Query 012226
Match_columns 468
No_of_seqs 55 out of 57
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rlw_A Phospholipase A2, CALB 90.4 3.8 0.00013 32.5 11.0 99 36-168 27-126 (126)
2 2dmh_A Myoferlin; beta-sandwic 80.5 6.7 0.00023 31.7 7.8 104 36-169 27-135 (140)
3 3kwu_A MUNC13-1; calcium bindi 71.7 17 0.00059 29.6 8.1 62 100-167 77-147 (148)
4 3b7y_A E3 ubiquitin-protein li 66.8 31 0.001 28.2 8.6 64 100-167 86-153 (153)
5 3m7f_B E3 ubiquitin-protein li 65.5 23 0.00077 30.1 7.8 65 100-168 74-142 (176)
6 2d8k_A Synaptotagmin VII; exoc 64.0 46 0.0016 26.9 9.1 43 100-150 93-135 (141)
7 2r83_A Synaptotagmin-1; C2A-C2 61.3 91 0.0031 27.9 11.7 62 100-169 85-149 (284)
8 1wfj_A Putative elicitor-respo 53.9 9.2 0.00031 30.7 3.1 61 100-168 71-131 (136)
9 1gmi_A Protein kinase C, epsil 49.7 43 0.0015 27.1 6.5 56 100-167 77-133 (136)
10 2fk9_A Protein kinase C, ETA t 41.1 32 0.0011 30.0 4.8 55 100-166 99-156 (157)
11 1nlt_A Protein YDJ1, mitochond 39.4 49 0.0017 30.9 6.1 45 124-172 113-158 (248)
12 2ep6_A MCTP2 protein; beta san 39.3 37 0.0013 27.1 4.6 56 100-165 73-130 (133)
13 2b3r_A Phosphatidylinositol-4- 35.1 1.8E+02 0.0061 23.5 10.0 42 100-149 88-129 (134)
14 2y38_A Laminin subunit alpha-5 32.6 15 0.00051 37.4 1.5 22 279-300 132-155 (403)
15 1rsy_A Synaptotagmin I; calciu 32.0 2.1E+02 0.0071 23.4 9.8 87 36-149 63-149 (152)
16 4aqt_A Laminin subunit gamma-1 31.6 17 0.0006 36.4 1.8 21 279-299 125-147 (375)
17 4aqs_A Laminin subunit beta-1; 31.4 18 0.00061 36.6 1.8 21 279-299 127-149 (525)
18 2bwq_A Regulating synaptic mem 30.7 79 0.0027 24.8 5.2 42 100-148 87-128 (129)
19 3tbd_A Netrin-G2, laminet-2; l 30.6 19 0.00064 36.1 1.8 22 279-300 128-151 (338)
20 3zyj_B Netrin-G1; cell adhesio 29.9 19 0.00066 37.0 1.8 21 279-299 156-178 (426)
21 3l9b_A Otoferlin; C2-domain, b 29.7 57 0.002 29.2 4.6 59 99-167 79-140 (144)
22 4i21_C ERBB receptor feedback 28.1 10 0.00035 30.2 -0.5 19 165-192 40-58 (62)
23 1v27_A Regulating synaptic mem 23.0 2E+02 0.0069 22.7 6.3 45 100-151 90-134 (141)
24 1ugk_A Synaptotagmin IV, KIAA1 22.8 93 0.0032 24.9 4.3 43 100-150 90-133 (138)
No 1
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=90.42 E-value=3.8 Score=32.46 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=57.8
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|++.+-+.++..-..+.. +..| .-+-...|.+... . ...|+|.||.-...
T Consensus 27 ~dpyv~v~~~~~~~~~~kT~v~~~--t~nP---~wne~f~f~v~~~-------~---------~~~l~i~V~d~d~~--- 82 (126)
T 1rlw_A 27 PDPYVELFISTTPDSRKRTRHFNN--DINP---VWNETFEFILDPN-------Q---------ENVLEITLMDANYV--- 82 (126)
T ss_dssp CCEEEEEECTTSTTCCEECCCCTT--CSSC---EEEEEEEEEECTT-------S---------CCEEEEEEEECCSS---
T ss_pred CCCEEEEEEccCCCceEEccccCC--CCCC---cccceEEEEecCC-------C---------CCEEEEEEEECCCC---
Confidence 345999999976544433333322 2233 1122334444221 1 25899999986543
Q ss_pred cCCCeeEEEEEEecc-CCccCCCceEEecceeecCCCCCCCccEEEEEEeecCC
Q 012226 116 VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPD 168 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPD 168 (468)
+..+||.+.|+|. +. .+ .-|..|..+-+. ...++||.+...||
T Consensus 83 --~~~~iG~~~i~l~~l~--~~---~~~~~~~~L~~~---~~g~i~~~le~~~~ 126 (126)
T 1rlw_A 83 --MDETLGTATFTVSSMK--VG---EKKEVPFIFNQV---TEMVLEMSLEVASS 126 (126)
T ss_dssp --CCEEEEEEEEEGGGSC--TT---CEEEEEEEETTT---EEEEEEEEEECCCC
T ss_pred --CCceeEEEEEEHHHcc--CC---CcEEEEEEcCCC---ceEEEEEEEEeCCC
Confidence 3579999999996 32 22 256789999642 23466666555554
No 2
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.45 E-value=6.7 Score=31.65 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=60.2
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|++.+--.+|.. +.. +..| .-+-...|.+...++ .. ...|+|.||.-...
T Consensus 27 ~dpyv~v~~~~~~~kT~v---~~~--t~nP---~wne~f~f~v~~~~~----~~---------~~~l~i~V~d~d~~--- 82 (140)
T 2dmh_A 27 PDPIVSVIFKDEKKKTKK---VDN--ELNP---VWNEILEFDLRGIPL----DF---------SSSLGIIVKDFETI--- 82 (140)
T ss_dssp CCEEEEEECSSCEEECCC---CCS--CSSC---EEEEEEEEECSSCCC----CT---------TCEEEEEEEETTCS---
T ss_pred CCeEEEEEECCEeEEeee---ecC--CCCC---ccCcEEEEEeccccc----CC---------CCEEEEEEEECCCC---
Confidence 345999999864333332 311 2233 112233455543222 11 35899999985542
Q ss_pred cCCCeeEEEEEEecc-CCccCCCceEEecceee---c-CCCCCCCccEEEEEEeecCCC
Q 012226 116 VTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAG---I-GENKKGSQAQLYLTVKSEPDP 169 (468)
Q Consensus 116 G~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~---i-G~~~~~~~aelhl~Vr~EPDP 169 (468)
....+||.++|+|. +.... -+..|.. + ++.++....+|||.++..|.|
T Consensus 83 -~~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 83 -GQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp -SSCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred -CCCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence 24469999999996 32222 2456876 4 333333467999999988865
No 3
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=71.73 E-value=17 Score=29.56 Aligned_cols=62 Identities=13% Similarity=0.273 Sum_probs=40.9
Q ss_pred ceEEEEEEeCCCCC-----ccc--CCCeeEEEEEEeccCCccCCCceEEecceeecCCCC--CCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGM-----SCV--TTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK--KGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~-----~CG--~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~--~~~~aelhl~Vr~EP 167 (468)
..|+|.||.-.... ... ....+||.+.|+|+-- .. -...|..+-+.. .....+|||.+..|-
T Consensus 77 ~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~----~~~~w~~L~~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SG----EMDVWYNLDKRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CS----EEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC--cC----CCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence 47999999865420 000 2567999999999632 11 246899996532 124569999998875
No 4
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=66.75 E-value=31 Score=28.24 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=41.1
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCC-ceEEecceeecCCC--CCCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESR-PSVIHNGWAGIGEN--KKGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~k-p~v~hnGWi~iG~~--~~~~~aelhl~Vr~EP 167 (468)
..|+|.||.-..- ....+||.+.|+|. +...... -.-++..|..|... ++....+|||.+..-|
T Consensus 86 ~~l~~~V~d~d~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 86 HRLLFEVFDENRL----TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CEEEEEEEECCSS----SCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CEEEEEEEECCCC----cCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 4899999985432 24579999999996 3222211 02345689988542 2234679999987544
No 5
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=65.50 E-value=23 Score=30.09 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=39.2
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccC-CccCCC-ceEEecceeecCCC--CCCCccEEEEEEeecCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDL-RGAESR-PSVIHNGWAGIGEN--KKGSQAQLYLTVKSEPD 168 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl-~~ae~k-p~v~hnGWi~iG~~--~~~~~aelhl~Vr~EPD 168 (468)
..|+|.||.-... ....+||+++|+|.- ...... ...++-.|..+-.. +.....+|||.++.-|.
T Consensus 74 ~~L~~~V~d~d~~----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 74 HRILFEVFDENRL----TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEECC--------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CEEEEEEEECCCC----CCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 4899999985432 245799999999963 322221 12244579988542 22245699999987663
No 6
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.02 E-value=46 Score=26.87 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=29.5
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGE 150 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~ 150 (468)
..|+|.||.-.+. ....+||.+.|+|+- -..+. .+..|..|-.
T Consensus 93 ~~l~i~V~d~d~~----~~~~~iG~~~i~l~~-l~~~~---~~~~W~~L~~ 135 (141)
T 2d8k_A 93 RILYLQVLDYDRF----SRNDPIGEVSIPLNK-VDLTQ---MQTFWKDLKP 135 (141)
T ss_dssp SEEEEEEEECCSS----SSCEEEEEEEEETTT-SCTTS---CEEEEECCEE
T ss_pred CEEEEEEEECCCC----CCCcEEEEEEEEhhh-hcCCC---CccEEEECcC
Confidence 4899999985432 245799999999862 11222 3678998854
No 7
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=61.30 E-value=91 Score=27.89 Aligned_cols=62 Identities=13% Similarity=0.343 Sum_probs=39.7
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCC---CCCccEEEEEEeecCCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENK---KGSQAQLYLTVKSEPDP 169 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~---~~~~aelhl~Vr~EPDP 169 (468)
..|+|.||.-... ....+||.+.|+|+-- ..++ .+..|..+-... .....++++.++..|..
T Consensus 85 ~~l~~~V~d~d~~----~~~~~lG~~~i~l~~l-~~~~---~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~ 149 (284)
T 2r83_A 85 KTLVMAVYDFDRF----SKHDIIGEFKVPMNTV-DFGH---VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA 149 (284)
T ss_dssp CEEEEEEEECCSS----SCCCEEEEEEEEGGGC-CCSS---CEEEEEECBCCSSCCCCCCCEEEEEEEEETTT
T ss_pred CEEEEEEEECCCC----CCCceeEEEEEcchhc-ccCC---cceeEEEeeccccccccccccEEEEEEecCcC
Confidence 4899999985431 2457999999998631 1122 346799884321 12345888887766543
No 8
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=53.87 E-value=9.2 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.358 Sum_probs=41.6
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCCCCCCccEEEEEEeecCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEPD 168 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EPD 168 (468)
..|+|.||.-... ....+||.++|+|.--...+ ..+..|..|-++ +....+|||.++..|.
T Consensus 71 ~~l~~~V~d~~~~----~~d~~lG~~~i~l~~l~~~~---~~~~~w~~L~~~-~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 71 TELKAKIFDKDVG----TEDDAVGEATIPLEPVFVEG---SIPPTAYNVVKD-EEYKGEIWVALSFKPS 131 (136)
T ss_dssp CEEEEEECCSSSC----TTTCCSEEEEEESHHHHHHS---EEEEEEEEEEET-TEEEEEEEEEEEEEEC
T ss_pred CEEEEEEEECCCC----CCCceEEEEEEEHHHhccCC---CCCcEEEEeecC-CccCEEEEEEEEEEeC
Confidence 5899999985431 24579999999996211112 356789888532 2356799999988775
No 9
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=49.67 E-value=43 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.347 Sum_probs=37.8
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecCCCCCCCccEEEEEEeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGENKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~EP 167 (468)
..|+|.||.-..- ....+||+++|+|. +...... -+..|+.+- +..+|||.++.++
T Consensus 77 ~~L~~~V~d~d~~----~~dd~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 77 RKIELAVFHDAPI----GYDDFVANCTIQFEELLQNGSR---HFEDWIDLE-----PEGKVYVIIDLSG 133 (136)
T ss_dssp CEEEEEEEECCSS----SSCEEEEEEEEEHHHHTSTTCS---EEEEEEECB-----SSCEEEEEEEEEE
T ss_pred CEEEEEEEeCCCC----CCCCEEEEEEEEHHHhcccCCC---CccEEEEcC-----CCeEEEEEEEEEe
Confidence 4899999984431 24579999999995 3332221 246799874 3458999987653
No 10
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=41.11 E-value=32 Score=30.00 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=38.3
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCcc--CCCceEEecceeecCCCCCCCccEEEEEEeec
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGA--ESRPSVIHNGWAGIGENKKGSQAQLYLTVKSE 166 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~a--e~kp~v~hnGWi~iG~~~~~~~aelhl~Vr~E 166 (468)
..|+|.||.-..- ....+||++.|+|. +... ++ -.+..|+.+-. ..+|||.+..|
T Consensus 99 ~~L~~~V~D~d~~----~~dd~iG~~~i~l~~l~~~~~~~---~~~~~W~~L~~-----~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETPL----GYDHFVANCTLQFQELLRTTGAS---DTFEGWVDLEP-----EGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCSS----SSCEEEEEEEEEHHHHHHHHTTC---SEEEEEEECBS-----SCEEEEEEEEC
T ss_pred CEEEEEEEECCCC----CCCCEEEEEEEEHHHhhcccCCC---CcccEEEECCC-----CcEEEEEEEEE
Confidence 3899999984321 24569999999995 3222 22 24689999943 45999998875
No 11
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=39.43 E-value=49 Score=30.87 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=27.4
Q ss_pred EEEEeccCCccCCCceEEecceeecCCC-CCCCccEEEEEEeecCCCceE
Q 012226 124 RVSVPLDLRGAESRPSVIHNGWAGIGEN-KKGSQAQLYLTVKSEPDPRFV 172 (468)
Q Consensus 124 ~v~v~ldl~~ae~kp~v~hnGWi~iG~~-~~~~~aelhl~Vr~EPDPRfV 172 (468)
+++|.|..-+.++.-+.|.+- |.. ..++...|++.|+++|+|+|.
T Consensus 113 ~l~V~Ip~G~~~G~~ir~~g~----G~~~~~g~~GDl~v~i~v~~h~~F~ 158 (248)
T 1nlt_A 113 ILEVHVEPGMKDGQRIVFKGE----ADQAPDVIPGDVVFIVSERPHKSFK 158 (248)
T ss_dssp EEEEEECTTCCTTCEEEETTC----SCCCTTCBCCCEEEEEEECCCSSCE
T ss_pred EEEEEECCCccCCCEEEEeee----ecCCCCCCcceEEEEEEEecCccce
Confidence 455555555666665665421 221 112456899999999999854
No 12
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=39.27 E-value=37 Score=27.13 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=37.5
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCC--CCCCccEEEEEEee
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN--KKGSQAQLYLTVKS 165 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~--~~~~~aelhl~Vr~ 165 (468)
..|+|.||.-... ....+||.+.|+|.- -..+. ..|..+-.. .+....+|||.++.
T Consensus 73 ~~l~i~V~d~d~~----~~~~~lG~~~i~l~~-l~~~~-----~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 73 DVLEVTVFDEDGD----KPPDFLGKVAIPLLS-IRDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp CEEEEEEEEEETT----EEEEECCBCEEEGGG-CCSSC-----CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred CEEEEEEEECCCC----CCCCeeEEEEEEHHH-ccCCC-----ceEEEeecCCCCCccceEEEEEEEE
Confidence 4799999985432 245789999999962 12333 268887432 12356799999865
No 13
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=35.14 E-value=1.8e+02 Score=23.50 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=28.3
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIG 149 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG 149 (468)
..|+|.||.-..- ....+||++.|+|+-- ..+.+ +.+|..+-
T Consensus 88 ~~L~~~V~d~d~~----~~~~~lG~~~i~l~~l-~~~~~---~~~W~~L~ 129 (134)
T 2b3r_A 88 RELQLSVLSAESL----RENFFLGGITLPLKDF-NLSKE---TVKWYQLT 129 (134)
T ss_dssp CEEEEEEEECCSS----SCCEEEEEEEEEGGGS-CTTSC---EEEEEECB
T ss_pred CEEEEEEEECCCC----CCCcEEEEEEEEhhhc-cCCCC---cceeEECC
Confidence 4899999985431 2457999999999632 22222 46898874
No 14
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=32.64 E-value=15 Score=37.41 Aligned_cols=22 Identities=27% Similarity=0.839 Sum_probs=18.5
Q ss_pred CCCeeEEEecCC--CCCcccccce
Q 012226 279 NPGAWLILRPGN--CTWKPWGRLE 300 (468)
Q Consensus 279 NPGAWLILRP~~--~sWkPWGRLE 300 (468)
-|.+|+|-|-.+ .||+||.-+-
T Consensus 132 RP~~m~ierS~D~G~tW~p~qyfa 155 (403)
T 2y38_A 132 RPDLWVLERSTDFGHTYQPWQFFA 155 (403)
T ss_dssp CCSEEEEEEESSSSSSEEEEEEEC
T ss_pred CCCeEEEEeccCCCCCccceeccc
Confidence 589999999854 7999998763
No 15
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=32.05 E-value=2.1e+02 Score=23.38 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=48.1
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCCCCceeeEecCHHHHHHHhccCCCCCCCCCcceEEEEEEeCCCCCcc
Q 012226 36 SSCYCKIKLKSFPDEIATVPLVQDETTPANGNLSHSLAACFNLNKAQIDKILEKSKSPKSNSGVISLRVDVYTGSNGMSC 115 (468)
Q Consensus 36 spC~CkIrL~~fP~qta~vPL~~~~~~~~p~~~~~~~Aa~F~Ld~s~l~~l~~~~~~~~s~~~~~~L~v~Vy~Gr~G~~C 115 (468)
+-.||+|.|..-..++..-.++.. +..| .-+-...|.+...+| . ...|+|.||.-...
T Consensus 63 ~dpyv~v~~~~~~~~~~kT~v~~~--t~nP---~wne~f~f~v~~~~l----~----------~~~L~i~V~d~d~~--- 120 (152)
T 1rsy_A 63 SDPYVKVFLLPDKKKKFETKVHRK--TLNP---VFNEQFTFKVPYSEL----G----------GKTLVMAVYDFDRF--- 120 (152)
T ss_dssp CCEEEEEEEETTCCSCEECCCCTT--CSSC---EEEEEEEECCCHHHH----T----------TCEEEEEEEECCSS---
T ss_pred cCeEEEEEEEcCCCceEeccccCC--CCCC---cCcccEEEeecHHHc----C----------CCEEEEEEEECCCC---
Confidence 346999999522222222222311 2233 112244566666554 1 14899999985432
Q ss_pred cCCCeeEEEEEEeccCCccCCCceEEecceeecC
Q 012226 116 VTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIG 149 (468)
Q Consensus 116 G~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG 149 (468)
....+||++.|+|+- -..+. .+..|..+-
T Consensus 121 -~~~~~iG~~~i~l~~-l~~~~---~~~~W~~L~ 149 (152)
T 1rsy_A 121 -SKHDIIGEFKVPMNT-VDFGH---VTEEWRDLQ 149 (152)
T ss_dssp -SCCEEEEEEEEEGGG-CCCSS---CEEEEEECB
T ss_pred -CCCcEEEEEEEEchh-ccCCC---CcceEEECC
Confidence 245799999999962 11222 356788763
No 16
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=31.65 E-value=17 Score=36.36 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=17.3
Q ss_pred CCCeeEEEecCC--CCCcccccc
Q 012226 279 NPGAWLILRPGN--CTWKPWGRL 299 (468)
Q Consensus 279 NPGAWLILRP~~--~sWkPWGRL 299 (468)
-|.+|+|.|=.+ .||+||.-.
T Consensus 125 rP~~m~Iers~d~G~tw~p~qyf 147 (375)
T 4aqt_A 125 RPESFAIYKRTREDGPWIPYQYY 147 (375)
T ss_dssp CCSEEEEEEESSSSSCCEEEEEE
T ss_pred CCCcEEEEEecCCCCCccceeee
Confidence 499999999743 799999765
No 17
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=31.37 E-value=18 Score=36.59 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.0
Q ss_pred CCCeeEEEecCC--CCCcccccc
Q 012226 279 NPGAWLILRPGN--CTWKPWGRL 299 (468)
Q Consensus 279 NPGAWLILRP~~--~sWkPWGRL 299 (468)
-|++|+|-|=.+ .||+||.-.
T Consensus 127 rP~~~~ieks~d~g~tw~p~qy~ 149 (525)
T 4aqs_A 127 RPAAMLIERSSDFGKAWGVYRYF 149 (525)
T ss_dssp CCSEEEEEEESSTTSSCEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcceeee
Confidence 499999999854 799999876
No 18
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=30.71 E-value=79 Score=24.82 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=25.8
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeec
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGI 148 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i 148 (468)
..|+|.||.-..... ....+||.+.|+|+--..++ +.+|..+
T Consensus 87 ~~l~~~V~d~d~~~~--~~~~~lG~~~i~l~~l~~~~-----~~~W~~L 128 (129)
T 2bwq_A 87 RMLEITLWDQARVRE--EESEFLGEILIELETALLDD-----EPHWYKL 128 (129)
T ss_dssp CEEEEEEEEC---------CEEEEEEEEEGGGCCCSS-----CEEEEEC
T ss_pred CeEEEEEEECCcCcC--cCCceeEEEEEEccccCCCc-----CCccEEC
Confidence 489999998544211 12679999999996322222 6778764
No 19
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=30.58 E-value=19 Score=36.10 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCCeeEEEecCC--CCCcccccce
Q 012226 279 NPGAWLILRPGN--CTWKPWGRLE 300 (468)
Q Consensus 279 NPGAWLILRP~~--~sWkPWGRLE 300 (468)
-|++|+|-|--+ .||+||.-.-
T Consensus 128 RP~sm~ierS~D~G~tW~P~QYfA 151 (338)
T 3tbd_A 128 RPTVMVLEKSLDNGRTWQPYQFYA 151 (338)
T ss_dssp CCSEEEEEEESSTTSSCEEEEEEE
T ss_pred CCCeEEEEeccCCCCCceeehhhh
Confidence 499999999855 7999996553
No 20
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=29.87 E-value=19 Score=36.97 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=17.4
Q ss_pred CCCeeEEEecCC--CCCcccccc
Q 012226 279 NPGAWLILRPGN--CTWKPWGRL 299 (468)
Q Consensus 279 NPGAWLILRP~~--~sWkPWGRL 299 (468)
-|++|+|-|-.+ .||+||.-.
T Consensus 156 RP~am~ierS~D~G~tW~p~qYf 178 (426)
T 3zyj_B 156 RPDQMILEKSLDYGRTWQPYQYY 178 (426)
T ss_dssp CCSEEEEEEESSTTSSCEEEEEE
T ss_pred CCCeEEEEeccCCCCCceehHHH
Confidence 589999999855 799999644
No 21
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=29.66 E-value=57 Score=29.16 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=38.1
Q ss_pred cceEEEEEEe-CCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeec-CCCCCCCccEEEEEEeecC
Q 012226 99 VISLRVDVYT-GSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGI-GENKKGSQAQLYLTVKSEP 167 (468)
Q Consensus 99 ~~~L~v~Vy~-Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i-G~~~~~~~aelhl~Vr~EP 167 (468)
..+|+|.||. .+.| +.|+||+++|+|. +.... .+.+ +..| ..+++..+|++-|.|+-+|
T Consensus 79 ~e~L~v~V~d~~~v~-----~nrlIG~~~i~Lq~lv~~~--~l~l---~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 79 NEVLEIQIFNYSKVF-----SNKLIGTFRMVLQKVVEEN--RVEV---SDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp TCEEEEEEEEECTTS-----CCEEEEEEEEESHHHHHHS--EEEE---EEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEECcccc-----CCCEEEEEEEEhHHhccCC--eEEE---eecccCCCCCccccEEEEEEEecC
Confidence 3699999998 2223 6799999999994 33322 2333 2333 3333435689999888766
No 22
>4i21_C ERBB receptor feedback inhibitor 1; EGFR kinase domain, phosphotransfer, MIG6 peptide, ATP bindi transferase-transferase inhibitor complex; 3.37A {Homo sapiens} PDB: 2rf9_C
Probab=28.08 E-value=10 Score=30.18 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=10.2
Q ss_pred ecCCCceEEEeCCccccCceEEEeeCCe
Q 012226 165 SEPDPRFVFQFDGEPECSPQVFQVQGSV 192 (468)
Q Consensus 165 ~EPDPRfVFQFdgepecSPQV~QvqG~~ 192 (468)
.-+||.|| +|||+|-||+-
T Consensus 40 FA~dPkY~---------spkviq~q~se 58 (62)
T 4i21_C 40 FAPDPKYV---------SSKALQRQNSE 58 (62)
T ss_dssp CTTCTTTS---------CCCCC------
T ss_pred cccCcccc---------chhhhcccccc
Confidence 45788876 88999999864
No 23
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=23.02 E-value=2e+02 Score=22.67 Aligned_cols=45 Identities=11% Similarity=0.280 Sum_probs=30.0
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEeccCCccCCCceEEecceeecCCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLDLRGAESRPSVIHNGWAGIGEN 151 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG~~ 151 (468)
..|+|.||.-..... ....+||++.|+|+--..++ ...|..+-..
T Consensus 90 ~~l~i~V~d~d~~~~--~~~~~lG~~~i~l~~l~~~~-----~~~W~~L~~~ 134 (141)
T 1v27_A 90 RMLEITLWDQARVRE--EESEFLGEILIELETALLDD-----EPHWYKLQTH 134 (141)
T ss_dssp CEEEEEEEEBCSSSS--CCBCCCEEEEEEGGGCCCSS-----EEEEEECBCC
T ss_pred CEEEEEEEECCCCcC--CCCceEEEEEEEccccCCCC-----CCceEECccc
Confidence 489999998544211 12578999999996322222 5789998653
No 24
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=22.84 E-value=93 Score=24.92 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=28.0
Q ss_pred ceEEEEEEeCCCCCcccCCCeeEEEEEEecc-CCccCCCceEEecceeecCC
Q 012226 100 ISLRVDVYTGSNGMSCVTTDKLLGRVSVPLD-LRGAESRPSVIHNGWAGIGE 150 (468)
Q Consensus 100 ~~L~v~Vy~Gr~G~~CG~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG~ 150 (468)
..|+|.||.-... ....+||.+.|+|+ +....++ ..-|..+-+
T Consensus 90 ~~l~i~V~d~d~~----~~~~~lG~~~i~l~~l~~~~~~----~~~~~~l~~ 133 (138)
T 1ugk_A 90 LALHFTILSFDRF----SRDDIIGEVLIPLSGIELSEGK----MLMNREIIS 133 (138)
T ss_dssp CEEEEEEEEECSS----CCCCCCEEEEEECTTCCCTTCC----EEEEEECBS
T ss_pred CEEEEEEEECCCC----CCCcEEEEEEEehhHccCCCCc----chhhhhhhc
Confidence 4899999984431 24568999999996 3333332 145677754
Done!