|++..+++||+.+.+++||||+|||+||+++||+|+|+|+|+|+++++|||||++|..++||||+++||||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcp 103 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCP 103 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhhcCC
Q 012225 108 IPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDSGK 187 (468)
Q Consensus 108 I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~g~ 187 (468)
|+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.|++.+++|++|+|+||++.+...+...+..+.
T Consensus 104 I~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~ 183 (545)
T PLN02168 104 ILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGH 183 (545)
T ss_pred CCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCC
Confidence 99999999999997689999999999999999999999999987655666677999999999999987655544444444
Q ss_pred CCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceE
Q 012225 188 DLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSF 267 (468)
Q Consensus 188 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i 267 (468)
..+.++.+||||++.. .+++++++||+|||||||++....+.|+|+||+|+|||+||.+++|..++.|
T Consensus 184 ~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l 251 (545)
T PLN02168 184 SLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSL 251 (545)
T ss_pred CCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEE
Confidence 4567899999999842 2689999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEEecCCC-C--cceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccccccCCccc
Q 012225 268 EIHVGQSYSFLVTMDQNA-S--SDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRS 344 (468)
Q Consensus 268 ~l~pGqR~dv~v~~~~~~-g--~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~ 344 (468)
.|++||||||+|++++++ | ++|||++....... ...+.|||+|+++......++|. .|...+.....+....
T Consensus 252 ~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~-~p~~~~~~~~~~~~~~ 326 (545)
T PLN02168 252 DIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPL-APALHDYFSSVEQALS 326 (545)
T ss_pred EEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCC-CCcccccccccchhhh
Confidence 999999999999998654 3 38999998754332 26778999998764332223333 3332222222111111
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccCCCcccccC-CCCCC
Q 012225 345 IRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FPNKP 423 (468)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~p 423 (468)
+...+.+....+.|..++.++....++++.+.... ...+|+.+|+|||++|..|++|+|++.++..++.+..+ ++..|
T Consensus 327 ~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p 405 (545)
T PLN02168 327 IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV-MLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYP 405 (545)
T ss_pred hhhcCCCCCCCCCCcccccccccccceeEEecccc-cccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCC
Confidence 22233333333444433333334455666554321 12346789999999999999999987765544444433 44444
Q ss_pred CCCCCCcceEEEEecCCcEEEEEEecCCCCCCceeccCCCceeeC
Q 012225 424 LTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 424 ~~~~~~~~~~~~~~~~g~~Veivi~N~~~~~HP~HLHGh~F~Vlg 468 (468)
.+......++++.+++|++|||||+|.+...||||||||+|||||
T Consensus 406 ~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg 450 (545)
T PLN02168 406 SNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVG 450 (545)
T ss_pred CcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEE
Confidence 332223346888999999999999999888999999999999996
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-84 Score=668.61 Aligned_cols=438 Identities=45% Similarity=0.732 Sum_probs=377.1
Q ss_pred hhhhccccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCC
Q 012225 20 FSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQD 99 (468)
Q Consensus 20 ~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~D 99 (468)
++....|+++.+.++|+++...+.++|.++.++++||++|||+|+|++||+|.|+|.|+++++++|||||++|+.++|+|
T Consensus 18 ~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~D 97 (563)
T KOG1263|consen 18 LVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQD 97 (563)
T ss_pred HHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCcccc
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeec-chHH
Q 012225 100 GVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTR-NHTA 178 (468)
Q Consensus 100 Gv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~ 178 (468)
|+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||+++...+.|++.+|+|++|+|+||+++ +...
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 933499999999999999999889999999999999999999999999999887788888999999999999996 7777
Q ss_pred HHHHhhcCCCCCC-CceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCc
Q 012225 179 LRTALDSGKDLDM-PDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGH 257 (468)
Q Consensus 179 ~~~~~~~g~~~~~-~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~ 257 (468)
+...++.+...+. +|..+|||+..+..+| .++++|++||+|||||+|+|....+.|+|+||+|+||++||.
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~ 249 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGA 249 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecce
Confidence 7777776665555 8999999999765444 489999999999999999999999999999999999999999
Q ss_pred cccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCC---CCCCCCcc
Q 012225 258 YTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLP---EAPSDIYN 334 (468)
Q Consensus 258 ~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p---~~~p~~~~ 334 (468)
+++|..+++|.|+||||+||+|++++.++ +|||.+..++.....+.+....++|+|.++....+...+ . .|...+
T Consensus 250 y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~-~~~~~~ 327 (563)
T KOG1263|consen 250 YTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPF-LPPGND 327 (563)
T ss_pred EEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCccccc-CCcccC
Confidence 99999999999999999999999999999 999999987764422225888999999985433332222 2 232245
Q ss_pred cccccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccCCC-c
Q 012225 335 QWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVK-G 413 (468)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~-~ 413 (468)
..++....+.++..++...++++|++++..+....++.+.+..... ..+++.+++||+.+|..|++|.+++.++... +
T Consensus 328 ~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~ 406 (563)
T KOG1263|consen 328 TAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAYFKNIPG 406 (563)
T ss_pred chhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhhhccCCc
Confidence 5667777778888888888899999888877778888888876543 4577999999999999999999998776544 4
Q ss_pred ccccCCCCCCCC---C-CCCcceEEEEecCCcEEEEEEecCC---CCCCceeccCCCceeeC
Q 012225 414 AYKLDFPNKPLT---R-PPRTDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 414 ~~~~~~~~~p~~---~-~~~~~~~~~~~~~g~~Veivi~N~~---~~~HP~HLHGh~F~Vlg 468 (468)
.++.++++.|.. . +.+.+++++.+++++.||||++|.+ .+.||||||||+|||||
T Consensus 407 ~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg 468 (563)
T KOG1263|consen 407 YFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVG 468 (563)
T ss_pred cccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEE
Confidence 555568888732 1 2378999999999999999999987 44689999999999997
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.6e-83 Score=675.75 Aligned_cols=425 Identities=27% Similarity=0.521 Sum_probs=317.6
Q ss_pred ccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC-CCCC
Q 012225 29 DTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCP 107 (468)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~ 107 (468)
++|+|+|+|++..+++||++|.+|+|||++|||+|++++||+|+|+|+|+++++++|||||++|.+++|+||+++ ||||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHH-HHhhcC
Q 012225 108 IPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALR-TALDSG 186 (468)
Q Consensus 108 I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~g 186 (468)
|+||++|+|+|++++++||||||||...|+ +||+|+|||+++...+.+++.+|+|++|+|+||+++....+. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999966899999999998765 599999999997765566667799999999999998766543 333444
Q ss_pred CCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeece
Q 012225 187 KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTS 266 (468)
Q Consensus 187 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~ 266 (468)
....++|.++|||+......|+ ....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.+++
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~ 236 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCS----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKT 236 (539)
T ss_pred CCCCccceEEECCCcCCCCCCC----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCe
Confidence 4445779999999974322221 123478999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccccccCCccccc
Q 012225 267 FEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRSIR 346 (468)
Q Consensus 267 i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~ 346 (468)
+.|++||||||+|++++++| +|||++.....+.....+....|||+|+++.....+..+. .|..++...+......+.
T Consensus 237 l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~l~ 314 (539)
T TIGR03389 237 IVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPT-LPAYNDTAAATNFSNKLR 314 (539)
T ss_pred EEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCC-CCCCCchhhhhHHHhhcc
Confidence 99999999999999998888 9999997653322111236688999998754321111111 111111111100000000
Q ss_pred cCCCCCCCCCCCCCCCCCCccccceEEEEecCCCc---------c-cCCeEEEEEcCeeccCCCCchhhhcccCCCcccc
Q 012225 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPV---------T-IDGKVRSTLNGISFVKPETPIRLADKYNVKGAYK 416 (468)
Q Consensus 347 ~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~---------~-~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~ 416 (468)
....+..+...| ..+++++.+...... . ....++|+|||++|..|++|+|.+.+.++.+.+.
T Consensus 315 ~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~ 386 (539)
T TIGR03389 315 SLNSAQYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFT 386 (539)
T ss_pred cccccCCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccc
Confidence 000000001111 123444443321100 0 1235789999999999999998766554444333
Q ss_pred cCCCCCCC------------CCCCCcceEEEEecCCcEEEEEEecCC---CCCCceeccCCCceeeC
Q 012225 417 LDFPNKPL------------TRPPRTDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 417 ~~~~~~p~------------~~~~~~~~~~~~~~~g~~Veivi~N~~---~~~HP~HLHGh~F~Vlg 468 (468)
.++++.+. +-..+.+.+++.++.|++|||+|+|.+ ...||||||||+|||||
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg 453 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVG 453 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEE
Confidence 22222111 001233678899999999999999985 44899999999999996
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.3e-82 Score=668.88 Aligned_cols=441 Identities=28% Similarity=0.496 Sum_probs=330.5
Q ss_pred HHHHHHHHHhhhhccccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCC-CCCceeecCc
Q 012225 11 LVLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDL-DESLLMTWPG 89 (468)
Q Consensus 11 ~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG 89 (468)
|++|+..++-+....+++++|+|+|+|++..+++||++|.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG 84 (566)
T PLN02604 5 LALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHG 84 (566)
T ss_pred hhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCC
Confidence 334444444455566677899999999999999999999999999999999999999999999999998 5899999999
Q ss_pred ccCCCCCCCCCCCC-CCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEE
Q 012225 90 IQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLI 168 (468)
Q Consensus 90 ~~~~~~~~~DGv~~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l 168 (468)
+++.+++|+||+++ +||+|+||++++|+|++ +++||||||||.+.|+.+||+|+|||++++..+.++ .+|+|.+|+|
T Consensus 85 ~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l 162 (566)
T PLN02604 85 IRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIIL 162 (566)
T ss_pred CCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEe
Confidence 99999999999998 99999999999999999 589999999999999999999999999976544555 4688999999
Q ss_pred eeeeecchHHHHHHhhcC--CCCCCCceEEEcCcCCCCCCCcc-----------CCCCCcceEEEEcCCCEEEEEEEEcC
Q 012225 169 GDWYTRNHTALRTALDSG--KDLDMPDGVLINGKGPYRYNTTL-----------VPDGIEYETINVDPGKTYRVRVHNVG 235 (468)
Q Consensus 169 ~d~~~~~~~~~~~~~~~g--~~~~~~~~~liNG~~~~~~~~~~-----------~~~~~~~~~~~v~~G~~~rlRliN~~ 235 (468)
+||+|+...++...+... ....+++..+|||++.+.|.... ....+..+.+++++|++|||||||+|
T Consensus 163 ~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~ 242 (566)
T PLN02604 163 TDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLT 242 (566)
T ss_pred eccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEecc
Confidence 999998765543333211 12246899999999998875321 01223556899999999999999999
Q ss_pred CCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEc
Q 012225 236 TSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYS 315 (468)
Q Consensus 236 ~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~ 315 (468)
..+.+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++|++|||++....... ....++|||+|+
T Consensus 243 ~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~ 319 (566)
T PLN02604 243 ALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYY 319 (566)
T ss_pred ccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEEC
Confidence 99999999999999999999999999999999999999999999999876558999986543321 236778999998
Q ss_pred CCCCCCCCC--CCCCCCCCcccccccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcC
Q 012225 316 NSKGAASGP--LPEAPSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNG 393 (468)
Q Consensus 316 ~~~~~~~~~--~p~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~ 393 (468)
+.......+ .+. .+.+.+....++....+.. +... .. .+ ....++++.+..... ..++..+|+|||
T Consensus 320 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~-------~~~~d~~~~~~~~~~-~~~~~~~w~in~ 387 (566)
T PLN02604 320 PNHPRRSPPTVPPS-GPLWNDVEPRLNQSLAIKA-RHGY-IH-PP-------PLTSDRVIVLLNTQN-EVNGYRRWSVNN 387 (566)
T ss_pred CCCCCCCCCCCCCC-CCcccccchhhcchhcccc-cccC-cC-CC-------CCCCCeEEEEecccc-ccCCeEEEEECc
Confidence 643211111 011 1111111101110000000 0000 00 01 124566666543221 224568999999
Q ss_pred eeccCCCCchhhhcccCCCcccccC-CCCC-----------CCCCCCCcceEEEEecCCcEEEEEEecCC------CCCC
Q 012225 394 ISFVKPETPIRLADKYNVKGAYKLD-FPNK-----------PLTRPPRTDRSLINATYKGFIEIILQNND------TKMQ 455 (468)
Q Consensus 394 ~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~-----------p~~~~~~~~~~~~~~~~g~~Veivi~N~~------~~~H 455 (468)
++|..|++|+|++.+...++.++.+ .++. ....+.+.+.+++.++.|++|||+|+|.+ ...|
T Consensus 388 ~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~H 467 (566)
T PLN02604 388 VSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETH 467 (566)
T ss_pred ccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCC
Confidence 9999899999887655445555432 1110 01123445678899999999999999985 4579
Q ss_pred ceeccCCCceeeC
Q 012225 456 SFHMDGYSFFVVG 468 (468)
Q Consensus 456 P~HLHGh~F~Vlg 468 (468)
|||||||+|||||
T Consensus 468 P~HLHGH~F~Vlg 480 (566)
T PLN02604 468 PWHLHGHDFWVLG 480 (566)
T ss_pred CEEecCCceEEEE
Confidence 9999999999996
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.4e-82 Score=667.43 Aligned_cols=422 Identities=28% Similarity=0.526 Sum_probs=317.4
Q ss_pred CccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-CC
Q 012225 28 DDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TN 105 (468)
Q Consensus 28 ~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq 105 (468)
+++|+|+|++++..+++||++|.+++||||+|||+||+++||+|+|+|+|+++ ++++|||||++|++++|+||+++ ||
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 56899999999999999999999999999999999999999999999999997 78999999999999999999998 99
Q ss_pred CCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhhc
Q 012225 106 CPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDS 185 (468)
Q Consensus 106 ~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~ 185 (468)
|||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++.....++ .+|+|++|+|+||+|+........+..
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999999 589999999999999999999999999755422233 469999999999999864432222221
Q ss_pred --CCCCCCCceEEEcCcCCCCCCCccC--------------CCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCee
Q 012225 186 --GKDLDMPDGVLINGKGPYRYNTTLV--------------PDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNL 249 (468)
Q Consensus 186 --g~~~~~~~~~liNG~~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 249 (468)
.....+++++||||++.+.|..... ...+.+.+++|++||+|||||||+|+.+.+.|+|+||+|
T Consensus 179 ~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 258 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKL 258 (574)
T ss_pred CCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeE
Confidence 1223568999999999888753210 112344579999999999999999999999999999999
Q ss_pred EEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCC--CCCCCC
Q 012225 250 LLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAA--SGPLPE 327 (468)
Q Consensus 250 ~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~--~~~~p~ 327 (468)
+|||+||.+++|+.+++|.|++||||||+|+++++++++||||+....... ......|||+|.++.... +.+.+.
T Consensus 259 tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~ 335 (574)
T PLN02191 259 VVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPV 335 (574)
T ss_pred EEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999876448999997643221 123456999998754321 111111
Q ss_pred CCCCCcccccccCCccccccCC-CCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhh
Q 012225 328 APSDIYNQWAAMTQPRSIRQNT-SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLA 406 (468)
Q Consensus 328 ~~p~~~~~~~~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~ 406 (468)
.|.+++.... ......+ ........|. ...+.++.+.... ...+..+|+|||++|..|++|+|++
T Consensus 336 -~p~~~~~~~~----~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~--~~~~~~~~~~n~~s~~~p~~P~L~~ 401 (574)
T PLN02191 336 -TPRWDDFERS----KNFSKKIFSAMGSPSPPK-------KYRKRLILLNTQN--LIDGYTKWAINNVSLVTPATPYLGS 401 (574)
T ss_pred -CCcccccchh----hcccccccccccCCCCCC-------cccceEEEecccc--eeCCeEEEEECcccCcCCCcchHHH
Confidence 1211111111 1111111 1000001111 1234555554321 2345679999999999899999988
Q ss_pred cccCCCcccccCCCCC--CC---------CCCCCcceEEEEecCCcEEEEEEecCC------CCCCceeccCCCceeeC
Q 012225 407 DKYNVKGAYKLDFPNK--PL---------TRPPRTDRSLINATYKGFIEIILQNND------TKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 407 ~~~~~~~~~~~~~~~~--p~---------~~~~~~~~~~~~~~~g~~Veivi~N~~------~~~HP~HLHGh~F~Vlg 468 (468)
.+.+.++.+..+.+.. +. ..+.+.+.+++.+++|+||||||+|.+ ...||||||||+|||||
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg 480 (574)
T PLN02191 402 VKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLG 480 (574)
T ss_pred HhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEE
Confidence 7654444443321111 00 012234667899999999999999985 67899999999999996
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.7e-80 Score=654.08 Aligned_cols=421 Identities=28% Similarity=0.533 Sum_probs=318.5
Q ss_pred cEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-CCCC
Q 012225 30 TIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TNCP 107 (468)
Q Consensus 30 ~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~ 107 (468)
+|+|+|+|++..+++||+.|.+|+|||++|||+|++++||+|+|+|+|++. ++++|||||++|.+++||||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 88999999999999999999998 9999
Q ss_pred cCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhhc--
Q 012225 108 IPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDS-- 185 (468)
Q Consensus 108 I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~-- 185 (468)
|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++..++.++ .+|+|++|+|+||+++...+....+..
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999976544454 468999999999999876543322221
Q ss_pred CCCCCCCceEEEcCcCCCCCCCccC-------------CCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEE
Q 012225 186 GKDLDMPDGVLINGKGPYRYNTTLV-------------PDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV 252 (468)
Q Consensus 186 g~~~~~~~~~liNG~~~~~~~~~~~-------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Vi 252 (468)
.....+++.++|||++.++|..... ...+....++|++|++|||||||+|....+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1223567999999999887753311 112344669999999999999999999999999999999999
Q ss_pred EeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCCCCCCC--CCCCCCC
Q 012225 253 ETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASG--PLPEAPS 330 (468)
Q Consensus 253 a~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~p~~~p 330 (468)
|+||.+++|..++.|.|++||||||+|++++.++++|||++....... .....+|||+|+++.....+ +.+. .|
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~-~p 314 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPV-TP 314 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCC-CC
Confidence 999999999999999999999999999999866548999987643311 23567899999875432111 1111 12
Q ss_pred CCcccccccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcccCCeEEEEEcCeeccCCCCchhhhcccC
Q 012225 331 DIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYN 410 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~ 410 (468)
.+.+..... .....+......+.|. ..+++++.+..... ..++..+|+|||.+|..|++|+|.+.++.
T Consensus 315 ~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~ 382 (541)
T TIGR03388 315 AWDDFDRSK----AFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYN 382 (541)
T ss_pred Cccccchhh----ccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhc
Confidence 111111100 0000000000011111 13456655544321 23456789999999988999999877554
Q ss_pred CCcccccCCC-----------CCCCCCCCCcceEEEEecCCcEEEEEEecCC------CCCCceeccCCCceeeC
Q 012225 411 VKGAYKLDFP-----------NKPLTRPPRTDRSLINATYKGFIEIILQNND------TKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 411 ~~~~~~~~~~-----------~~p~~~~~~~~~~~~~~~~g~~Veivi~N~~------~~~HP~HLHGh~F~Vlg 468 (468)
.++.+..+.+ ..+.....+.+++++.++.|++|||||+|.+ ...||||||||+|||||
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg 457 (541)
T TIGR03388 383 LLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLG 457 (541)
T ss_pred CCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEe
Confidence 4333332100 0111123456778999999999999999974 46799999999999996
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.7e-80 Score=649.71 Aligned_cols=420 Identities=23% Similarity=0.379 Sum_probs=311.5
Q ss_pred EEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-CCCCcC
Q 012225 32 FYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TNCPIP 109 (468)
Q Consensus 32 ~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 109 (468)
.|+|+|++..+++||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|+.++|+||+|+ |||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 6899999999999999999999999999999999999999999999997 89999999999999999999998 999999
Q ss_pred CCCceEEEEEeC-CCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhhcC--
Q 012225 110 SQWNWTYQFQVK-DQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDSG-- 186 (468)
Q Consensus 110 PG~~~~y~f~~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~g-- 186 (468)
||++|+|+|+++ +++||||||||.+.|+. ||+|+|||++++.. ++ .+|+|++|+|+||+++...++...+..+
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999985 58999999999999986 59999999987542 33 4589999999999999877654333222
Q ss_pred CCCCCCceEEEcCcCCCCCCCcc--CCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCe-eEEEEeeCcccccee
Q 012225 187 KDLDMPDGVLINGKGPYRYNTTL--VPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHN-LLLVETEGHYTSQQN 263 (468)
Q Consensus 187 ~~~~~~~~~liNG~~~~~~~~~~--~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~Via~DG~~~~p~~ 263 (468)
....+++.++|||+..+.|.... ....|..+.++|++||+|||||||+|....+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 12346789999999765542211 112355689999999999999999999999999999999 999999999999999
Q ss_pred eceEEEcCCceEEEEEEecCC-------CCcceEEEEEecccccccccccceEEEEEEcCCCCCCCCCCCCCCCCCcccc
Q 012225 264 YTSFEIHVGQSYSFLVTMDQN-------ASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQW 336 (468)
Q Consensus 264 ~d~i~l~pGqR~dv~v~~~~~-------~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~~p~~~~~~ 336 (468)
++.+.|++||||||+|+++++ ++ +|||++.....++ ....+|||+|+++.....+..|. .+. ..
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~-~~~---~~ 316 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPE-TPP---LP 316 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCC-CCC---CC
Confidence 999999999999999999975 35 9999997654332 25678999998654322111111 111 00
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCCCCccccceEEEEecCCCcc-cCCeEEEEEcCeeccC--CCCchhhhcccCCCc
Q 012225 337 AAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVT-IDGKVRSTLNGISFVK--PETPIRLADKYNVKG 413 (468)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~i~l~~~~~~~-~~g~~~~~iN~~s~~~--p~~P~l~~~~~~~~~ 413 (468)
.........+..+.+......+. +. ....+++++.+...+... .++..+|+|||++|.. |++|+|...+.+...
T Consensus 317 ~~~~~~~~~~~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~ 393 (538)
T TIGR03390 317 LPNSTYDWLEYELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLP 393 (538)
T ss_pred ccCcchhhhheeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCC
Confidence 00000000011111111100000 00 013567787777654211 2467899999999975 789998765432100
Q ss_pred ccccCCCCCCCCCCCCcceEEEEecCCcEEEEEEecCC--------CCCCceeccCCCceeeC
Q 012225 414 AYKLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNND--------TKMQSFHMDGYSFFVVG 468 (468)
Q Consensus 414 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivi~N~~--------~~~HP~HLHGh~F~Vlg 468 (468)
.. ..+...+...+....++++.++.|++|||+|+|.+ ...||||||||+|||||
T Consensus 394 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg 455 (538)
T TIGR03390 394 AT-PNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIG 455 (538)
T ss_pred cC-CCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEc
Confidence 00 00000000112233566788899999999999974 47899999999999997
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.1e-69 Score=564.91 Aligned_cols=262 Identities=24% Similarity=0.409 Sum_probs=223.9
Q ss_pred EEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC-CCCCcC
Q 012225 31 IFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIP 109 (468)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 109 (468)
++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+++++++|||||+++. +.+||+|+ +||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999874 67999998 999999
Q ss_pred CCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhh-----
Q 012225 110 SQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALD----- 184 (468)
Q Consensus 110 PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----- 184 (468)
||++|+|+|+++ ++||||||||...|+++||+|+|||++++.++. .+|+|++|+|+||+++....+...+.
T Consensus 124 PG~s~~Y~f~~~-~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPVR-QSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEECC-CCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 999999999995 799999999999999999999999998654333 45999999999999876544322111
Q ss_pred -----------------cCCC--------C--------------CCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCC
Q 012225 185 -----------------SGKD--------L--------------DMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGK 225 (468)
Q Consensus 185 -----------------~g~~--------~--------------~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~ 225 (468)
.|.. . .....+||||+... ..+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-----------~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-----------GNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-----------CCceEEECCCC
Confidence 0100 0 01124789998742 24679999999
Q ss_pred EEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccc
Q 012225 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQR 305 (468)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~ 305 (468)
+|||||||+|+.+.+.|+|+||+|+||++||++++|..++.+.|++||||||+|++++ .| .|+|++....+.
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-Cc-eEEEEEEecCCC------
Confidence 9999999999999999999999999999999999999999999999999999999873 46 899998765332
Q ss_pred cceEEEEEEcCC
Q 012225 306 VTGVAILHYSNS 317 (468)
Q Consensus 306 ~~~~ail~y~~~ 317 (468)
....++|++...
T Consensus 341 ~~~~~~l~~~~~ 352 (587)
T TIGR01480 341 GYARGTLAVRLG 352 (587)
T ss_pred ceEEEEEecCCC
Confidence 456778888654
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.9e-62 Score=510.20 Aligned_cols=246 Identities=18% Similarity=0.233 Sum_probs=207.7
Q ss_pred cEEEEEEEEEEEECCCCceE-EEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCc
Q 012225 30 TIFYDFKVSYITASPLGVPQ-QVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPI 108 (468)
Q Consensus 30 ~~~~~l~~~~~~~~~dG~~~-~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I 108 (468)
..+|+|++++...+++|..+ .+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCC
Confidence 34799999999999986554 69999999999999999999999999999999999999999886 4599987 9999
Q ss_pred CCCCceEEEEEeCCCceeeEEeeCc----cccccCCeeecEEEecCCCCCCCCC--CCCCcEEEEEeeeeecchHHHHHH
Q 012225 109 PSQWNWTYQFQVKDQIGSFFYFPSL----NLQRVSGGFGPVIINNRKVIPIPFD--QPEGDIIFLIGDWYTRNHTALRTA 182 (468)
Q Consensus 109 ~PG~~~~y~f~~~~~~Gt~wyH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~ 182 (468)
+||++|+|+|++.+++||||||||. +.|+.+||+|+|||++++..+.+.+ ...+|++++|+||+++.+.++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999994 7999999999999999765332232 245699999999999766544221
Q ss_pred hhcC--CCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEE-eCCeeEEEEeeCccc
Q 012225 183 LDSG--KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRI-QNHNLLLVETEGHYT 259 (468)
Q Consensus 183 ~~~g--~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~Via~DG~~~ 259 (468)
.+.. .....++.++|||+.. |.+.++ +++|||||||+|..+.+.|++ ++|+|+|||.||.++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l 265 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLL 265 (523)
T ss_pred ccccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcc
Confidence 1111 1123568999999986 667775 679999999999999999998 799999999999986
Q ss_pred -cceeeceEEEcCCceEEEEEEecCCCCcceEEEEEec
Q 012225 260 -SQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASAR 296 (468)
Q Consensus 260 -~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~ 296 (468)
+|..++.+.|+|||||||+|++++ ++ +|++.+...
T Consensus 266 ~~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~~ 301 (523)
T PRK10965 266 AEPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLPV 301 (523)
T ss_pred cCccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEecc
Confidence 699999999999999999999985 45 899887543
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.7e-59 Score=485.35 Aligned_cols=240 Identities=17% Similarity=0.265 Sum_probs=200.3
Q ss_pred EEEEEEEEEEECCC-CceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCC
Q 012225 32 FYDFKVSYITASPL-GVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPS 110 (468)
Q Consensus 32 ~~~l~~~~~~~~~d-G~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~P 110 (468)
.++|+++.....++ |..+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 47899999998888 56779999999999999999999999999999999999999999998754 466654 88999
Q ss_pred CCceEEEEEeCCCceeeEEeeCc----cccccCCeeecEEEecCCCCCCCCC--CCCCcEEEEEeeeeecchHHHHHHhh
Q 012225 111 QWNWTYQFQVKDQIGSFFYFPSL----NLQRVSGGFGPVIINNRKVIPIPFD--QPEGDIIFLIGDWYTRNHTALRTALD 184 (468)
Q Consensus 111 G~~~~y~f~~~~~~Gt~wyH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~ 184 (468)
|++|+|+|++.+++||||||||. +.|+.+||+|+|||+++...+.+++ ....|++|+|+||..+....... ..
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NE 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-cc
Confidence 99999999986679999999994 4599999999999999765333332 23459999999999876543211 01
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEE-eCCeeEEEEeeCccc-cce
Q 012225 185 SGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRI-QNHNLLLVETEGHYT-SQQ 262 (468)
Q Consensus 185 ~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~Via~DG~~~-~p~ 262 (468)
.......++.++|||+.. +.++|++| +|||||||+|..+.+.|++ ++|+|+|||.||.++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 111234678999999986 78999875 7999999999999999999 899999999997665 699
Q ss_pred eeceEEEcCCceEEEEEEecCCCCcceEEEE
Q 012225 263 NYTSFEIHVGQSYSFLVTMDQNASSDYYIVA 293 (468)
Q Consensus 263 ~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~ 293 (468)
.++.+.|+|||||||+|++++ ++ .+.+.+
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~ 295 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITA 295 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEEC
Confidence 999999999999999999975 34 666655
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.1e-50 Score=395.52 Aligned_cols=264 Identities=16% Similarity=0.158 Sum_probs=217.4
Q ss_pred ccCccEEEEEEEEEEEEC-CCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC--CCceeecCcccCCCCCCCCCCC
Q 012225 26 AEDDTIFYDFKVSYITAS-PLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD--ESLLMTWPGIQMRRNSWQDGVQ 102 (468)
Q Consensus 26 a~~~~~~~~l~~~~~~~~-~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv~ 102 (468)
+...+++|+|++++..++ .+|+.+.+|+|||++|||+||+++||+|+|+|+|++. .++++||||. .++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCCC
Confidence 455679999999999987 4699999999999999999999999999999999986 5899999997 3589987
Q ss_pred C-CCCCcCCCCceEEEEEeCCCceeeEEeeC----ccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchH
Q 012225 103 G-TNCPIPSQWNWTYQFQVKDQIGSFFYFPS----LNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHT 177 (468)
Q Consensus 103 ~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~ 177 (468)
. +| |+||++++|+|++ +++|||||||| +..|+.+||+|+|||++++.. +..|+|++|+++||+++...
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 6 66 9999999999999 58999999999 467999999999999987532 24589999999999997543
Q ss_pred HHHHHh--hcC-CCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEe
Q 012225 178 ALRTAL--DSG-KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVET 254 (468)
Q Consensus 178 ~~~~~~--~~g-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~ 254 (468)
...... ..+ .....++.++|||+.... .+.+++++|+++||||||++....+.||++||.+++|+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~ 239 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWV 239 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCC-----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEE
Confidence 211000 000 012457899999996421 145799999999999999999889999999999999999
Q ss_pred eCcccccee--eceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcCCC
Q 012225 255 EGHYTSQQN--YTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSK 318 (468)
Q Consensus 255 DG~~~~p~~--~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 318 (468)
||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... +....|+|.|++..
T Consensus 240 DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 240 TGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 999998643 89999999999999999996 68 9999987653321 14577999998754
No 17
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.3e-47 Score=392.53 Aligned_cols=230 Identities=22% Similarity=0.345 Sum_probs=190.9
Q ss_pred ECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC-CCCCcCCCCceEEEEEe
Q 012225 42 ASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQV 120 (468)
Q Consensus 42 ~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~y~f~~ 120 (468)
...++....+|++||++|||+||+++||+|+|+++|++.++++|||||+..+ +.+||++. +++++.||++++|.|+.
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~ 122 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ 122 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC
Confidence 3445667889999999999999999999999999999988899999998665 78999987 99999999999999999
Q ss_pred CCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeeeeecchHHHHHHhhcCCCCCCCceEEEcCc
Q 012225 121 KDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDSGKDLDMPDGVLINGK 200 (468)
Q Consensus 121 ~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~ 200 (468)
. ++||||||+|...|+.+||+|++||++....+. .+|++.++++.+|..+........ .........+..+|||.
T Consensus 123 ~-~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 D-VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred C-CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCC
Confidence 4 688999999999999999999999999765333 458888888888877644332221 01112234578999996
Q ss_pred CCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEE
Q 012225 201 GPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVT 280 (468)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~ 280 (468)
.. +.+.++. ++|||||+|++....+.+++.+++|+||++||.++++..++.+.|+|||||||+++
T Consensus 198 ~~--------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 198 IL--------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred cc--------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 64 5455554 55999999999777888998999999999999999998899999999999999999
Q ss_pred ecCCCCcceEEEEEe
Q 012225 281 MDQNASSDYYIVASA 295 (468)
Q Consensus 281 ~~~~~g~~y~i~~~~ 295 (468)
+++ ++ .+.+.+..
T Consensus 263 ~~~-~~-~~~l~~~~ 275 (451)
T COG2132 263 MND-GG-AVTLTALG 275 (451)
T ss_pred cCC-CC-eEEEEecc
Confidence 985 44 67776654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=7.6e-38 Score=263.78 Aligned_cols=116 Identities=34% Similarity=0.702 Sum_probs=107.9
Q ss_pred EEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC-CCCCcCCCCce
Q 012225 36 KVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNW 114 (468)
Q Consensus 36 ~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~ 114 (468)
.+++..+.++|..+++|+|||++|||+||+++||+|+|+|+|+++++++|||||+++...+++||+++ +||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 36788899998889999999999999999999999999999999999999999999988889999998 99999999999
Q ss_pred EEEEEeCCCceeeEEeeCccccccCCeeecEEEecCC
Q 012225 115 TYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRK 151 (468)
Q Consensus 115 ~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 151 (468)
+|+|++++++||||||||...|..+||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999997559999999998888789999999999863
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=1.9e-29 Score=225.55 Aligned_cols=154 Identities=32% Similarity=0.539 Sum_probs=125.3
Q ss_pred CcEEEEEeeeeecchHHHHH-HhhcC----CCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCC
Q 012225 162 GDIIFLIGDWYTRNHTALRT-ALDSG----KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGT 236 (468)
Q Consensus 162 ~e~~l~l~d~~~~~~~~~~~-~~~~g----~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~ 236 (468)
+|++|+|+||+|+....+.. .+..+ ...+.+++++|||++.++|.++.. ..+..+.+++++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 48899999999987766543 33322 236789999999999998875432 2345689999999999999999999
Q ss_pred CCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecccccccccccceEEEEEEcC
Q 012225 237 STSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSN 316 (468)
Q Consensus 237 ~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 316 (468)
...+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++| +|||++...........+.+.+|+|+|++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998677 99999963322222234588999999986
Q ss_pred C
Q 012225 317 S 317 (468)
Q Consensus 317 ~ 317 (468)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.80 E-value=3e-19 Score=156.20 Aligned_cols=104 Identities=11% Similarity=0.161 Sum_probs=82.9
Q ss_pred CCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC---CCceeecCcccCCCCCCCCCCCC-CCCCcCCC---C-c-
Q 012225 43 SPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD---ESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQ---W-N- 113 (468)
Q Consensus 43 ~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG---~-~- 113 (468)
...+.....+.++| .++|+|++++||+|+|+|+|.++ -...||+||...+..+.+||++. ++|+|.|+ + .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 33456667788899 56899999999999999999965 34567777765544556999997 99998884 1 1
Q ss_pred -eEEEEEeCCCceeeEEeeCccccccCCeeecEEEe
Q 012225 114 -WTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIIN 148 (468)
Q Consensus 114 -~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~ 148 (468)
.++.|+++ ++||||||||...|+.+||+|+|||+
T Consensus 114 ~~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 35566664 79999999999999999999999995
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.73 E-value=9.3e-18 Score=177.44 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=92.3
Q ss_pred ccEEEEEEEEEEEECCCCceEEEEEEcCcCCCc--eEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC---C
Q 012225 29 DTIFYDFKVSYITASPLGVPQQVIAINGKFPGA--VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ---G 103 (468)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP--~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~---~ 103 (468)
+.|++++.++. +..+.+|+|||+.+++ .|++++||+|+|+|.|....+|+|||||+..... ..||.. .
T Consensus 471 p~r~~~~~L~g------~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~ 543 (587)
T TIGR01480 471 PGREIELHLTG------NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRK 543 (587)
T ss_pred CCceEEEEEcC------CCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccC
Confidence 45666655532 2357889999998874 7999999999999999999999999999976532 236642 2
Q ss_pred CCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEe
Q 012225 104 TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIIN 148 (468)
Q Consensus 104 tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~ 148 (468)
.+..|+||++++|+|++ +++|+||||||...|...||++.+.|.
T Consensus 544 dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 544 HTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 34789999999999999 689999999999999999999999874
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.54 E-value=7.7e-14 Score=118.08 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=78.6
Q ss_pred HhhhhccccCccEEEEEEEE--EEEE---CCCCceEEEE-EEcCcCCCceEEEecCCEEEEEEEeCCCCCc--eeecCcc
Q 012225 19 LFSSLCFAEDDTIFYDFKVS--YITA---SPLGVPQQVI-AINGKFPGAVLNATTNNNIVINVQNDLDESL--LMTWPGI 90 (468)
Q Consensus 19 ~~~~~~~a~~~~~~~~l~~~--~~~~---~~dG~~~~~~-~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~--siH~HG~ 90 (468)
+++....|.++.|+|+++|. +..+ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.++ .+++||+
T Consensus 13 ~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi 92 (135)
T TIGR03096 13 GLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI 92 (135)
T ss_pred HHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc
Confidence 33334444555689999999 5444 5678887766 9999999999999999999999999987654 4555443
Q ss_pred cCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc
Q 012225 91 QMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL 133 (468)
Q Consensus 91 ~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~ 133 (468)
+..|+||++.+|+|++ +++|+|||||-.
T Consensus 93 --------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~ 120 (135)
T TIGR03096 93 --------------SEVIKAGETKTISFKA-DKAGAFTIWCQL 120 (135)
T ss_pred --------------ceEECCCCeEEEEEEC-CCCEEEEEeCCC
Confidence 2458999999999999 689999999963
No 23
>PRK10965 multicopper oxidase; Provisional
Probab=99.23 E-value=1.3e-09 Score=114.90 Aligned_cols=250 Identities=13% Similarity=0.074 Sum_probs=146.8
Q ss_pred EEEEEEEEEEEECCCCc--------------eEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeec-CcccCCC
Q 012225 31 IFYDFKVSYITASPLGV--------------PQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTW-PGIQMRR 94 (468)
Q Consensus 31 ~~~~l~~~~~~~~~dG~--------------~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~ 94 (468)
.++.|.++......+|. ....+++||+. .|.+.+. |.++++|+.|... ....+.+ .|....
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~- 256 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY- 256 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-
Confidence 35566666554444442 33568999995 6888885 6699999999975 4446665 454322
Q ss_pred CCCCCCCCC------CCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCC------eeecEEEecC--CC-CCC----
Q 012225 95 NSWQDGVQG------TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSG------GFGPVIINNR--KV-IPI---- 155 (468)
Q Consensus 95 ~~~~DGv~~------tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~G------l~G~liV~~~--~~-~~~---- 155 (468)
-...||.+. ....|.|||+++..+++. +.|.++...-...+...+ -+-.+.|... .. ...
T Consensus 257 vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l 335 (523)
T PRK10965 257 VIASDGGLLAEPVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL 335 (523)
T ss_pred EEEeCCCcccCccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh
Confidence 246888532 335589999999999985 567777765321111100 0112223311 10 000
Q ss_pred ----CCCC----CCCcEEEEEeeeee---------c-chHHHHH--------Hh--------hcCC--CCC---CCceEE
Q 012225 156 ----PFDQ----PEGDIIFLIGDWYT---------R-NHTALRT--------AL--------DSGK--DLD---MPDGVL 196 (468)
Q Consensus 156 ----~~~~----~~~e~~l~l~d~~~---------~-~~~~~~~--------~~--------~~g~--~~~---~~~~~l 196 (468)
+.+. ..+.+.+.+..+.- . ....... .+ +.+. ... ....++
T Consensus 336 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (523)
T PRK10965 336 ASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANK 415 (523)
T ss_pred ccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 01122333221100 0 0000000 00 0000 000 011248
Q ss_pred EcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccc---eeeceEEEcCCc
Q 012225 197 INGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQ---QNYTSFEIHVGQ 273 (468)
Q Consensus 197 iNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p---~~~d~i~l~pGq 273 (468)
|||+.+. ...+.++++.|++.+|+|+|.+....|.|||||+.|+|++.||.+..+ ...|+|.+.+ +
T Consensus 416 ING~~~~----------~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~ 484 (523)
T PRK10965 416 INGKAFD----------MNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-G 484 (523)
T ss_pred CCCeECC----------CCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-c
Confidence 9999862 123668899999999999999875579999999999999999987653 3579999976 7
Q ss_pred eEEEEEEecCC---CCcceEEEEEec
Q 012225 274 SYSFLVTMDQN---ASSDYYIVASAR 296 (468)
Q Consensus 274 R~dv~v~~~~~---~g~~y~i~~~~~ 296 (468)
++.++++++.+ +| .|-.+.+..
T Consensus 485 ~~~i~~~f~~~~~~~g-~~~~HCHiL 509 (523)
T PRK10965 485 RSEVLVKFDHDAPKEH-AYMAHCHLL 509 (523)
T ss_pred EEEEEEEecCCCCCCC-CEEEEeCch
Confidence 89999999843 34 666666543
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.15 E-value=5.7e-09 Score=111.00 Aligned_cols=246 Identities=10% Similarity=0.086 Sum_probs=145.2
Q ss_pred EEEEEcCcC-C--------CceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCce
Q 012225 50 QVIAINGKF-P--------GAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNW 114 (468)
Q Consensus 50 ~~~~~Ng~~-P--------gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~ 114 (468)
..++|||+. + -++|++++|+++++|+.|... ....+|.+|..... ...||++. ....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 148999999999999999975 55678888887653 56899853 23558999999
Q ss_pred EEEEEeCCCceeeEEeeCccc--c--cc-CCeeecEEEecCCCCCCC---C-CCCCCc---------EE-EEEeeeeec-
Q 012225 115 TYQFQVKDQIGSFFYFPSLNL--Q--RV-SGGFGPVIINNRKVIPIP---F-DQPEGD---------II-FLIGDWYTR- 174 (468)
Q Consensus 115 ~y~f~~~~~~Gt~wyH~H~~~--q--~~-~Gl~G~liV~~~~~~~~~---~-~~~~~e---------~~-l~l~d~~~~- 174 (468)
+..+++.+.+|.||.+.+... + .. ..-.+.|..++......+ . +..+.. +. +....+-..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999999545899999987421 1 11 112233333322211111 0 000000 00 000000000
Q ss_pred ---chH----HHHHHhhcCC-----C-CCCCceEEEcCcCCCCCCCc---------------------c-----CCC---
Q 012225 175 ---NHT----ALRTALDSGK-----D-LDMPDGVLINGKGPYRYNTT---------------------L-----VPD--- 212 (468)
Q Consensus 175 ---~~~----~~~~~~~~g~-----~-~~~~~~~liNG~~~~~~~~~---------------------~-----~~~--- 212 (468)
.+. .+...+.... . ....-.+.|||..+..-... . .+.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 000 0000000000 0 00112457888763210000 0 000
Q ss_pred -C----CcceEEEEcCCCEEEEEEEEcCC--CCeeeEEEeCCeeEEEEee-Ccc-----------ccceeeceEEEcCCc
Q 012225 213 -G----IEYETINVDPGKTYRVRVHNVGT--STSLNFRIQNHNLLLVETE-GHY-----------TSQQNYTSFEIHVGQ 273 (468)
Q Consensus 213 -~----~~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~Via~D-G~~-----------~~p~~~d~i~l~pGq 273 (468)
+ ....++.++.|+++.+.|.|.+. ...|.||+|||+|.|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 0 01246889999999999999753 3379999999999999886 322 236778999999999
Q ss_pred eEEEEEEecCCCCcceEEEEEeccc
Q 012225 274 SYSFLVTMDQNASSDYYIVASARFV 298 (468)
Q Consensus 274 R~dv~v~~~~~~g~~y~i~~~~~~~ 298 (468)
.+-+.+++++ || .+.++.+..+.
T Consensus 486 ~vvirf~adN-PG-~W~~HCHi~~H 508 (539)
T TIGR03389 486 WAAIRFVADN-PG-VWFMHCHLEVH 508 (539)
T ss_pred eEEEEEecCC-Ce-EEEEEecccch
Confidence 9999999995 67 56677776654
No 25
>PLN02835 oxidoreductase
Probab=99.14 E-value=5.4e-09 Score=110.57 Aligned_cols=244 Identities=11% Similarity=0.148 Sum_probs=148.2
Q ss_pred EEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCC
Q 012225 49 QQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKD 122 (468)
Q Consensus 49 ~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~ 122 (468)
...++|||+. .+++++++|+++++|+.|... ....+|+.|..... ...||.+. ....|.|||+++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3679999996 489999999999999999986 46788999987643 56899864 2244999999999999965
Q ss_pred CceeeEEeeCcccc-ccCCeeecEEEecCCC---CCCCC-CCCCC--c------EEEEEeeeeecchHH----H-----H
Q 012225 123 QIGSFFYFPSLNLQ-RVSGGFGPVIINNRKV---IPIPF-DQPEG--D------IIFLIGDWYTRNHTA----L-----R 180 (468)
Q Consensus 123 ~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~---~~~~~-~~~~~--e------~~l~l~d~~~~~~~~----~-----~ 180 (468)
.+|.||.+.-.... ......+.|-.++... .+.|. +..+. + ....+.......... . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 68999998632111 1111233333322211 01111 00000 0 000011100000000 0 0
Q ss_pred HH--hhcC-CCCCCCceEEEcCcCCCCCCCc-------------------cCCCC----CcceEEEEcCCCEEEEEEEEc
Q 012225 181 TA--LDSG-KDLDMPDGVLINGKGPYRYNTT-------------------LVPDG----IEYETINVDPGKTYRVRVHNV 234 (468)
Q Consensus 181 ~~--~~~g-~~~~~~~~~liNG~~~~~~~~~-------------------~~~~~----~~~~~~~v~~G~~~rlRliN~ 234 (468)
.. +... ........+.+||..+..-... ..... .....+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 00 0000 0000013577898886421000 00000 012456788899999999998
Q ss_pred CCCCeeeEEEeCCeeEEEEe-eCcc----------ccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecc
Q 012225 235 GTSTSLNFRIQNHNLLLVET-EGHY----------TSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARF 297 (468)
Q Consensus 235 ~~~~~~~~~i~gh~~~Via~-DG~~----------~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~ 297 (468)
+.. .|.||+|||+|.|++. +|.+ ..|...|++.+.++...-+.+++|+ || .+.++.+...
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG-~Wl~HCHi~~ 499 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QG-MWNMRSAIWE 499 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CE-Eeeeeecchh
Confidence 665 6999999999999987 5533 2388899999999999999999995 67 6667777643
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.08 E-value=6.7e-09 Score=108.40 Aligned_cols=236 Identities=10% Similarity=0.041 Sum_probs=137.2
Q ss_pred EEEEEEEEEEECCCC-----------ceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeec-CcccCCCCCCC
Q 012225 32 FYDFKVSYITASPLG-----------VPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTW-PGIQMRRNSWQ 98 (468)
Q Consensus 32 ~~~l~~~~~~~~~dG-----------~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~ 98 (468)
++.|.++......+| ....++++||+. .|.+.++.| ++++|+.|... ....+++ .|..... ...
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAG 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEe
Confidence 555666554433323 334679999995 689999875 89999999986 4567887 5653321 457
Q ss_pred CCCC----C--CCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeec------------EEEecCCCCCCCCCCC
Q 012225 99 DGVQ----G--TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGP------------VIINNRKVIPIPFDQP 160 (468)
Q Consensus 99 DGv~----~--tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~------------liV~~~~~~~~~~~~~ 160 (468)
||-+ . .+..|.|||+++.-.++. +.+.+..++-......+++.+. +-++.....+ +.
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 332 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV--- 332 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---
Confidence 8532 1 335589999999999984 5567777653111111111111 1111111000 00
Q ss_pred CCcEEEEEeeeeecchHHH-HHHhhcCCCCCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCe
Q 012225 161 EGDIIFLIGDWYTRNHTAL-RTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTS 239 (468)
Q Consensus 161 ~~e~~l~l~d~~~~~~~~~-~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~ 239 (468)
....+..+........... ...+..+ .+.+.|||+.+.. ....++++.|++.+|+|.|.. .
T Consensus 333 ~~~~p~~l~~~~~~~~~~~~~~~~~l~-----~~~~~INg~~~~~----------~~~~~~~~~g~~e~W~~~n~~---~ 394 (471)
T PRK10883 333 TDNLPMRLLPDEIMEGSPIRSREISLG-----DDLPGINGALWDM----------NRIDVTAQQGTWERWTVRADM---P 394 (471)
T ss_pred CCcCChhhcCCCCCCCCCcceEEEEec-----CCcCccCCcccCC----------CcceeecCCCCEEEEEEECCC---C
Confidence 0000000000000000000 0000000 1134799998721 124478999999999998862 5
Q ss_pred eeEEEeCCeeEEEEeeCccccc---eeeceEEEcCCceEEEEEEecCCCCc--ceEEEEEe
Q 012225 240 LNFRIQNHNLLLVETEGHYTSQ---QNYTSFEIHVGQSYSFLVTMDQNASS--DYYIVASA 295 (468)
Q Consensus 240 ~~~~i~gh~~~Via~DG~~~~p---~~~d~i~l~pGqR~dv~v~~~~~~g~--~y~i~~~~ 295 (468)
|.||||+|.|+|++.||....+ ...|+|.+. +++.+++++++..+. .|-.+.+.
T Consensus 395 HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHi 453 (471)
T PRK10883 395 QAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQT 453 (471)
T ss_pred cCEeECCccEEEEEecCCCCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeeccc
Confidence 9999999999999999986543 237999993 479999999976542 35555543
No 27
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.06 E-value=1.4e-10 Score=101.02 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=73.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCC-------------CC--CCCCcCCCCceEEEEEeCCCc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGV-------------QG--TNCPIPSQWNWTYQFQVKDQI 124 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv-------------~~--tq~~I~PG~~~~y~f~~~~~~ 124 (468)
.+.++++.|+.+++.+.|.....+++|+||.........++. +. ....|.||++.+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 579999999999999999999999999999875421111111 11 23458999999999999 689
Q ss_pred eeeEEeeCccccccCCeeecEEEecC
Q 012225 125 GSFFYFPSLNLQRVSGGFGPVIINNR 150 (468)
Q Consensus 125 Gt~wyH~H~~~q~~~Gl~G~liV~~~ 150 (468)
|.|.||||...+...||.+.+.|.+.
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 99999999999999999999999863
No 28
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=3.8e-08 Score=102.82 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=143.5
Q ss_pred CceEEEEEEcCcCCCceEEEecCCEEEEEEEeCC-CCCceeecCcccCCCCCCCCCCC----C-CCCCcCCCCceEEEEE
Q 012225 46 GVPQQVIAINGKFPGAVLNATTNNNIVINVQNDL-DESLLMTWPGIQMRRNSWQDGVQ----G-TNCPIPSQWNWTYQFQ 119 (468)
Q Consensus 46 G~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~----~-tq~~I~PG~~~~y~f~ 119 (468)
|.......+||+. -| +.+.++..+++|+.|.. .....+++.|.+... -..||.+ . .+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455667888854 24 45555666999999998 566677777665543 3467765 2 4567899999999999
Q ss_pred eCCCceeeEEeeCccccccCCeeecEEEecCCCCCCCCCCCCCcEEEEEeee-eecchHHHHHHh-hcC----C-----C
Q 012225 120 VKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDW-YTRNHTALRTAL-DSG----K-----D 188 (468)
Q Consensus 120 ~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~-~~~~~~~~~~~~-~~g----~-----~ 188 (468)
.. ..|++-+.|.. .+..+-+.+..-...... .++...+.+......|- .+.........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILT--PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccc--cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47899998876 222222333222221110 01111111111111110 010000000000 000 0 0
Q ss_pred CCCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccc--cceeece
Q 012225 189 LDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT--SQQNYTS 266 (468)
Q Consensus 189 ~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~--~p~~~d~ 266 (468)
.-....+.+||+.+.. ....+.++.|+++||++.|-+.. .|.||+||+.|.|++.|...- .+..+|+
T Consensus 339 ~~~~~~~~~n~~~~~~----------~~~~~~~~~G~~~~~~i~n~~~~-~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT 407 (451)
T COG2132 339 GIGGYVWAINGKAFDD----------NRVTLIAKAGTRERWVLTNDTPM-PHPFHLHGHFFQVLSGDAPAPGAAPGWKDT 407 (451)
T ss_pred ccccccccccCccCCC----------CcCceeecCCCEEEEEEECCCCC-ccCeEEcCceEEEEecCCCcccccCccceE
Confidence 0122458888888731 24678999999999999999984 799999999999999982211 2456899
Q ss_pred EEEcCCceEEEEEEecCCCCcceEEEEEec
Q 012225 267 FEIHVGQSYSFLVTMDQNASSDYYIVASAR 296 (468)
Q Consensus 267 i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~ 296 (468)
+.+.++++..+.++++. +| .|.++.+..
T Consensus 408 v~v~~~~~~~v~~~a~~-~g-~~~~HCH~l 435 (451)
T COG2132 408 VLVAPGERLLVRFDADY-PG-PWMFHCHIL 435 (451)
T ss_pred EEeCCCeEEEEEEeCCC-CC-ceEEeccch
Confidence 99999999999999994 56 788877754
No 29
>PRK02710 plastocyanin; Provisional
Probab=98.89 E-value=2.4e-08 Score=84.54 Aligned_cols=74 Identities=14% Similarity=0.289 Sum_probs=56.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccC
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVS 139 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~ 139 (468)
.+.|++++||+| +++|....+|++.+.|.. +...+...+.||++++|.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 379999999985 567887788888765431 111122347899999999974 899999996 56668
Q ss_pred CeeecEEEe
Q 012225 140 GGFGPVIIN 148 (468)
Q Consensus 140 Gl~G~liV~ 148 (468)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=98.88 E-value=1.4e-07 Score=100.13 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=144.8
Q ss_pred EEEEEcCcCC------CceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEE
Q 012225 50 QVIAINGKFP------GAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQ 117 (468)
Q Consensus 50 ~~~~~Ng~~P------gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~ 117 (468)
..++|||+-. -|+|++++|+++++|+.|... ....+|..|..+.. ...||++. ....|.|||+++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL-VEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE-EEeCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 379999999999999999985 55778888887643 57899863 22459999999999
Q ss_pred EEeCCCceeeEEeeCcccc-ccCCeeecEEEecCCCCC-CCCCCCCCcEEEEE---eeeee-------cch--H------
Q 012225 118 FQVKDQIGSFFYFPSLNLQ-RVSGGFGPVIINNRKVIP-IPFDQPEGDIIFLI---GDWYT-------RNH--T------ 177 (468)
Q Consensus 118 f~~~~~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~~~-~~~~~~~~e~~l~l---~d~~~-------~~~--~------ 177 (468)
+++.+.+|.||........ ......|.|..++..... .+.+....+..... .+... ... .
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 9996568999998874211 111223333333321100 00110000000000 00000 000 0
Q ss_pred -HHHHH--hhcCC-CCCCCceEEEcCcCCCCCCCc---------cCCC-----------------CCcceEEEEcCCCEE
Q 012225 178 -ALRTA--LDSGK-DLDMPDGVLINGKGPYRYNTT---------LVPD-----------------GIEYETINVDPGKTY 227 (468)
Q Consensus 178 -~~~~~--~~~g~-~~~~~~~~liNG~~~~~~~~~---------~~~~-----------------~~~~~~~~v~~G~~~ 227 (468)
.+... +.... .......+.|||..+..-... ..+. ......+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 00000 00000 000013567888775321100 0000 011245778889999
Q ss_pred EEEEEEcCCCCeeeEEEeCCeeEEEEee-C----------ccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 228 RVRVHNVGTSTSLNFRIQNHNLLLVETE-G----------HYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 228 rlRliN~~~~~~~~~~i~gh~~~Via~D-G----------~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
.+-|.|.... .|.||+|||+|.|++.. | ++..|...|++.+.++.-.-+.+++|+ || -+.|+.+.
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-vW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AG-MWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-Ce-EEeeeccc
Confidence 9999987554 69999999999999663 2 123488899999999999999999995 67 66677775
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.85 E-value=6.4e-08 Score=103.03 Aligned_cols=233 Identities=9% Similarity=0.051 Sum_probs=133.9
Q ss_pred eEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCCCc-eeeEEeeCcc
Q 012225 62 VLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKDQI-GSFFYFPSLN 134 (468)
Q Consensus 62 ~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~~~-Gt~wyH~H~~ 134 (468)
.|.|++|+++++|+.|... ....+++.|..... ...||.+. ....|.|||+++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 5899999999999999874 66778888876543 56899863 234589999999999994334 5899986533
Q ss_pred cccc-CCeeecEEEecC-CCCCCC---C---CCCCC-----cEEE-EEeee-eecchHHHHHH--h-hcCCCCCCCceEE
Q 012225 135 LQRV-SGGFGPVIINNR-KVIPIP---F---DQPEG-----DIIF-LIGDW-YTRNHTALRTA--L-DSGKDLDMPDGVL 196 (468)
Q Consensus 135 ~q~~-~Gl~G~liV~~~-~~~~~~---~---~~~~~-----e~~l-~l~d~-~~~~~~~~~~~--~-~~g~~~~~~~~~l 196 (468)
.+.. .....+++.... .....+ . +..+. +..+ .+... ........... + ..+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 2211 111123333321 110000 0 00000 0000 00000 00000000000 0 0000001122467
Q ss_pred EcCcCCCCCCCc-----------------c---------------C-CCCCcceEEEEcCCCEEEEEEEEcCC-----CC
Q 012225 197 INGKGPYRYNTT-----------------L---------------V-PDGIEYETINVDPGKTYRVRVHNVGT-----ST 238 (468)
Q Consensus 197 iNG~~~~~~~~~-----------------~---------------~-~~~~~~~~~~v~~G~~~rlRliN~~~-----~~ 238 (468)
+||..+..-... . . .......++.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 888765311000 0 0 00001245789999999999999752 34
Q ss_pred eeeEEEeCCeeEEEEee-Ccc-----------ccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecc
Q 012225 239 SLNFRIQNHNLLLVETE-GHY-----------TSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARF 297 (468)
Q Consensus 239 ~~~~~i~gh~~~Via~D-G~~-----------~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~ 297 (468)
.|.||+|||+|.|++.. |.+ ..|...|++.+.++.-+-+.+++++ || -+.++.+...
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG-~W~~HCHi~~ 511 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PG-VWAFHCHIEP 511 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-Ce-Eeeeeccchh
Confidence 69999999999999986 443 1377789999999999999999995 67 5556777654
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=98.82 E-value=4.4e-07 Score=96.04 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=143.1
Q ss_pred EEEEEcCcCC-CceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCC
Q 012225 50 QVIAINGKFP-GAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKD 122 (468)
Q Consensus 50 ~~~~~Ng~~P-gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~ 122 (468)
..+++||+.+ .|+|++++|+++++|+.|... ....++..|..+.. ...||.+. .+..|.|||+++..+++.+
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 5689999953 579999999999999999975 45778888877654 46899853 2355999999999999963
Q ss_pred Cc-e---eeEEeeCcc--ccccCCeeecEEEecCCCCC-CCCC---CC-CC----cEEEEEe-eee---ecchH------
Q 012225 123 QI-G---SFFYFPSLN--LQRVSGGFGPVIINNRKVIP-IPFD---QP-EG----DIIFLIG-DWY---TRNHT------ 177 (468)
Q Consensus 123 ~~-G---t~wyH~H~~--~q~~~Gl~G~liV~~~~~~~-~~~~---~~-~~----e~~l~l~-d~~---~~~~~------ 177 (468)
++ | .||.+.-.. .+...+ .|.|-.+.....+ .|.+ .. +. +....+. ... .....
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-VALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-EEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 43 4 899986532 122222 2233222221110 0110 00 00 1000000 000 00000
Q ss_pred ---HHHHHhhcCCCC---CCCceEEEcCcCCCCCCCc-c------------C---CC-------CCcceEEEEcCCCEEE
Q 012225 178 ---ALRTALDSGKDL---DMPDGVLINGKGPYRYNTT-L------------V---PD-------GIEYETINVDPGKTYR 228 (468)
Q Consensus 178 ---~~~~~~~~g~~~---~~~~~~liNG~~~~~~~~~-~------------~---~~-------~~~~~~~~v~~G~~~r 228 (468)
.+...+...... .....+.|||..+..-... . . +. ......+.++.|+.|-
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 000000000000 0013577888885421000 0 0 00 0012457888999998
Q ss_pred EEEEEcCCCCeeeEEEeCCeeEEEEe-----eC------ccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 229 VRVHNVGTSTSLNFRIQNHNLLLVET-----EG------HYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 229 lRliN~~~~~~~~~~i~gh~~~Via~-----DG------~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
+=|-|.... .|.||+|||+|.|++. |+ ++..|...|++.+.++.-.-+.+++++ || .+.++.+.
T Consensus 427 iViqn~~~~-~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLFS-LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QG-MWNVRSQK 501 (545)
T ss_pred EEEeCCCCC-CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-Ce-EEeeeecC
Confidence 888886554 7999999999999976 21 234588899999999999999999995 67 66677775
No 33
>PLN02792 oxidoreductase
Probab=98.82 E-value=1e-06 Score=93.27 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=143.5
Q ss_pred EEEEEEcCcCC--CceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEe
Q 012225 49 QQVIAINGKFP--GAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQV 120 (468)
Q Consensus 49 ~~~~~~Ng~~P--gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~ 120 (468)
-..++|||+-. .++|.+++|+++++|+.|... ....+++.|..+.. ...||.+. ....|.|||+++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV-I~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL-IEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE-EEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 36799999942 478999999999999999976 45688888887653 56899753 23459999999999999
Q ss_pred CCCceeeEEeeCccccccCCeee-cEEEecCCCCCC---C-CC-CCCCcEEEEE---eeeeec-----chH---------
Q 012225 121 KDQIGSFFYFPSLNLQRVSGGFG-PVIINNRKVIPI---P-FD-QPEGDIIFLI---GDWYTR-----NHT--------- 177 (468)
Q Consensus 121 ~~~~Gt~wyH~H~~~q~~~Gl~G-~liV~~~~~~~~---~-~~-~~~~e~~l~l---~d~~~~-----~~~--------- 177 (468)
.+.+|.||........- ..+.+ +|+-........ + .+ ..+.+...-. .++... ...
T Consensus 258 ~~~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 258 DQPPQNYSIVVSTRFIA-AKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred CCCCceEEEEEEeccCC-CCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 65579999986532110 11122 333322111100 0 00 0001100000 000000 000
Q ss_pred HHHHHh--hcC-CCCCCCceEEEcCcCCCCCCCc-c---------------CCC--------CCcceEEEEcCCCEEEEE
Q 012225 178 ALRTAL--DSG-KDLDMPDGVLINGKGPYRYNTT-L---------------VPD--------GIEYETINVDPGKTYRVR 230 (468)
Q Consensus 178 ~~~~~~--~~g-~~~~~~~~~liNG~~~~~~~~~-~---------------~~~--------~~~~~~~~v~~G~~~rlR 230 (468)
.+...+ ... ......-.+.|||..+..-... + .+. .....++.++.|+.+-+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 000000 000 0000012467888875421100 0 000 001345788999999999
Q ss_pred EEEcCCCCeeeEEEeCCeeEEEEe-eC----------ccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEec
Q 012225 231 VHNVGTSTSLNFRIQNHNLLLVET-EG----------HYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASAR 296 (468)
Q Consensus 231 liN~~~~~~~~~~i~gh~~~Via~-DG----------~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~ 296 (468)
|-|.... .|.||+|||+|.||+. +| +++.|...|++.+.++.-.-+.+++|+ || -+.++.+..
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PG-vW~~HCh~~ 490 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VG-MWNLRSQFW 490 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CE-EEeeeEcch
Confidence 8886554 6999999999999974 22 233488899999999999999999995 57 566777543
No 34
>PLN02991 oxidoreductase
Probab=98.78 E-value=1.4e-06 Score=92.05 Aligned_cols=242 Identities=13% Similarity=0.113 Sum_probs=142.9
Q ss_pred EEEEEEcCcCCCceEEEecCCEEEEEEEeCCCC-CceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCC
Q 012225 49 QQVIAINGKFPGAVLNATTNNNIVINVQNDLDE-SLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKD 122 (468)
Q Consensus 49 ~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~-~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~ 122 (468)
-..++|||+...+++.+++|+++++|+.|.... ...+++.|..... ...||.+. .+..|.|||+++...++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 367899999656899999999999999999764 4678888877543 56899752 3355899999999999965
Q ss_pred CceeeEEeeCcc--ccccCCeeecEEEecCCCCC-CCCCC--CCCcEEEEEe---eeeec-----c--hH-------HHH
Q 012225 123 QIGSFFYFPSLN--LQRVSGGFGPVIINNRKVIP-IPFDQ--PEGDIIFLIG---DWYTR-----N--HT-------ALR 180 (468)
Q Consensus 123 ~~Gt~wyH~H~~--~q~~~Gl~G~liV~~~~~~~-~~~~~--~~~e~~l~l~---d~~~~-----~--~~-------~~~ 180 (468)
.+|.||.-.-.. .+... -.+.|-.+...... .+.+. .+.+...-.. ++... . .. .+.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~-~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILI-TTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcc-eEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 688899865421 11111 12222222221100 01110 0000000000 00000 0 00 000
Q ss_pred HH--hhcCCC-CCCCceEEEcCcCCCCCCCcc--------C-----------C----CCCcceEEEEcCCCEEEEEEEEc
Q 012225 181 TA--LDSGKD-LDMPDGVLINGKGPYRYNTTL--------V-----------P----DGIEYETINVDPGKTYRVRVHNV 234 (468)
Q Consensus 181 ~~--~~~g~~-~~~~~~~liNG~~~~~~~~~~--------~-----------~----~~~~~~~~~v~~G~~~rlRliN~ 234 (468)
.. +..... ......+.|||..+..-.... . + .......+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 00 000000 000125778888764210000 0 0 00112346778888888888886
Q ss_pred CCCCeeeEEEeCCeeEEEEee-C----------ccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 235 GTSTSLNFRIQNHNLLLVETE-G----------HYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 235 ~~~~~~~~~i~gh~~~Via~D-G----------~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
... .|.||+|||+|.|++.. | ++..|...|++.+.++.-.-+.+++++ || .+.++.+.
T Consensus 428 ~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-~W~~HCHi 496 (543)
T PLN02991 428 EDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VG-MWNLRSEL 496 (543)
T ss_pred CCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CE-EeeeeeCc
Confidence 554 79999999999999753 1 123478899999999999999999995 57 66677775
No 35
>PLN02604 oxidoreductase
Probab=98.76 E-value=3.8e-07 Score=97.50 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=135.0
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCCCce-eeEEeeCc
Q 012225 61 AVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKDQIG-SFFYFPSL 133 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~~~G-t~wyH~H~ 133 (468)
++|.+++|+++++|+.|... ....+++-|..... ...||.+. ....|.|||+++..+++.+.+| .||-+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~V-Ia~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEE-EEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999975 45667777776543 56899864 2345899999999999954455 79998652
Q ss_pred c---ccccCCeeecEEEecCCC--CCCCCCCCC----CcEEEEEeeee---------ecchHHHHHH---hhcCCCCCCC
Q 012225 134 N---LQRVSGGFGPVIINNRKV--IPIPFDQPE----GDIIFLIGDWY---------TRNHTALRTA---LDSGKDLDMP 192 (468)
Q Consensus 134 ~---~q~~~Gl~G~liV~~~~~--~~~~~~~~~----~e~~l~l~d~~---------~~~~~~~~~~---~~~g~~~~~~ 192 (468)
. .|...| . +|+...... ...+..... .+....+.... .......... ..........
T Consensus 303 ~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 2 123333 2 233322111 011110000 00000000000 0000000000 0000000011
Q ss_pred ceEEEcCcCCCCCCC----------------ccC------------------CCCCcceEEEEcCCCEEEEEEEEcCC--
Q 012225 193 DGVLINGKGPYRYNT----------------TLV------------------PDGIEYETINVDPGKTYRVRVHNVGT-- 236 (468)
Q Consensus 193 ~~~liNG~~~~~~~~----------------~~~------------------~~~~~~~~~~v~~G~~~rlRliN~~~-- 236 (468)
..+.|||..+..-.. ... .......++.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 357788876532100 000 00111235889999999999999753
Q ss_pred ---CCeeeEEEeCCeeEEEEee-Ccc-----------ccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEecc
Q 012225 237 ---STSLNFRIQNHNLLLVETE-GHY-----------TSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARF 297 (468)
Q Consensus 237 ---~~~~~~~i~gh~~~Via~D-G~~-----------~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~ 297 (468)
...|.||+|||+|.|++.+ |.+ ..|...|++.+.++.-.-+.+++++ || .+.++.+...
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG-~WlfHCHI~~ 534 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PG-VWAFHCHIES 534 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-Ce-EeeEeecchh
Confidence 3579999999999999987 432 1367789999999999999999995 67 5667777654
No 36
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.72 E-value=2.1e-08 Score=82.87 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhccccCccEEEEEEEEEEEECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCccc
Q 012225 12 VLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQ 91 (468)
Q Consensus 12 ~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~ 91 (468)
++++.+++++.+++..++.+.+++++++. ++-...|+++.|++|+|+++|.....+.+...++.
T Consensus 2 i~~l~~~~~~~~~~~~~~~~~v~I~~~~~----------------~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~ 65 (104)
T PF13473_consen 2 IAALAAALALSSSASAAAAQTVTITVTDF----------------GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLG 65 (104)
T ss_dssp ----------------------------E----------------EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGT
T ss_pred cccccccccccccccccccccccccccCC----------------eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCc
Confidence 33443444433344344445555555544 33235999999999999999998887777766643
Q ss_pred CCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEE
Q 012225 92 MRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVII 147 (468)
Q Consensus 92 ~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV 147 (468)
. ...|.||++.++.|+. +++|+|=|+|.... . |.|.|||
T Consensus 66 ~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 66 I------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp E------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-TB-----
T ss_pred e------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-ceecccC
Confidence 2 2458999999999987 68999999998554 2 6777775
No 37
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.69 E-value=5.7e-07 Score=95.61 Aligned_cols=244 Identities=10% Similarity=0.093 Sum_probs=141.6
Q ss_pred EEEEEcCcC---------------CCceEEEecCCEEEEEEEeCCCC-CceeecCccc-CCCCCCCCCCCC-----CCCC
Q 012225 50 QVIAINGKF---------------PGAVLNATTNNNIVINVQNDLDE-SLLMTWPGIQ-MRRNSWQDGVQG-----TNCP 107 (468)
Q Consensus 50 ~~~~~Ng~~---------------PgP~i~~~~Gd~v~v~v~N~l~~-~~siH~HG~~-~~~~~~~DGv~~-----tq~~ 107 (468)
..+++||+. ..|+|++++|+++++|+.|.... ...+++.|.. +.. ...||.+. ....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~V-Ia~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTI-IEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEE-EEeCCCCCCceEeCeEE
Confidence 468999983 13789999999999999999864 4678887775 432 56899853 2244
Q ss_pred cCCCCceEEEEEeCCC-------ceeeEEeeCcc--ccccCCeeecEEEecCCCCCCC---C-C--CCC------CcEEE
Q 012225 108 IPSQWNWTYQFQVKDQ-------IGSFFYFPSLN--LQRVSGGFGPVIINNRKVIPIP---F-D--QPE------GDIIF 166 (468)
Q Consensus 108 I~PG~~~~y~f~~~~~-------~Gt~wyH~H~~--~q~~~Gl~G~liV~~~~~~~~~---~-~--~~~------~e~~l 166 (468)
|.|||+++..+++.+. +|-||...-.. .+... ..|.|..+.......+ . + ... .|.-+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 8999999999999532 38899875421 12211 2333333222111111 0 0 000 11100
Q ss_pred -EEeeeee---cchHHHHH--HhhcCCCC---CCCceEEEcCcCCCCC-CCc------cCC----------------CCC
Q 012225 167 -LIGDWYT---RNHTALRT--ALDSGKDL---DMPDGVLINGKGPYRY-NTT------LVP----------------DGI 214 (468)
Q Consensus 167 -~l~d~~~---~~~~~~~~--~~~~g~~~---~~~~~~liNG~~~~~~-~~~------~~~----------------~~~ 214 (468)
-+..-.. ........ .+..+... .....+++||..+... ... ... ...
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 0100000 00000000 00011100 1124688999876421 110 000 000
Q ss_pred cceEEEEcCCCEEEEEEEEcC-------CCCeeeEEEeCCeeEEEEe-eCcc-----------ccceeeceEEEc-----
Q 012225 215 EYETINVDPGKTYRVRVHNVG-------TSTSLNFRIQNHNLLLVET-EGHY-----------TSQQNYTSFEIH----- 270 (468)
Q Consensus 215 ~~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~Via~-DG~~-----------~~p~~~d~i~l~----- 270 (468)
...++.++.|+.+++.|.|.. ....|.||+|||+|.||+. +|.+ ..|...|++.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~ 489 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVK 489 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccccc
Confidence 113578899999999999975 2457999999999999985 4543 237788999883
Q ss_pred -----CCceEEEEEEecCCCCcceEEEEEecc
Q 012225 271 -----VGQSYSFLVTMDQNASSDYYIVASARF 297 (468)
Q Consensus 271 -----pGqR~dv~v~~~~~~g~~y~i~~~~~~ 297 (468)
++.-+-+.+++++ || .+.++.+...
T Consensus 490 ~~~~~~~~~~~ir~~~dN-PG-~W~~HCHi~~ 519 (538)
T TIGR03390 490 VVPGAPAGWRAWRIRVTN-PG-VWMMHCHILQ 519 (538)
T ss_pred ccccCCCceEEEEEEcCC-Ce-eEEEeccchh
Confidence 6777888888885 57 6777777654
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.52 E-value=4.7e-06 Score=89.18 Aligned_cols=234 Identities=10% Similarity=0.033 Sum_probs=132.8
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCCCc-eeeEEeeCc
Q 012225 61 AVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKDQI-GSFFYFPSL 133 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~~~-Gt~wyH~H~ 133 (468)
.++.+++|+++++|+.|... ....+++.|..+.. ...||.+. ....|.|||+++..+++.+.+ +.||.+.-.
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 37999999999999999975 45667777776543 56899864 234599999999999995445 489998643
Q ss_pred cccc---cCCeeecEEEecCCCCCCCC------CCCCC-----cEEE-EEeeee-ecchHHH-HHH--hhcCCCCCCCce
Q 012225 134 NLQR---VSGGFGPVIINNRKVIPIPF------DQPEG-----DIIF-LIGDWY-TRNHTAL-RTA--LDSGKDLDMPDG 194 (468)
Q Consensus 134 ~~q~---~~Gl~G~liV~~~~~~~~~~------~~~~~-----e~~l-~l~d~~-~~~~~~~-~~~--~~~g~~~~~~~~ 194 (468)
..+. ..++ +.|-.+.......+. +..+. .... .+.... .+..... ... +...........
T Consensus 305 ~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 383 (574)
T PLN02191 305 RGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYTK 383 (574)
T ss_pred cccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCeEE
Confidence 2211 1222 222222221110010 00000 0000 000000 0000000 000 000000001125
Q ss_pred EEEcCcCCCCCCCc-----c-----------C------------C-----CCCcceEEEEcCCCEEEEEEEEcC-----C
Q 012225 195 VLINGKGPYRYNTT-----L-----------V------------P-----DGIEYETINVDPGKTYRVRVHNVG-----T 236 (468)
Q Consensus 195 ~liNG~~~~~~~~~-----~-----------~------------~-----~~~~~~~~~v~~G~~~rlRliN~~-----~ 236 (468)
+.+||..+..-... . . . ......++.++.|+.+.+=|.|.. .
T Consensus 384 ~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~ 463 (574)
T PLN02191 384 WAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVV 463 (574)
T ss_pred EEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCC
Confidence 67888764311000 0 0 0 001123567888999999998875 2
Q ss_pred CCeeeEEEeCCeeEEEEeeC-c-----------cccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEeccc
Q 012225 237 STSLNFRIQNHNLLLVETEG-H-----------YTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFV 298 (468)
Q Consensus 237 ~~~~~~~i~gh~~~Via~DG-~-----------~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~ 298 (468)
...|.||+|||+|.|++..- . +..|...|++.+.++.-.-+.+++++ || -+.++.+....
T Consensus 464 ~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG-~Wl~HCHi~~H 535 (574)
T PLN02191 464 SEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PG-VWFFHCHIEPH 535 (574)
T ss_pred CCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CE-EEEEecCchhh
Confidence 45799999999999997542 2 22377789999999999989999985 67 56677776543
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.45 E-value=1.5e-06 Score=75.52 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=69.8
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccc-----------cceeeceEEEcCCceEEEEEEecCC
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT-----------SQQNYTSFEIHVGQSYSFLVTMDQN 284 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~-----------~p~~~d~i~l~pGqR~dv~v~~~~~ 284 (468)
...+.++.|+.++|+|+|.+.. .|.||+|||.|.|++.++... .|...|++.+.+|++..+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 4789999999999999998887 799999999999999999874 46779999999999999999998 5
Q ss_pred CCcceEEEEEec
Q 012225 285 ASSDYYIVASAR 296 (468)
Q Consensus 285 ~g~~y~i~~~~~ 296 (468)
+| .|-+..+..
T Consensus 111 ~G-~w~~HCHi~ 121 (138)
T PF07731_consen 111 PG-PWLFHCHIL 121 (138)
T ss_dssp TE-EEEEEESSH
T ss_pred ce-EEEEEEchH
Confidence 78 788887754
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.45 E-value=8.5e-07 Score=72.54 Aligned_cols=82 Identities=9% Similarity=0.123 Sum_probs=57.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCC-CCCCCCC-CCCCcCCCCceEEEEEeCCCceeeEEeeCccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNS-WQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQR 137 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~-~~DGv~~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~ 137 (468)
...|++++||+| +++|....++++.++........ ...+... +...+.||+++++.|.. +|+|.|||- .+.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 468999999986 56688777888777643211000 0001011 23347899999998874 999999997 677
Q ss_pred cCCeeecEEEe
Q 012225 138 VSGGFGPVIIN 148 (468)
Q Consensus 138 ~~Gl~G~liV~ 148 (468)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 88999999985
No 41
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.42 E-value=3.5e-05 Score=82.24 Aligned_cols=230 Identities=14% Similarity=0.140 Sum_probs=131.5
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-----CCCCcCCCCceEEEEEeCCCce-eeEEeeCc
Q 012225 61 AVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-----TNCPIPSQWNWTYQFQVKDQIG-SFFYFPSL 133 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~y~f~~~~~~G-t~wyH~H~ 133 (468)
++|.|++|+++++|+.|... ....++.-|..+.. ...||.+. ....|.|||+++.-.++.+.+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtV-Ia~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLL-VEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEE-EEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 58999999999999999975 45567777776543 56899753 2345999999999999954455 89986432
Q ss_pred c------ccccCCeeecEEEecCCC---CCCCC-CCCCCcEEE------EEe-----eeeecch--------HHHHHHh-
Q 012225 134 N------LQRVSGGFGPVIINNRKV---IPIPF-DQPEGDIIF------LIG-----DWYTRNH--------TALRTAL- 183 (468)
Q Consensus 134 ~------~q~~~Gl~G~liV~~~~~---~~~~~-~~~~~e~~l------~l~-----d~~~~~~--------~~~~~~~- 183 (468)
. .+...|. +.|-.+.... .+.|. +....+... .+. ....... ..+....
T Consensus 296 ~~~~~~~~~~~~~~-AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 374 (596)
T PLN00044 296 RFVDAAVVDKLTGV-AILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYL 374 (596)
T ss_pred ccccCccccCccee-EEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeee
Confidence 1 1323332 2222222111 01111 000001100 000 0000000 0000000
Q ss_pred hcCC-CCCC--CceEEEcCcCCCCCCCc-c-------C-------CC-------CCcceEEEEcCCCEEEEEEEEcCCCC
Q 012225 184 DSGK-DLDM--PDGVLINGKGPYRYNTT-L-------V-------PD-------GIEYETINVDPGKTYRVRVHNVGTST 238 (468)
Q Consensus 184 ~~g~-~~~~--~~~~liNG~~~~~~~~~-~-------~-------~~-------~~~~~~~~v~~G~~~rlRliN~~~~~ 238 (468)
..+. ...+ .-.+.|||..+..-... + . +. .....++.++.|+.|-+-|-|... .
T Consensus 375 ~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~-~ 453 (596)
T PLN00044 375 LQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNAT-N 453 (596)
T ss_pred eccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCC-C
Confidence 0000 0000 12467788775421100 0 0 00 002345678889999998888653 3
Q ss_pred eeeEEEeCCeeEEEEeeC-----------ccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 239 SLNFRIQNHNLLLVETEG-----------HYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 239 ~~~~~i~gh~~~Via~DG-----------~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
.|.+|+|||+|.||+... +++.|...|++.+.+|.-.-+.+++|+ || -+.|+.+.
T Consensus 454 ~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDN-PG-~W~lHCH~ 519 (596)
T PLN00044 454 VQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDN-AG-IWNLRVEN 519 (596)
T ss_pred CCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCC-CE-EehhhccC
Confidence 799999999999996643 234588889999999999999999995 57 67777773
No 42
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.26 E-value=1.9e-06 Score=85.24 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=76.9
Q ss_pred EEEEEcCcCC--CceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCC-CC------CCcCCCCceEEEEE
Q 012225 50 QVIAINGKFP--GAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TN------CPIPSQWNWTYQFQ 119 (468)
Q Consensus 50 ~~~~~Ng~~P--gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq------~~I~PG~~~~y~f~ 119 (468)
..+++||+.- .|.+.+++|+++++++.|... ....+|.+|.+... -..||.+. .+ ..|.||++++..++
T Consensus 189 ~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~-v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~ 267 (311)
T TIGR02376 189 THVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDY-VWVTGKFANPPNRDVETWFIPGGSAAAALYT 267 (311)
T ss_pred CEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceE-EEECCcccCCCCCCcceEEECCCceEEEEEE
Confidence 5789999931 357899999999999999976 66789999986542 34588754 22 35899999999999
Q ss_pred eCCCceeeEEeeCccccc-cCCeeecEEEecC
Q 012225 120 VKDQIGSFFYFPSLNLQR-VSGGFGPVIINNR 150 (468)
Q Consensus 120 ~~~~~Gt~wyH~H~~~q~-~~Gl~G~liV~~~ 150 (468)
++ ++|.||.|||.-.+. ..|+.|.|-++..
T Consensus 268 ~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 268 FE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred eC-CCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 95 699999999965443 5688888877653
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.24 E-value=2.2e-06 Score=70.07 Aligned_cols=77 Identities=12% Similarity=0.268 Sum_probs=54.6
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC------C-CCCCcCCCCceEEEEEeCCCceeeEEeeC
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ------G-TNCPIPSQWNWTYQFQVKDQIGSFFYFPS 132 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~------~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H 132 (468)
-+.|++++||+| ++.|....+|++.+=-- ....|.. . ....+.||+++++.|+ ++|+|.|+|-
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 479999999985 56776666777665221 1111110 0 1224789999999998 5999999998
Q ss_pred ccccccCCeeecEEEe
Q 012225 133 LNLQRVSGGFGPVIIN 148 (468)
Q Consensus 133 ~~~q~~~Gl~G~liV~ 148 (468)
- |...||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 4 7888999999996
No 44
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=1.2e-05 Score=84.63 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=68.2
Q ss_pred EECCCCceE--EEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEE
Q 012225 41 TASPLGVPQ--QVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQ 117 (468)
Q Consensus 41 ~~~~dG~~~--~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~ 117 (468)
.+..+|... ++....=.|--+.|+|++||+|+++|+|... +..+ ||+..... | -..-+.||++.+..
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----n---I~~dv~PG~t~svt 602 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----G---VNMEVAPQATASVT 602 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----C---ccEEEcCCceEEEE
Confidence 355677554 4455555665568999999999999999643 1211 55543211 1 12347899999999
Q ss_pred EEeCCCceeeEEeeCc---cccccCCeeecEEEecC
Q 012225 118 FQVKDQIGSFFYFPSL---NLQRVSGGFGPVIINNR 150 (468)
Q Consensus 118 f~~~~~~Gt~wyH~H~---~~q~~~Gl~G~liV~~~ 150 (468)
|++ +++|+|||||.. ..| .+|.|-|+|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 999 689999999984 233 379999999874
No 45
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.00075 Score=71.56 Aligned_cols=264 Identities=13% Similarity=0.093 Sum_probs=146.4
Q ss_pred ccEEEEEEEEEEEEC-----------CCCc-e--EEEEEEcCcCC--C---ceEEEecCCEEEEEEEeCCC-CCceeecC
Q 012225 29 DTIFYDFKVSYITAS-----------PLGV-P--QQVIAINGKFP--G---AVLNATTNNNIVINVQNDLD-ESLLMTWP 88 (468)
Q Consensus 29 ~~~~~~l~~~~~~~~-----------~dG~-~--~~~~~~Ng~~P--g---P~i~~~~Gd~v~v~v~N~l~-~~~siH~H 88 (468)
+.+|+.|.+++=.-+ ..|. . -...++||+-+ + +++.+++|++.++|+.|..- .......-
T Consensus 158 pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~ 237 (563)
T KOG1263|consen 158 PDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIA 237 (563)
T ss_pred CCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEEC
Confidence 557888888763321 1111 2 36799999852 1 68999999999999999853 33223333
Q ss_pred cccCCCCCCCCCC---CC--CCCCcCCCCceEEEEEeCCCceeeEEeeCcccccc---CCeeecEEEecCCC-CCCCCCC
Q 012225 89 GIQMRRNSWQDGV---QG--TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRV---SGGFGPVIINNRKV-IPIPFDQ 159 (468)
Q Consensus 89 G~~~~~~~~~DGv---~~--tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~---~Gl~G~liV~~~~~-~~~~~~~ 159 (468)
|..... -..||. |. ....|.|||++++-.++.+.++.||+-.....+.. .=+.+..+++-... .+...
T Consensus 238 ~H~ltv-Ve~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~-- 314 (563)
T KOG1263|consen 238 NHQLTV-VEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASE-- 314 (563)
T ss_pred CeEEEE-EEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcc--
Confidence 333332 457887 32 23558999999999999666889999766433321 11233333332221 00000
Q ss_pred CCCcEEEEEee-----eeecchHHHHHHhhcCCCC---------------------------CCCceEEEcCcCCCCCCC
Q 012225 160 PEGDIIFLIGD-----WYTRNHTALRTALDSGKDL---------------------------DMPDGVLINGKGPYRYNT 207 (468)
Q Consensus 160 ~~~e~~l~l~d-----~~~~~~~~~~~~~~~g~~~---------------------------~~~~~~liNG~~~~~~~~ 207 (468)
..-.+..+.. |..+....+....+..... ..-..+.||+.++.....
T Consensus 315 -~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~t 393 (563)
T KOG1263|consen 315 -KLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKT 393 (563)
T ss_pred -cCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCC
Confidence 0000000000 0000000000000000000 001234444444221110
Q ss_pred ------------------ccC-C------C--CCcceEEEEcCCCEEEEEEEEcCCC--CeeeEEEeCCeeEEEEe-eCc
Q 012225 208 ------------------TLV-P------D--GIEYETINVDPGKTYRVRVHNVGTS--TSLNFRIQNHNLLLVET-EGH 257 (468)
Q Consensus 208 ------------------~~~-~------~--~~~~~~~~v~~G~~~rlRliN~~~~--~~~~~~i~gh~~~Via~-DG~ 257 (468)
... + + ......++++-+..+-+=+-|.+.. ..|.+|+|||.|.||+. +|+
T Consensus 394 p~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~ 473 (563)
T KOG1263|consen 394 PSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGN 473 (563)
T ss_pred chhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccc
Confidence 000 0 0 1112457888888888888887754 45677999999999999 333
Q ss_pred c------------ccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEeccc
Q 012225 258 Y------------TSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFV 298 (468)
Q Consensus 258 ~------------~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~~~ 298 (468)
+ ..|+..++|.+.||.-.-+.+.+++ || -+-|+.+....
T Consensus 474 ~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adN-PG-~W~~HCHie~H 524 (563)
T KOG1263|consen 474 WDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADN-PG-VWLMHCHIEDH 524 (563)
T ss_pred cCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCC-Cc-EEEEEEecHHH
Confidence 2 2255678999999999999999995 67 56678776543
No 46
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.99 E-value=7.6e-05 Score=67.28 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=74.0
Q ss_pred EEEEEcCcCCC-ceEEEecCCEEEEEEEeCCCCCceeecC--cccC--CCCCCCCCC----CC------CCCCcCCCCce
Q 012225 50 QVIAINGKFPG-AVLNATTNNNIVINVQNDLDESLLMTWP--GIQM--RRNSWQDGV----QG------TNCPIPSQWNW 114 (468)
Q Consensus 50 ~~~~~Ng~~Pg-P~i~~~~Gd~v~v~v~N~l~~~~siH~H--G~~~--~~~~~~DGv----~~------tq~~I~PG~~~ 114 (468)
..+-|||..-| ++|.+..|-+|.|+++|....+|++-.= +..+ ......||. ++ +...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 35678887665 8999999999999999987655543221 1110 112345553 12 12358899999
Q ss_pred EEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCC
Q 012225 115 TYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKV 152 (468)
Q Consensus 115 ~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 152 (468)
.-.|... ++|.||+=|-...|...||++-|||...-.
T Consensus 154 ~~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEccC-CCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 8777653 699999999999999999999999997553
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.95 E-value=4.5e-05 Score=60.16 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=51.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCC-CCCCcCCCCceEEEEEeCCCceeeEEeeCcccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~ 138 (468)
.+.|++++||+| +++|....+|++++..-. ++... ....+.||+++++.|+ ++|+|-|||-..-
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCC-------CccccccccccCCCCEEEEECC---CCEEEEEEcCCCC---
Confidence 478999999997 468987788888875431 11001 1123578888887764 5999999996422
Q ss_pred CCeeecEEEe
Q 012225 139 SGGFGPVIIN 148 (468)
Q Consensus 139 ~Gl~G~liV~ 148 (468)
+|.|.|+|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 499999985
No 48
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.87 E-value=0.00025 Score=62.60 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=72.6
Q ss_pred EEEEcCcCCC-ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCC-------CCCCCCC----CCC------CCcCCCC
Q 012225 51 VIAINGKFPG-AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRN-------SWQDGVQ----GTN------CPIPSQW 112 (468)
Q Consensus 51 ~~~~Ng~~Pg-P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~-------~~~DGv~----~tq------~~I~PG~ 112 (468)
.+-+||+..| |+|.+..|=+|.|+++|....+|++-. -+..+ ...||.. |.+ ..|.+|+
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3667888776 899999999999999999877766544 12221 2346652 322 2366888
Q ss_pred ceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecCCC
Q 012225 113 NWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKV 152 (468)
Q Consensus 113 ~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 152 (468)
+..=.|+. -++|+|||-|-...|..+||+|-+||...-.
T Consensus 151 s~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 151 SRSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eeEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 86666665 4899999999999999999999999997543
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.83 E-value=4.1e-05 Score=68.30 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=65.8
Q ss_pred EEEEEEcCc------------CCCceEEEecCCEEEEEEEeCCCC-CceeecCcccCCCCCCCCCCCC-----CCCCcCC
Q 012225 49 QQVIAINGK------------FPGAVLNATTNNNIVINVQNDLDE-SLLMTWPGIQMRRNSWQDGVQG-----TNCPIPS 110 (468)
Q Consensus 49 ~~~~~~Ng~------------~PgP~i~~~~Gd~v~v~v~N~l~~-~~siH~HG~~~~~~~~~DGv~~-----tq~~I~P 110 (468)
-..+++||+ -.-|+|.+++|+++++||.|.... ...+++.|..... ...||.+. ....|.|
T Consensus 36 ~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~V-ia~DG~~v~p~~~~~l~l~~ 114 (159)
T PF00394_consen 36 PDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTV-IAADGVPVEPYKVDTLVLAP 114 (159)
T ss_dssp CSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEE-EEETTEEEEEEEESBEEE-T
T ss_pred CcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeE-eeeccccccccccceEEeeC
Confidence 457899993 224899999999999999999864 6689999986553 46799863 3456999
Q ss_pred CCceEEEEEeCCCceeeEEeeC
Q 012225 111 QWNWTYQFQVKDQIGSFFYFPS 132 (468)
Q Consensus 111 G~~~~y~f~~~~~~Gt~wyH~H 132 (468)
||+++..+++++.+|.||.++.
T Consensus 115 G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 115 GQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TEEEEEEEEECSCSSEEEEEEE
T ss_pred CeEEEEEEEeCCCCCeEEEEEe
Confidence 9999999999534999999993
No 50
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.62 E-value=0.00031 Score=58.83 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=50.5
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeec-CcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCcccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTW-PGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~ 138 (468)
...|++++||+|+....|. ++++.+ .+.. -+|.. ...-.+|+++++.|+ ++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~--~~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAE--AFKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCcc--cccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 3689999999977666654 455554 2211 12211 111235666666663 6999999997 6777
Q ss_pred CCeeecEEEecCC
Q 012225 139 SGGFGPVIINNRK 151 (468)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (468)
.||.|.|+|.+++
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999998853
No 51
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.48 E-value=0.00011 Score=61.89 Aligned_cols=86 Identities=23% Similarity=0.223 Sum_probs=66.7
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEE-EeeCccccceeeceEEEcC
Q 012225 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV-ETEGHYTSQQNYTSFEIHV 271 (468)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Vi-a~DG~~~~p~~~d~i~l~p 271 (468)
..+++||+.. .|+|++++|+++++++.|.... ...+|+||....-- ..||..-. ..-.|.|
T Consensus 15 ~~~~~ng~~p-------------GPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~----~~~~i~p 76 (117)
T PF07732_consen 15 KVWTYNGQFP-------------GPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGV----TQCPIAP 76 (117)
T ss_dssp EEEEETTBSS-------------EEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTT----SGSSBST
T ss_pred EEEEECCCCC-------------CCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCcccc----cceeEEe
Confidence 5789999975 4999999999999999999855 68899998643210 14664421 2245899
Q ss_pred CceEEEEEEecCCCCcceEEEEEecc
Q 012225 272 GQSYSFLVTMDQNASSDYYIVASARF 297 (468)
Q Consensus 272 GqR~dv~v~~~~~~g~~y~i~~~~~~ 297 (468)
|+++...+++++.+| .||.+.+...
T Consensus 77 G~~~~Y~~~~~~~~G-t~wYH~H~~~ 101 (117)
T PF07732_consen 77 GESFTYEFTANQQAG-TYWYHSHVHG 101 (117)
T ss_dssp TEEEEEEEEESSCSE-EEEEEECSTT
T ss_pred ecceeeeEeeecccc-ceeEeeCCCc
Confidence 999999999998678 9999887654
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.47 E-value=0.00062 Score=57.70 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=54.4
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCC
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSG 140 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~G 140 (468)
-.|++++||+ |++.|.....|+++.-+... -+|. ......+|+++++.|. .+|+|-|+|- -|..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~-----~~g~--~~~~~~~~~s~~~Tfe---~~G~Y~Y~C~--PH~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD-----PEGS--GTLKAGINESFTHTFE---TPGEYTYYCT--PHPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC-----cccc--cccccCCCcceEEEec---ccceEEEEec--cCCCCC
Confidence 4999999999 67889888888888655521 1221 1233455677777776 4999999985 355689
Q ss_pred eeecEEEec
Q 012225 141 GFGPVIINN 149 (468)
Q Consensus 141 l~G~liV~~ 149 (468)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.27 E-value=0.0013 Score=55.00 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.4
Q ss_pred CceEEEecCCEEEEEEEeCC-CCCceeecCcccCCCCCCCCCCCC-CCCCcCCCCceEEEEEeCCCceeeEEeeCccccc
Q 012225 60 GAVLNATTNNNIVINVQNDL-DESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQR 137 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~ 137 (468)
...|++++||+|+ ++|.. ..+|++..-+ ++... ......||++|+|.|. ++|+|-|+|- .|.
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~---------~~~f~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG---------DGDLDESERVSEEGTTYEHTFE---EPGIYLYVCV--PHE 104 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECC---------CCCccccccccCCCCEEEEEec---CCcEEEEEcc--CCC
Confidence 4689999999965 77543 4667765311 01111 1123578999999995 5999999996 445
Q ss_pred cCCeeecEEEe
Q 012225 138 VSGGFGPVIIN 148 (468)
Q Consensus 138 ~~Gl~G~liV~ 148 (468)
.+||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 57999999984
No 54
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.14 E-value=0.026 Score=49.54 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCCceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCe--eEEE-EeeCccccceeece
Q 012225 190 DMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHN--LLLV-ETEGHYTSQQNYTS 266 (468)
Q Consensus 190 ~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~Vi-a~DG~~~~p~~~d~ 266 (468)
.....|.+||... |.|++++|+++++++.|......|.|.|+.+. +... ..||.... .+.
T Consensus 39 ~~~~~f~~~~~~~--------------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~---~~~ 101 (148)
T TIGR03095 39 PSMYSFEIHDLKN--------------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFV---AGT 101 (148)
T ss_pred CCceeEEecCCCC--------------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcc---ccC
Confidence 3456899999875 99999999999999999976445666666442 2111 34553311 111
Q ss_pred EEEc---CCce--EEEEEEecCCCCcceEEEEE
Q 012225 267 FEIH---VGQS--YSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 267 i~l~---pGqR--~dv~v~~~~~~g~~y~i~~~ 294 (468)
-.+. +|+. .++.++++ .+| .||...+
T Consensus 102 ~i~p~~~~g~~~~~~~tf~f~-~aG-tywyhC~ 132 (148)
T TIGR03095 102 GFLPPPKSGKFGYTDFTYHFS-TAG-TYWYLCT 132 (148)
T ss_pred cccCCCCCCccceeEEEEECC-CCe-EEEEEcC
Confidence 1112 2444 58888888 468 9999865
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.05 E-value=0.03 Score=47.92 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=49.1
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
+..|+|++|++++|++.|.... .+.+.++++. -...|.||++..+.+++++ +| .|+....
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG-~Y~y~C~ 119 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AG-AFTIWCQ 119 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCC-CE-EEEEeCC
Confidence 4789999999999999998885 5777777652 1467899999999999994 67 8998653
No 56
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.071 Score=46.32 Aligned_cols=89 Identities=8% Similarity=0.071 Sum_probs=66.3
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCC--cee--------e-cCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCce
Q 012225 57 KFPGAVLNATTNNNIVINVQNDLDES--LLM--------T-WPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIG 125 (468)
Q Consensus 57 ~~PgP~i~~~~Gd~v~v~v~N~l~~~--~si--------H-~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~G 125 (468)
.|++-.+.++.|++++..+.|...-- .++ | -|... .+.+++-.....-+.||++-...|..+ ++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~---~~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMIL---ADDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhh---CCccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 35777899999999999999986421 111 1 12222 234554333335589999999999995 799
Q ss_pred eeEEeeCccccccCCeeecEEEec
Q 012225 126 SFFYFPSLNLQRVSGGFGPVIINN 149 (468)
Q Consensus 126 t~wyH~H~~~q~~~Gl~G~liV~~ 149 (468)
.|=+-|-..+++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 57
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.83 E-value=0.093 Score=52.92 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=53.8
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC--CCCCCcCCCCceEEEEEeCCCceeeEEeeCcc
Q 012225 57 KFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ--GTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLN 134 (468)
Q Consensus 57 ~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~--~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~ 134 (468)
.+--..+.++.|+ +.+.|+|....++..-. .+|+- +...-|.||.+..+.+++ .+|+|-|+| +
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C--~ 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTC--G 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeec--C
Confidence 3444689999996 89999999876633211 12221 122468999999998877 499999999 3
Q ss_pred ccccCCeeecEEEecCC
Q 012225 135 LQRVSGGFGPVIINNRK 151 (468)
Q Consensus 135 ~q~~~Gl~G~liV~~~~ 151 (468)
.+ ..+.|.|+|....
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 32 3358999998643
No 58
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=95.29 E-value=0.09 Score=44.41 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=50.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCcc-cccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLN-LQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~ 138 (468)
.+.|.+..|++|++.+++. +.-|+....++.. +.-+-||+.....|++ +++|+|++.|..- ...-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4689999999999999995 5554544443321 2336799999999999 6899999999831 1111
Q ss_pred CCeeecEEE
Q 012225 139 SGGFGPVII 147 (468)
Q Consensus 139 ~Gl~G~liV 147 (468)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 236666655
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.09 E-value=0.094 Score=42.99 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=42.0
Q ss_pred cceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 215 EYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 215 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
.+..+++++|++++|.+.|.+... |.|.+++. .-...|.||+...+.+.++ .+| .|.+...
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G-~y~~~C~ 93 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPL-KPG-EYEFYCT 93 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-E-EEEEB-S
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCE-EEEEEcC
Confidence 357899999999999999998874 77777761 1237789999999999766 568 8888553
No 60
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=95.05 E-value=0.35 Score=44.82 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-ccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~ 138 (468)
...|.+..|+.|++++++.. .- ||..... .. -+.-+-||..-+..|++ +++|+|...|.. -+..-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D-V~-----Hsf~ip~---~~----~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD-VI-----HSFWVPE---LG----GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc-hh-----hcccccc---cC----ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 35899999999999999853 22 5554321 11 13345789999999998 689999999983 11222
Q ss_pred CCeeecEEEecCC
Q 012225 139 SGGFGPVIINNRK 151 (468)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (468)
..|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 4588999988753
No 61
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.89 E-value=0.13 Score=43.20 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred ceEEEec-CCEEEEEEEeCCCCCceeecC--------------------cccCCCCCCCCCCCC-CCCCcCCCCceEEEE
Q 012225 61 AVLNATT-NNNIVINVQNDLDESLLMTWP--------------------GIQMRRNSWQDGVQG-TNCPIPSQWNWTYQF 118 (468)
Q Consensus 61 P~i~~~~-Gd~v~v~v~N~l~~~~siH~H--------------------G~~~~~~~~~DGv~~-tq~~I~PG~~~~y~f 118 (468)
..|.|.. |.+|.|+|+|....+...=-| |+...--+..|-.-. ...-|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5889998 478999999985433211112 111110111121111 334589999999999
Q ss_pred EeCC-Ccee-eEEeeCccccccCCeeecEE
Q 012225 119 QVKD-QIGS-FFYFPSLNLQRVSGGFGPVI 146 (468)
Q Consensus 119 ~~~~-~~Gt-~wyH~H~~~q~~~Gl~G~li 146 (468)
+++. ++|+ |-|-|-.-.|.. .|.|.|.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9862 5786 999999877775 5888775
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.74 E-value=0.46 Score=43.19 Aligned_cols=87 Identities=26% Similarity=0.255 Sum_probs=58.1
Q ss_pred ceEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCC-----eeEEEEeeCcccc-----ce
Q 012225 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNH-----NLLLVETEGHYTS-----QQ 262 (468)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~Via~DG~~~~-----p~ 262 (468)
+.+-+||... ....|-+++|-++.++++|.+.. .|.|-+-.- ....+..||..+. +.
T Consensus 74 ~~~nfnGts~------------G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~ 140 (196)
T PF06525_consen 74 NPFNFNGTSN------------GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPG 140 (196)
T ss_pred CceeeecccC------------CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCC
Confidence 3677888775 24889999999999999998876 455555311 2345666775542 11
Q ss_pred eeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 263 NYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 263 ~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
....--|.+||++...+..- ++| .||+...
T Consensus 141 ~~~~~GI~~G~s~~~~~~~l-~aG-~YwlvC~ 170 (196)
T PF06525_consen 141 NYTSNGISSGQSASGVYNDL-PAG-YYWLVCG 170 (196)
T ss_pred ccccCCccCCceeeEEEccC-CCc-eEEEEcc
Confidence 11123467999999877543 578 9999753
No 63
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=91.59 E-value=1.8 Score=42.94 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.3
Q ss_pred CCCC-CCCCcCCCCceEEEEEeCC
Q 012225 100 GVQG-TNCPIPSQWNWTYQFQVKD 122 (468)
Q Consensus 100 Gv~~-tq~~I~PG~~~~y~f~~~~ 122 (468)
|-.. .+.||+|||+.+.+.++.|
T Consensus 331 GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 331 GLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred cceeCCCCCcCCCcceEEEEEEeh
Confidence 5444 4578999999999999853
No 64
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=91.55 E-value=0.56 Score=38.02 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=42.0
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccc-ceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTS-QQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~-p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
+..|++++|++++|. |.+.. .|.+.++.-.+..-+. ... ....+.+.+.||+++++-++. +| .|.....
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pG~t~~~tF~~---~G-~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVPAGVK---ELAKSLSHKDLLNSPGESYEVTFST---PG-TYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEECCCCCccchh---hhcccccccccccCCCCEEEEEeCC---CE-EEEEEcC
Confidence 477999999997665 87654 4666655332111000 001 111256789999999996643 67 8888653
No 65
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=91.27 E-value=1.7 Score=41.46 Aligned_cols=78 Identities=9% Similarity=-0.076 Sum_probs=59.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-ccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~ 138 (468)
...|.+..|.+|++.++-. +.-++....++. -+.-+-||...+..+++ +++|+|.-+|+. .+..-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 4899999999999999877 554444444442 13346789999999998 689999999983 34444
Q ss_pred CCeeecEEEecCC
Q 012225 139 SGGFGPVIINNRK 151 (468)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (468)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 5699999999865
No 66
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=89.94 E-value=1.5 Score=43.57 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred ceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCce--------eecCcccCCCC--C------CCCCCCC-CCCCcC
Q 012225 47 VPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLL--------MTWPGIQMRRN--S------WQDGVQG-TNCPIP 109 (468)
Q Consensus 47 ~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~s--------iH~HG~~~~~~--~------~~DGv~~-tq~~I~ 109 (468)
+..++...|=++||-++++ .++|+|+.+++.. ++|=.-..... . ..+|... ...||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 4445555555678877764 4788888776543 33322221110 0 0112222 346899
Q ss_pred CCCceEEEEEeCC
Q 012225 110 SQWNWTYQFQVKD 122 (468)
Q Consensus 110 PG~~~~y~f~~~~ 122 (468)
|||+.+.+.++.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999953
No 67
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=88.70 E-value=0.49 Score=48.04 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCcc-ccccC
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLN-LQRVS 139 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~~ 139 (468)
-++.|++||.|++.++|-....-.+| |.-.. +-|+ ...+.|-++-.|.|.+ +.+|.+||.|-.. ..+-+
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 47788888888888888755444443 32111 1111 1347888999999999 6899999997522 22223
Q ss_pred CeeecEEEec
Q 012225 140 GGFGPVIINN 149 (468)
Q Consensus 140 Gl~G~liV~~ 149 (468)
-|.|-++|++
T Consensus 628 em~~rmlve~ 637 (637)
T COG4263 628 EMAGRMLVEA 637 (637)
T ss_pred hhccceeecC
Confidence 3677777763
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=86.16 E-value=6.6 Score=33.07 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=45.8
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
...+.++.|++++|++-+... .|.|.+.+..+. +.+-||+.-.+-++++ .+| .|+++..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G-~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPG-TYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSE-EEEEEE-S
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCC-cEEEcCcc
Confidence 367999999999999999555 588888876544 3456788888888887 467 89998754
No 69
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=84.76 E-value=4.1 Score=35.65 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=51.6
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEe--C----CeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcce
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQ--N----HNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDY 289 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~--g----h~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y 289 (468)
+..+.++.|+++|+-+-|.+.. .|.|.++ + |.-..+.+| -.+-.....+.|.||+...+.+++.+ +| .|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g-~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AG-KY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-Cc-cE
Confidence 4668999999999999998887 4666665 1 111112222 11112245899999999999999995 46 79
Q ss_pred EEEEEe
Q 012225 290 YIVASA 295 (468)
Q Consensus 290 ~i~~~~ 295 (468)
.+....
T Consensus 137 e~~C~i 142 (158)
T COG4454 137 EFACNI 142 (158)
T ss_pred EEEecC
Confidence 887643
No 70
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.56 E-value=4.3 Score=43.74 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=46.1
Q ss_pred cceEEEEcCCCEEEEEEEEcCC--CCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEE
Q 012225 215 EYETINVDPGKTYRVRVHNVGT--STSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIV 292 (468)
Q Consensus 215 ~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~ 292 (468)
.+..|+|+.|+.|+|+|-|.-. .-.|.|.|.++... +.+.||+...+-+++++ +| .||+.
T Consensus 553 ~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------~dv~PG~t~svtF~adk-PG-vy~~~ 614 (635)
T PRK02888 553 GLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------MEVAPQATASVTFTADK-PG-VYWYY 614 (635)
T ss_pred CCceEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------EEEcCCceEEEEEEcCC-CE-EEEEE
Confidence 3466888888888888888633 34566666665432 46779999999999995 67 89987
Q ss_pred EEe
Q 012225 293 ASA 295 (468)
Q Consensus 293 ~~~ 295 (468)
..-
T Consensus 615 Cte 617 (635)
T PRK02888 615 CTW 617 (635)
T ss_pred CCc
Confidence 643
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=81.29 E-value=14 Score=28.80 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=36.2
Q ss_pred EEEEEEEcCCCCeeeEEEe-CCeeEEE--EeeCccccc--------eeeceEEEcCCceEEEEEEecCC---CCcceEEE
Q 012225 227 YRVRVHNVGTSTSLNFRIQ-NHNLLLV--ETEGHYTSQ--------QNYTSFEIHVGQSYSFLVTMDQN---ASSDYYIV 292 (468)
Q Consensus 227 ~rlRliN~~~~~~~~~~i~-gh~~~Vi--a~DG~~~~p--------~~~d~i~l~pGqR~dv~v~~~~~---~g~~y~i~ 292 (468)
..|++.|.+.. ...|.+. |+.+.++ ..+|..+-. +......|.|||...+-.+.+.. +| .|.+.
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G-~Y~~~ 81 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPG-EYTLE 81 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SE-EEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCc-eEEEe
Confidence 56778887776 4666665 5654444 446655421 22457889999999999888765 46 88875
Q ss_pred E
Q 012225 293 A 293 (468)
Q Consensus 293 ~ 293 (468)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 72
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.36 E-value=0.82 Score=36.80 Aligned_cols=24 Identities=38% Similarity=0.193 Sum_probs=11.3
Q ss_pred CchhhHhHHHHHHHHHHHHhhhhccc
Q 012225 1 MASLRFLSLFLVLPIHIALFSSLCFA 26 (468)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a 26 (468)
|.| ++||||.+++.++||+++..+
T Consensus 1 MaS--K~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MAS--KAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cch--hHHHHHHHHHHHHHHHHhhhh
Confidence 553 334444445445555444433
No 73
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=78.84 E-value=59 Score=30.65 Aligned_cols=77 Identities=13% Similarity=-0.115 Sum_probs=50.4
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-ccccc
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~ 138 (468)
...+.+..|..|++.+++. +.- |+...+ .-| -+.-+-||..-...|++ +++|+|+-.|.. -+..-
T Consensus 139 ~n~l~lP~~~~v~~~~ts~-DVi-----Hsf~ip----~~~---~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA-DVI-----HSWTVP----SLG---VKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC-ccc-----cceecc----ccC---ceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 3579999999999999995 332 344322 111 12224689988899998 689999999872 11222
Q ss_pred CCeeecEEEecC
Q 012225 139 SGGFGPVIINNR 150 (468)
Q Consensus 139 ~Gl~G~liV~~~ 150 (468)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 346677777664
No 74
>PRK02710 plastocyanin; Provisional
Probab=77.48 E-value=7.9 Score=32.47 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=38.8
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
+..+++++|++++| +|.+.. .|++.+++. + ......+.+.||+++++.++. +| .|.....
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~-------~-----~~~~~~~~~~pg~t~~~tF~~---~G-~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFDGA-------K-----ELSHKDLAFAPGESWEETFSE---AG-TYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEecCC-------c-----cccccccccCCCCEEEEEecC---CE-EEEEEcC
Confidence 47899999998765 576554 456655432 1 111234668999999877653 57 7877653
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=76.00 E-value=11 Score=29.51 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=33.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCC----CCcCCCCceEEEEEeCCC---ceeeEE
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTN----CPIPSQWNWTYQFQVKDQ---IGSFFY 129 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq----~~I~PG~~~~y~f~~~~~---~Gt~wy 129 (468)
.=+|+..-|++..+.|.|...+. .| -|++|-..+| ..|+||++.+|+++.+.. +|+|..
T Consensus 15 ~v~l~f~sgq~~D~~v~d~~g~~---vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 15 PVTLQFPSGQRYDFVVKDKEGKE---VW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp -EEEEESSS--EEEEEE-TT--E---EE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred eEEEEeCCCCEEEEEEECCCCCE---EE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 34777788888888888664321 12 4677765444 459999999999999732 688853
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=75.15 E-value=26 Score=29.66 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=50.0
Q ss_pred ceEEEEcCC-CEEEEEEEEcCCCC----eeeEEEe-CCeeEEEE-------eeCccccce----eeceEEEcCCceEEEE
Q 012225 216 YETINVDPG-KTYRVRVHNVGTST----SLNFRIQ-NHNLLLVE-------TEGHYTSQQ----NYTSFEIHVGQSYSFL 278 (468)
Q Consensus 216 ~~~~~v~~G-~~~rlRliN~~~~~----~~~~~i~-gh~~~Via-------~DG~~~~p~----~~d~i~l~pGqR~dv~ 278 (468)
...|+|+++ +.+.+.|-|.|... .|++-|- .-.+.-|+ .|-+|+++- ...+=.|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 467999984 88999999998753 2333332 11222222 244556431 2345669999999999
Q ss_pred EEecC-CCCcceEEEEE
Q 012225 279 VTMDQ-NASSDYYIVAS 294 (468)
Q Consensus 279 v~~~~-~~g~~y~i~~~ 294 (468)
++++. .+|++|....+
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99873 34537887653
No 77
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=71.43 E-value=17 Score=29.23 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=40.8
Q ss_pred cceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccc--c----ceeeceEEEcCCceEEEEEEecCCCCcc
Q 012225 215 EYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT--S----QQNYTSFEIHVGQSYSFLVTMDQNASSD 288 (468)
Q Consensus 215 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~--~----p~~~d~i~l~pGqR~dv~v~~~~~~g~~ 288 (468)
.+..|++++|++++ ++|.+.. .|.+.+.. |+... . +.......+.+|+.+++-++ .+| .
T Consensus 15 ~P~~i~V~~G~tV~--~~n~~~~-~Hnv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G-~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTVT--FVNNDSM-PHNVVFVA--------DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPG-T 79 (99)
T ss_dssp ESSEEEEETTEEEE--EEEESSS-SBEEEEET--------TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSE-E
T ss_pred eCCEEEECCCCEEE--EEECCCC-CceEEEec--------ccccccccccccCccccceecCCCCEEEEEeC---CCe-E
Confidence 45789999999865 5676444 24444433 33211 1 11115678999999998876 457 7
Q ss_pred eEEEEE
Q 012225 289 YYIVAS 294 (468)
Q Consensus 289 y~i~~~ 294 (468)
|.....
T Consensus 80 y~y~C~ 85 (99)
T PF00127_consen 80 YEYYCT 85 (99)
T ss_dssp EEEEET
T ss_pred EEEEcC
Confidence 887664
No 78
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.22 E-value=98 Score=28.40 Aligned_cols=76 Identities=14% Similarity=-0.070 Sum_probs=49.9
Q ss_pred eEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-cccccCC
Q 012225 62 VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRVSG 140 (468)
Q Consensus 62 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~~G 140 (468)
.+++..|..|+++++-. +.-|+....++. ..+| +-||..-...|++ +++|+|.--|.. -+..-..
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~----~k~d--------~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLN----LKMD--------AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccC----ceee--------cCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 57888899998888765 333333333321 1123 4589998889987 689999999983 1222234
Q ss_pred eeecEEEecCC
Q 012225 141 GFGPVIINNRK 151 (468)
Q Consensus 141 l~G~liV~~~~ 151 (468)
|.+.+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 77888887654
No 79
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=67.73 E-value=24 Score=28.97 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCccccccCCeeecEEEecC
Q 012225 72 VINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNR 150 (468)
Q Consensus 72 ~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~ 150 (468)
.|+++|.|.....|..|=-. ...| .+ ...+.||+++.++|.. +-.|+--|.|+... ....-..-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S----~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS----KDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC----CCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 58999999766556655541 1122 11 2348999999999987 45677777899766 21223566666543
No 80
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=66.69 E-value=6.7 Score=32.55 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCc---eeecCcccCCC---CCCCCCCCCCCCCcCCCCceEEEEEeC
Q 012225 72 VINVQNDLDESL---LMTWPGIQMRR---NSWQDGVQGTNCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 72 ~v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~y~f~~~ 121 (468)
.|++.|..+.+. +=|||=....+ .-.-+||-|.|.-|+||++|+|.=-++
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~ 88 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCP 88 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcC
Confidence 356666665443 45887543221 122467667888899999999975543
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=64.32 E-value=27 Score=27.42 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=41.2
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEe
Q 012225 60 GAVLNAT---TNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYF 130 (468)
Q Consensus 60 gP~i~~~---~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH 130 (468)
.|.+.++ ....|.|+|.|.......+....... ..+.+ .+..|+||++.+..|... ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4555554 23489999999988877777655311 11111 345689999999999883 4445564
No 82
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=61.45 E-value=13 Score=32.61 Aligned_cols=67 Identities=13% Similarity=0.285 Sum_probs=40.1
Q ss_pred EEEEEEEEEEEECCCCceEEEEEEcCcC-CCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC
Q 012225 31 IFYDFKVSYITASPLGVPQQVIAINGKF-PGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ 102 (468)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~-PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 102 (468)
..|-++.++...... .....+.+.|.+ +|..-+. .|..++++++-. .....++..|. .+..+.+|..
T Consensus 34 ~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 34 IVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred CceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 356666665543322 122334555554 4544333 778888888776 56678999998 4456777754
No 83
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=59.03 E-value=54 Score=33.37 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=43.5
Q ss_pred CcceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEE
Q 012225 214 IEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVA 293 (468)
Q Consensus 214 ~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~ 293 (468)
|.+..+++++|+ ++|.+.|.+... +.|++++ |..+. ...=.|+||.+..+.+.+. +| .|.+..
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L~--pG-tY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEILK--GVMVV---EERENIAPGFSQKMTANLQ--PG-EYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCc--------ceEEeec--ccccc---ccccccCCCCceEEEEecC--Cc-eEEeec
Confidence 456889999996 999999998764 4444442 22110 0123789998888877763 68 899876
No 84
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=58.75 E-value=85 Score=24.44 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEcCCCEE--EEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceE-EEcCCceEEEEEEecC-CCCcceEEEEEe
Q 012225 220 NVDPGKTY--RVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSF-EIHVGQSYSFLVTMDQ-NASSDYYIVASA 295 (468)
Q Consensus 220 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i-~l~pGqR~dv~v~~~~-~~g~~y~i~~~~ 295 (468)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.... .+| .|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEEE
Confidence 56677776 567789888754444433 34466554 33445 7899999888887653 456 88888765
Q ss_pred cc
Q 012225 296 RF 297 (468)
Q Consensus 296 ~~ 297 (468)
+.
T Consensus 84 D~ 85 (101)
T PF07705_consen 84 DP 85 (101)
T ss_dssp ST
T ss_pred ee
Confidence 43
No 85
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=57.58 E-value=59 Score=24.63 Aligned_cols=66 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred EcCCCEE--EEEEEEcCCCC--eeeEEEeC-CeeEEEEeeCccccceeeceEEEcCCceEEEEEEecC----CCCcceEE
Q 012225 221 VDPGKTY--RVRVHNVGTST--SLNFRIQN-HNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQ----NASSDYYI 291 (468)
Q Consensus 221 v~~G~~~--rlRliN~~~~~--~~~~~i~g-h~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~----~~g~~y~i 291 (468)
+.+|+.. .+.+-|.+... ...+++.. ..++ +..+ +.... .|.||+...+-++..- .+| +|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~-----~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSAS-----PASVP--SLPPGESVTVTFTVTVPADAAPG-TYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----E-----EEEE----B-TTSEEEEEEEEEE-TT--SE-EEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCC-----ccccc--cCCCCCEEEEEEEEECCCCCCCc-eEEE
Confidence 3566655 67788987643 23444332 1122 2222 22222 7899987766665542 246 8988
Q ss_pred EEEe
Q 012225 292 VASA 295 (468)
Q Consensus 292 ~~~~ 295 (468)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 86
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=55.03 E-value=33 Score=30.26 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=41.7
Q ss_pred EEEEEEEEEEEECCCCceEEEEEEcCc-CCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC
Q 012225 31 IFYDFKVSYITASPLGVPQQVIAINGK-FPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ 102 (468)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~-~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 102 (468)
..|-++.++......- ....+.+.|. .+|-..|-..+-.|+++++ +......++..|+ .+..+.+|..
T Consensus 34 ~~yF~tpsEv~~~~~~-~~~~~RlGG~V~~GSv~r~~~~~~v~F~vt-D~~~~v~V~Y~Gi--lPDlFrEGqg 102 (155)
T PRK13159 34 MSYLFTPSQVRAGAAA-GYQQFRLGGMVKAGSIQRAADSLKVSFTVI-DKNAATQVEYTGI--LPDLFRDNQS 102 (155)
T ss_pred ceEEECHHHHhcCCcc-cCCeEEEccEEecCcEEEcCCCcEEEEEEE-cCCcEEEEEEccC--CCccccCCCe
Confidence 4777777776543221 2255667776 5676655323336777777 4456678999998 4456667643
No 87
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=54.67 E-value=15 Score=31.31 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=15.4
Q ss_pred CCCCCCCCCCcCCCCceEEEE
Q 012225 98 QDGVQGTNCPIPSQWNWTYQF 118 (468)
Q Consensus 98 ~DGv~~tq~~I~PG~~~~y~f 118 (468)
-+||-|.|.-|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 456666677799999887753
No 88
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=50.95 E-value=59 Score=29.92 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=43.0
Q ss_pred eEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 217 ETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 217 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
..+.++.|+.+|+++-+.... |.|.+.+... .+..-||..-.+-++++ .+| .|..+..-
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~-~~G-~y~~~c~e 175 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI--HSFWVPELGG----------------KIDAIPGQYNALWFNAD-EPG-VYYGYCAE 175 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh--hcccccccCc----------------eEEecCCcEEEEEEEeC-CCE-EEEEEehh
Confidence 679999999999998875553 5666655432 24456788888888888 467 89887654
No 89
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=50.72 E-value=1.2e+02 Score=26.54 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred eEEEecCCEEEEEEEeCCCCCc---eeecCcccCC------CCCCCCCCC-C-----CCCCcCCCCceEEEEEeC
Q 012225 62 VLNATTNNNIVINVQNDLDESL---LMTWPGIQMR------RNSWQDGVQ-G-----TNCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 62 ~i~~~~Gd~v~v~v~N~l~~~~---siH~HG~~~~------~~~~~DGv~-~-----tq~~I~PG~~~~y~f~~~ 121 (468)
.=..++|.+..|.+.=...+.+ .--.||+-.- .-+..||-. + -.||+.+||.++|.+..|
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 3346778777776665543221 1223343211 112355543 1 359999999999999986
No 90
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=50.63 E-value=1.4e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=13.0
Q ss_pred EEEEEEcCCC-CeeeEEEeCCe
Q 012225 228 RVRVHNVGTS-TSLNFRIQNHN 248 (468)
Q Consensus 228 rlRliN~~~~-~~~~~~i~gh~ 248 (468)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5777777664 45666665544
No 91
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=50.11 E-value=53 Score=26.05 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=38.7
Q ss_pred EcCCCEEEEEEE--EcCCCCeeeEEEeCCe--eEEEEeeCccccceeeceE-EEcCCceEEEEEEecCC--CCcceEEEE
Q 012225 221 VDPGKTYRVRVH--NVGTSTSLNFRIQNHN--LLLVETEGHYTSQQNYTSF-EIHVGQSYSFLVTMDQN--ASSDYYIVA 293 (468)
Q Consensus 221 v~~G~~~rlRli--N~~~~~~~~~~i~gh~--~~Via~DG~~~~p~~~d~i-~l~pGqR~dv~v~~~~~--~g~~y~i~~ 293 (468)
-+|||++.+|++ +... . .-...++. ++|..-+|..+.. ... .......++.-+.++.. .| .|.|++
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G-~y~i~~ 83 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLG-TYTIRV 83 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---E-EEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCE-eEEEEE
Confidence 589999999999 6652 1 01122333 4555555554421 122 33567778888877654 36 999988
Q ss_pred Eec
Q 012225 294 SAR 296 (468)
Q Consensus 294 ~~~ 296 (468)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 763
No 92
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=48.45 E-value=91 Score=22.95 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=35.6
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
...|+++.|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+.+. .+| .|+|+..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~G-tYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAG-TYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSE-EEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCE-EEEEEEE
Confidence 367899999999988866555 223556666654332211111 01122222333443 457 8988763
No 93
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=47.92 E-value=1.2 Score=35.84 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=17.4
Q ss_pred CchhhHhHHHHHHH-HHHHHhhhhccccCccEEEEEEEEE-----EEECCCCceEEE---EEEcCcCCCceE-EEecCCE
Q 012225 1 MASLRFLSLFLVLP-IHIALFSSLCFAEDDTIFYDFKVSY-----ITASPLGVPQQV---IAINGKFPGAVL-NATTNNN 70 (468)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~l~~~~-----~~~~~dG~~~~~---~~~Ng~~PgP~i-~~~~Gd~ 70 (468)
|+++|.+...|+++ +.|..|++++ +..|-|-.=.+.+ ..+..||+.... ..=| -||.| .+++|..
T Consensus 1 Mk~L~~La~~L~alaLa~p~~~~a~--~~~TFE~~GvV~~v~~e~~lv~IDgq~YrLPn~v~q~---~~p~ifqvrpGsv 75 (118)
T PF14481_consen 1 MKSLRLLATALFALALACPGLAWAA--EPHTFEGAGVVQEVQPEKNLVDIDGQHYRLPNRVAQQ---GGPVIFQVRPGSV 75 (118)
T ss_dssp ----------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE--TT-EET---TEEGGGT--TT-E
T ss_pred CcchHHhhhhhhhhhhccccceecc--CcceecccceEEEeecccceEEEcCcEEeCCchhhhc---CCceEEEEcCCcE
Confidence 67777665555532 4455544332 2222222222222 224456643211 1112 36888 8999988
Q ss_pred EEEE
Q 012225 71 IVIN 74 (468)
Q Consensus 71 v~v~ 74 (468)
|...
T Consensus 76 VS~s 79 (118)
T PF14481_consen 76 VSFS 79 (118)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 94
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=45.84 E-value=1.5e+02 Score=28.02 Aligned_cols=18 Identities=0% Similarity=0.117 Sum_probs=12.7
Q ss_pred CceEEEecCCEEEEEEEe
Q 012225 60 GAVLNATTNNNIVINVQN 77 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N 77 (468)
.|.+|+..|++-.||+.-
T Consensus 79 PPlfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 79 PPLFVIQPKKENILRIMY 96 (228)
T ss_pred CCeEEECCCCceEEEEEE
Confidence 367788888777777653
No 95
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=45.61 E-value=1.1e+02 Score=28.55 Aligned_cols=90 Identities=10% Similarity=0.170 Sum_probs=61.4
Q ss_pred ECCCCceEEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCC-----ceeecCcccCCCCCCCCCCCCCCCCcCCCCceEE
Q 012225 42 ASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDES-----LLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTY 116 (468)
Q Consensus 42 ~~~dG~~~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~-----~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y 116 (468)
.+++|..--.+++.|.+---.|.|..|..+++++.=+.+.+ .+--||+.. ..+-+|-...
T Consensus 78 ~a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa---------------nlpl~q~ssI 142 (272)
T COG4633 78 FAPNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA---------------NLPLNQVSSI 142 (272)
T ss_pred cccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc---------------cCCcCceeEE
Confidence 34554433345555444334899999999999999887533 334455542 2456788888
Q ss_pred EEEeCCCceeeEEeeCccccccCCeeecEEEecCCC
Q 012225 117 QFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKV 152 (468)
Q Consensus 117 ~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 152 (468)
+|+. .++|.|-+-|-... |.|.+.|+...+
T Consensus 143 e~T~-~s~ge~af~cgmnm-----~~G~~~vet~~~ 172 (272)
T COG4633 143 EFTP-ISKGEYAFLCGMNM-----FRGNIQVETLTG 172 (272)
T ss_pred Eecc-ccccchhhhcchhh-----ccCeeEEEecCC
Confidence 9986 68999988887432 789999998664
No 96
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=44.67 E-value=2.6e+02 Score=25.97 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=48.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeC--cccccc
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS--LNLQRV 138 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H--~~~q~~ 138 (468)
..|.+..|..|++.++-+. . || ....+ .. +-+.-.-||..-...|++ +++|+|+=.|- .+.+-
T Consensus 130 n~l~iP~g~~v~~~ltS~D-V---iH--sf~vP---~l----~~k~daiPG~~~~~~~~~-~~~G~y~g~Cae~CG~~H- 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD-T---MT--SFWIP---QL----GGQKYAMTGMTMNWYLQA-DQVGTYRGRNANFNGEGF- 194 (217)
T ss_pred CcEEEECCCEEEEEEECCc-h---hh--hhhch---hh----CceeecCCCceEEEEEEe-CCCEEEEEEehhhcCccc-
Confidence 5789999999999998763 2 22 33221 11 112224589999999998 68999999986 23322
Q ss_pred CCeeecEEEecC
Q 012225 139 SGGFGPVIINNR 150 (468)
Q Consensus 139 ~Gl~G~liV~~~ 150 (468)
.-|...+.|.++
T Consensus 195 s~M~~~v~v~~~ 206 (217)
T TIGR01432 195 ADQTFDVNAVSE 206 (217)
T ss_pred cCCeEEEEEeCH
Confidence 236667776654
No 97
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=44.13 E-value=1.4e+02 Score=25.04 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=43.2
Q ss_pred EEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccc-------cceeeceEEEcCCceEEEEEEecCCCC
Q 012225 218 TINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT-------SQQNYTSFEIHVGQSYSFLVTMDQNAS 286 (468)
Q Consensus 218 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~-------~p~~~d~i~l~pGqR~dv~v~~~~~~g 286 (468)
.|+++....|+|++-..+ ...+.|+|.. ||+.++..- ......++.+..|++|+|-|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 467777778999998433 4677888875 466665443 244567888999999999998765444
No 98
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=43.89 E-value=1.4e+02 Score=28.20 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=11.1
Q ss_pred CceEEEecCCEEEEEEE
Q 012225 60 GAVLNATTNNNIVINVQ 76 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~ 76 (468)
.|.+|+++|+.-.||+.
T Consensus 75 PPl~rl~pg~~q~vRii 91 (230)
T PRK09918 75 PPVARVEPGQSQQVRFI 91 (230)
T ss_pred CCeEEECCCCceEEEEE
Confidence 36677777776666654
No 99
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=42.62 E-value=2.2e+02 Score=25.79 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=54.4
Q ss_pred eEEEcCcCCCCCCCccCCCCCcceEEEEcCCCEEEEEEEEcCCCCeeeEEEe-CC----eeEEEEeeCcccc-ceeece-
Q 012225 194 GVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQ-NH----NLLLVETEGHYTS-QQNYTS- 266 (468)
Q Consensus 194 ~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~-gh----~~~Via~DG~~~~-p~~~d~- 266 (468)
.|-+||... ..++|-+++|-++.+-|+|.... .|.+.+- .- .--.++.||..+. +-....
T Consensus 74 ~fNfnGts~------------G~mtIyiPaGw~V~V~f~N~e~~-pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~ 140 (195)
T TIGR03094 74 PFNFNGTSY------------GAMTIYLPAGWNVYVTFTNYESL-PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSI 140 (195)
T ss_pred cccccCccC------------CceEEEEeCCCEEEEEEEcCCCC-CccEEEecCCCCCCCccccccCceeEeecccccCc
Confidence 366778774 23889999999999999999865 4555542 11 1123455664432 111111
Q ss_pred ---EEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 267 ---FEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 267 ---i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
=-+..||+.+..++.- ++| .||+...
T Consensus 141 ~~~NGi~~Gqs~sg~~~~~-~~G-~YwlvCg 169 (195)
T TIGR03094 141 YYGNGISSGHSRSGWWNDT-SAG-KYWLVCG 169 (195)
T ss_pred cccccccccceeEEEeccC-CCe-eEEEEcc
Confidence 2256889988777666 578 9999764
No 100
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=41.87 E-value=69 Score=23.55 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=27.5
Q ss_pred EEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEE
Q 012225 219 INVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSF 277 (468)
Q Consensus 219 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv 277 (468)
+.+.+|+..+||.-.. ..+.+.+-...|.. +|. .+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 5677888888885442 23566655666532 442 23466666666643
No 101
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=40.56 E-value=99 Score=25.95 Aligned_cols=61 Identities=8% Similarity=0.211 Sum_probs=34.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCC---ceeecCc----ccCC-CCCCCCCCCCCCCCcCCCCceEEEEEeC
Q 012225 61 AVLNATTNNNIVINVQNDLDES---LLMTWPG----IQMR-RNSWQDGVQGTNCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~---~siH~HG----~~~~-~~~~~DGv~~tq~~I~PG~~~~y~f~~~ 121 (468)
..=.+++|..+.+.+.=..++. .....|| +... .-+..||=-...|||..|+.++|.+..+
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 3445777888777765333322 2333344 3221 1112444212579999999999999875
No 102
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.42 E-value=1.1e+02 Score=29.26 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=45.3
Q ss_pred eEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEec
Q 012225 217 ETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASAR 296 (468)
Q Consensus 217 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~~ 296 (468)
..+.++.|++++|++-.... .|.|.+.+-..+ +..-||...+..++++ .+| .|..+.+..
T Consensus 137 n~l~lPv~~~V~f~ltS~DV--iHsF~IP~l~~k----------------~d~iPG~~~~~~~~~~-~~G-~Y~g~Cae~ 196 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV--IHSFWIPQLGGK----------------IDAIPGMTTELWLTAN-KPG-TYRGICAEY 196 (247)
T ss_pred ceEEEeCCCeEEEEEEechh--ceeEEecCCCce----------------eeecCCceEEEEEecC-CCe-EEEEEcHhh
Confidence 67999999999999977654 477787766544 3445778888888888 467 899877544
No 103
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.98 E-value=3.4e+02 Score=25.59 Aligned_cols=75 Identities=12% Similarity=-0.114 Sum_probs=45.4
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-cccccC
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRVS 139 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~~ 139 (468)
..+.+..|..|++.++-.. . + |+...+. -| -+.-+-||..-...|.+ +++|+|+-.|.. -+..-.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-V---i--Hsf~ip~----~~---~k~da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H~ 205 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED-V---L--HSWAVPA----LG---VKMDAVPGRLNQTAFIA-SRPGVFYGQCSEICGANHS 205 (230)
T ss_pred ceEEEecCcEEEEEEEeCc-c---c--cceeccc----cC---CccccCCCceEEEEEEe-CCceEEEEEChhhcccccc
Confidence 3577788888888777653 1 2 4443221 11 12234589988889998 689999999973 111123
Q ss_pred CeeecEEEec
Q 012225 140 GGFGPVIINN 149 (468)
Q Consensus 140 Gl~G~liV~~ 149 (468)
.|.+.+.|.+
T Consensus 206 ~M~~~v~vv~ 215 (230)
T MTH00129 206 FMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEC
Confidence 4556666554
No 104
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=37.65 E-value=71 Score=25.38 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccc---c-eeeceEEEcCCceEEEE
Q 012225 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTS---Q-QNYTSFEIHVGQSYSFL 278 (468)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~---p-~~~d~i~l~pGqR~dv~ 278 (468)
.|++||-|.+.. .+-|-...+.|...||...+ + +.-..=.|.|||.+.--
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 478999998887 34555556666666653321 1 11245568888866443
No 105
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=37.60 E-value=2.4e+02 Score=23.51 Aligned_cols=64 Identities=9% Similarity=0.221 Sum_probs=37.3
Q ss_pred EEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccc-cceeeceEEEcCCceEEEEEEecCCCC
Q 012225 218 TINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT-SQQNYTSFEIHVGQSYSFLVTMDQNAS 286 (468)
Q Consensus 218 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~-~p~~~d~i~l~pGqR~dv~v~~~~~~g 286 (468)
.|+++....|+|++...+ ...+.|+|. .|++.++..- .+.....+.+..|++|.+.|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 355655566888885333 357778875 3444443321 122334677778888887776654333
No 106
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=37.32 E-value=27 Score=35.00 Aligned_cols=54 Identities=20% Similarity=0.438 Sum_probs=28.3
Q ss_pred CCCCCCCC-CCCCcCCCCceEEEEEeC-CCceeeEEeeCccccccCCeeec---EEEec
Q 012225 96 SWQDGVQG-TNCPIPSQWNWTYQFQVK-DQIGSFFYFPSLNLQRVSGGFGP---VIINN 149 (468)
Q Consensus 96 ~~~DGv~~-tq~~I~PG~~~~y~f~~~-~~~Gt~wyH~H~~~q~~~Gl~G~---liV~~ 149 (468)
.|+.|.|. ...++..|+.+.|+..+. -.+|+|--|.-...+-...+.|+ +.|++
T Consensus 70 ~~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 70 RWINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EEETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eeecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEec
Confidence 34555554 456789999988888774 35999855544444444445555 55554
No 107
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.12 E-value=91 Score=26.54 Aligned_cols=50 Identities=14% Similarity=0.350 Sum_probs=32.9
Q ss_pred EEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccc----ceeeceEEEcCCceEEEE
Q 012225 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTS----QQNYTSFEIHVGQSYSFL 278 (468)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~----p~~~d~i~l~pGqR~dv~ 278 (468)
.|++||-|.+.. .+.|-...+.|...||...+ ...-..=.|.|||.+.--
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 379999997754 45677778888777776432 122345568888876543
No 108
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=35.29 E-value=48 Score=28.80 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=23.1
Q ss_pred CCCCcCCCCceEEEEEe---CCCceeeEEeeC
Q 012225 104 TNCPIPSQWNWTYQFQV---KDQIGSFFYFPS 132 (468)
Q Consensus 104 tq~~I~PG~~~~y~f~~---~~~~Gt~wyH~H 132 (468)
-..||+||++++..+.. |...|+|.|++-
T Consensus 95 f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 95 FDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred eCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 35789999999999943 345799999876
No 109
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=35.12 E-value=3.9e+02 Score=25.13 Aligned_cols=75 Identities=12% Similarity=0.006 Sum_probs=49.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeC--cccccc
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS--LNLQRV 138 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H--~~~q~~ 138 (468)
..|++..|..|+++++-.. .-||...-.+. ..+| +-||..-...|++ +++|+|.-.|- .+.+-
T Consensus 139 nel~lP~g~pV~~~ltS~D-ViHSF~VP~l~----~K~D--------aiPG~~n~~~~~~-~~~G~y~g~CaE~CG~~H- 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS-VMNSFFIPQLG----SQIY--------AMAGMQTKLHLIA-NEPGVYDGISANYSGPGF- 203 (226)
T ss_pred ceEEEECCCEEEEEEEECc-hhhhhhhhhcC----Ceee--------cCCCceEEEEEEe-CCCEEEEEEchhhcCcCc-
Confidence 5789999999999988763 22222222221 1223 3588888888998 68999999987 23322
Q ss_pred CCeeecEEEecC
Q 012225 139 SGGFGPVIINNR 150 (468)
Q Consensus 139 ~Gl~G~liV~~~ 150 (468)
.-|..-++|.++
T Consensus 204 a~M~~~V~v~~~ 215 (226)
T TIGR01433 204 SGMKFKAIATDR 215 (226)
T ss_pred cCCeEEEEEECH
Confidence 337777777664
No 110
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.61 E-value=70 Score=28.31 Aligned_cols=44 Identities=18% Similarity=-0.010 Sum_probs=24.1
Q ss_pred CchhhHhHHHHHHHHHHHHhhhhccccCccEEEEEEEEEEE-ECCC
Q 012225 1 MASLRFLSLFLVLPIHIALFSSLCFAEDDTIFYDFKVSYIT-ASPL 45 (468)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~-~~~d 45 (468)
|...+.+++.++.+.++ ..|++..++.+.++++|+++... ++|+
T Consensus 1 M~~~~~a~~~l~al~~~-sgCsss~~~~pp~~l~l~l~a~~~~Np~ 45 (159)
T COG3521 1 MNSSRKAVLALFALLVL-SGCSSSKPLLPPSRLDLTLTAAPDLNPN 45 (159)
T ss_pred CchhHHHHHHHHHHHHh-hhhccCCCCCCCcEEEEEEEecCCcCCC
Confidence 44433333333333333 33455445556788888888765 5665
No 111
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.50 E-value=4e+02 Score=25.15 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=39.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeC
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS 132 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H 132 (468)
..+.+..|+.|++.+++. +.- |+...+ .-| -+.-.-||..-...|.+ +++|+|+--|.
T Consensus 144 n~lvlP~~~~v~~~itS~-DVi-----Hsf~vp----~lg---~k~daiPG~~~~~~~~~-~~~G~y~g~Cs 201 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA-DVL-----HSFAVP----SLS---VKIDAVPGRLNQTSFFI-KRPGVFYGQCS 201 (234)
T ss_pred eEEEEecCcEEEEEEEeC-chh-----cccccc----ccC---ceeEccCCceEeEEEEe-CCCEEEEEECh
Confidence 468899999999999987 332 333221 111 11223578888888888 68999998887
No 112
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=34.31 E-value=90 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.1
Q ss_pred ceEEEEcCCCEEEEEEEEc
Q 012225 216 YETINVDPGKTYRVRVHNV 234 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~ 234 (468)
+..++|++|++|+|...+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred CCEEEECCCCEEEEEECCC
Confidence 5789999999998877764
No 113
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.28 E-value=1.6e+02 Score=24.30 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=27.7
Q ss_pred EEEEEEEEcCCC-CeeeEEEeCC-eeEEEEeeCccccceeeceEEEcCCceEEEEEEec
Q 012225 226 TYRVRVHNVGTS-TSLNFRIQNH-NLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMD 282 (468)
Q Consensus 226 ~~rlRliN~~~~-~~~~~~i~gh-~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~ 282 (468)
.|+++|+|.+.. ..+.+.++|. .+++.. ....+.|.+|+..++-+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEE
Confidence 589999998875 4566666664 233311 24678999998887766543
No 114
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.15 E-value=33 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.1
Q ss_pred EEEcCcCCCceEEEecCCEEEEEEEeCCC
Q 012225 52 IAINGKFPGAVLNATTNNNIVINVQNDLD 80 (468)
Q Consensus 52 ~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~ 80 (468)
..+||+.-=|-=.|+.||.|+|++.|..-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 57899877788889999999999999864
No 115
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.80 E-value=1.1e+02 Score=32.16 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=10.0
Q ss_pred eEEEcCCceEEEEEEe
Q 012225 266 SFEIHVGQSYSFLVTM 281 (468)
Q Consensus 266 ~i~l~pGqR~dv~v~~ 281 (468)
.-.|.+|+.+.|.+.+
T Consensus 369 i~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 369 ISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HhhcCCCCeEEEEEec
Confidence 3445777776666654
No 116
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=31.99 E-value=2.2e+02 Score=23.67 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=35.9
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVAS 294 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~ 294 (468)
+..++|++|++++|.. ......|.+... ++... ....+.+.+|+++++-++ .+| .|.....
T Consensus 41 P~~ltV~~GdTVtw~~--~~d~~~HnV~s~---------~~~~f---~s~~~~~~~G~t~s~Tf~---~~G-~Y~Y~C~ 101 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEW--TGEGGGHNVVSD---------GDGDL---DESERVSEEGTTYEHTFE---EPG-IYLYVCV 101 (115)
T ss_pred CCEEEECCCCEEEEEE--CCCCCCEEEEEC---------CCCCc---cccccccCCCCEEEEEec---CCc-EEEEEcc
Confidence 5779999999988653 322223443322 22111 122345678999998884 357 7777543
No 117
>PRK13202 ureB urease subunit beta; Reviewed
Probab=31.50 E-value=1.7e+02 Score=23.90 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=39.7
Q ss_pred eEEEecC--CEEEEEEEeCCCCCc--eeecCcccCCCCCCCC-----C----CC-CCCCCcCCCCceEEEEEe
Q 012225 62 VLNATTN--NNIVINVQNDLDESL--LMTWPGIQMRRNSWQD-----G----VQ-GTNCPIPSQWNWTYQFQV 120 (468)
Q Consensus 62 ~i~~~~G--d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----v~-~tq~~I~PG~~~~y~f~~ 120 (468)
.|.+++| +++.++|+|..+.+. .-|+|=.+....-..| | .| +|..-..||++.+.+...
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 5899999 589999999998775 4588776543211112 1 12 244446788888887765
No 118
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=31.11 E-value=1.9e+02 Score=24.25 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=33.3
Q ss_pred EEEecCCEEEEEEEeCCCCC-----ceeecC--cccCCCC-CCCCCCC--CCCCCcCCCCceEEEEEeC
Q 012225 63 LNATTNNNIVINVQNDLDES-----LLMTWP--GIQMRRN-SWQDGVQ--GTNCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 63 i~~~~Gd~v~v~v~N~l~~~-----~siH~H--G~~~~~~-~~~DGv~--~tq~~I~PG~~~~y~f~~~ 121 (468)
=.+++|+.+.+++.=..++. +.+||. |+...-. ...|+=. +..|||.+|+.++|.+..+
T Consensus 24 C~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 24 CKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 34667777776665333222 223332 4432211 1234422 2679999999999999874
No 119
>PF06255 DUF1020: Protein of unknown function (DUF1020); InterPro: IPR008106 The pathogenic neisseriae are a small group of virulent bacteria that initiate infection at the human host mucosal membranes []. They are Gram-negative cocci and usually exist in pairs. Neisseria gonorrhoeae is passed through sexual transmission and can cause renal failure in extreme cases. The more extreme Neisseria meningitidis is a usually commensal nasopharynx microbe that causes meningococcemia and acute bacterial meningitis, especially in young children and teenagers []. There are several serogroups, of which types A, B and C are the most virulent. Despite recent advances in vaccinology, this pathogen is highly important to research and still poorly understood []. N. meningitidis has many virulence factors, its major determinant being a antiphagocytic polysaccharide capsule that allows the bacterium to evade the host immune response []. Vaccines based on this polysaccharide have proven effective against serogroups A and C meningococci, but serogroup Bstill does not possess an efficient vaccine, and causes the most severe form of meningitis []. It is believed that a conjugate protein vaccine derived from published neisserial genome sequences, rather than one based on polysaccharide, will be the best way of eradicating this disease []. The focus on novel vaccine targets for N. meningitidis has shifted to the adhesins the bacterium secretes to colonise host mucosal epithelia before a serious infection takes hold []. Interaction of these adhesion moleculeswith their cognate host receptors allows bacterial entry to the epithelium,intracellular transport across the host cell, and exit into the bloodstreamon the other side []. Following publication of the complete genome sequence of an N. meningitidis serogroup B strain [], several new adhesins have been identified, including one identical to MafB from N. gonorrhoreae.
Probab=30.47 E-value=1e+02 Score=29.84 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=29.0
Q ss_pred eeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeC
Q 012225 84 LMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 84 siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~ 121 (468)
.|||-|.+..+...+||.-+--.|-+-|.+-.|+|.+.
T Consensus 100 rl~w~G~EhHPaDgYDGPQGGgYP~P~GARDiYSY~vK 137 (327)
T PF06255_consen 100 RLHWTGSEHHPADGYDGPQGGGYPKPKGARDIYSYHVK 137 (327)
T ss_pred EEeccccccCccccCCCCCCCCCCCCCCccceeEEEec
Confidence 49999999877777888655445656688888988884
No 120
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.44 E-value=4.7e+02 Score=24.65 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=37.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeC
Q 012225 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS 132 (468)
Q Consensus 60 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H 132 (468)
...+.+..|..|++.++-.. . + |+...+ .-| -+.-.-||..-...|.+ +++|+|+--|.
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D-V---i--Hsf~iP----~lg---~k~daiPG~~~~~~~~~-~~~G~~~g~Cs 197 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED-V---L--HSWTVP----ALG---VKMDAVPGRLNQATFII-SRPGLYYGQCS 197 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc-c---c--cccccc----ccC---ceeEecCCceEEEEEEe-CCcEEEEEEch
Confidence 35677778888888777652 2 2 344322 111 12223588888888887 68999999887
No 121
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=29.88 E-value=2.3e+02 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=38.7
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
+..+++++|++++ ++|.+.. .|++...+-. .+.-.+.+.-.+++.+.+-++. +| .|.....+
T Consensus 53 PA~v~v~pGDTVt--w~~~d~~-~Hnv~~~~~~-----------~~~g~~~~~~~~~~s~~~Tfe~---~G-~Y~Y~C~P 114 (128)
T COG3794 53 PAEVTVKPGDTVT--WVNTDSV-GHNVTAVGGM-----------DPEGSGTLKAGINESFTHTFET---PG-EYTYYCTP 114 (128)
T ss_pred CcEEEECCCCEEE--EEECCCC-CceEEEeCCC-----------CcccccccccCCCcceEEEecc---cc-eEEEEecc
Confidence 5779999999865 5787775 2444333222 2323445666677888777754 57 78776543
No 122
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.71 E-value=2.5e+02 Score=26.40 Aligned_cols=75 Identities=15% Similarity=-0.082 Sum_probs=46.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc-cccccC
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRVS 139 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~~ 139 (468)
-.+.+..|..|++.+++. +.-|+....++. ..+| .-||..-...|.+ +++|+|+--|.. -+..-.
T Consensus 140 n~lvlP~~~~v~~~~tS~-DViHsf~vP~~~----~k~d--------aiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~Hs 205 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA-DVIHSWTVPSLG----VKVD--------AVPGRLNQIGFTI-TRPGVFYGQCSEICGANHS 205 (228)
T ss_pred ceEEEecCCEEEEEEEeC-CccccccccccC----ccee--------cCCCceEEEEEEe-CCCEEEEEEChhhcCcCcc
Confidence 467788899999999885 332222222221 1133 4588888888988 689999998872 111113
Q ss_pred CeeecEEEec
Q 012225 140 GGFGPVIINN 149 (468)
Q Consensus 140 Gl~G~liV~~ 149 (468)
-|...+.|.+
T Consensus 206 ~M~~~v~vv~ 215 (228)
T MTH00008 206 FMPIVLEAVD 215 (228)
T ss_pred CceeEEEEEC
Confidence 3556666554
No 123
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=29.39 E-value=75 Score=32.93 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=45.2
Q ss_pred eEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeC
Q 012225 62 VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS 132 (468)
Q Consensus 62 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H 132 (468)
+-.+++|+.+++.|+|.... ++-.||+.. -.|+ |.--+.|.-....+|.+ +++|.+||.|-
T Consensus 549 ~staps~~l~ef~Vkq~DEV--t~l~tnld~----Ved~---thgfv~p~~~v~~~v~p-q~tasvtf~a~ 609 (637)
T COG4263 549 TSTAPSFGLTEFKVKQGDEV--TVLTTNLDE----VEDL---THGFVIPNYGVNMEVKP-QRTASVTFYAD 609 (637)
T ss_pred eeccCCCceEEEEEecCcEE--EEEecccce----eccc---cceeeeccCceEEEEcc-CCceEEEEEcc
Confidence 55688999999999998554 455567743 2454 33456777888888887 68999999986
No 124
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=29.16 E-value=96 Score=25.92 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=25.9
Q ss_pred cccCcc-EEEEEEEEEEEECC-CCceEEEEEEcCcCCCceEE
Q 012225 25 FAEDDT-IFYDFKVSYITASP-LGVPQQVIAINGKFPGAVLN 64 (468)
Q Consensus 25 ~a~~~~-~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~PgP~i~ 64 (468)
.++..+ -.++|.++..+-.| +|++..++-.-...|.|-++
T Consensus 35 s~~~k~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~e 76 (131)
T PF10794_consen 35 SAASKVVNPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKE 76 (131)
T ss_pred hhhceecccEEEEEecCCCCcccceEEEEEeccccCCCCchh
Confidence 333333 47888888887655 47777666655666777643
No 125
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.00 E-value=49 Score=25.72 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=24.1
Q ss_pred eEEEEEEcCcCCCceEEEecCCEEEEE
Q 012225 48 PQQVIAINGKFPGAVLNATTNNNIVIN 74 (468)
Q Consensus 48 ~~~~~~~Ng~~PgP~i~~~~Gd~v~v~ 74 (468)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 567899999988999999999999875
No 126
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=28.61 E-value=2e+02 Score=22.00 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=36.2
Q ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEE
Q 012225 216 YETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVA 293 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~ 293 (468)
++.+++++|+++.| .|.... .|++.+.... ++. .......+.+|+.+.+.+ + .+| .|....
T Consensus 10 P~~i~v~~GdtVt~--~N~d~~-~Hnv~~~~g~------~~~----~~~~~~~~~~g~~~~~tf--~-~~G-~y~y~C 70 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREAM-PHNVHFVAGV------LGE----AALKGPMMKKEQAYSLTF--T-EAG-TYDYHC 70 (83)
T ss_pred CCEEEECCCCEEEE--EECCCC-CccEEecCCC------Ccc----ccccccccCCCCEEEEEC--C-CCE-EEEEEc
Confidence 57899999999876 576553 3555443211 111 111223467899998755 4 467 777654
No 127
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=28.19 E-value=5.8e+02 Score=24.99 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=15.3
Q ss_pred eEEEecCCE--EEEEEEeCCCCCcee
Q 012225 62 VLNATTNNN--IVINVQNDLDESLLM 85 (468)
Q Consensus 62 ~i~~~~Gd~--v~v~v~N~l~~~~si 85 (468)
...+.-|.. +.|.++|+...+.++
T Consensus 92 ~~~l~aG~~~~~LvgftN~g~~~~~V 117 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKGSEPFTV 117 (285)
T ss_pred cccccCCCeEEEEEEEEeCCCCCEEE
Confidence 344445554 567889998876554
No 128
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.17 E-value=5.2e+02 Score=24.49 Aligned_cols=74 Identities=16% Similarity=-0.028 Sum_probs=44.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc--ccccc
Q 012225 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL--NLQRV 138 (468)
Q Consensus 61 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~--~~q~~ 138 (468)
..+.+..|..|++.++-. +.-|+.....+. ..+| .-||..-...|++ +++|.|.-.|.. +.. -
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~iP~lg----vK~D--------aiPG~~n~~~~~~-~~~G~y~g~C~e~CG~~-H 215 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAVPSLG----LKID--------AVPGRLNQTGFFI-KRPGVFYGQCSEICGAN-H 215 (240)
T ss_pred ceEEEecCCEEEEEEEcC-CcccceeecccC----ceee--------cCCCcceeEEEEc-CCCEEEEEEchhhcCcC-c
Confidence 357788888888877755 333333333321 1233 3578888888887 689999999872 211 1
Q ss_pred CCeeecEEEec
Q 012225 139 SGGFGPVIINN 149 (468)
Q Consensus 139 ~Gl~G~liV~~ 149 (468)
.-|.+.+.|.+
T Consensus 216 s~M~~~v~vv~ 226 (240)
T MTH00023 216 SFMPIVIEAVS 226 (240)
T ss_pred cCCeEEEEEEC
Confidence 23555555554
No 129
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=26.99 E-value=3.2e+02 Score=24.32 Aligned_cols=74 Identities=14% Similarity=-0.082 Sum_probs=42.3
Q ss_pred eEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceEEEEEeCCCceeeEEeeCc--cccccC
Q 012225 62 VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL--NLQRVS 139 (468)
Q Consensus 62 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~y~f~~~~~~Gt~wyH~H~--~~q~~~ 139 (468)
.|.+..|..|++.++-. +.-|+....++. ..+| +-||..-...|.+ +++|+|+-.|.. +..- .
T Consensus 74 ~LvLP~g~~Vr~~lTS~-DVIHSF~VP~lg----vK~D--------avPGr~n~l~~~~-~~~G~y~gqCsElCG~gH-s 138 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT-DVIHSWSVPSLG----IKAD--------AIPGRLHKINTFI-LREGVFYGQCSEMCGTLH-G 138 (162)
T ss_pred CEEEeCCCEEEEEEEeC-ccceeeeccccC----ceee--------ccCCceEEEEEec-CCCeEEEEEcchhcCcCc-c
Confidence 35566666666665544 222222222221 1233 4578877888887 689999999982 2111 2
Q ss_pred CeeecEEEecC
Q 012225 140 GGFGPVIINNR 150 (468)
Q Consensus 140 Gl~G~liV~~~ 150 (468)
.|.+.+.|.++
T Consensus 139 ~M~~~V~vvs~ 149 (162)
T PTZ00047 139 FMPIVVEAVSP 149 (162)
T ss_pred CceEEEEEeCH
Confidence 36666766653
No 130
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=26.77 E-value=25 Score=31.45 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.3
Q ss_pred EEEecCCEEEEEEEeCCCCCceeecCcc
Q 012225 63 LNATTNNNIVINVQNDLDESLLMTWPGI 90 (468)
Q Consensus 63 i~~~~Gd~v~v~v~N~l~~~~siH~HG~ 90 (468)
...+-++++.+++.|++....++||||+
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~v 98 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGV 98 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceE
Confidence 3456678899999999999999999998
No 131
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=25.90 E-value=2.4e+02 Score=24.49 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=39.1
Q ss_pred CEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCcccccee-------eceEEEcCCceE-EEEEEec
Q 012225 225 KTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQN-------YTSFEIHVGQSY-SFLVTMD 282 (468)
Q Consensus 225 ~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~-------~d~i~l~pGqR~-dv~v~~~ 282 (468)
.+|-|.+=|.|... +.++.-.++|+ +||+.+.|.. .+.+.|.|||-- ++.+.-.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 57889999999874 46778888876 7998876533 246778999877 5555443
No 132
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=25.11 E-value=18 Score=30.89 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=33.6
Q ss_pred EEEEEEEEEEECCCCceEEEEEEcCcC-CCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCC
Q 012225 32 FYDFKVSYITASPLGVPQQVIAINGKF-PGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ 102 (468)
Q Consensus 32 ~~~l~~~~~~~~~dG~~~~~~~~Ng~~-PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 102 (468)
.|-++.++....... ....+.+.|.+ +|..-+-..+..++..++.. .....++.+|. .+..+.+|..
T Consensus 34 ~yy~t~se~~~~~~~-~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~--~Pd~F~eg~~ 101 (131)
T PF03100_consen 34 VYYLTPSELAAEPQK-VGRKVRVGGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGP--LPDLFREGQG 101 (131)
T ss_dssp S-EE-TTTTTTTST--TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES----CTT--TTSE
T ss_pred eEEcCHHHHhhcccc-CCceEEEeeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCC--CCccccCCCe
Confidence 555666554433331 11222344443 45443444788999999877 45578999998 4456677754
No 133
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=24.88 E-value=81 Score=27.28 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=30.6
Q ss_pred ecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCCcCCCCceE
Q 012225 66 TTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWT 115 (468)
Q Consensus 66 ~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~ 115 (468)
+-+..+.|+|.|..+.+.-+-| ...+|.+.....|+||++++
T Consensus 4 ~s~~~~~v~F~N~t~~~v~~~W--------id~~G~~~~Y~~l~pg~~~~ 45 (141)
T cd05468 4 NSRVPSTVRFVNRTDRPVELYW--------IDYDGKPVSYGTLQPGETVR 45 (141)
T ss_pred CCCceEEEEEEeCCCCeEEEEE--------ECCCCCEEEeeeeCCCCEEe
Confidence 3466789999999999998888 23555544445688888853
No 134
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.49 E-value=3.2e+02 Score=25.06 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=41.2
Q ss_pred eEEEEcCCCEEEEEEEEcCCCCeeeEEEeCCeeEEEEeeCccccceeeceEEEcCCceEEEEEEecCCCCcceEEEEEe
Q 012225 217 ETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (468)
Q Consensus 217 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~Via~DG~~~~p~~~d~i~l~pGqR~dv~v~~~~~~g~~y~i~~~~ 295 (468)
..+.++.|+++|+++-.... .|.|.+.+-..+ +..-||..-.+-++++ .+| .|......
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~-~~G-~y~g~C~e 174 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV--IHSFSVPDLNLK----------------MDAIPGRINHLFFCPD-RHG-VFVGYCSE 174 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc--ccceeccccCce----------------eecCCCceEEEEEEcC-CCE-EEEEEeeh
Confidence 45889999999999976555 467777655433 2334677777777777 467 88887653
No 135
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=23.27 E-value=70 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=17.5
Q ss_pred eEEEEEEcCcCC---CceEEEecCCEEEE
Q 012225 48 PQQVIAINGKFP---GAVLNATTNNNIVI 73 (468)
Q Consensus 48 ~~~~~~~Ng~~P---gP~i~~~~Gd~v~v 73 (468)
...++.+||++| .-.+.++.||+|+.
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEe
Confidence 457889999987 34788999999875
No 136
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.19 E-value=3.1e+02 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.8
Q ss_pred ceEEEEcCCCEEEEEEEEcC
Q 012225 216 YETINVDPGKTYRVRVHNVG 235 (468)
Q Consensus 216 ~~~~~v~~G~~~rlRliN~~ 235 (468)
+|.+++++|+...+|++..+
T Consensus 75 PPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred CCeEEECCCCceEEEEEECC
Confidence 48899999999999999765
No 137
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=22.00 E-value=5.2e+02 Score=22.33 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred EEEEEEEEEEEECCCCce---EEEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceeecCcccCCCCCCCCCCCCCCCC
Q 012225 31 IFYDFKVSYITASPLGVP---QQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCP 107 (468)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~---~~~~~~Ng~~PgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 107 (468)
-+|...+++.++.|+-.. --.+.++|.. |-+ +..|.-| |.|.=- -+|.|--.. . -=| -+.||
T Consensus 34 d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~nt-g~t--Is~Gk~V-IeV~y~-----gi~ihseth--D-LCd---etsCP 98 (153)
T KOG4680|consen 34 DEYEVKVKEVNISPNPPARGENATFSISGNT-GET--ISEGKYV-IEVSYG-----GIRIHSETH--D-LCD---ETSCP 98 (153)
T ss_pred ccceEEEEEEecCCCCCCCCCccEEEEeccc-ccE--eeCCeEE-EEEEEe-----eEEEeeccc--c-ccc---cccCC
Confidence 567889999999887432 2356777765 444 3455444 555432 233332211 0 011 15799
Q ss_pred cCCCCc
Q 012225 108 IPSQWN 113 (468)
Q Consensus 108 I~PG~~ 113 (468)
|+||+-
T Consensus 99 VepG~f 104 (153)
T KOG4680|consen 99 VEPGDF 104 (153)
T ss_pred cCcCce
Confidence 999953
No 138
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.80 E-value=6e+02 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.0
Q ss_pred CCcCCCCceEEEEEeC-CCceeeEE
Q 012225 106 CPIPSQWNWTYQFQVK-DQIGSFFY 129 (468)
Q Consensus 106 ~~I~PG~~~~y~f~~~-~~~Gt~wy 129 (468)
.-|+||++.++.|.+. ...|.|=.
T Consensus 81 ~~i~pg~~vsh~~vv~p~~~G~f~~ 105 (181)
T PF05753_consen 81 ERIPPGENVSHSYVVRPKKSGYFNF 105 (181)
T ss_pred EEECCCCeEEEEEEEeeeeeEEEEc
Confidence 3489999999999883 44777643
No 139
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=21.53 E-value=55 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.9
Q ss_pred EEEcCcCC-CceEEEecCCEEEE
Q 012225 52 IAINGKFP-GAVLNATTNNNIVI 73 (468)
Q Consensus 52 ~~~Ng~~P-gP~i~~~~Gd~v~v 73 (468)
..+||+.- -|..+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 56788864 67889999999986
No 140
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.32 E-value=58 Score=31.49 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=16.0
Q ss_pred eeEEeeCcc---------------ccccCCeeecEEEecCC
Q 012225 126 SFFYFPSLN---------------LQRVSGGFGPVIINNRK 151 (468)
Q Consensus 126 t~wyH~H~~---------------~q~~~Gl~G~liV~~~~ 151 (468)
.=|||||.+ .|...--+-++||+|..
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~R 174 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTR 174 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCcc
Confidence 469999943 12333366777777654
No 141
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=20.20 E-value=44 Score=27.78 Aligned_cols=7 Identities=14% Similarity=0.192 Sum_probs=5.9
Q ss_pred eEEeeCc
Q 012225 127 FFYFPSL 133 (468)
Q Consensus 127 ~wyH~H~ 133 (468)
=|||||.
T Consensus 69 G~YHSHP 75 (119)
T cd08058 69 GWYHSHP 75 (119)
T ss_pred EEEecCC
Confidence 4999995
No 142
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=20.01 E-value=1.9e+02 Score=25.10 Aligned_cols=17 Identities=0% Similarity=-0.101 Sum_probs=13.8
Q ss_pred CCCcCCCCceEEEEEeC
Q 012225 105 NCPIPSQWNWTYQFQVK 121 (468)
Q Consensus 105 q~~I~PG~~~~y~f~~~ 121 (468)
+..+.||+++++.++..
T Consensus 87 e~~l~PG~~~~~~~~~~ 103 (146)
T TIGR03352 87 EIILLPGEKRKITITLD 103 (146)
T ss_pred eEEECCCCeeEeeeecC
Confidence 45689999999998873
Done!