BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012226
         (468 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q80TL7|MON2_MOUSE Protein MON2 homolog OS=Mus musculus GN=Mon2 PE=2 SV=2
          Length = 1715

 Score = 33.1 bits (74), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 356 PVHSPQSSCDFGSGSWSGPGSRPGSGSGSDFAFCCTGPPILQSRGF---VMSATVEGGGK 412
           P  +P ++   G+ +  GP S P +          T  P  + RG    +++ TV+G  K
Sbjct: 404 PTGNPATANQAGNNNAGGPASAPANSGVVGVGGGVTLLPAFEYRGAWIPILTVTVQGSAK 463

Query: 413 CSKPEVEVGVQHVTCTEDAAAFVALAAAMDLSVDACTLFSHKL 455
            +  E+   V+  T  E  A  VA    +DL     T+   +L
Sbjct: 464 ATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGEL 506


>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1
           SV=2
          Length = 761

 Score = 32.3 bits (72), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 264 TPFVPSPGSDRVSRSNPGAWLILRPGNCTWKPWGRLEAWREPGNSDLLGYRFDLLHDTIS 323
           TP  P   + R  R    A+ +  PG+   KP+G       PG  D L  R    H T  
Sbjct: 491 TPMAPGGSTHRRDRQ---AFSMYEPGSA-LKPFGG-----PPG--DELTTRLQPFHSTEL 539

Query: 324 SNSSSTTVANANISSTKGGKFTIDMASSVSTTPV--HSPQSSCDFGSGSWSGPGSRPGSG 381
            + +  +V          G + I    S S  P    SP  SC       +   SR GSG
Sbjct: 540 EDDAIYSV------HVPAGLYRIRKGVSASAVPFTPSSPLLSCSQEGSRHTSKLSRHGSG 593

Query: 382 SGSDFAFCCTGPPILQSRG 400
           + SD+    +G P+L   G
Sbjct: 594 ADSDYENTQSGDPLLGLEG 612


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,697,257
Number of Sequences: 539616
Number of extensions: 7816738
Number of successful extensions: 23387
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 23042
Number of HSP's gapped (non-prelim): 264
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)