Query 012226
Match_columns 468
No_of_seqs 55 out of 57
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 00:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06219 DUF1005: Protein of u 100.0 5E-212 1E-216 1579.7 44.2 447 1-461 1-460 (460)
2 cd08690 C2_Freud-1 C2 domain f 95.5 0.47 1E-05 43.6 13.7 122 36-190 25-150 (155)
3 cd04016 C2_Tollip C2 domain pr 90.7 4.8 0.0001 35.2 11.2 97 37-164 23-120 (121)
4 cd08378 C2B_MCTP_PRT_plant C2 90.5 2.8 6E-05 35.9 9.4 101 35-164 16-118 (121)
5 cd04051 C2_SRC2_like C2 domain 89.8 4.3 9.3E-05 34.0 9.8 104 35-161 20-125 (125)
6 cd08400 C2_Ras_p21A1 C2 domain 89.8 5.2 0.00011 34.3 10.5 101 36-168 22-125 (126)
7 cd04022 C2A_MCTP_PRT_plant C2 89.5 2.8 6.2E-05 35.4 8.7 103 36-165 21-125 (127)
8 cd04036 C2_cPLA2 C2 domain pre 88.2 5.5 0.00012 33.2 9.4 55 100-166 64-118 (119)
9 cd08391 C2A_C2C_Synaptotagmin_ 81.8 21 0.00046 29.2 9.8 53 100-164 68-120 (121)
10 cd04043 C2_Munc13_fungal C2 do 80.9 24 0.00052 29.5 10.0 101 36-167 22-122 (126)
11 cd08373 C2A_Ferlin C2 domain f 79.5 23 0.0005 29.9 9.5 103 37-169 16-120 (127)
12 cd08678 C2_C21orf25-like C2 do 78.3 39 0.00085 28.6 10.6 61 100-169 59-123 (126)
13 cd04013 C2_SynGAP_like C2 doma 76.2 32 0.00069 31.5 10.1 99 37-166 28-139 (146)
14 cd04046 C2_Calpain C2 domain p 75.9 16 0.00034 31.2 7.6 59 100-169 63-125 (126)
15 cd04019 C2C_MCTP_PRT_plant C2 72.7 14 0.0003 33.3 6.8 62 101-166 63-132 (150)
16 cd04017 C2D_Ferlin C2 domain f 72.6 36 0.00078 29.3 9.1 105 37-165 23-131 (135)
17 cd04052 C2B_Tricalbin-like C2 71.8 18 0.00039 30.1 6.9 56 100-166 54-109 (111)
18 cd04015 C2_plant_PLD C2 domain 70.8 18 0.0004 32.6 7.2 97 34-164 56-156 (158)
19 cd08682 C2_Rab11-FIP_classI C2 70.1 28 0.0006 29.5 7.7 102 36-163 20-125 (126)
20 cd04011 C2B_Ferlin C2 domain s 68.8 22 0.00047 29.4 6.7 88 37-149 22-109 (111)
21 cd08681 C2_fungal_Inn1p-like C 64.6 80 0.0017 26.0 9.3 54 100-164 63-117 (118)
22 cd04042 C2A_MCTP_PRT C2 domain 63.8 36 0.00078 28.5 7.1 60 100-167 61-121 (121)
23 cd04044 C2A_Tricalbin-like C2 61.9 89 0.0019 25.7 10.6 58 100-167 65-124 (124)
24 cd04025 C2B_RasA1_RasA4 C2 dom 61.3 68 0.0015 26.8 8.3 96 36-164 21-123 (123)
25 cd08379 C2D_MCTP_PRT_plant C2 60.5 71 0.0015 28.3 8.7 98 35-161 23-125 (126)
26 cd08688 C2_KIAA0528-like C2 do 58.5 83 0.0018 26.1 8.3 87 36-148 21-107 (110)
27 cd08401 C2A_RasA2_RasA3 C2 dom 57.1 42 0.00091 28.7 6.5 57 101-165 63-121 (121)
28 cd04024 C2A_Synaptotagmin-like 56.1 1.2E+02 0.0025 25.2 9.0 99 37-164 25-127 (128)
29 cd04030 C2C_KIAA1228 C2 domain 55.8 1.2E+02 0.0026 25.3 9.6 86 36-148 37-126 (127)
30 cd08381 C2B_PI3K_class_II C2 d 53.7 1.1E+02 0.0023 26.3 8.5 41 100-149 81-122 (122)
31 cd08386 C2A_Synaptotagmin-7 C2 51.2 1.2E+02 0.0027 25.2 8.3 40 100-148 83-123 (125)
32 PF08122 NDUF_B12: NADH-ubiqui 50.6 3.7 8E-05 32.6 -0.8 14 294-307 3-16 (57)
33 cd04050 C2B_Synaptotagmin-like 50.1 81 0.0017 25.9 6.9 81 36-150 21-102 (105)
34 PF04360 Serglycin: Serglycin 49.5 10 0.00023 35.8 1.8 9 312-320 52-60 (150)
35 cd08388 C2A_Synaptotagmin-4-11 49.1 1.7E+02 0.0038 25.2 9.1 34 101-138 85-119 (128)
36 cd04014 C2_PKC_epsilon C2 doma 43.0 1.2E+02 0.0027 25.8 7.2 56 100-167 74-130 (132)
37 cd04033 C2_NEDD4_NEDD4L C2 dom 40.6 92 0.002 26.2 6.0 61 101-165 68-132 (133)
38 cd08376 C2B_MCTP_PRT C2 domain 40.0 1.3E+02 0.0028 24.7 6.7 52 100-164 61-113 (116)
39 cd04021 C2_E3_ubiquitin_ligase 39.1 2.5E+02 0.0054 24.0 8.6 58 100-162 61-123 (125)
40 cd04031 C2A_RIM1alpha C2 domai 37.0 2.4E+02 0.0052 23.3 8.5 28 100-131 85-112 (125)
41 PF00055 Laminin_N: Laminin N- 36.8 18 0.00039 35.5 1.4 60 280-348 110-176 (237)
42 cd00276 C2B_Synaptotagmin C2 d 35.1 2.6E+02 0.0057 23.2 7.9 84 35-150 34-122 (134)
43 cd04054 C2A_Rasal1_RasA4 C2 do 34.0 1.6E+02 0.0034 25.0 6.4 59 100-165 61-121 (121)
44 PLN03008 Phospholipase D delta 33.8 2.2E+02 0.0049 33.6 9.3 105 33-171 74-185 (868)
45 COG3287 Uncharacterized conser 32.3 52 0.0011 35.1 3.9 43 137-181 187-232 (379)
46 PF04360 Serglycin: Serglycin 31.8 36 0.00078 32.3 2.4 9 338-346 49-57 (150)
47 cd08375 C2_Intersectin C2 doma 31.1 3.3E+02 0.0073 23.9 8.2 97 36-165 36-135 (136)
48 cd08403 C2B_Synaptotagmin-3-5- 27.2 3.9E+02 0.0086 22.7 8.5 51 100-160 82-132 (134)
49 PRK14290 chaperone protein Dna 26.6 1.8E+02 0.0039 30.0 6.5 77 117-203 213-291 (365)
50 PHA02770 hypothetical protein; 25.7 75 0.0016 27.1 3.0 25 309-335 49-73 (81)
51 cd04029 C2A_SLP-4_5 C2 domain 25.3 2.8E+02 0.006 23.9 6.5 53 73-148 71-124 (125)
52 cd08394 C2A_Munc13 C2 domain f 24.8 3.8E+02 0.0083 24.4 7.5 78 36-148 21-99 (127)
53 cd08675 C2B_RasGAP C2 domain s 24.5 2.3E+02 0.0051 24.8 6.0 44 99-150 77-120 (137)
54 cd00030 C2 C2 domain. The C2 d 24.4 1.2E+02 0.0026 22.2 3.6 28 99-130 60-87 (102)
55 PRK14291 chaperone protein Dna 24.4 2.1E+02 0.0045 29.8 6.6 43 155-203 254-296 (382)
56 PF08495 FIST: FIST N domain; 24.0 98 0.0021 27.5 3.6 32 138-179 167-198 (198)
57 PRK14284 chaperone protein Dna 23.9 1.8E+02 0.0038 30.4 5.9 71 125-203 229-299 (391)
58 PRK14300 chaperone protein Dna 23.7 2.2E+02 0.0048 29.5 6.5 42 156-203 245-286 (372)
59 PLN02352 phospholipase D epsil 23.4 1.4E+02 0.0031 34.5 5.6 64 96-171 68-138 (758)
60 TIGR03835 termin_org_DnaJ term 23.3 4.3E+02 0.0094 31.4 9.2 104 50-171 632-741 (871)
61 cd08691 C2_NEDL1-like C2 domai 23.1 4.4E+02 0.0095 23.6 7.6 60 100-163 73-136 (137)
62 PF00609 DAGK_acc: Diacylglyce 22.8 77 0.0017 28.7 2.8 20 157-179 142-161 (161)
63 PF12416 DUF3668: Cep120 prote 22.7 5.8E+02 0.012 26.9 9.3 112 36-169 18-135 (340)
64 cd08393 C2A_SLP-1_2 C2 domain 22.3 3.8E+02 0.0082 22.9 6.8 82 36-148 37-124 (125)
65 cd08387 C2A_Synaptotagmin-8 C2 21.4 4.8E+02 0.011 21.8 10.0 53 73-148 69-122 (124)
66 smart00136 LamNT Laminin N-ter 21.2 60 0.0013 32.1 1.9 60 279-347 111-176 (238)
67 TIGR02011 IscA iron-sulfur clu 21.1 1.4E+02 0.0031 25.3 3.9 32 159-190 22-57 (105)
68 cd05867 Ig4_L1-CAM_like Fourth 20.8 1.4E+02 0.003 22.9 3.5 26 155-180 2-27 (76)
69 cd08377 C2C_MCTP_PRT C2 domain 20.8 4.3E+02 0.0093 21.6 6.6 56 100-165 61-118 (119)
70 PRK14298 chaperone protein Dna 20.6 3E+02 0.0066 28.7 6.9 17 156-172 245-261 (377)
71 cd05749 Ig2_Tyro3_like Second 20.1 3.3E+02 0.0071 22.1 5.6 48 155-202 14-67 (81)
No 1
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=100.00 E-value=5.2e-212 Score=1579.66 Aligned_cols=447 Identities=61% Similarity=1.001 Sum_probs=413.9
Q ss_pred CCCCCeeeEeeccccccCCCCCCCCCCCcccCCCCCceeEEEecCCCCcceeeeccccC-CCCCCCCCCCCCceeeEecC
Q 012226 1 MDPCPFVRILVGNLALKFPTVTSKPSFLSRIHPSSSSCYCKIKLKSFPDEIATVPLVQD-ETTPANGNLSHSLAACFNLN 79 (468)
Q Consensus 1 MDPcpFVRl~Vg~LaLk~P~~~~~~~~~~gVhpssspC~CkIrL~~fP~qta~vPL~~~-~~~~~p~~~~~~~Aa~F~Ld 79 (468)
|||||||||+|||||||||..+++++++.+|||+++||||||||+|||+|||+|||+++ ++++ | +++++||+||||
T Consensus 1 MDPcpFVRl~Vg~LaLk~P~~~~~~~a~sgvhpssspCfC~IrL~~fP~Qta~vPLi~~~~~~~-p--~~~~~Aa~F~Ld 77 (460)
T PF06219_consen 1 MDPCPFVRLSVGNLALKIPSSSASKSAGSGVHPSSSPCFCEIRLKGFPSQTAPVPLISSSEPEP-P--DSHSLAASFHLD 77 (460)
T ss_pred CCCCceEEEEecceeecCCCCcCCCCCcCccccCCCCeEEEEecCCCCccceeeeeccCCCCCC-C--CcCCcceEEecC
Confidence 99999999999999999997665555554799999999999999999999999999987 3333 5 899999999999
Q ss_pred HHHHHHHhccCCCCCCC--CCcceEEEEEEeCCCCCccc--CCCeeEEEEEEeccCCccCCCceEEecceeecCCCC---
Q 012226 80 KAQIDKILEKSKSPKSN--SGVISLRVDVYTGSNGMSCV--TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK--- 152 (468)
Q Consensus 80 ~s~l~~l~~~~~~~~s~--~~~~~L~v~Vy~Gr~G~~CG--~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~--- 152 (468)
|+||++|++|+ | +..++|||+||+||+|++|| +++||||+|+|+|||+|+|+||+|||||||+|||++
T Consensus 78 ~s~l~~l~~~~-----~f~~~~~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~ 152 (460)
T PF06219_consen 78 KSDLRRLLAKP-----CFYSPRPCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGS 152 (460)
T ss_pred HHHHHHHhCCC-----ccccCCceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCC
Confidence 99999999997 7 66699999999999999999 599999999999999999999999999999999963
Q ss_pred -CCCccEEEEEEeecCCCceEEEeCCccccCceEEEeeCCeecceeeeeeccccCCCCCCcccccccCCCCCCCcc-ccc
Q 012226 153 -KGSQAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQGSVKQAVFTCKFGFRNSNNDRNLVSRTSMTENSTPRSW-LSA 230 (468)
Q Consensus 153 -~~~~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG~~rQpvFtCKFs~r~~~~dr~~~~~~~~~~~~~~r~w-~~s 230 (468)
++++|||||+||+|||||||||||||||||||||||||+|||||||||||+|+|..++++++++++++.+.+|+| +++
T Consensus 153 ~~~~~aeLHl~Vr~EpDPRfVFQFdgepecSPQV~QiqG~~rQPvFsCKFs~~~~~~~~~~~sr~~~~~~~~sr~W~~s~ 232 (460)
T PF06219_consen 153 GKSPSAELHLVVRAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFSCKFSRDRNSQRDPLRSRSLSSDPSSSRSWSSSS 232 (460)
T ss_pred CCCCcceEEEEEeccCCCeeEEEcCCccccCcEEEEecCccccceeEEEEEecccCCccccccccccccccccccccccc
Confidence 346899999999999999999999999999999999999999999999999987767888999999999999999 778
Q ss_pred cCCccccCccccCCeEEEEecCCCChhhhhhccCcccCCCCCCcccccCCCeeEEEecCC-CCCcccccceeeccCCCCC
Q 012226 231 FGSEKDQSSKERKGWSITIHDLSGSPVAMASMVTPFVPSPGSDRVSRSNPGAWLILRPGN-CTWKPWGRLEAWREPGNSD 309 (468)
Q Consensus 231 ~~~e~e~~~kERKGW~ItIHDLSGSpVAaASMvTPFVPSpGSdrVSRSNPGAWLILRP~~-~sWkPWGRLEAWRErG~~d 309 (468)
+++|+|+++||||||+|||||||||||||||||||||||||||||||||||||||||||+ +|||||||||||||||++|
T Consensus 233 ~~se~e~~~rERKGW~VtIHDLSGSPVAaASMvTPFVPSpGSDrVSRSNPGAWLILRP~~~gsWkPWGRLEAWRErg~~d 312 (460)
T PF06219_consen 233 FGSERERPRRERKGWSVTIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDGDGSWKPWGRLEAWRERGGSD 312 (460)
T ss_pred cccccccccccccCcEEEEEcCCCCHHHHhhhcCCccCCCCCCceeccCCCeEEEEecCCCCCcccchhhhhhhccCCCC
Confidence 899999999999999999999999999999999999999999999999999999999976 7999999999999999999
Q ss_pred cceeEEEEeccCCCCCCceeeEeeeeeecCCCceEEEecCCCc--cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 012226 310 LLGYRFDLLHDTISSNSSSTTVANANISSTKGGKFTIDMASSV--STTPVHSPQSSCDFGSGSWSGPGSRPGSGSGSDFA 387 (468)
Q Consensus 310 ~lGyRFeLl~d~~~~~~~~v~~aes~is~~kGG~F~ID~~~~~--~~~p~~sp~~s~d~g~~~~~~~~~~~~~~~~~~~~ 387 (468)
+||||||||+|+. ++++|+|||++|+++|||||+||++++. .++|.+||++|+|++++++.+++..+...++++.+
T Consensus 313 ~lgyrfeL~~~~~--~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~tp~~sp~~s~d~~s~~~~~~~~~~~~~~~~~~d 390 (460)
T PF06219_consen 313 GLGYRFELLPDGG--VGGGVLVAESTISSKKGGEFSIDTDRQSTSATTPAPSPRSSGDFSSLSGSGSGGSPRCSPGSSGD 390 (460)
T ss_pred cceeEEEEccCCC--CCceEEEeeeeeccccCceeEEecCcccccccCCCCCCCCCccccccCCccCCCCCCCCCCCccc
Confidence 9999999999983 2379999999999999999999998752 46799999999999988777776655555555556
Q ss_pred cccCCCCcccccceEEEEEEecCCccCCCeEEEeeeeecchhhHHHHHHHHHhhcccccccccchHHHHHHHhh
Q 012226 388 FCCTGPPILQSRGFVMSATVEGGGKCSKPEVEVGVQHVTCTEDAAAFVALAAAMDLSVDACTLFSHKLRKELRQ 461 (468)
Q Consensus 388 ~~~~l~p~~~~~GFVMs~~V~Gegk~SkP~Vqvgv~HVtC~EDAA~FvALAAAVDLSmDACrlFs~kLRKEL~~ 461 (468)
| +|+| .|+||||||+||||||||||+|||||||||||||||+||||||||||||||||||+|||||||||
T Consensus 391 f--~~~~--~~~gfvms~~v~ge~~~skp~v~~~~~hv~c~edaa~f~alaaavdls~dac~~f~~klrkel~~ 460 (460)
T PF06219_consen 391 F--GLWP--GYGGFVMSCRVEGEGKCSKPTVQVGVRHVTCMEDAAAFVALAAAVDLSMDACRPFSRKLRKELCH 460 (460)
T ss_pred c--cccc--CCCceeEeeecccCCccCCceEEEeeeeeehHHHHHHHHHHHHHhhhhHhhhhhhHHHHHHHhcC
Confidence 6 7778 46999999999999999999999999999999999999999999999999999999999999996
No 2
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=95.54 E-value=0.47 Score=43.63 Aligned_cols=122 Identities=20% Similarity=0.342 Sum_probs=78.8
Q ss_pred CceeEEEec--CCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHH--HHHHhccCCCCCCCCCcceEEEEEEeCCC
Q 012226 36 SSCYCKIKL--KSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQ--IDKILEKSKSPKSNSGVISLRVDVYTGSN 111 (468)
Q Consensus 36 spC~CkIrL--~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~--l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~ 111 (468)
+=.|.|+.| ++--.|+.-=+.+.. +..| .-+-...|.++..+ +.|.+... .|++.||.-+.
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~--TlnP---vfNE~f~f~I~~~~~~~~R~l~~~----------~L~~~V~d~~~ 89 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKD--TNSP---EYNESFKLNINRKHRSFQRVFKRH----------GLKFEVYHKGG 89 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccC--CCCC---cccceEEEEeccccchhhhhccCC----------cEEEEEEeCCC
Confidence 346999976 323345555556633 2333 22334567776543 66666653 79999998432
Q ss_pred CCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeecCCCceEEEeCCccccCceEEEeeC
Q 012226 112 GMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQG 190 (468)
Q Consensus 112 G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG 190 (468)
= ....++||++.|+|+.--.. +..|+ |+.+=.+.|.-+..||+.||+. ||.-+-||.|++-
T Consensus 90 f---~~~D~~iG~~~i~L~~l~~~---~~~~~-~~~L~~~~k~~Gg~l~v~ir~r-----------~p~~~~~~~~~~~ 150 (155)
T cd08690 90 F---LRSDKLLGTAQVKLEPLETK---CEIHE-SVDLMDGRKATGGKLEVKVRLR-----------EPLTGKQLEEITE 150 (155)
T ss_pred c---ccCCCeeEEEEEEccccccc---CcceE-EEEhhhCCCCcCCEEEEEEEec-----------CCCccceeeeeee
Confidence 0 01467999999999742222 24566 9987444555788999999984 7899999988864
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=90.66 E-value=4.8 Score=35.24 Aligned_cols=97 Identities=11% Similarity=0.221 Sum_probs=58.2
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCccc
Q 012226 37 SCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCV 116 (468)
Q Consensus 37 pC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG 116 (468)
--||+|+|++-=.+| ..+.. .+..| .--..|++.- ... ...|.|.||.-..-
T Consensus 23 DPYv~i~lg~~~~kT---~v~~~-~~~nP-----~WNe~F~f~v-------~~~--------~~~l~~~V~d~d~~---- 74 (121)
T cd04016 23 DPYCRIRVGHAVYET---PTAYN-GAKNP-----RWNKTIQCTL-------PEG--------VDSIYIEIFDERAF---- 74 (121)
T ss_pred CceEEEEECCEEEEe---EEccC-CCCCC-----ccCeEEEEEe-------cCC--------CcEEEEEEEeCCCC----
Confidence 349999998732222 23322 23344 2234566642 111 24799999985542
Q ss_pred CCCeeEEEEEEeccCCccCCCceEEecceeecCC-CCCCCccEEEEEEe
Q 012226 117 TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-NKKGSQAQLYLTVK 164 (468)
Q Consensus 117 ~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~~~~~~aelhl~Vr 164 (468)
....+||.++|+|...-.++.+ -+.|..|-+ +++...-++||...
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~~---~~~W~~L~~~~~~~~~g~i~l~l~ 120 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGET---LDDWYSLSGKQGEDKEGMINLVFS 120 (121)
T ss_pred cCCceEEEEEEECchhccCCCC---ccccEeCcCccCCCCceEEEEEEe
Confidence 1457999999999643344543 399999944 33334579999864
No 4
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=90.51 E-value=2.8 Score=35.86 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=60.1
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCc
Q 012226 35 SSSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMS 114 (468)
Q Consensus 35 sspC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~ 114 (468)
++..||+|+|.+...+|.. +.. +..| .-=-.|.+...++ . ...|+|.||.-.+.
T Consensus 16 ~~Dpyv~v~l~~~~~kT~v---~~~--t~nP-----~Wne~F~f~~~~~-----~---------~~~L~~~v~d~d~~-- 69 (121)
T cd08378 16 SNDPVVEVKLGNYKGSTKA---IER--TSNP-----EWNQVFAFSKDRL-----Q---------GSTLEVSVWDKDKA-- 69 (121)
T ss_pred cCCCEEEEEECCccccccc---cCC--CCCC-----ccceEEEEEcCCC-----c---------CCEEEEEEEeCCCC--
Confidence 3457999999986555543 322 3344 1222355543221 1 35899999985432
Q ss_pred ccCCCeeEEEEEEeccCCccCC-CceEEecceeecCCCC-CCCccEEEEEEe
Q 012226 115 CVTTDKLLGRVSVPLDLRGAES-RPSVIHNGWAGIGENK-KGSQAQLYLTVK 164 (468)
Q Consensus 115 CG~~~kllG~v~v~ldl~~ae~-kp~v~hnGWi~iG~~~-~~~~aelhl~Vr 164 (468)
...+||++.++|+---... ..-..++.|..|-... .+..-||||.+.
T Consensus 70 ---~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~ 118 (121)
T cd08378 70 ---KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW 118 (121)
T ss_pred ---cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence 4568999999997321111 1122488999995421 235569998875
No 5
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=89.82 E-value=4.3 Score=33.97 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=60.3
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCc
Q 012226 35 SSSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMS 114 (468)
Q Consensus 35 sspC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~ 114 (468)
+.-+||+|++.+ .|+..-+.+.. ....|. =+-.-.|.+.+..| ... ...|.|.||.-++.
T Consensus 20 ~~dpYv~v~~~~--~~~~~T~~~~~-~~~~P~---Wne~f~f~v~~~~~----~~~--------~~~l~~~v~d~~~~-- 79 (125)
T cd04051 20 KMKVYAVVWIDP--SHKQSTPVDRD-GGTNPT---WNETLRFPLDERLL----QQG--------RLALTIEVYCERPS-- 79 (125)
T ss_pred CCceEEEEEECC--CcccccccccC-CCCCCC---CCCEEEEEcChHhc----ccC--------ccEEEEEEEECCCC--
Confidence 456899999987 22222233311 123331 12244566666554 222 35899999986542
Q ss_pred ccCCCeeEEEEEEecc-C-CccCCCceEEecceeecCCCCCCCccEEEE
Q 012226 115 CVTTDKLLGRVSVPLD-L-RGAESRPSVIHNGWAGIGENKKGSQAQLYL 161 (468)
Q Consensus 115 CG~~~kllG~v~v~ld-l-~~ae~kp~v~hnGWi~iG~~~~~~~aelhl 161 (468)
...++||.+.++|. + .....+. .+|-.|..+-+..+.+..+||+
T Consensus 80 --~~~~~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 --LGDKLIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCCCcEEEEEEEHHHhhcccCCCC-cceeEEEEeECCCCCcCeEEeC
Confidence 14579999999995 3 2222211 3577798886544446678875
No 6
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=89.75 E-value=5.2 Score=34.25 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=60.6
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|.|++...++..+ . . +..|. -=-.|+++. ..+. ...|.|.||.....
T Consensus 22 ~DPYv~v~l~~~~~~kT~v--~-~--~~nP~-----WnE~f~f~~------~~~~--------~~~l~v~v~d~~~~--- 74 (126)
T cd08400 22 PHPYCVISLNEVKVARTKV--R-E--GPNPV-----WSEEFVFDD------LPPD--------VNSFTISLSNKAKR--- 74 (126)
T ss_pred CCeeEEEEECCEeEEEeec--C-C--CCCCc-----cCCEEEEec------CCCC--------cCEEEEEEEECCCC---
Confidence 3469999999876543333 2 2 23442 112355531 1111 23688999986542
Q ss_pred cCCCeeEEEEEEeccCCccCCCceEEecceeecCCCC---CCCccEEEEEEeecCC
Q 012226 116 VTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK---KGSQAQLYLTVKSEPD 168 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~---~~~~aelhl~Vr~EPD 168 (468)
.....||+++++|.- -..+.. ...|..+-..+ ....-+|||.++..+|
T Consensus 75 -~~d~~iG~v~i~l~~-l~~~~~---~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 -SKDSEIAEVTVQLSK-LQNGQE---TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -CCCCeEEEEEEEHhH-ccCCCc---ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 245789999999872 122221 47899995531 2345799999987665
No 7
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=89.54 E-value=2.8 Score=35.43 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=60.0
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-+||+|.+.+-..+|..+ .. +..|. -+-.-.|++.+... + . ...|+|.||.-.+ .
T Consensus 21 ~dpyv~v~~~~~~~rT~v~---~~--t~nP~---Wne~f~f~~~~~~~--~--~---------~~~l~~~V~d~~~---~ 76 (127)
T cd04022 21 SSAYVELDFDGQKKRTRTK---PK--DLNPV---WNEKLVFNVSDPSR--L--S---------NLVLEVYVYNDRR---S 76 (127)
T ss_pred cCcEEEEEECCEEecceeE---cC--CCCCc---cceEEEEEccCHHH--c--c---------CCeEEEEEeeCCC---C
Confidence 3469999998865555543 11 23341 12234566543211 1 1 2489999998322 1
Q ss_pred cCCCeeEEEEEEeccCCccCCCceEEecceeecCCCC--CCCccEEEEEEee
Q 012226 116 VTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK--KGSQAQLYLTVKS 165 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~--~~~~aelhl~Vr~ 165 (468)
+....+||+++|+|+---.++ ..+..|..+.+.+ ...+.||||.+-+
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~---~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPS---EAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCC---CccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 124579999999996211222 2367899997632 2357799998754
No 8
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=88.24 E-value=5.5 Score=33.25 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=39.0
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeec
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSE 166 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~E 166 (468)
..|+|.||.-.+- ...+||++.++|+- -..+. -+..|..+.+. +..+||+.+.+|
T Consensus 64 ~~l~v~v~d~d~~-----~~~~iG~~~~~l~~-l~~g~---~~~~~~~L~~~---~~g~l~~~~~~~ 118 (119)
T cd04036 64 NVLELTVMDEDYV-----MDDHLGTVLFDVSK-LKLGE---KVRVTFSLNPQ---GKEELEVEFLLE 118 (119)
T ss_pred CEEEEEEEECCCC-----CCcccEEEEEEHHH-CCCCC---cEEEEEECCCC---CCceEEEEEEee
Confidence 3699999995431 44689999999962 12222 37789998653 245999998887
No 9
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=81.80 E-value=21 Score=29.20 Aligned_cols=53 Identities=19% Similarity=0.435 Sum_probs=36.4
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEe
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVK 164 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr 164 (468)
..|+|.||.-... ...+||++.++|+---..+ .++.|+.+=.. ...+|||.++
T Consensus 68 ~~l~i~v~d~~~~-----~~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~---~~G~~~~~~~ 120 (121)
T cd08391 68 QELEIELFDEDPD-----KDDFLGRLSIDLGSVEKKG----FIDEWLPLEDV---KSGRLHLKLE 120 (121)
T ss_pred CEEEEEEEecCCC-----CCCcEEEEEEEHHHhcccC----ccceEEECcCC---CCceEEEEEe
Confidence 5899999986543 4468999999985221222 26899998421 3458999864
No 10
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=80.90 E-value=24 Score=29.47 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=57.3
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-+||+|.+.+-+.+...-.++.. +..|. =+-.-.|++.+. . ...|+|.||....-
T Consensus 22 ~Dpyv~v~~~~~~~~~~kT~~~~~--t~~P~---Wne~f~f~i~~~-------~---------~~~L~i~v~d~d~~--- 77 (126)
T cd04043 22 SDPYVTLVDTNGKRRIAKTRTIYD--TLNPR---WDEEFELEVPAG-------E---------PLWISATVWDRSFV--- 77 (126)
T ss_pred CCceEEEEECCCCeeeecccEecC--CCCCc---ccceEEEEcCCC-------C---------CCEEEEEEEECCCC---
Confidence 346999998764333222223322 23331 111234555441 1 25899999986532
Q ss_pred cCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeecC
Q 012226 116 VTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EP 167 (468)
....+||+++++|+........ .-+.-|+.+-. ..++||.+.+|-
T Consensus 78 -~~~~~iG~~~i~l~~~~~~~~~-~~~~~w~~l~~-----~g~i~l~~~~~~ 122 (126)
T cd04043 78 -GKHDLCGRASLKLDPKRFGDDG-LPREIWLDLDT-----QGRLLLRVSMEG 122 (126)
T ss_pred -CCCceEEEEEEecCHHHcCCCC-CCceEEEEcCC-----CCeEEEEEEEee
Confidence 1456899999999742221101 12667999953 348899987763
No 11
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.47 E-value=23 Score=29.89 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=59.8
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCccc
Q 012226 37 SCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCV 116 (468)
Q Consensus 37 pC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG 116 (468)
-.||+|.+++.+.+|..+ . .+..|. =.--..|.++... .. ...|+|.||.=++.
T Consensus 16 Dpyv~v~~~~~~~kT~v~----~-~~~nP~---Wne~f~f~~~~~~-----~~---------~~~l~~~v~d~~~~---- 69 (127)
T cd08373 16 DRIAKVTFRGVKKKTRVL----E-NELNPV---WNETFEWPLAGSP-----DP---------DESLEIVVKDYEKV---- 69 (127)
T ss_pred CCEEEEEECCEeeeccee----C-CCcCCc---ccceEEEEeCCCc-----CC---------CCEEEEEEEECCCC----
Confidence 459999999987666543 1 122331 1112334443221 11 35899999984331
Q ss_pred CCCeeEEEEEEeccCCccCCCceEEecceeecCC-CCCCCccEEEEEEe-ecCCC
Q 012226 117 TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-NKKGSQAQLYLTVK-SEPDP 169 (468)
Q Consensus 117 ~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~~~~~~aelhl~Vr-~EPDP 169 (468)
....+||++.++|+--- .+ --...|..|=. +++..+.+|||.+. .+||.
T Consensus 70 ~~d~~iG~~~~~l~~l~-~~---~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 70 GRNRLIGSATVSLQDLV-SE---GLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred CCCceEEEEEEEhhHcc-cC---CceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 13469999999996211 11 12567888832 23334679999998 55554
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=78.27 E-value=39 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=40.8
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccC-CccCCCceEEecceeecCCC---CCCCccEEEEEEeecCCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDL-RGAESRPSVIHNGWAGIGEN---KKGSQAQLYLTVKSEPDP 169 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iG~~---~~~~~aelhl~Vr~EPDP 169 (468)
..|.|.||.-..- ...++||++.++|+- ...+. +..|..+-.. +.....+||+.++.-++.
T Consensus 59 ~~l~~~v~d~~~~----~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 59 KELLFEVYDNGKK----SDSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CEEEEEEEECCCC----CCCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 3799999975442 146799999999973 32222 1468887532 233577999999876665
No 13
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=76.23 E-value=32 Score=31.54 Aligned_cols=99 Identities=15% Similarity=0.299 Sum_probs=58.0
Q ss_pred ceeEEEecCCCCc-ceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeC--CCCC
Q 012226 37 SCYCKIKLKSFPD-EIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTG--SNGM 113 (468)
Q Consensus 37 pC~CkIrL~~fP~-qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~G--r~G~ 113 (468)
..||+|.|.+-=+ +|.. +.. +..| ---=.|+++ ..++ ...|.|.||.- ..+.
T Consensus 28 ~~Y~~i~Ld~~~vaRT~v---~~~--~~nP-----~W~E~F~f~-------~~~~--------~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 28 RYYCELCLDKTLYARTTS---KLK--TDTL-----FWGEHFEFS-------NLPP--------VSVITVNLYRESDKKKK 82 (146)
T ss_pred CceEEEEECCEEEEEEEE---EcC--CCCC-----cceeeEEec-------CCCc--------ccEEEEEEEEccCcccc
Confidence 4699999999542 4443 322 2233 234457773 1111 35789999842 1110
Q ss_pred cccCCCeeEEEEEEeccCCccCCCceEEecceeecCC-C-C--------CCCccEEEEEEeec
Q 012226 114 SCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-N-K--------KGSQAQLYLTVKSE 166 (468)
Q Consensus 114 ~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~-~--------~~~~aelhl~Vr~E 166 (468)
. .+..+||+|.||++-=. .+ ....+|..|=. . + ++.+++||+.+|..
T Consensus 83 ~--~~~~~IG~V~Ip~~~l~-~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 83 K--DKSQLIGTVNIPVTDVS-SR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred c--cCCcEEEEEEEEHHHhc-CC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 0 14579999999997311 12 23688999833 1 1 34678999998854
No 14
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=75.88 E-value=16 Score=31.19 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=39.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeec----CCCCCCCccEEEEEEeecCCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGI----GENKKGSQAQLYLTVKSEPDP 169 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i----G~~~~~~~aelhl~Vr~EPDP 169 (468)
..|+|.||.-++- ....||.++++++.. .... - -|..+ .+.+.+..-+|++.|.+.+||
T Consensus 63 ~~l~i~V~d~~~~-----~d~~lG~~~~~l~~~-~~~~---~--~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 63 SPIKIQVWNSNLL-----CDEFLGQATLSADPN-DSQT---L--RTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CEEEEEEEECCCC-----CCCceEEEEEecccC-CCcC---c--eEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 4899999985432 257999999999732 1111 1 23333 122333567999999999998
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=72.67 E-value=14 Score=33.27 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=38.9
Q ss_pred eEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCC--------CCCccEEEEEEeec
Q 012226 101 SLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK--------KGSQAQLYLTVKSE 166 (468)
Q Consensus 101 ~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~--------~~~~aelhl~Vr~E 166 (468)
.|.|.||.-.. + ....+||++.|+|+--..+..+-..+..|..+-... .+.+.+|||.+.+.
T Consensus 63 ~l~v~V~d~~~---~-~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 63 HLILSVEDRVG---P-NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred eEEEEEEEecC---C-CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 78888886432 1 144799999999962111112234578999985421 13567999987543
No 16
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=72.60 E-value=36 Score=29.35 Aligned_cols=105 Identities=11% Similarity=0.191 Sum_probs=58.2
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHH----HHHhccCCCCCCCCCcceEEEEEEeCCCC
Q 012226 37 SCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQI----DKILEKSKSPKSNSGVISLRVDVYTGSNG 112 (468)
Q Consensus 37 pC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l----~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G 112 (468)
-.||+|.+.+...+|..+ .. +..| .---.|.++...+ +.+... ...|.|.||.=.+-
T Consensus 23 dpyv~v~~~~~~~kT~v~---~~--t~nP-----~Wne~~~f~~~~~~~~~~~~~~~---------~~~l~v~V~d~d~~ 83 (135)
T cd04017 23 DPFARVSFLNQSQETEVI---KE--TLSP-----TWDQTLIFDEVELYGSPEEIAQN---------PPLVVVELFDQDSV 83 (135)
T ss_pred CCEEEEEECCeeeEeeeE---cC--CCCC-----ccCcEEEEeeeeccCChHHhhcC---------CCEEEEEEEeCcCC
Confidence 459999998766666543 11 2333 2222333332111 222322 25789999974331
Q ss_pred CcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEee
Q 012226 113 MSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKS 165 (468)
Q Consensus 113 ~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~ 165 (468)
....+||++.+..........+---+.-|..|-+.++ ...||+|.+.+
T Consensus 84 ----~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~-~~Geil~~~~~ 131 (135)
T cd04017 84 ----GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQ-SAGELLAAFEL 131 (135)
T ss_pred ----CCCccceEEEeeeeeecccCCCCCCCceEEEeecCCC-chhheeEEeEE
Confidence 2346999999732111111113335778999965433 56799998865
No 17
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=71.81 E-value=18 Score=30.15 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeec
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSE 166 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~E 166 (468)
..|+|.||.... . ....||++.|+|.---..+ - .+..|..+-. .+..+|||.+.--
T Consensus 54 ~~l~i~v~d~~~---~--~d~~iG~~~v~L~~l~~~~--~-~~~~w~~L~~---~~~G~i~~~~~~~ 109 (111)
T cd04052 54 SRVTVVVKDDRD---R--HDPVLGSVSISLNDLIDAT--S-VGQQWFPLSG---NGQGRIRISALWK 109 (111)
T ss_pred CEEEEEEEECCC---C--CCCeEEEEEecHHHHHhhh--h-ccceeEECCC---CCCCEEEEEEEEe
Confidence 479999999664 1 4578999999986211111 1 1579998853 2456999987643
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=70.77 E-value=18 Score=32.58 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=57.4
Q ss_pred CCCceeEEEecCCCCc-ceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCC
Q 012226 34 SSSSCYCKIKLKSFPD-EIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNG 112 (468)
Q Consensus 34 ssspC~CkIrL~~fP~-qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G 112 (468)
-++-+||+|+|.+-.. +|.. +.. +..|. ---.|++.-+ . . ...|+|.||.-..-
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v---~~~--~~nP~-----WnE~F~~~~~------~-~--------~~~l~~~V~d~d~~ 110 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRV---IEN--SENPV-----WNESFHIYCA------H-Y--------ASHVEFTVKDNDVV 110 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEE---eCC--CCCCc-----cceEEEEEcc------C-C--------CCEEEEEEEeCCCc
Confidence 3467899999987543 4443 222 23442 1123444211 1 1 13699999986542
Q ss_pred CcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC-CC--CCCccEEEEEEe
Q 012226 113 MSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-NK--KGSQAQLYLTVK 164 (468)
Q Consensus 113 ~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~~--~~~~aelhl~Vr 164 (468)
+..+||++.++|+-- ..+.+ -+.|+.|=. ++ ...+++|||.++
T Consensus 111 -----~~~~IG~~~i~l~~l-~~g~~---~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 111 -----GAQLIGRAYIPVEDL-LSGEP---VEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred -----CCcEEEEEEEEhHHc-cCCCC---cceEEECcCCCCCCCCCCCEEEEEEE
Confidence 236999999999731 12322 378999833 22 235789999987
No 19
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=70.14 E-value=28 Score=29.45 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=57.5
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-+||+|+|.+--.+|..+ . .+..|. =+-.-.|++...-.+. .. ...|.|.||.-.. .
T Consensus 20 ~dpYv~v~l~~~~~kT~v~---~--~t~nP~---Wne~f~F~v~~~~~~~---~~--------~~~l~~~v~d~~~---~ 77 (126)
T cd08682 20 NDAYVIIQLGKEKYSTSVK---E--KTTSPV---WKEECSFELPGLLSGN---GN--------RATLQLTVMHRNL---L 77 (126)
T ss_pred CCceEEEEECCeeeeeeee---c--CCCCCE---eCceEEEEecCcccCC---Cc--------CCEEEEEEEEccc---c
Confidence 4579999998644444422 1 123442 1112356665421111 11 3589999998542 1
Q ss_pred cCCCeeEEEEEEeccC-CccCCCceEEecceeecC-CCC--CCCccEEEEEE
Q 012226 116 VTTDKLLGRVSVPLDL-RGAESRPSVIHNGWAGIG-ENK--KGSQAQLYLTV 163 (468)
Q Consensus 116 G~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iG-~~~--~~~~aelhl~V 163 (468)
....+||++.|+|+- ....+.+ ...|..+- +.+ ++...||||.+
T Consensus 78 -~~d~~iG~~~i~l~~l~~~~~~~---~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 -GLDKFLGQVSIPLNDLDEDKGRR---RTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred -CCCceeEEEEEEHHHhhccCCCc---ccEEEECcCCCCCCccccceEEEEe
Confidence 134689999999963 2122332 46899984 322 23567999875
No 20
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=68.76 E-value=22 Score=29.41 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=48.0
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCccc
Q 012226 37 SCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCV 116 (468)
Q Consensus 37 pC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG 116 (468)
-.||+|+|.+-..+|..+ .. +..| .-=-.|+++...-..-+.. ..|+|.||.-++ .+
T Consensus 22 dpyv~v~~~~~~~kT~~~---~~--t~nP-----~wne~f~f~~~~~~~~l~~----------~~l~i~V~d~~~---~~ 78 (111)
T cd04011 22 DPVVKVEVGGQKKYTSVK---KG--TNCP-----FYNEYFFFNFHESPDELFD----------KIIKISVYDSRS---LR 78 (111)
T ss_pred CCEEEEEECCEeeeeeEE---ec--cCCC-----ccccEEEEecCCCHHHHhc----------CeEEEEEEcCcc---cc
Confidence 359999999865555432 11 2233 1122344432111111122 389999998543 22
Q ss_pred CCCeeEEEEEEeccCCccCCCceEEecceeecC
Q 012226 117 TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIG 149 (468)
Q Consensus 117 ~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG 149 (468)
..++||+++++|.-=-.... --+...|+.+-
T Consensus 79 -~~~~iG~~~i~l~~v~~~~~-~~~~~~w~~L~ 109 (111)
T cd04011 79 -SDTLIGSFKLDVGTVYDQPD-HAFLRKWLLLT 109 (111)
T ss_pred -cCCccEEEEECCccccCCCC-CcceEEEEEee
Confidence 35799999999962211211 24778898763
No 21
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=64.60 E-value=80 Score=26.05 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=36.0
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecCCCCCCCccEEEEEEe
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVK 164 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr 164 (468)
..|+|.||.-++. +..+||++.++|+ +.... -+..|..+-.+++ ..-+|||.+.
T Consensus 63 ~~l~i~v~d~~~~-----~~~~iG~~~~~l~~~~~~~-----~~~~w~~L~~~~~-~~G~i~l~l~ 117 (118)
T cd08681 63 PILKVAVFDDDKR-----KPDLIGDTEVDLSPALKEG-----EFDDWYELTLKGR-YAGEVYLELT 117 (118)
T ss_pred CEEEEEEEeCCCC-----CCcceEEEEEecHHHhhcC-----CCCCcEEeccCCc-EeeEEEEEEE
Confidence 5899999985432 2579999999997 22211 1578998854332 3458888763
No 22
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=63.79 E-value=36 Score=28.47 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC-CCCCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-NKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~~~~~~aelhl~Vr~EP 167 (468)
..|+|.||.-... ....+||++.++|. +...+++ +..|+.+-. ++.+...+|||.|+.-|
T Consensus 61 ~~l~~~v~D~d~~----~~~~~iG~~~~~l~-~l~~~~~---~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 61 QPLYIKVFDYDRG----LTDDFMGSAFVDLS-TLELNKP---TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CeEEEEEEeCCCC----CCCcceEEEEEEHH-HcCCCCC---eEEEEECCCCCCccCceEEEEEEEECC
Confidence 4799999985442 14468999999996 2222333 556888832 22235679999998765
No 23
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=61.87 E-value=89 Score=25.66 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=35.3
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecc-eeecCCCCCCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNG-WAGIGENKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnG-Wi~iG~~~~~~~aelhl~Vr~EP 167 (468)
..|+|.||.-... ...++||+++++|+ +..... +.. |..+-.++ ++.-+||+.++.-|
T Consensus 65 ~~l~~~v~d~~~~----~~d~~iG~~~~~l~~l~~~~~-----~~~~~~~~~~~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 65 EPLNLTVYDFNDK----RKDKLIGTAEFDLSSLLQNPE-----QENLTKNLLRNG-KPVGELNYDLRFFP 124 (124)
T ss_pred CEEEEEEEecCCC----CCCceeEEEEEEHHHhccCcc-----ccCcchhhhcCC-ccceEEEEEEEeCC
Confidence 4799999985432 24579999999986 332222 122 33333322 25569999987644
No 24
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=61.28 E-value=68 Score=26.82 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=55.3
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|.+.+...+|..+. . +..|. =.-.-.|++.+.+ ...|.|.||.-..-
T Consensus 21 ~DPyv~v~~~~~~~kT~v~~---~--t~nP~---Wne~f~f~~~~~~----------------~~~l~~~v~d~~~~--- 73 (123)
T cd04025 21 SDPFVRVFYNGQTLETSVVK---K--SCYPR---WNEVFEFELMEGA----------------DSPLSVEVWDWDLV--- 73 (123)
T ss_pred cCceEEEEECCEEEeceeec---C--CCCCc---cCcEEEEEcCCCC----------------CCEEEEEEEECCCC---
Confidence 34599999987666665432 1 22331 1112345544311 24799999975431
Q ss_pred cCCCeeEEEEEEecc-CCccCCCceEEecceeecCCC------CCCCccEEEEEEe
Q 012226 116 VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGEN------KKGSQAQLYLTVK 164 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~------~~~~~aelhl~Vr 164 (468)
....+||++.++|+ +..... +.+|..+-.. ..+..-+|++.||
T Consensus 74 -~~~~~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 74 -SKNDFLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -CCCcEeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 13468999999996 322111 4789988541 1224558888775
No 25
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=60.49 E-value=71 Score=28.28 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCc
Q 012226 35 SSSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMS 114 (468)
Q Consensus 35 sspC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~ 114 (468)
++-+||+|++.+--.+|..++ . +..| .---.|++.-. .. ...|+|.||.-+.-..
T Consensus 23 ~sDPYv~i~~g~~~~rTk~~~---~--~~nP-----~WnE~f~f~v~------~~---------~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 23 STDAYCVAKYGPKWVRTRTVE---D--SSNP-----RWNEQYTWPVY------DP---------CTVLTVGVFDNSQSHW 77 (126)
T ss_pred CCCeeEEEEECCEEeEcCccc---C--CCCC-----cceeEEEEEec------CC---------CCEEEEEEEECCCccc
Confidence 456799999987655555442 1 2344 22233444321 11 2379999999654110
Q ss_pred cc--CCCeeEEEEEEeccCCccCCCceEEecceeecCC-C--CCCCccEEEE
Q 012226 115 CV--TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE-N--KKGSQAQLYL 161 (468)
Q Consensus 115 CG--~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~-~--~~~~~aelhl 161 (468)
=+ ....+||+++|+|.---. + . -++.|..+-. + +.+...+||+
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~-~-~--~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLED-D-R--VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccC-C-C--EEeeEEEeEeCCCCCccCCcEEEe
Confidence 00 245789999999863111 1 1 2578998753 1 1225678886
No 26
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=58.46 E-value=83 Score=26.12 Aligned_cols=87 Identities=15% Similarity=0.252 Sum_probs=49.7
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-+||+|.+.+-..+|..+ .. +..| .=.+--..|.+...+| .. ..|+|.||.-...
T Consensus 21 ~Dpyv~v~~~~~~~kT~v~---~~--~~nP--~W~ne~f~f~i~~~~l----~~----------~~l~i~V~d~d~~--- 76 (110)
T cd08688 21 TDAFVEVKFGSTTYKTDVV---KK--SLNP--VWNSEWFRFEVDDEEL----QD----------EPLQIRVMDHDTY--- 76 (110)
T ss_pred CCceEEEEECCeeEeccee---cC--CCCC--cccCcEEEEEcChHHc----CC----------CeEEEEEEeCCCC---
Confidence 3469999998743444422 11 2333 1101223566666553 11 3899999996542
Q ss_pred cCCCeeEEEEEEeccCCccCCCceEEecceeec
Q 012226 116 VTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i 148 (468)
....+||++.++|+--.... +-...++|..|
T Consensus 77 -~~~~~iG~~~~~l~~l~~~~-~~~~~~~w~~l 107 (110)
T cd08688 77 -SANDAIGKVYIDLNPLLLKD-SVSQISGWFPI 107 (110)
T ss_pred -CCCCceEEEEEeHHHhcccC-CccccCCeEEc
Confidence 13468999999997322211 12228999875
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=57.11 E-value=42 Score=28.72 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=38.4
Q ss_pred eEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCC--CCCCccEEEEEEee
Q 012226 101 SLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN--KKGSQAQLYLTVKS 165 (468)
Q Consensus 101 ~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~--~~~~~aelhl~Vr~ 165 (468)
.|.|.||....- ....+||++.++|+-- ..+.. ...|..|-.. .++...+|||.+|.
T Consensus 63 ~l~~~v~d~~~~----~~~~~iG~~~i~l~~l-~~~~~---~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 63 HLSFYIYDRDVL----RRDSVIGKVAIKKEDL-HKYYG---KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEECCCC----CCCceEEEEEEEHHHc-cCCCC---cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 799999987642 2346899999998621 11221 4789999542 22246799999874
No 28
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=56.05 E-value=1.2e+02 Score=25.19 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=55.1
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCccc
Q 012226 37 SCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCV 116 (468)
Q Consensus 37 pC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG 116 (468)
-.||+|++++...+|.. +.. +..|. =+-...|++.+ .. ...|+|.||....- +
T Consensus 25 dPyv~v~~~~~~~kT~~---~~~--t~~P~---Wne~f~~~~~~-------~~---------~~~l~i~v~d~~~~---~ 77 (128)
T cd04024 25 DPYAILSVGAQRFKTQT---IPN--TLNPK---WNYWCEFPIFS-------AQ---------NQLLKLILWDKDRF---A 77 (128)
T ss_pred CCeEEEEECCEEEecce---ecC--CcCCc---cCCcEEEEecC-------CC---------CCEEEEEEEECCCC---C
Confidence 45999999875444433 322 23341 11123455432 11 35899999986541 1
Q ss_pred CCCeeEEEEEEeccCCccCCCceEEecceeecCCC----CCCCccEEEEEEe
Q 012226 117 TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN----KKGSQAQLYLTVK 164 (468)
Q Consensus 117 ~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~----~~~~~aelhl~Vr 164 (468)
...+||+++++|+---..+. --.+..|+.+=.. .....-+|||.+.
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred -CCCcceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence 34689999999963211111 1135789988321 1224668998763
No 29
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=55.82 E-value=1.2e+02 Score=25.25 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=47.5
Q ss_pred CceeEEEecCCCC--cceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCC
Q 012226 36 SSCYCKIKLKSFP--DEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGM 113 (468)
Q Consensus 36 spC~CkIrL~~fP--~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~ 113 (468)
+-+||+|.|..-. .++.--..+.. +..| .-+-.-.|.+...++. . ..|+|.||.-..
T Consensus 37 ~dpyv~v~l~~~~~~~~~~kT~v~~~--~~nP---~wne~f~f~i~~~~l~----~----------~~l~i~v~~~~~-- 95 (127)
T cd04030 37 PDPYVRLYLLPDKSKSTRRKTSVKKD--NLNP---VFDETFEFPVSLEELK----R----------RTLDVAVKNSKS-- 95 (127)
T ss_pred CCceEEEEEEcCCCCCceEecccccC--CCCC---EECeEEEEecCHHHhc----C----------CEEEEEEEECCc--
Confidence 4579999995322 11111112211 2233 1122345667666652 1 379999998543
Q ss_pred cc-cCCCeeEEEEEEecc-CCccCCCceEEecceeec
Q 012226 114 SC-VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 114 ~C-G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 148 (468)
. +....+||.+.++|+ +...+ -+++|..|
T Consensus 96 -~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L 126 (127)
T cd04030 96 -FLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDL 126 (127)
T ss_pred -ccCCCCceEEEEEEecccccccC-----CccceEEC
Confidence 2 135679999999996 33332 25888765
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=53.67 E-value=1.1e+02 Score=26.28 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=28.0
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIG 149 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG 149 (468)
..|+|.||.=... ....+||.+.|+|. +...+. ..+|..||
T Consensus 81 ~~L~~~V~d~d~~----~~~~~lG~~~i~l~~l~~~~~-----~~~W~~L~ 122 (122)
T cd08381 81 RVLQVSVWSHDSL----VENEFLGGVCIPLKKLDLSQE-----TEKWYPLG 122 (122)
T ss_pred CEEEEEEEeCCCC----cCCcEEEEEEEeccccccCCC-----ccceEECc
Confidence 4899999974332 24568999999995 332221 47898876
No 31
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=51.25 E-value=1.2e+02 Score=25.16 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=26.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeec
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 148 (468)
..|++.||.=.+. ....+||+++++|. ++..+. ++.|..|
T Consensus 83 ~~l~~~v~d~d~~----~~~~~iG~~~i~l~~l~~~~~-----~~~W~~l 123 (125)
T cd08386 83 RVLYLQVLDYDRF----SRNDPIGEVSLPLNKVDLTEE-----QTFWKDL 123 (125)
T ss_pred CEEEEEEEeCCCC----cCCcEeeEEEEecccccCCCC-----cceEEec
Confidence 3799999963221 13468999999996 343322 6677765
No 32
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=50.58 E-value=3.7 Score=32.57 Aligned_cols=14 Identities=50% Similarity=1.063 Sum_probs=12.1
Q ss_pred cccccceeeccCCC
Q 012226 294 KPWGRLEAWREPGN 307 (468)
Q Consensus 294 kPWGRLEAWRErG~ 307 (468)
.||.|-||||-.+.
T Consensus 3 DPW~RneaWRy~~~ 16 (57)
T PF08122_consen 3 DPWARNEAWRYHPQ 16 (57)
T ss_pred ChHhhhHHHhCCcc
Confidence 49999999999664
No 33
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=50.09 E-value=81 Score=25.89 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=48.6
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+..||+|+|.+ |+..-+.+.. +..|. -+-...|++...+ ...|+|.||.-+.
T Consensus 21 ~dpyv~v~~~~---~~~kT~v~~~--t~nP~---Wne~f~f~v~~~~----------------~~~l~v~v~d~~~---- 72 (105)
T cd04050 21 PSPYVELTVGK---TTQKSKVKER--TNNPV---WEEGFTFLVRNPE----------------NQELEIEVKDDKT---- 72 (105)
T ss_pred CCcEEEEEECC---EEEeCccccC--CCCCc---ccceEEEEeCCCC----------------CCEEEEEEEECCC----
Confidence 45799999998 3333334422 34442 1223445553211 2379999998543
Q ss_pred cCCCeeEEEEEEecc-CCccCCCceEEecceeecCC
Q 012226 116 VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGE 150 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~ 150 (468)
.++||++.|+|+ +.. .+-...+.|..+-+
T Consensus 73 ---~~~iG~~~i~l~~l~~---~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 ---GKSLGSLTLPLSELLK---EPDLTLDQPFPLDN 102 (105)
T ss_pred ---CCccEEEEEEHHHhhc---cccceeeeeEecCC
Confidence 478999999996 221 12345799998843
No 34
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=49.52 E-value=10 Score=35.77 Aligned_cols=9 Identities=56% Similarity=0.741 Sum_probs=5.1
Q ss_pred eeEEEEecc
Q 012226 312 GYRFDLLHD 320 (468)
Q Consensus 312 GyRFeLl~d 320 (468)
|=-|+|+++
T Consensus 52 GP~FdL~pG 60 (150)
T PF04360_consen 52 GPLFDLLPG 60 (150)
T ss_pred CCceecCCC
Confidence 345777654
No 35
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=49.12 E-value=1.7e+02 Score=25.22 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCc
Q 012226 101 SLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRP 138 (468)
Q Consensus 101 ~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp 138 (468)
.|+|.||.=.+- ....+||++.|+|. ++..+..+
T Consensus 85 ~L~~~V~d~d~~----~~d~~lG~~~i~L~~l~~~~~~~ 119 (128)
T cd08388 85 SLHFAVLSFDRY----SRDDVIGEVVCPLAGADLLNEGE 119 (128)
T ss_pred EEEEEEEEcCCC----CCCceeEEEEEeccccCCCCCce
Confidence 799999873211 24569999999994 56665555
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=43.00 E-value=1.2e+02 Score=25.76 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=38.5
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecCCCCCCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EP 167 (468)
..|.|.||....- ....+||++.|+|+ +....+.. +..|+.+- +..+|||.++.+.
T Consensus 74 ~~l~~~v~d~~~~----~~~~~iG~~~i~l~~l~~~~~~~---~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAI----GPDDFVANCTISFEDLIQRGSGS---FDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCC----CCCceEEEEEEEhHHhcccCCCc---ccEEEEcc-----CCcEEEEEEEEec
Confidence 4899999975431 14568999999997 33321221 58899984 3459999998764
No 37
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=40.61 E-value=92 Score=26.22 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCcc-CCCceEEecceeecCCC--CCCCccEEEEEEee
Q 012226 101 SLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGA-ESRPSVIHNGWAGIGEN--KKGSQAQLYLTVKS 165 (468)
Q Consensus 101 ~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~a-e~kp~v~hnGWi~iG~~--~~~~~aelhl~Vr~ 165 (468)
.|.|.||.-..- ....+||++.++|+ +... ...-...|..|..+-+. ..+...||||.|..
T Consensus 68 ~l~~~v~d~~~~----~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 68 RLLFEVFDENRL----TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred EEEEEEEECCCC----CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 689999975431 13468999999986 2221 11114568889988542 22357799999863
No 38
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=40.04 E-value=1.3e+02 Score=24.70 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=36.2
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecCCCCCCCccEEEEEEe
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVK 164 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr 164 (468)
..|+|.||.-+.- ....+||++.++|+ +.. ++ -|.-|..+... +.+|||.+.
T Consensus 61 ~~l~v~v~d~~~~----~~~~~iG~~~~~l~~l~~--~~---~~~~w~~L~~~----~G~~~~~~~ 113 (116)
T cd08376 61 QILEIEVWDKDTG----KKDEFIGRCEIDLSALPR--EQ---THSLELELEDG----EGSLLLLLT 113 (116)
T ss_pred CEEEEEEEECCCC----CCCCeEEEEEEeHHHCCC--CC---ceEEEEEccCC----CcEEEEEEE
Confidence 4899999986541 24578999999986 222 22 37789998643 348888765
No 39
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=39.08 E-value=2.5e+02 Score=24.04 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=33.9
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEec--ceeecCCCC---CCCccEEEEE
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHN--GWAGIGENK---KGSQAQLYLT 162 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hn--GWi~iG~~~---~~~~aelhl~ 162 (468)
..|+|.||.-+.- ....+||+++++|+-- .....-.+++ .|+.+=+.+ .+..-+||+.
T Consensus 61 ~~l~~~V~d~~~~----~~~~~iG~~~i~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 123 (125)
T cd04021 61 STLEFKVWSHHTL----KADVLLGEASLDLSDI-LKNHNGKLENVKLTLNLSSENKGSSVKVGELTVI 123 (125)
T ss_pred CEEEEEEEeCCCC----CCCcEEEEEEEEHHHh-HhhcCCCccceEEEEEEEccCCCcceeeeeEEEE
Confidence 4799999986541 2446899999999621 1112223355 578774322 1234466664
No 40
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=37.01 E-value=2.4e+02 Score=23.30 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDL 131 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl 131 (468)
..|+|.||.=++. ....+||++.++|+-
T Consensus 85 ~~l~~~V~d~~~~----~~~~~iG~~~i~l~~ 112 (125)
T cd04031 85 RTLEVTVWDYDRD----GENDFLGEVVIDLAD 112 (125)
T ss_pred CEEEEEEEeCCCC----CCCcEeeEEEEeccc
Confidence 4899999984432 245699999999975
No 41
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=36.80 E-value=18 Score=35.45 Aligned_cols=60 Identities=23% Similarity=0.499 Sum_probs=34.1
Q ss_pred CCeeEEEec-CCCCCcccccceeeccCCCCCccee-EEEEeccCC-C--CCC-ceeeEee-eeeecCCCceEEEec
Q 012226 280 PGAWLILRP-GNCTWKPWGRLEAWREPGNSDLLGY-RFDLLHDTI-S--SNS-SSTTVAN-ANISSTKGGKFTIDM 348 (468)
Q Consensus 280 PGAWLILRP-~~~sWkPWGRLEAWRErG~~d~lGy-RFeLl~d~~-~--~~~-~~v~~ae-s~is~~kGG~F~ID~ 348 (468)
|.+|+|-|= |.|||+||--+-. | |+ +|.+...+. . .|- ..+...+ +.|....||+....+
T Consensus 110 P~~miierS~D~gtW~p~qYfA~-------~--C~~~f~~~~~~~~~~~~~~~~v~Ct~~yS~~~P~~~g~V~f~~ 176 (237)
T PF00055_consen 110 PAAMIIERSSDFGTWQPWQYFAS-------D--CSRTFGMPPNGPPPKFANPDEVICTSRYSDIEPLTGGEVIFSL 176 (237)
T ss_dssp -SEEEEEEESSTTSEEEEEEEES-------S--HHHHCS--BTTGGG-STSTT---EESTTTTSSSTSTTEEEEES
T ss_pred CCeEEEEEccCCCceeEeHHhhc-------C--ChhhcCCcccccccccCCCCcCeecCcCCCCcCccccceeeee
Confidence 899999997 5589999976531 2 44 355554431 0 011 2344443 557777899987765
No 42
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=35.12 E-value=2.6e+02 Score=23.20 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCceeEEEecCCCCc-----ceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeC
Q 012226 35 SSSCYCKIKLKSFPD-----EIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTG 109 (468)
Q Consensus 35 sspC~CkIrL~~fP~-----qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~G 109 (468)
..-+||+|.|..... +|.. +.. +..|. -+---.|.++..+| . ...|+|.||.=
T Consensus 34 ~~dpyv~v~l~~~~~~~~~~~T~~---~~~--~~~P~---wne~f~f~i~~~~l-----~---------~~~l~~~v~d~ 91 (134)
T cd00276 34 LSDPYVKVSLLQGGKKLKKKKTSV---KKG--TLNPV---FNEAFSFDVPAEQL-----E---------EVSLVITVVDK 91 (134)
T ss_pred CCCcEEEEEEEcCCeEeeeecCcc---eec--CCCCe---eeeeEEEECCHHHh-----C---------CcEEEEEEEec
Confidence 345799999976532 3332 211 22331 11124577777655 2 24899999985
Q ss_pred CCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC
Q 012226 110 SNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE 150 (468)
Q Consensus 110 r~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~ 150 (468)
... ...++||.++++|+- ..++ .+-|..+=+
T Consensus 92 ~~~----~~~~~lG~~~i~l~~-~~~~-----~~~W~~l~~ 122 (134)
T cd00276 92 DSV----GRNEVIGQVVLGPDS-GGEE-----LEHWNEMLA 122 (134)
T ss_pred CCC----CCCceeEEEEECCCC-CCcH-----HHHHHHHHh
Confidence 432 255799999999986 2221 367777644
No 43
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=34.00 E-value=1.6e+02 Score=24.98 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=37.2
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC--CCCCCccEEEEEEee
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE--NKKGSQAQLYLTVKS 165 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~--~~~~~~aelhl~Vr~ 165 (468)
..|+|.||....- ....+||++.++++.--..++. ...|+.+=. ...+..-++||.|++
T Consensus 61 ~~l~v~v~d~~~~----~~d~~iG~~~~~~~~~~~~~~~---~~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 61 HTVSFYVLDEDTL----SRDDVIGKVSLTREVISAHPRG---IDGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred CEEEEEEEECCCC----CCCCEEEEEEEcHHHhccCCCC---CCcEEECeeeCCCCccccEEEEEEEC
Confidence 4789999986531 1447899999998632222221 468999822 112235599999874
No 44
>PLN03008 Phospholipase D delta
Probab=33.76 E-value=2.2e+02 Score=33.60 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCCceeEEEecCCCCc-ceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCC
Q 012226 33 PSSSSCYCKIKLKSFPD-EIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSN 111 (468)
Q Consensus 33 pssspC~CkIrL~~fP~-qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~ 111 (468)
-.+|-.|.+|+|.+--+ +|. ++.. +..| .---.|++.-++ + ...|++.||.-..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTr---Vi~n--~~NP-----vWNE~F~f~vah------~---------~s~L~f~VkD~D~ 128 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTR---VLKN--SQEP-----LWDEKFNISIAH------P---------FAYLEFQVKDDDV 128 (868)
T ss_pred cCCCCceEEEEECCcceeeEE---eCCC--CCCC-----CcceeEEEEecC------C---------CceEEEEEEcCCc
Confidence 45678899999976332 233 2222 3345 223456665443 2 2479999999443
Q ss_pred CCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCC---CCCCccEEEEEEe---ecCCCce
Q 012226 112 GMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN---KKGSQAQLYLTVK---SEPDPRF 171 (468)
Q Consensus 112 G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~---~~~~~aelhl~Vr---~EPDPRf 171 (468)
- +..+||++.|||.- -..+.. -.+|..|=++ ..+++++||+.++ ++-||-|
T Consensus 129 ~-----gaD~IG~a~IPL~~-L~~Ge~---vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~ 185 (868)
T PLN03008 129 F-----GAQIIGTAKIPVRD-IASGER---ISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSY 185 (868)
T ss_pred c-----CCceeEEEEEEHHH-cCCCCc---eEEEEEccccCCCCCCCCcEEEEEEEEEEccccccc
Confidence 2 23689999999962 222332 3799999442 2236899999976 4556654
No 45
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=32.30 E-value=52 Score=35.11 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=32.6
Q ss_pred CceEEecceeecCCC---CCCCccEEEEEEeecCCCceEEEeCCcccc
Q 012226 137 RPSVIHNGWAGIGEN---KKGSQAQLYLTVKSEPDPRFVFQFDGEPEC 181 (468)
Q Consensus 137 kp~v~hnGWi~iG~~---~~~~~aelhl~Vr~EPDPRfVFQFdgepec 181 (468)
-.++++++|+.+|-. +=.|..+.-.+=|+++| -|.+|||||+.
T Consensus 187 avi~l~~t~l~f~~~~~~g~~Pt~~~~~VTka~~~--vV~EiDgePA~ 232 (379)
T COG3287 187 AVILLFGTQLKFGHGFAHGFVPTDKTGVVTKADGD--VVYEIDGEPAA 232 (379)
T ss_pred eEEEEecceEEeecccccceEEccceEEEEeecCc--EEEEeCCCcHH
Confidence 457889999999752 22266677777788888 89999999974
No 46
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=31.85 E-value=36 Score=32.31 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=5.9
Q ss_pred cCCCceEEE
Q 012226 338 STKGGKFTI 346 (468)
Q Consensus 338 ~~kGG~F~I 346 (468)
.+||=-|-+
T Consensus 49 eEKGP~FdL 57 (150)
T PF04360_consen 49 EEKGPLFDL 57 (150)
T ss_pred cccCCceec
Confidence 367777766
No 47
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=31.09 E-value=3.3e+02 Score=23.91 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=51.8
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|.+++...+|..+. . +..|. -+-.-.|.+. ++ . ...|.|.||.-.. +
T Consensus 36 ~DPYv~v~~~~~~~kT~vi~---~--t~nP~---Wne~f~f~v~--~~------~--------~~~l~i~V~D~d~---~ 88 (136)
T cd08375 36 SDPYCEVSMGSQEHKTKVVS---D--TLNPK---WNSSMQFFVK--DL------E--------QDVLCITVFDRDF---F 88 (136)
T ss_pred cCcEEEEEECCEeeeccccC---C--CCCCc---cCceEEEEec--Cc------c--------CCEEEEEEEECCC---C
Confidence 44699999987554444332 1 23341 1112334443 11 1 2489999998543 2
Q ss_pred cCCCeeEEEEEEecc-CCc--cCCCceEEecceeecCCCCCCCccEEEEEEee
Q 012226 116 VTTDKLLGRVSVPLD-LRG--AESRPSVIHNGWAGIGENKKGSQAQLYLTVKS 165 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~--ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~ 165 (468)
+ ...+||++.++|. +.. ...++.+ --|+.+- ++ ..-|+||.+..
T Consensus 89 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~--~~~~~~~--~~-~~g~i~l~~~~ 135 (136)
T cd08375 89 S-PDDFLGRTEIRVADILKETKESKGPI--TKRLLLH--EV-PTGEVVVKLDL 135 (136)
T ss_pred C-CCCeeEEEEEEHHHhccccccCCCcE--EEEeccc--cc-cceeEEEEEEe
Confidence 2 3469999999995 322 2223221 1245441 11 22399998864
No 48
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=27.17 E-value=3.9e+02 Score=22.74 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEE
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLY 160 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelh 160 (468)
..|+|.||.-..- ....+||++.|+++... ++ ...|-.+-.+...+-+|-|
T Consensus 82 ~~l~~~v~d~~~~----~~~~~IG~~~l~~~~~~-~~-----~~~w~~~~~~~~~~~~~wh 132 (134)
T cd08403 82 VSLIIAVVDYDRV----GHNELIGVCRVGPNADG-QG-----REHWNEMLANPRKPIAQWH 132 (134)
T ss_pred CEEEEEEEECCCC----CCCceeEEEEECCCCCC-ch-----HHHHHHHHHCCCCeeeEee
Confidence 4799999985431 24579999999987322 22 4788887554333556666
No 49
>PRK14290 chaperone protein DnaJ; Provisional
Probab=26.62 E-value=1.8e+02 Score=29.96 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCeeEEEEEEeccC-Cc-cCCCceEEecceeecCCCCCCCccEEEEEEeecCCCceEEEeCCccccCceEEEeeCCeec
Q 012226 117 TTDKLLGRVSVPLDL-RG-AESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQGSVKQ 194 (468)
Q Consensus 117 ~~~kllG~v~v~ldl-~~-ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG~~rQ 194 (468)
..+.+..+.+|.|.+ .+ .++--++|.+ = |....+....|+++|+++|+|.|. =+|. -.++-+.=++.+
T Consensus 213 G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g-~---G~~~~~~~GDL~v~v~v~~h~~F~--R~G~----DL~~~~~Isl~e 282 (365)
T PRK14290 213 GTGTVVVNEDISVKIPKGATDNLRLRVKG-K---GQSYGGRTGDLYVVLRVNNDPNIQ--RIND----DLYVDQKINFPQ 282 (365)
T ss_pred CceeEEEeeEEEEEECCCCCCCcEEEEcc-c---cCCCCCCCCCEEEEEEEcCCCCEE--EecC----CEEEEEEeCHHH
Confidence 344444544555543 33 3344455554 1 111122456899999999999653 4452 223323224555
Q ss_pred ceeeeeecc
Q 012226 195 AVFTCKFGF 203 (468)
Q Consensus 195 pvFtCKFs~ 203 (468)
.+.-+++..
T Consensus 283 Al~G~~~~I 291 (365)
T PRK14290 283 AALGGEIEI 291 (365)
T ss_pred HhCCCEEEE
Confidence 555555443
No 50
>PHA02770 hypothetical protein; Provisional
Probab=25.70 E-value=75 Score=27.07 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=17.6
Q ss_pred CcceeEEEEeccCCCCCCceeeEeeee
Q 012226 309 DLLGYRFDLLHDTISSNSSSTTVANAN 335 (468)
Q Consensus 309 d~lGyRFeLl~d~~~~~~~~v~~aes~ 335 (468)
++--|||||+... +|+..|.+-|-.
T Consensus 49 ~~~hyrfelifsk--dnsvsitige~i 73 (81)
T PHA02770 49 NGRHYRFELIFSK--DNSVSITIGELI 73 (81)
T ss_pred cCceEEEEEEEec--CCcEEEEEeEEE
Confidence 4456999999864 455677777754
No 51
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=25.25 E-value=2.8e+02 Score=23.88 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=33.5
Q ss_pred eeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcccCCCeeEEEEEEeccC-CccCCCceEEecceeec
Q 012226 73 AACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDL-RGAESRPSVIHNGWAGI 148 (468)
Q Consensus 73 Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~i 148 (468)
.-.|.++..+| . ...|+|.||.-... ....+||.+.++|+- +-... +.+|+.+
T Consensus 71 ~f~f~i~~~~l----~----------~~~L~~~V~d~~~~----~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l 124 (125)
T cd04029 71 TLKYSISHSQL----E----------TRTLQLSVWHYDRF----GRNTFLGEVEIPLDSWNFDSQ-----HEECLPL 124 (125)
T ss_pred eEEEECCHHHh----C----------CCEEEEEEEECCCC----CCCcEEEEEEEeCCcccccCC-----cccEEEC
Confidence 34567776665 2 23799999974321 244689999999962 22222 6788764
No 52
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=24.80 E-value=3.8e+02 Score=24.43 Aligned_cols=78 Identities=19% Similarity=0.363 Sum_probs=48.0
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
.| ||+|++++ |....+.+.. ..| .=+--..|++++ . ...|+|.|+.-..
T Consensus 21 dP-YV~Ik~g~---~k~kT~v~~~---~nP---~WnE~F~F~~~~---------~--------~~~L~v~V~dkd~---- 69 (127)
T cd08394 21 NT-YVTLKVQN---VKSTTIAVRG---SQP---CWEQDFMFEINR---------L--------DLGLVIELWNKGL---- 69 (127)
T ss_pred CC-eEEEEECC---EEeEeeECCC---CCC---ceeeEEEEEEcC---------C--------CCEEEEEEEeCCC----
Confidence 35 99999988 5666666622 234 123345677642 2 1359999999442
Q ss_pred cCCCeeEEEEEEecc-CCccCCCceEEecceeec
Q 012226 116 VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 148 (468)
....+||+++|+|. +-.++. .+..-|..+
T Consensus 70 -~~DD~lG~v~i~L~~v~~~~~---~~~~~Wy~L 99 (127)
T cd08394 70 -IWDTLVGTVWIPLSTIRQSNE---EGPGEWLTL 99 (127)
T ss_pred -cCCCceEEEEEEhHHcccCCC---CCCCccEec
Confidence 25679999999996 222222 344566666
No 53
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=24.46 E-value=2.3e+02 Score=24.84 Aligned_cols=44 Identities=27% Similarity=0.451 Sum_probs=30.5
Q ss_pred cceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC
Q 012226 99 VISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE 150 (468)
Q Consensus 99 ~~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~ 150 (468)
...|+|.||..... ....+||+++++|+--- ... -+..|..|-.
T Consensus 77 ~~~l~i~V~d~~~~----~~~~~IG~~~i~l~~l~-~~~---~~~~W~~L~~ 120 (137)
T cd08675 77 KSELRVELWHASMV----SGDDFLGEVRIPLQGLQ-QAG---SHQAWYFLQP 120 (137)
T ss_pred ccEEEEEEEcCCcC----cCCcEEEEEEEehhhcc-CCC---cccceEecCC
Confidence 45899999987653 24578999999986211 111 2588999865
No 54
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=24.44 E-value=1.2e+02 Score=22.16 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=21.7
Q ss_pred cceEEEEEEeCCCCCcccCCCeeEEEEEEecc
Q 012226 99 VISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD 130 (468)
Q Consensus 99 ~~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld 130 (468)
...|+|+||....- ...++||++.+++.
T Consensus 60 ~~~l~i~v~~~~~~----~~~~~ig~~~~~l~ 87 (102)
T cd00030 60 SDTLTVEVWDKDRF----SKDDFLGEVEIPLS 87 (102)
T ss_pred CCEEEEEEEecCCC----CCCceeEEEEEeHH
Confidence 35899999996542 14579999999986
No 55
>PRK14291 chaperone protein DnaJ; Provisional
Probab=24.41 E-value=2.1e+02 Score=29.76 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=25.9
Q ss_pred CccEEEEEEeecCCCceEEEeCCccccCceEEEeeCCeecceeeeeecc
Q 012226 155 SQAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQGSVKQAVFTCKFGF 203 (468)
Q Consensus 155 ~~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG~~rQpvFtCKFs~ 203 (468)
....|+++|++.|+|+|.- +| ...++.+.=++.+.+.=|++..
T Consensus 254 ~~GDL~v~i~~~~h~~F~r--~G----~DL~~~~~Isl~eAl~G~~~~i 296 (382)
T PRK14291 254 PPGDLYIIVKVKPHPLFER--RG----DNLYLDVNITVAEAVLGTELEV 296 (382)
T ss_pred CCccEEEEEEEccCCCeee--ec----CCeEEEEEeeHHHHhCCCEEEE
Confidence 3458999999999997553 44 2344444334555555454443
No 56
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=24.03 E-value=98 Score=27.46 Aligned_cols=32 Identities=28% Similarity=0.752 Sum_probs=24.7
Q ss_pred ceEEecceeecCCCCCCCccEEEEEEeecCCCceEEEeCCcc
Q 012226 138 PSVIHNGWAGIGENKKGSQAQLYLTVKSEPDPRFVFQFDGEP 179 (468)
Q Consensus 138 p~v~hnGWi~iG~~~~~~~aelhl~Vr~EPDPRfVFQFdgep 179 (468)
-....+||..+|+. +..-|+ +-|=|+++||+|
T Consensus 167 ~~~~~~g~~p~g~~--------~~VT~a--~~~~I~eld~~P 198 (198)
T PF08495_consen 167 DSFVSHGWEPIGKP--------MTVTKA--EGNIIYELDGRP 198 (198)
T ss_pred EEEEecCeEeCCCC--------EEEEEe--cCCEEEEECCcC
Confidence 37788999999862 333344 889999999998
No 57
>PRK14284 chaperone protein DnaJ; Provisional
Probab=23.89 E-value=1.8e+02 Score=30.39 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=36.0
Q ss_pred EEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeecCCCceEEEeCCccccCceEEEeeCCeecceeeeeecc
Q 012226 125 VSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQGSVKQAVFTCKFGF 203 (468)
Q Consensus 125 v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG~~rQpvFtCKFs~ 203 (468)
++|.|..-+.++.-++|++- -..+. ..++...|+++|+++|+|.|- -+|. -.++.+.=++.+.+.=|++..
T Consensus 229 l~V~Ip~G~~~G~~i~~~g~-G~~~~-~~~~~GDL~v~i~v~~h~~F~--R~G~----DL~~~~~Isl~eAl~G~~~~v 299 (391)
T PRK14284 229 VHVHIPAGVDSGMRLKMEGY-GDAGQ-NGAPAGDLYVFIDVEPHPVFE--RRGD----DLILELPIGFVDAALGMKKEI 299 (391)
T ss_pred EEEEECCCCCCCCEEEEecc-ccCCC-CCCCCCCEEEEEEEecCCCce--eecC----CEEEEEEecHHHHhCCCeEEE
Confidence 34444444445555655532 11111 112345899999999999653 4442 233334334555555555443
No 58
>PRK14300 chaperone protein DnaJ; Provisional
Probab=23.70 E-value=2.2e+02 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=24.8
Q ss_pred ccEEEEEEeecCCCceEEEeCCccccCceEEEeeCCeecceeeeeecc
Q 012226 156 QAQLYLTVKSEPDPRFVFQFDGEPECSPQVFQVQGSVKQAVFTCKFGF 203 (468)
Q Consensus 156 ~aelhl~Vr~EPDPRfVFQFdgepecSPQV~QvqG~~rQpvFtCKFs~ 203 (468)
...|+++|+++|+|. |+=+|. -.++-+.=++.+.+.-+++..
T Consensus 245 ~GDL~v~i~v~~h~~--f~R~G~----Dl~~~~~Isl~~Al~G~~~~i 286 (372)
T PRK14300 245 SGDLYVDIAIKPHDI--YKVDGA----NLHCKLPISFVNAALGGEIEV 286 (372)
T ss_pred CCCEEEEEEECCCCC--eEEecC----CEEEEEecCHHHHhCCCEEEE
Confidence 458999999999996 445552 233333334555555554443
No 59
>PLN02352 phospholipase D epsilon
Probab=23.40 E-value=1.4e+02 Score=34.55 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCCcc--eEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeec-CCCCC-CCccEEEEEEe---ecCC
Q 012226 96 NSGVI--SLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGI-GENKK-GSQAQLYLTVK---SEPD 168 (468)
Q Consensus 96 ~~~~~--~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i-G~~~~-~~~aelhl~Vr---~EPD 168 (468)
|+..+ .+++.|=.| ..|||++.||+.- -..+... -+||..| +.++| -+++.||+.++ +|-|
T Consensus 68 ~ah~~~~~~~f~vk~~---------~~~ig~~~~p~~~-~~~g~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 68 CAHPLDSTITITLKTK---------CSILGRFHIQAHQ-IVTEASF--INGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred eeeecCCcEEEEEecC---------CeEEEEEEEEHHH-hhCCCcc--cceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 55555 588888773 4799999999962 2222221 5899998 33322 23589999987 4556
Q ss_pred Cce
Q 012226 169 PRF 171 (468)
Q Consensus 169 PRf 171 (468)
|-|
T Consensus 136 ~~~ 138 (758)
T PLN02352 136 PTW 138 (758)
T ss_pred cch
Confidence 543
No 60
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=23.30 E-value=4.3e+02 Score=31.36 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=57.6
Q ss_pred ceeeeccccC---CCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcccCCCee-E--E
Q 012226 50 EIATVPLVQD---ETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCVTTDKL-L--G 123 (468)
Q Consensus 50 qta~vPL~~~---~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG~~~kl-l--G 123 (468)
-|-++|+++. ...+.|+-+-+++-.-+-|.=+..+...+.. ..++| +.+ ..||...+. - =
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~dI~y~l~vtLEeLY~G~t---------KkIKi---tR~--V~~g~G~ktvkE~k 697 (871)
T TIGR03835 632 LTNQLPFISQPPASEYQEPNLDETNVNLVYEEEVPQILFFNNQI---------KEIKY---TRH--TVDGNTESTTNEAI 697 (871)
T ss_pred hccCCCcccCCccccccCCCccccccceEEecccCHHHHhCCCe---------EEEEE---EEe--eccCCCcceeeeeE
Confidence 4667888863 1224554456677777777666555555542 24443 211 113322121 1 2
Q ss_pred EEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeecCCCce
Q 012226 124 RVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPDPRF 171 (468)
Q Consensus 124 ~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPDPRf 171 (468)
++.|.|..-+.+|.-++|.+- |....+....|+++|++.|+|+|
T Consensus 698 tLeVkIPpGVkdGqkIRf~Ge----GDegpgg~GDLyVvIkVKPHp~F 741 (871)
T TIGR03835 698 TLEIQLPITSQLNISAIFKGF----GHDFGNGCGDLKVVFKVIPSNFF 741 (871)
T ss_pred EEEEecCCCCCCCCEEEeccc----cCCCCCCCCCEEEEEEEcCCCCe
Confidence 566777666666766777632 22111112589999999999973
No 61
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=23.10 E-value=4.4e+02 Score=23.62 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-C-CccCCCceEEecceeecCCCCCC--CccEEEEEE
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-L-RGAESRPSVIHNGWAGIGENKKG--SQAQLYLTV 163 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l-~~ae~kp~v~hnGWi~iG~~~~~--~~aelhl~V 163 (468)
..|+|+||.-... ..-....+||++.++|. + +...... +-.|..++|.... .+-+|+|.+
T Consensus 73 ~~L~v~V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~---~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGD---QELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCC-CCccCCceEEEEEEEHHHhcccccCCc---eEEEEECCcCCCCCcEEEEEEEEe
Confidence 3799999973221 11112579999999996 2 3333332 5567888875321 334665543
No 62
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=22.75 E-value=77 Score=28.73 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=14.8
Q ss_pred cEEEEEEeecCCCceEEEeCCcc
Q 012226 157 AQLYLTVKSEPDPRFVFQFDGEP 179 (468)
Q Consensus 157 aelhl~Vr~EPDPRfVFQFdgep 179 (468)
.++.++++- | .--||.||||
T Consensus 142 ~~i~i~~~~--~-~~~~QvDGEp 161 (161)
T PF00609_consen 142 RPIRIETKE--N-KVPFQVDGEP 161 (161)
T ss_pred CEEEEEECC--C-ceeEEeCCCC
Confidence 466666665 3 7889999998
No 63
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=22.69 E-value=5.8e+02 Score=26.91 Aligned_cols=112 Identities=13% Similarity=0.236 Sum_probs=72.4
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
.+-.++-+|++--.+|.++|=. ..| .-+.=-++-+|+..|+++=.. ..-+||..|+-...+
T Consensus 18 ~~~vv~a~~ng~~l~TDpv~~~-----~~p---~f~teL~WE~Dr~~l~~~r~~---------~tPiKl~c~a~~~~~-- 78 (340)
T PF12416_consen 18 HPIVVEAKFNGESLETDPVPHT-----ESP---QFNTELAWECDRKALKQHRLQ---------RTPIKLQCFAVDGST-- 78 (340)
T ss_pred ccEEEEEEeCCceeeecCCCCC-----CCc---eeecceeeeccHHHHHHhhcc---------CCceEEEEEEecCCC--
Confidence 3568888999988888844432 122 012234689999999988665 467999999865211
Q ss_pred cCCCeeEEEEEEeccCCcc---CCCceEEecceeec-CC--CCCCCccEEEEEEeecCCC
Q 012226 116 VTTDKLLGRVSVPLDLRGA---ESRPSVIHNGWAGI-GE--NKKGSQAQLYLTVKSEPDP 169 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~a---e~kp~v~hnGWi~i-G~--~~~~~~aelhl~Vr~EPDP 169 (468)
..+..+|-|-++| +.+ ..++...-.=|-.+ |. +-++-.+||-|.+.+|.|-
T Consensus 79 -~~re~iGyv~LdL--Rsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 -GKRESIGYVVLDL--RSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred -CcceeccEEEEEc--cccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 2666899887655 555 44433455668776 44 3333567888888887764
No 64
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=22.31 E-value=3.8e+02 Score=22.91 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=46.4
Q ss_pred CceeEEEecCCCC-----cceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCC
Q 012226 36 SSCYCKIKLKSFP-----DEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGS 110 (468)
Q Consensus 36 spC~CkIrL~~fP-----~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr 110 (468)
+-+|.|+.|..-+ .+|.. +. .+..|. -+-.-.|.++..+| . ...|+|.||.-.
T Consensus 37 ~dpyVkv~l~p~~~~~~~~kT~v---~~--~t~nP~---~nE~f~f~v~~~~l-----~---------~~~L~~~V~d~~ 94 (125)
T cd08393 37 SDPYVKTYLLPDKSNRGKRKTSV---KK--KTLNPV---FNETLRYKVEREEL-----P---------TRVLNLSVWHRD 94 (125)
T ss_pred CCcEEEEEEEcCCCccccccCcc---Cc--CCCCCc---cCceEEEECCHHHh-----C---------CCEEEEEEEeCC
Confidence 4569999985333 13332 21 122331 12234577777665 2 248999999854
Q ss_pred CCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeec
Q 012226 111 NGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 111 ~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 148 (468)
.. ....+||.+.++|. ++..+. +..|..+
T Consensus 95 ~~----~~~~~iG~~~i~L~~~~~~~~-----~~~W~~L 124 (125)
T cd08393 95 SL----GRNSFLGEVEVDLGSWDWSNT-----QPTWYPL 124 (125)
T ss_pred CC----CCCcEeEEEEEecCccccCCC-----CcceEEC
Confidence 32 24468999999995 344322 4557653
No 65
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=21.45 E-value=4.8e+02 Score=21.75 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=34.2
Q ss_pred eeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeec
Q 012226 73 AACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 73 Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 148 (468)
.-.|++...++ + ...|+|.||.-... ....+||.+.++|+ +...+ -++.|..+
T Consensus 69 ~f~f~v~~~~l-----~---------~~~l~i~V~d~~~~----~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l 122 (124)
T cd08387 69 SFVFEVPPQEL-----P---------KRTLEVLLYDFDQF----SRDECIGVVELPLAEVDLSE-----KLDLWRKI 122 (124)
T ss_pred EEEEeCCHHHh-----C---------CCEEEEEEEECCCC----CCCceeEEEEEecccccCCC-----CcceEEEC
Confidence 45577777665 1 24899999984321 24568999999995 44433 24668765
No 66
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=21.20 E-value=60 Score=32.10 Aligned_cols=60 Identities=22% Similarity=0.525 Sum_probs=34.7
Q ss_pred CCCeeEEEecCC-CCCcccccceeeccCCCCCccee-EEEEeccCC-C-CCCcee-eEee-eeeecCCCceEEEe
Q 012226 279 NPGAWLILRPGN-CTWKPWGRLEAWREPGNSDLLGY-RFDLLHDTI-S-SNSSST-TVAN-ANISSTKGGKFTID 347 (468)
Q Consensus 279 NPGAWLILRP~~-~sWkPWGRLEAWRErG~~d~lGy-RFeLl~d~~-~-~~~~~v-~~ae-s~is~~kGG~F~ID 347 (468)
.|.+|+|=|.|. .||+||.-.-+ | |+ .|.+..... . .|...| ...+ +.|....||+-...
T Consensus 111 RPa~~i~erSd~G~tW~p~qyfa~-------d--C~~~f~~~~~~~~~~~n~~~v~Ct~~ys~~~P~~~g~V~fs 176 (238)
T smart00136 111 RPSLWILERSDFGKTWQPWQYFSS-------D--CRRTFGRPPRGPITKGNEDEVICTSEYSDIVPLEGGEIAFS 176 (238)
T ss_pred CCceEEEeecCCCCCCcEeeeeec-------c--hhhhcCCCCCCCCCCCCCCccEECCCCCCCcCCCCCEEEEE
Confidence 578999999965 69999987641 1 33 255444321 0 011223 3222 45667788886544
No 67
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=21.09 E-value=1.4e+02 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=25.2
Q ss_pred EEEEEeecC----CCceEEEeCCccccCceEEEeeC
Q 012226 159 LYLTVKSEP----DPRFVFQFDGEPECSPQVFQVQG 190 (468)
Q Consensus 159 lhl~Vr~EP----DPRfVFQFdgepecSPQV~QvqG 190 (468)
+.|+|.+++ -++|.+.|+.||+-.=+|++.+|
T Consensus 22 ~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g 57 (105)
T TIGR02011 22 FGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKG 57 (105)
T ss_pred ceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCC
Confidence 345555554 77899999999999999999876
No 68
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=20.80 E-value=1.4e+02 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.1
Q ss_pred CccEEEEEEeecCCCceEEEeCCccc
Q 012226 155 SQAQLYLTVKSEPDPRFVFQFDGEPE 180 (468)
Q Consensus 155 ~~aelhl~Vr~EPDPRfVFQFdgepe 180 (468)
..+.|+-.+.-.|.|.+.+.++|+|-
T Consensus 2 ~~v~l~C~~~G~P~p~i~W~k~g~~i 27 (76)
T cd05867 2 ETARLDCQVEGIPTPNITWSINGAPI 27 (76)
T ss_pred CeEEEEEEeeEeCCCeEEEEECCEEC
Confidence 35788888999999999999999864
No 69
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=20.80 E-value=4.3e+02 Score=21.62 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCC--CCCCccEEEEEEee
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN--KKGSQAQLYLTVKS 165 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~--~~~~~aelhl~Vr~ 165 (468)
..|.|.||.-+.- ....+||++.++|+- -..+. ..|..|=.. .+....+|+|.+.+
T Consensus 61 ~~l~~~v~d~~~~----~~~~~iG~~~~~l~~-~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 61 DVLEVTVYDEDKD----KKPEFLGKVAIPLLS-IKNGE-----RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CEEEEEEEECCCC----CCCceeeEEEEEHHH-CCCCC-----ceEEECcccCCCCceeeEEEEEEEe
Confidence 3799999986541 144699999999852 22232 358887331 12246688887653
No 70
>PRK14298 chaperone protein DnaJ; Provisional
Probab=20.61 E-value=3e+02 Score=28.65 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=13.0
Q ss_pred ccEEEEEEeecCCCceE
Q 012226 156 QAQLYLTVKSEPDPRFV 172 (468)
Q Consensus 156 ~aelhl~Vr~EPDPRfV 172 (468)
.-.|+++|+++|+|+|-
T Consensus 245 ~GDL~i~i~v~~h~~F~ 261 (377)
T PRK14298 245 SGDLYIVLHVKEHDYFE 261 (377)
T ss_pred CcCEEEEEEEecCCCeE
Confidence 34789999999999643
No 71
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=20.08 E-value=3.3e+02 Score=22.06 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=36.4
Q ss_pred CccEEEEEEeecCCC-ceEEEeCCccc-----cCceEEEeeCCeecceeeeeec
Q 012226 155 SQAQLYLTVKSEPDP-RFVFQFDGEPE-----CSPQVFQVQGSVKQAVFTCKFG 202 (468)
Q Consensus 155 ~~aelhl~Vr~EPDP-RfVFQFdgepe-----cSPQV~QvqG~~rQpvFtCKFs 202 (468)
..+.|+-.+.-.|.| .+.+..||.|- -++-++.|++-...-+++|.=+
T Consensus 14 ~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~~d~g~Y~C~A~ 67 (81)
T cd05749 14 TPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLNETSKFSCEAH 67 (81)
T ss_pred CCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccccCCeEEEEEEE
Confidence 567899999999999 69999999864 2455677776655667888744
Done!