Query 012227
Match_columns 468
No_of_seqs 347 out of 1907
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 00:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 5.6E-25 1.2E-29 205.1 26.5 213 210-435 1-230 (230)
2 KOG4441 Proteins containing BT 99.9 2.8E-20 6E-25 193.4 27.9 297 119-443 228-556 (571)
3 PHA02713 hypothetical protein; 99.9 7.8E-21 1.7E-25 198.2 23.3 233 183-442 274-542 (557)
4 PLN03215 ascorbic acid mannose 99.8 2E-17 4.4E-22 159.7 25.2 297 118-440 3-353 (373)
5 KOG4441 Proteins containing BT 99.8 1.2E-17 2.5E-22 173.9 22.4 200 225-449 301-515 (571)
6 PHA02713 hypothetical protein; 99.8 3.6E-17 7.9E-22 170.8 22.3 199 226-449 273-505 (557)
7 PHA03098 kelch-like protein; P 99.7 4E-16 8.6E-21 163.7 24.7 233 185-445 268-523 (534)
8 PHA02790 Kelch-like protein; P 99.7 6.1E-16 1.3E-20 159.3 23.4 195 213-441 270-478 (480)
9 TIGR03547 muta_rot_YjhT mutatr 99.7 2.1E-15 4.6E-20 149.5 26.4 221 210-448 13-313 (346)
10 PRK14131 N-acetylneuraminic ac 99.7 7.6E-15 1.6E-19 146.8 25.2 222 210-448 34-335 (376)
11 PLN02153 epithiospecifier prot 99.7 1.1E-14 2.3E-19 144.0 26.0 216 210-442 28-293 (341)
12 PHA02790 Kelch-like protein; P 99.6 2E-14 4.4E-19 148.0 19.3 183 183-388 289-477 (480)
13 PLN02193 nitrile-specifier pro 99.6 2.2E-13 4.7E-18 140.0 25.7 235 191-443 151-420 (470)
14 PHA03098 kelch-like protein; P 99.6 1.1E-13 2.5E-18 145.2 21.1 197 226-448 265-479 (534)
15 TIGR03548 mutarot_permut cycli 99.6 1.3E-12 2.7E-17 128.3 25.6 198 226-444 40-290 (323)
16 PLN02153 epithiospecifier prot 99.5 1.3E-12 2.9E-17 129.1 23.5 194 183-389 52-292 (341)
17 PRK14131 N-acetylneuraminic ac 99.5 8.1E-12 1.8E-16 125.1 26.3 243 171-439 40-374 (376)
18 TIGR03547 muta_rot_YjhT mutatr 99.5 4.1E-12 8.9E-17 126.0 23.8 211 183-420 31-329 (346)
19 PLN02193 nitrile-specifier pro 99.4 5.3E-11 1.1E-15 122.4 24.8 197 183-392 195-421 (470)
20 TIGR03548 mutarot_permut cycli 99.3 5E-11 1.1E-15 117.0 17.8 174 183-367 90-314 (323)
21 PF08268 FBA_3: F-box associat 99.2 9E-10 1.9E-14 92.7 15.0 110 309-418 1-118 (129)
22 PF07734 FBA_1: F-box associat 98.9 6.8E-08 1.5E-12 84.9 14.6 131 309-442 1-148 (164)
23 KOG4693 Uncharacterized conser 98.9 1.2E-07 2.6E-12 85.7 15.8 205 226-449 45-295 (392)
24 PF12937 F-box-like: F-box-lik 98.8 3.6E-09 7.7E-14 71.9 3.2 43 119-161 1-43 (47)
25 KOG4693 Uncharacterized conser 98.8 2.3E-07 5.1E-12 83.9 15.6 189 212-418 86-308 (392)
26 KOG0379 Kelch repeat-containin 98.7 9.6E-07 2.1E-11 91.0 18.8 201 226-444 89-312 (482)
27 PF00646 F-box: F-box domain; 98.6 1.7E-08 3.7E-13 69.0 2.5 44 118-161 2-45 (48)
28 KOG1230 Protein containing rep 98.5 1.9E-06 4.2E-11 82.6 14.3 199 226-440 99-347 (521)
29 smart00256 FBOX A Receptor for 98.5 6.8E-08 1.5E-12 63.4 3.1 39 122-160 1-39 (41)
30 KOG0379 Kelch repeat-containin 98.4 1.4E-05 3E-10 82.5 16.9 167 266-441 71-257 (482)
31 KOG0281 Beta-TrCP (transducin 98.0 0.00024 5.3E-09 66.8 14.9 43 118-160 74-120 (499)
32 KOG1230 Protein containing rep 97.9 0.0015 3.2E-08 63.3 18.2 159 276-443 99-290 (521)
33 COG3055 Uncharacterized protei 97.6 0.0021 4.5E-08 61.4 14.9 157 226-397 59-271 (381)
34 KOG2120 SCF ubiquitin ligase, 97.6 6.3E-05 1.4E-09 70.0 3.6 42 119-160 98-139 (419)
35 KOG4152 Host cell transcriptio 97.5 0.0027 5.7E-08 63.1 14.8 199 225-441 57-310 (830)
36 PF01344 Kelch_1: Kelch motif; 97.4 0.00089 1.9E-08 45.0 7.2 45 348-392 3-47 (47)
37 PF13964 Kelch_6: Kelch motif 97.0 0.00083 1.8E-08 45.9 3.8 45 349-393 4-48 (50)
38 PF13964 Kelch_6: Kelch motif 97.0 0.0019 4.1E-08 44.1 5.4 40 408-447 7-50 (50)
39 COG3055 Uncharacterized protei 96.9 0.024 5.1E-07 54.4 13.1 181 267-460 48-282 (381)
40 PF07646 Kelch_2: Kelch motif; 96.8 0.0021 4.7E-08 43.7 4.2 44 349-392 4-49 (49)
41 KOG0274 Cdc4 and related F-box 96.5 0.65 1.4E-05 48.6 21.8 45 116-160 105-149 (537)
42 PF07893 DUF1668: Protein of u 96.4 0.13 2.8E-06 50.8 15.7 128 312-447 75-221 (342)
43 PF01344 Kelch_1: Kelch motif; 96.2 0.01 2.2E-07 39.8 4.4 34 306-339 4-43 (47)
44 PF13418 Kelch_4: Galactose ox 96.1 0.016 3.6E-07 39.2 5.2 44 349-392 4-48 (49)
45 smart00612 Kelch Kelch domain. 95.8 0.019 4.1E-07 38.1 4.5 29 268-296 2-36 (47)
46 KOG2997 F-box protein FBX9 [Ge 95.8 0.005 1.1E-07 57.9 2.0 43 119-161 107-154 (366)
47 PF08450 SGL: SMP-30/Gluconola 95.6 0.77 1.7E-05 42.8 16.2 199 211-441 8-221 (246)
48 TIGR01640 F_box_assoc_1 F-box 95.3 2 4.3E-05 39.6 17.8 116 275-394 14-139 (230)
49 PF07250 Glyoxal_oxid_N: Glyox 95.2 0.31 6.8E-06 45.3 11.8 154 277-445 48-210 (243)
50 PF07646 Kelch_2: Kelch motif; 95.0 0.072 1.6E-06 36.0 5.3 34 306-339 4-45 (49)
51 PRK11138 outer membrane biogen 94.7 5.4 0.00012 40.2 20.5 191 213-439 159-359 (394)
52 COG4257 Vgb Streptogramin lyas 94.4 1 2.2E-05 42.1 12.3 120 210-345 195-318 (353)
53 PF05096 Glu_cyclase_2: Glutam 94.3 1.9 4.1E-05 40.4 14.3 165 276-463 69-241 (264)
54 KOG4152 Host cell transcriptio 94.2 1.1 2.4E-05 45.2 13.0 115 263-381 213-363 (830)
55 smart00612 Kelch Kelch domain. 94.1 0.13 2.9E-06 33.8 4.9 41 316-357 2-47 (47)
56 PF02191 OLF: Olfactomedin-lik 94.1 2.8 6.1E-05 39.3 15.3 127 307-446 72-215 (250)
57 PF13418 Kelch_4: Galactose ox 93.4 0.19 4.1E-06 33.8 4.7 33 412-444 12-48 (49)
58 smart00284 OLF Olfactomedin-li 93.3 2.8 6.1E-05 39.2 13.7 127 307-446 77-220 (255)
59 PTZ00421 coronin; Provisional 93.2 12 0.00026 39.0 22.8 154 267-440 140-297 (493)
60 KOG2437 Muskelin [Signal trans 92.9 0.22 4.8E-06 49.9 6.0 136 304-441 261-420 (723)
61 PF13415 Kelch_3: Galactose ox 92.8 0.22 4.7E-06 33.6 4.2 23 425-447 19-41 (49)
62 PF13360 PQQ_2: PQQ-like domai 92.6 8.1 0.00017 35.3 19.8 153 267-440 38-200 (238)
63 PF10282 Lactonase: Lactonase, 92.6 8.8 0.00019 37.8 17.1 123 314-445 156-289 (345)
64 PF13415 Kelch_3: Galactose ox 92.4 0.12 2.6E-06 34.9 2.6 40 356-395 1-41 (49)
65 PF13360 PQQ_2: PQQ-like domai 91.4 11 0.00024 34.4 19.8 184 213-439 35-236 (238)
66 COG4257 Vgb Streptogramin lyas 91.2 13 0.00029 34.9 16.7 216 186-442 88-314 (353)
67 PRK11138 outer membrane biogen 91.2 18 0.00039 36.3 23.5 182 212-437 118-316 (394)
68 PF08450 SGL: SMP-30/Gluconola 90.6 7.2 0.00016 36.2 13.5 111 313-440 11-129 (246)
69 PF07250 Glyoxal_oxid_N: Glyox 89.7 2.8 6E-05 39.0 9.5 145 226-394 47-211 (243)
70 PLN02772 guanylate kinase 89.6 2.3 5E-05 42.3 9.4 73 306-381 27-108 (398)
71 PF07893 DUF1668: Protein of u 89.5 23 0.0005 34.9 19.3 166 182-365 87-297 (342)
72 PTZ00420 coronin; Provisional 88.6 36 0.00078 36.1 23.5 156 266-443 139-303 (568)
73 KOG2437 Muskelin [Signal trans 88.0 1.2 2.6E-05 44.9 6.0 150 230-387 234-418 (723)
74 TIGR03300 assembly_YfgL outer 87.8 31 0.00067 34.3 20.1 101 213-338 64-171 (377)
75 PF02897 Peptidase_S9_N: Proly 86.8 37 0.00081 34.2 17.3 120 311-441 285-412 (414)
76 PF07762 DUF1618: Protein of u 86.5 8 0.00017 32.1 9.7 69 325-393 7-98 (131)
77 COG3386 Gluconolactonase [Carb 84.6 21 0.00047 34.5 12.8 116 313-442 36-160 (307)
78 PF13854 Kelch_5: Kelch motif 84.4 2.1 4.5E-05 27.7 4.0 36 345-380 3-39 (42)
79 PF05096 Glu_cyclase_2: Glutam 84.3 21 0.00046 33.5 12.1 104 312-435 54-159 (264)
80 KOG2055 WD40 repeat protein [G 83.6 18 0.00039 36.3 11.6 108 312-436 267-377 (514)
81 KOG0294 WD40 repeat-containing 79.6 60 0.0013 31.2 13.7 97 272-381 186-283 (362)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.1 48 0.001 34.9 14.1 119 307-439 63-195 (527)
83 KOG2055 WD40 repeat protein [G 79.0 77 0.0017 32.1 14.7 148 214-380 268-418 (514)
84 TIGR03300 assembly_YfgL outer 78.7 72 0.0016 31.6 22.3 185 211-436 102-300 (377)
85 KOG1310 WD40 repeat protein [G 78.0 9.6 0.00021 39.1 7.8 113 212-333 59-179 (758)
86 PF10282 Lactonase: Lactonase, 77.4 76 0.0017 31.2 21.7 117 314-441 204-332 (345)
87 KOG3545 Olfactomedin and relat 77.3 40 0.00086 31.3 11.0 123 307-441 71-210 (249)
88 KOG0316 Conserved WD40 repeat- 77.0 61 0.0013 29.9 15.6 109 212-341 26-140 (307)
89 KOG4341 F-box protein containi 76.8 1.7 3.7E-05 43.1 2.3 38 120-157 73-110 (483)
90 KOG0281 Beta-TrCP (transducin 75.1 30 0.00064 33.6 9.8 66 308-380 324-389 (499)
91 COG4946 Uncharacterized protei 70.9 1.3E+02 0.0028 30.8 15.8 68 313-389 370-439 (668)
92 PLN02772 guanylate kinase 70.1 24 0.00052 35.3 8.5 43 349-391 27-69 (398)
93 COG1520 FOG: WD40-like repeat 70.1 94 0.002 30.8 13.1 111 309-440 64-178 (370)
94 TIGR03074 PQQ_membr_DH membran 69.3 1.5E+02 0.0032 32.8 15.0 32 306-338 187-220 (764)
95 KOG0271 Notchless-like WD40 re 68.0 1.3E+02 0.0028 29.8 12.5 151 214-380 126-277 (480)
96 KOG0278 Serine/threonine kinas 67.2 1.1E+02 0.0024 28.6 14.8 141 222-387 162-307 (334)
97 PRK11028 6-phosphogluconolacto 67.2 1.2E+02 0.0027 29.2 26.3 120 315-445 188-318 (330)
98 KOG1332 Vesicle coat complex C 64.7 1.2E+02 0.0026 28.2 15.4 71 215-289 70-141 (299)
99 KOG0289 mRNA splicing factor [ 64.4 1.6E+02 0.0036 29.6 15.4 111 266-394 359-475 (506)
100 PLN02919 haloacid dehalogenase 63.6 2.8E+02 0.0062 32.0 24.1 220 210-442 575-842 (1057)
101 cd00216 PQQ_DH Dehydrogenases 63.2 1.2E+02 0.0026 31.5 12.6 119 307-439 55-189 (488)
102 PRK04792 tolB translocation pr 62.9 1.9E+02 0.004 29.7 17.1 146 276-442 243-391 (448)
103 KOG0279 G protein beta subunit 62.8 1.4E+02 0.0031 28.3 13.4 139 224-381 126-264 (315)
104 TIGR03866 PQQ_ABC_repeats PQQ- 62.5 1.3E+02 0.0029 27.9 21.7 101 218-335 4-106 (300)
105 PF12768 Rax2: Cortical protei 62.2 1.3E+02 0.0028 28.8 11.5 110 324-442 16-130 (281)
106 PF14870 PSII_BNR: Photosynthe 61.6 1.6E+02 0.0034 28.5 14.3 175 190-390 90-270 (302)
107 TIGR03866 PQQ_ABC_repeats PQQ- 61.2 1.2E+02 0.0027 28.0 11.6 103 315-436 2-106 (300)
108 KOG2502 Tub family proteins [G 61.2 4.1 8.9E-05 39.4 1.2 39 117-155 43-89 (355)
109 PF13013 F-box-like_2: F-box-l 60.6 7.5 0.00016 31.2 2.4 29 119-147 22-50 (109)
110 PLN00033 photosystem II stabil 60.4 2E+02 0.0042 29.1 16.4 68 312-389 290-364 (398)
111 PRK10115 protease 2; Provision 59.8 2.7E+02 0.0058 30.5 18.1 120 311-442 277-403 (686)
112 cd00216 PQQ_DH Dehydrogenases 58.7 2.3E+02 0.005 29.4 17.2 118 267-388 63-192 (488)
113 KOG0293 WD40 repeat-containing 58.3 2.1E+02 0.0045 28.8 12.8 180 226-440 292-477 (519)
114 cd01206 Homer Homer type EVH1 57.4 30 0.00064 27.7 5.1 40 226-273 12-52 (111)
115 PLN02919 haloacid dehalogenase 57.0 3.6E+02 0.0079 31.2 25.8 215 210-437 631-892 (1057)
116 KOG0286 G-protein beta subunit 56.4 1.9E+02 0.0041 27.7 15.2 136 225-380 77-218 (343)
117 PF09910 DUF2139: Uncharacteri 56.3 1.9E+02 0.0042 27.8 11.7 104 325-441 79-191 (339)
118 PRK04043 tolB translocation pr 56.0 1.9E+02 0.0042 29.3 12.4 104 324-441 213-317 (419)
119 COG2706 3-carboxymuconate cycl 55.3 2.1E+02 0.0046 28.0 21.8 218 228-455 69-298 (346)
120 COG4946 Uncharacterized protei 54.1 2.6E+02 0.0057 28.7 12.8 20 422-441 379-398 (668)
121 KOG0299 U3 snoRNP-associated p 53.9 2.5E+02 0.0055 28.4 17.1 31 210-240 209-239 (479)
122 PF12768 Rax2: Cortical protei 53.4 91 0.002 29.8 8.9 102 276-390 17-130 (281)
123 PF13570 PQQ_3: PQQ-like domai 52.4 26 0.00056 22.1 3.5 26 307-333 15-40 (40)
124 KOG4378 Nuclear protein COP1 [ 51.0 1.2E+02 0.0025 31.2 9.3 62 262-333 218-281 (673)
125 PF03178 CPSF_A: CPSF A subuni 50.9 1.9E+02 0.0042 27.9 11.2 77 350-442 92-168 (321)
126 KOG0303 Actin-binding protein 49.9 2.8E+02 0.006 27.7 14.9 152 271-441 150-304 (472)
127 KOG0310 Conserved WD40 repeat- 48.8 3.1E+02 0.0068 28.0 12.1 62 312-380 164-226 (487)
128 KOG0308 Conserved WD40 repeat- 48.5 3.7E+02 0.008 28.7 14.4 157 212-380 82-244 (735)
129 TIGR02800 propeller_TolB tol-p 47.2 3E+02 0.0066 27.4 20.8 146 276-442 215-363 (417)
130 PRK00178 tolB translocation pr 47.1 3.2E+02 0.0069 27.6 17.1 145 276-442 224-372 (430)
131 KOG1332 Vesicle coat complex C 46.8 2.5E+02 0.0054 26.2 11.0 121 263-391 173-297 (299)
132 KOG0646 WD40 repeat protein [G 46.7 3.3E+02 0.0072 27.7 12.5 23 264-286 187-209 (476)
133 PRK11028 6-phosphogluconolacto 46.0 2.8E+02 0.0061 26.7 26.0 118 313-441 136-268 (330)
134 PF03088 Str_synth: Strictosid 44.5 44 0.00096 25.7 4.3 38 411-448 8-61 (89)
135 PF06433 Me-amine-dh_H: Methyl 43.8 3.3E+02 0.0071 26.8 13.8 115 313-439 195-326 (342)
136 KOG0646 WD40 repeat protein [G 43.5 3.7E+02 0.0081 27.4 15.1 37 201-238 80-116 (476)
137 PF13859 BNR_3: BNR repeat-lik 43.4 63 0.0014 31.4 6.2 87 307-396 124-221 (310)
138 PF09372 PRANC: PRANC domain; 42.1 25 0.00055 27.4 2.8 25 117-141 70-94 (97)
139 KOG0289 mRNA splicing factor [ 42.1 3.9E+02 0.0083 27.1 16.9 111 213-340 357-470 (506)
140 KOG0266 WD40 repeat-containing 40.6 4.2E+02 0.0092 27.2 18.4 150 210-381 210-366 (456)
141 KOG0292 Vesicle coat complex C 40.5 5.7E+02 0.012 28.7 14.2 98 308-440 254-355 (1202)
142 PRK04043 tolB translocation pr 38.8 4.4E+02 0.0094 26.8 22.5 190 224-442 212-409 (419)
143 TIGR03032 conserved hypothetic 38.7 1.3E+02 0.0029 29.2 7.3 56 307-366 206-261 (335)
144 KOG0645 WD40 repeat protein [G 37.9 3.6E+02 0.0078 25.6 20.2 159 215-393 27-193 (312)
145 KOG0647 mRNA export protein (c 37.7 3.8E+02 0.0083 25.8 12.4 32 212-243 81-112 (347)
146 KOG0291 WD40-repeat-containing 37.7 5.8E+02 0.013 27.9 19.6 158 210-392 357-518 (893)
147 PF02239 Cytochrom_D1: Cytochr 37.3 4.3E+02 0.0093 26.3 16.2 195 216-440 7-209 (369)
148 smart00564 PQQ beta-propeller 36.5 90 0.0019 18.2 4.5 25 412-439 6-30 (33)
149 COG1520 FOG: WD40-like repeat 36.4 4.3E+02 0.0093 26.0 16.1 148 266-440 69-224 (370)
150 PRK04922 tolB translocation pr 36.0 4.8E+02 0.01 26.4 19.9 146 276-442 229-377 (433)
151 KOG4499 Ca2+-binding protein R 35.7 3.7E+02 0.008 25.1 11.0 117 314-444 170-299 (310)
152 PF03478 DUF295: Protein of un 35.7 51 0.0011 22.5 3.1 22 411-432 31-54 (54)
153 KOG1273 WD40 repeat protein [G 34.9 4.4E+02 0.0094 25.6 15.3 27 210-236 72-98 (405)
154 PRK13684 Ycf48-like protein; P 34.4 4.5E+02 0.0098 25.7 16.4 69 312-389 224-296 (334)
155 cd00260 Sialidase Sialidases o 34.4 3.9E+02 0.0085 26.0 10.6 81 309-391 151-241 (351)
156 KOG0271 Notchless-like WD40 re 34.3 4.9E+02 0.011 26.0 11.2 138 218-377 339-479 (480)
157 PRK04792 tolB translocation pr 34.1 5.3E+02 0.011 26.4 22.1 187 224-441 241-433 (448)
158 PTZ00334 trans-sialidase; Prov 33.8 1.4E+02 0.0031 32.8 7.5 85 308-395 264-357 (780)
159 PF13919 ASXH: Asx homology do 31.4 28 0.00062 29.3 1.5 47 113-159 38-104 (138)
160 TIGR03075 PQQ_enz_alc_DH PQQ-d 30.7 6.6E+02 0.014 26.4 22.3 116 214-342 69-201 (527)
161 PF01011 PQQ: PQQ enzyme repea 30.7 1.4E+02 0.0029 18.5 4.3 25 413-440 1-25 (38)
162 PF12217 End_beta_propel: Cata 30.6 2.1E+02 0.0047 26.8 7.0 55 311-365 198-258 (367)
163 PRK05137 tolB translocation pr 30.4 5.9E+02 0.013 25.8 21.0 187 225-441 182-374 (435)
164 PF02191 OLF: Olfactomedin-lik 30.4 4.6E+02 0.0099 24.5 15.0 136 213-362 77-236 (250)
165 KOG0291 WD40-repeat-containing 30.3 7.6E+02 0.017 27.1 14.7 97 266-380 362-467 (893)
166 cd01207 Ena-Vasp Enabled-VASP- 29.2 2.7E+02 0.0059 22.4 6.7 42 226-272 10-51 (111)
167 KOG0305 Anaphase promoting com 28.3 6.9E+02 0.015 26.0 13.0 104 212-334 186-290 (484)
168 PF03022 MRJP: Major royal jel 27.5 5.5E+02 0.012 24.5 9.9 67 374-444 35-108 (287)
169 KOG0315 G-protein beta subunit 27.3 5.3E+02 0.011 24.3 16.5 197 213-439 93-294 (311)
170 KOG0316 Conserved WD40 repeat- 27.2 5.2E+02 0.011 24.1 15.5 99 224-338 80-179 (307)
171 PLN03215 ascorbic acid mannose 26.2 6.7E+02 0.015 25.1 10.7 29 333-364 189-217 (373)
172 PF08268 FBA_3: F-box associat 25.9 1.2E+02 0.0025 24.9 4.4 31 412-442 5-37 (129)
173 TIGR02276 beta_rpt_yvtn 40-res 25.7 1.5E+02 0.0033 18.2 4.0 25 313-337 3-27 (42)
174 KOG1445 Tumor-specific antigen 25.0 4.6E+02 0.0099 28.1 8.9 54 324-377 742-796 (1012)
175 PF07569 Hira: TUP1-like enhan 24.8 3.6E+02 0.0078 24.6 7.7 33 408-443 73-105 (219)
176 PF12458 DUF3686: ATPase invol 24.8 4.9E+02 0.011 26.4 8.8 137 210-377 234-382 (448)
177 KOG0313 Microtubule binding pr 24.3 2.8E+02 0.0061 27.5 6.9 63 219-285 316-378 (423)
178 PF14870 PSII_BNR: Photosynthe 24.1 6.6E+02 0.014 24.3 13.5 71 312-390 70-141 (302)
179 PRK03629 tolB translocation pr 23.9 7.7E+02 0.017 25.0 21.7 144 276-442 224-372 (429)
180 KOG0310 Conserved WD40 repeat- 23.7 8.1E+02 0.018 25.2 14.3 138 226-387 49-191 (487)
181 KOG2048 WD40 repeat protein [G 23.3 9.5E+02 0.021 25.8 13.8 120 210-339 390-512 (691)
182 COG5469 Predicted metal-bindin 23.2 21 0.00045 29.6 -0.7 22 118-139 118-139 (143)
183 KOG4649 PQQ (pyrrolo-quinoline 23.0 6.6E+02 0.014 23.8 13.8 21 412-435 333-353 (354)
184 KOG1539 WD repeat protein [Gen 22.8 1.1E+03 0.023 26.3 12.6 96 266-380 214-319 (910)
185 KOG3669 Uncharacterized conser 22.8 7.4E+02 0.016 26.2 9.8 63 277-343 210-272 (705)
186 KOG0266 WD40 repeat-containing 22.7 8.4E+02 0.018 25.0 16.6 66 213-286 256-321 (456)
187 KOG1520 Predicted alkaloid syn 22.5 7.8E+02 0.017 24.6 10.4 26 423-448 197-223 (376)
188 PTZ00420 coronin; Provisional 22.1 9.8E+02 0.021 25.5 11.7 114 213-339 177-300 (568)
189 COG3823 Glutamine cyclotransfe 22.1 6.2E+02 0.013 23.2 9.5 50 276-333 69-120 (262)
190 KOG0639 Transducin-like enhanc 21.4 4.3E+02 0.0094 27.3 7.8 64 314-381 430-497 (705)
191 smart00135 LY Low-density lipo 20.8 1.9E+02 0.004 17.7 3.7 22 312-333 19-40 (43)
192 PLN00181 protein SPA1-RELATED; 20.8 1.2E+03 0.025 25.9 21.7 196 211-436 541-741 (793)
193 KOG0283 WD40 repeat-containing 20.4 1.1E+03 0.025 25.7 11.1 74 202-285 461-534 (712)
194 TIGR02658 TTQ_MADH_Hv methylam 20.1 8.6E+02 0.019 24.1 13.6 108 324-439 27-142 (352)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.94 E-value=5.6e-25 Score=205.14 Aligned_cols=213 Identities=20% Similarity=0.324 Sum_probs=151.8
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC--CcceeEEEEEEcCCCCCCCeEEEEEEec------CcEEEEe
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK--VWSRVAVGMTLNGNSTSSGYKILWVGCD------GEYEIYD 281 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~d~~~~~~~ykVv~v~~~------~~v~vy~ 281 (468)
+++||||||+... ..++||||+|++++.||+++.. ......+++++| +.+++|||+.+... ..++||+
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d--~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYD--PIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeec--ccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 4789999999865 5799999999999999976432 111225788999 67899999998753 2489999
Q ss_pred CCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCC-----eEEEEECCCCeEEE-eecCCCCC--CCCceEE
Q 012227 282 SLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPE-----GIVSYNMVTGVWKQ-FIIPTPLH--LNDHTLA 353 (468)
Q Consensus 282 s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~-----~i~~fD~~~~~w~~-i~~P~p~~--~~~~~l~ 353 (468)
+++++|+.+...+... .. ...++++||.+||++.... .|++||+.+++|+. +++|.... .....|+
T Consensus 77 ~~~~~Wr~~~~~~~~~-----~~-~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 77 LGSNSWRTIECSPPHH-----PL-KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI 150 (230)
T ss_pred eCCCCccccccCCCCc-----cc-cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence 9999999987433211 11 2238999999999985321 79999999999995 66654322 2246789
Q ss_pred EECCeEEEEEEEeeCCccEEEEEEEecC-CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 354 ECGGRIMLVGLLTKNAATCVCIWELQKM-TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 354 ~~~G~L~lv~~~~~~~~~~i~Vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
+++|+|+++..... ...++||+|+++ ..+|++..+++.....++... ....++.++|.|++.........+..||+
T Consensus 151 ~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~~g~I~~~~~~~~~~~~~~y~~ 227 (230)
T TIGR01640 151 NYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTDKGEIVLCCEDENPFYIFYYNV 227 (230)
T ss_pred EECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEeeCCEEEEEeCCCCceEEEEEec
Confidence 99999999876432 245999999865 567999988874322222211 22345566788877654322334999999
Q ss_pred CCC
Q 012227 433 MSR 435 (468)
Q Consensus 433 ~t~ 435 (468)
+++
T Consensus 228 ~~~ 230 (230)
T TIGR01640 228 GEN 230 (230)
T ss_pred cCC
Confidence 875
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=193.43 Aligned_cols=297 Identities=18% Similarity=0.246 Sum_probs=203.4
Q ss_pred hccChHHHHHHHHhcCChh----hHHHHhhcccchhhhccCcchhhhhhcCC--CCCCEEEEEeeCC-----CCCcceec
Q 012227 119 WKEFPEDLYEAVIARLPIA----TFFRFRSVCQKWNSLLKSHSFSQHCAQVP--QGIPWFYTITHEN-----VNSGAMYD 187 (468)
Q Consensus 119 w~~LP~DLl~~IL~RLp~~----~l~r~r~VCK~Wr~li~s~~F~~~~~~~~--~~~p~l~~~~~~~-----~~~~~~~d 187 (468)
.+-||...+.++....+.. .....-.-.|.|..+-.........+..+ ....-++.+.... ......||
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 3667777777777776621 11111122224444433221111111111 1123345444322 12366899
Q ss_pred CCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCC------ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCC
Q 012227 188 PSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGH------RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNS 261 (468)
Q Consensus 188 p~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~ 261 (468)
|.++.|..+ ..+|..+....+++.+|.|++.++.. +.+++|||.+++|..+|++...+.. ++++.-
T Consensus 308 ~~~~~w~~~--a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~---~~v~~l--- 379 (571)
T KOG4441|consen 308 PKTNEWSSL--APMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD---FGVAVL--- 379 (571)
T ss_pred CCcCcEeec--CCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc---ceeEEE---
Confidence 999999754 34444433445888899998886543 4689999999999999998665543 222221
Q ss_pred CCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeEEEE
Q 012227 262 TSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSY 329 (468)
Q Consensus 262 ~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~f 329 (468)
+.+||++||.. .+|.||+.++.|..+++|+.. +....++.++|+||.+++. -..+.+|
T Consensus 380 ---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 380 ---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred ---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-------eeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence 26899999854 399999999999999988753 3456778899999999872 2579999
Q ss_pred ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227 330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL 409 (468)
Q Consensus 330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~ 409 (468)
|+.+++|+.+ .||+..+....+++.+|+||++++... ....-.|-.+|+.+++|+.+..|...... ..++
T Consensus 450 DP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~--------~g~~ 519 (571)
T KOG4441|consen 450 DPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSA--------VGVV 519 (571)
T ss_pred cCCCCceeec-CCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCcccccc--------ccEE
Confidence 9999999997 788888888889999999999999765 22222466779999999999888765432 4456
Q ss_pred ecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCC
Q 012227 410 GNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGC 443 (468)
Q Consensus 410 ~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~ 443 (468)
..++.||+..+.. ....+.+||+++++|+.+..+
T Consensus 520 ~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 520 VLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred EECCEEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence 6689998854322 346799999999999999873
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.87 E-value=7.8e-21 Score=198.24 Aligned_cols=233 Identities=15% Similarity=0.190 Sum_probs=170.4
Q ss_pred cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcceeEEEEE
Q 012227 183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMT 256 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~ 256 (468)
...||+..++|..+ +.+|.......++..+|.|++.++. ...++++||.+++|..+|+++..+.... +..
T Consensus 274 v~~yd~~~~~W~~l--~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~ 349 (557)
T PHA02713 274 ILVYNINTMEYSVI--STIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAV 349 (557)
T ss_pred EEEEeCCCCeEEEC--CCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEE
Confidence 35799999999854 3344332222366677877776553 1458999999999999999876554332 222
Q ss_pred EcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-------
Q 012227 257 LNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------- 323 (468)
Q Consensus 257 ~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------- 323 (468)
.+ .+||++||.. .+++||+.+++|+.++.||... ....++.++|+||++++..
T Consensus 350 ~~-------g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-------~~~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 350 ID-------DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-------SSYGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred EC-------CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-------ccccEEEECCEEEEEeCCCccccccc
Confidence 33 5899998853 3999999999999999887653 2355778999999998632
Q ss_pred ----------------CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCC-CCeE
Q 012227 324 ----------------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMT-LLWK 386 (468)
Q Consensus 324 ----------------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~-~~W~ 386 (468)
..+.+||+.+++|+.+ .|++..+....+++++|+||++|+........-.|.++|+.+ ++|+
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 3588999999999987 677777777889999999999998643211112467789988 7999
Q ss_pred EEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 387 EVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 387 ~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
.+..||..+.. ..++..+|.||+..+......+.+||+.+++|+.+..
T Consensus 495 ~~~~m~~~r~~--------~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 495 LITTTESRLSA--------LHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EccccCccccc--------ceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 99999876543 3344558999985433223468999999999998865
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.80 E-value=2e-17 Score=159.74 Aligned_cols=297 Identities=17% Similarity=0.225 Sum_probs=170.0
Q ss_pred hhccChHHHHHHHHhcCCh-hhHHHHhhcccchhhhccCcchhhhhhcCCCCCCEEEEEeeCCCCCcceecCCCCcccCC
Q 012227 118 IWKEFPEDLYEAVIARLPI-ATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHP 196 (468)
Q Consensus 118 ~w~~LP~DLl~~IL~RLp~-~~l~r~r~VCK~Wr~li~s~~F~~~~~~~~~~~p~l~~~~~~~~~~~~~~dp~~~~w~~~ 196 (468)
.|++||+|||..|..|||. .|++|||+|||+||+.+.... ..... ++.||++...-.........|+...+- ..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPF-RTRPLILFNPINPSETLTDDRSYISRP-GA 77 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCc-ccccccccCcccCCCCccccccccccc-cc
Confidence 4999999999999999976 599999999999999876421 01111 223555432200000000111111110 00
Q ss_pred CCCCCCCCcEE--EEeeecCceEEEEEc--CCceEEEEcCCCCceEecCCCCcCCc--------ceeEE-----------
Q 012227 197 TISSLPTKMII--LPVASAGGLVCFLDI--GHRNFYVCNPLTQSFKELPARSVKVW--------SRVAV----------- 253 (468)
Q Consensus 197 ~l~~~p~~~~~--~~~~s~~GLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~--------~~~~~----------- 253 (468)
.+. +...+. .+.++..|||.-.+. ..+++.+.||+++.-..+|+...... ..+.+
T Consensus 78 ~ls--~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~~~~ 155 (373)
T PLN03215 78 FLS--RAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRETRP 155 (373)
T ss_pred eee--eeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccccccc
Confidence 010 111111 112456788776543 34679999999999777776321100 00001
Q ss_pred -----EEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEE
Q 012227 254 -----GMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVS 328 (468)
Q Consensus 254 -----~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~ 328 (468)
++.........+|-|++++..+.+..+. .+.|+.++.+.. .....++++|++|++... +.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~~~~~---------~~~DIi~~kGkfYAvD~~-G~l~~ 223 (373)
T PLN03215 156 GYQRSALVKVKEGDNHRDGVLGIGRDGKINYWD--GNVLKALKQMGY---------HFSDIIVHKGQTYALDSI-GIVYW 223 (373)
T ss_pred ceeEEEEEEeecCCCcceEEEEEeecCcEeeec--CCeeeEccCCCc---------eeeEEEEECCEEEEEcCC-CeEEE
Confidence 1111000111234566666555555555 589998864322 246788999999999653 46777
Q ss_pred EECCCCeEEEeecCC------CCCCCCceEEEECCeEEEEEEEeeC-------------CccEEEEEEEecCCCCeEEEE
Q 012227 329 YNMVTGVWKQFIIPT------PLHLNDHTLAECGGRIMLVGLLTKN-------------AATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 329 fD~~~~~w~~i~~P~------p~~~~~~~l~~~~G~L~lv~~~~~~-------------~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
+|.+-+ -..+..+. .......++|++.|+|++|...... ....++||++|....+|+++.
T Consensus 224 i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~ 302 (373)
T PLN03215 224 INSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVK 302 (373)
T ss_pred EecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEec
Confidence 774321 12221111 1112346799999999999985321 135799999998889999999
Q ss_pred eeChhhhhcccCcceEEEEE-----e-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 390 RMPNIWCLDFYGKHVRMTCL-----G-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~-----~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
+|++... |.|......+. + .+|.||+.. .....+||++.++...+
T Consensus 303 sLgd~aL--FlG~~~s~sv~a~e~pG~k~NcIYFtd----d~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 303 TLGDNAF--VMATDTCFSVLAHEFYGCLPNSIYFTE----DTMPKVFKLDNGNGSSI 353 (373)
T ss_pred ccCCeEE--EEECCccEEEecCCCCCccCCEEEEEC----CCcceEEECCCCCccce
Confidence 9987632 12211111111 1 479999853 24577999999986555
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=173.90 Aligned_cols=200 Identities=21% Similarity=0.280 Sum_probs=154.8
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-c------EEEEeCCCCCccCCCCCCCCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-E------YEIYDSLRNSWTRPGSMPSNI 297 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-~------v~vy~s~t~~W~~~~~~p~~~ 297 (468)
..+..+||.+++|..+.+++.++.. ..+++ .+ .+||++||.. + +++||+.+++|+.+++|...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~-~~~~~-~~-------~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~- 370 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCR-VGVAV-LN-------GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK- 370 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccc-ccEEE-EC-------CEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-
Confidence 4578999999999999998765542 22222 12 3899998855 2 89999999999999988765
Q ss_pred ccCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccE
Q 012227 298 KLPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATC 372 (468)
Q Consensus 298 ~~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~ 372 (468)
+.....+.++|.||++++.. ..++.||+.+++|..+ .|++..+.....++.+|+||++++........
T Consensus 371 ------R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 371 ------RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred ------cccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 33566778999999999732 4699999999999987 77877778888999999999999976532222
Q ss_pred EEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEEccCCccCCCC
Q 012227 373 VCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLKVPGCVVPRGR 449 (468)
Q Consensus 373 i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~v~~~~~~~~~ 449 (468)
-.|-.+|+.+++|+.+..|+..+.. +.++..+|.||+..+... ...+..||+++++|+.+..+..+++.
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~--------~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSG--------FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred ceEEEEcCCCCceeecCCccccccc--------ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 3455669999999999999876543 345556899998544322 34589999999999999888877753
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.77 E-value=3.6e-17 Score=170.79 Aligned_cols=199 Identities=13% Similarity=0.153 Sum_probs=148.6
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcc
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIK 298 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~ 298 (468)
.+..+||.+++|..+++++..+.... ++ ..+ .+|+++||.. .+++||+.++.|..++.|+..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~-~a-~l~-------~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R- 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYA-SA-IVD-------NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR- 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceE-EE-EEC-------CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-
Confidence 57899999999999998866543222 22 223 4899998742 3899999999999998887542
Q ss_pred cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC----
Q 012227 299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA---- 369 (468)
Q Consensus 299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~---- 369 (468)
....++.++|+||++|+.. ..+.+||+.+++|..+ .|+|.......+++++|+||++|+.....
T Consensus 343 ------~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 343 ------CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred ------hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCccccccc
Confidence 2456778999999999742 3589999999999987 67787777778889999999999864210
Q ss_pred -------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC----CCeEEEEEC
Q 012227 370 -------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ----MNRLVTYNV 432 (468)
Q Consensus 370 -------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~----~~~l~~YD~ 432 (468)
...-.|.++|+.+++|+.+..|+..... ..++..+|.||+..+... ...+.+||+
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--------~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--------PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCccccc--------CcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence 0123577889999999999999765432 223445789988543211 134789999
Q ss_pred CC-CcEEEccCCccCCCC
Q 012227 433 MS-REWLKVPGCVVPRGR 449 (468)
Q Consensus 433 ~t-~~w~~v~~~~~~~~~ 449 (468)
++ ++|+.++.+|.++..
T Consensus 488 ~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 488 NTYNGWELITTTESRLSA 505 (557)
T ss_pred CCCCCeeEccccCccccc
Confidence 99 899999999887753
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.74 E-value=4e-16 Score=163.72 Aligned_cols=233 Identities=11% Similarity=0.134 Sum_probs=159.9
Q ss_pred eecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEc
Q 012227 185 MYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLN 258 (468)
Q Consensus 185 ~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d 258 (468)
.|++..++|..+ +..+...... .+..++.|++.++. ...++++||.|++|..+|+++.++.....+ ..+
T Consensus 268 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~ 342 (534)
T PHA03098 268 TNYSPLSEINTI--IDIHYVYCFG-SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFN 342 (534)
T ss_pred ecchhhhhcccc--cCccccccce-EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EEC
Confidence 466667777643 2223221112 44456666555432 136899999999999999876554332222 223
Q ss_pred CCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeE
Q 012227 259 GNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGI 326 (468)
Q Consensus 259 ~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i 326 (468)
.+|+++||.. .+++||+.+++|+..+.+|... ....++.++|++|++++. ...+
T Consensus 343 -------~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-------~~~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 343 -------NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-------YNPCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred -------CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-------ccceEEEECCEEEEECCcCCCCcccceE
Confidence 4799998753 3899999999999988877542 245567789999999872 1468
Q ss_pred EEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc--cEEEEEEEecCCCCeEEEEeeChhhhhcccCcce
Q 012227 327 VSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA--TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHV 404 (468)
Q Consensus 327 ~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~--~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~ 404 (468)
..||+.+++|..+ .|+|..+.....+..+|+||++++...... ..-.+|.+|..+++|+++..++.....
T Consensus 409 ~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~------- 480 (534)
T PHA03098 409 ECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN------- 480 (534)
T ss_pred EEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-------
Confidence 9999999999987 566766666778889999999998653211 122488899999999999877644321
Q ss_pred EEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCcc
Q 012227 405 RMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVV 445 (468)
Q Consensus 405 ~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~ 445 (468)
..++..+|.||+..+.. ....+.+||+++++|+.++..|-
T Consensus 481 -~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 481 -ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred -ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 11222378888743321 13579999999999999987653
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.73 E-value=6.1e-16 Score=159.27 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=143.1
Q ss_pred cCceEEEEEcC-----CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCC
Q 012227 213 AGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLR 284 (468)
Q Consensus 213 ~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t 284 (468)
.++.|++.++. ...++.|||.+++|..+|+++.++.... +...+ .+|+++||. ..++.||+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~--~v~~~-------~~iYviGG~~~~~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS--GVPAN-------NKLYVVGGLPNPTSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce--EEEEC-------CEEEEECCcCCCCceEEEECCC
Confidence 45666555432 2358899999999999999865543322 22233 589999885 3499999999
Q ss_pred CCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC---CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEE
Q 012227 285 NSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP---EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIML 361 (468)
Q Consensus 285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~---~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~l 361 (468)
++|..+++|+..+ ....++.++|+||++|+.. ..+..||+.+++|+.+ .|++..+....+++.+|+||+
T Consensus 341 n~W~~~~~l~~~r-------~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~IYv 412 (480)
T PHA02790 341 AAWVNMPSLLKPR-------CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRRLFL 412 (480)
T ss_pred CeEEECCCCCCCC-------cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEEEECCEEEE
Confidence 9999998887542 2456778999999998732 4588999999999987 567666666778899999999
Q ss_pred EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEE
Q 012227 362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWL 438 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~ 438 (468)
+|+. .++ +++.+++|+.+..|+..... ..++..+|.||+..+.. ....+.+||+++++|+
T Consensus 413 ~GG~-------~e~--ydp~~~~W~~~~~m~~~r~~--------~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 413 VGRN-------AEF--YCESSNTWTLIDDPIYPRDN--------PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred ECCc-------eEE--ecCCCCcEeEcCCCCCCccc--------cEEEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 9852 244 57778999999988754432 23444578998854321 1356899999999998
Q ss_pred Ecc
Q 012227 439 KVP 441 (468)
Q Consensus 439 ~v~ 441 (468)
...
T Consensus 476 ~~~ 478 (480)
T PHA02790 476 IWD 478 (480)
T ss_pred ecC
Confidence 653
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.73 E-value=2.1e-15 Score=149.47 Aligned_cols=221 Identities=15% Similarity=0.201 Sum_probs=145.2
Q ss_pred eeecCceEEEEEcC-CceEEEEcC--CCCceEecCCCCc-CCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227 210 VASAGGLVCFLDIG-HRNFYVCNP--LTQSFKELPARSV-KVWSRVAVGMTLNGNSTSSGYKILWVGCD----------- 274 (468)
Q Consensus 210 ~~s~~GLl~~~~~~-~~~~~V~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------- 274 (468)
.+..++-|++.++. ...++++|+ .+++|..+|+++. .+.... + ...+ -+|+++|+.
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~-~~~~-------~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV-A-AAID-------GKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce-E-EEEC-------CEEEEEeCCCCCCCCCccee
Confidence 44557777775443 356888885 7889999998763 332221 2 2233 489999874
Q ss_pred -CcEEEEeCCCCCccCCCC-CCCCcccCcccccccceE-EECCEEEEEEcCC----------------------------
Q 012227 275 -GEYEIYDSLRNSWTRPGS-MPSNIKLPVSLNFRSQAV-SVDGILYFMRSDP---------------------------- 323 (468)
Q Consensus 275 -~~v~vy~s~t~~W~~~~~-~p~~~~~~~~~~~~~~~v-~~~G~lY~~~~~~---------------------------- 323 (468)
..+++||+.+++|+.++. +|.. +....++ .++|+||++++..
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~-------~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVG-------LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCc-------ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 138999999999999863 2322 1122234 5899999998632
Q ss_pred -----------CeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEEE--EecCCCCeEEEE
Q 012227 324 -----------EGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIWE--LQKMTLLWKEVD 389 (468)
Q Consensus 324 -----------~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~--ld~~~~~W~~v~ 389 (468)
..+.+||+.+++|+.+ .|+|. .+....++.++|+||++++.........++|. +++.+++|+++.
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 4689999999999987 45664 45566788899999999987543223334544 455678999999
Q ss_pred eeChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------------------CCeEEEEECCCCcEEEccCCccCCC
Q 012227 390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------------------MNRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------------------~~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
.||........+. ....++..+|.||+..+... ...+.+||+++++|+.++.+|.++.
T Consensus 236 ~m~~~r~~~~~~~-~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~ 313 (346)
T TIGR03547 236 PLPPPKSSSQEGL-AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA 313 (346)
T ss_pred CCCCCCCCccccc-cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce
Confidence 9975432100000 01223335788887543210 0257899999999999998887653
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.69 E-value=7.6e-15 Score=146.85 Aligned_cols=222 Identities=16% Similarity=0.148 Sum_probs=143.3
Q ss_pred eeecCceEEEEEc-CCceEEEEcCC--CCceEecCCCCc-CCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227 210 VASAGGLVCFLDI-GHRNFYVCNPL--TQSFKELPARSV-KVWSRVAVGMTLNGNSTSSGYKILWVGCD----------- 274 (468)
Q Consensus 210 ~~s~~GLl~~~~~-~~~~~~V~NP~--T~~~~~LP~~~~-~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------- 274 (468)
.+..++-|++..+ ....++++|+. +++|..+++++. .+.. ..+ ...+ -+|+++|+.
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~-~~~-v~~~-------~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ-AVA-AFID-------GKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc-ceE-EEEC-------CEEEEEcCCCCCCCCCceeE
Confidence 5556777776543 33467888875 578999998653 2222 111 2223 478888863
Q ss_pred -CcEEEEeCCCCCccCCCCC-CCCcccCcccccccceEE-ECCEEEEEEcCC----------------------------
Q 012227 275 -GEYEIYDSLRNSWTRPGSM-PSNIKLPVSLNFRSQAVS-VDGILYFMRSDP---------------------------- 323 (468)
Q Consensus 275 -~~v~vy~s~t~~W~~~~~~-p~~~~~~~~~~~~~~~v~-~~G~lY~~~~~~---------------------------- 323 (468)
..+++||+.+++|+.++.+ |.. ...+.++. .+|+||++++..
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~-------~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVG-------LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCc-------ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 2388999999999998642 221 11233444 799999998732
Q ss_pred -----------CeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEE--EEecCCCCeEEEE
Q 012227 324 -----------EGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIW--ELQKMTLLWKEVD 389 (468)
Q Consensus 324 -----------~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw--~ld~~~~~W~~v~ 389 (468)
..+.+||+.+++|..+ .|+|. ......++.++++||++++.........++| ++++.+++|+++.
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 3589999999999987 35554 4555677888999999998654333344555 4566678999999
Q ss_pred eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCC--------------------CeEEEEECCCCcEEEccCCccCCC
Q 012227 390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQM--------------------NRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~--------------------~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
.||...............++..++.||+..+.... ..+.+||+++++|+.++.+|.++.
T Consensus 257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~ 335 (376)
T PRK14131 257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA 335 (376)
T ss_pred CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence 98764321100000011123346788875432100 135689999999999998887764
No 11
>PLN02153 epithiospecifier protein
Probab=99.69 E-value=1.1e-14 Score=144.03 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=140.5
Q ss_pred eeecCceEEEEEcC-------CceEEEEcCCCCceEecCCCC-cCCcceeEEEE-EEcCCCCCCCeEEEEEEec------
Q 012227 210 VASAGGLVCFLDIG-------HRNFYVCNPLTQSFKELPARS-VKVWSRVAVGM-TLNGNSTSSGYKILWVGCD------ 274 (468)
Q Consensus 210 ~~s~~GLl~~~~~~-------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~-~~d~~~~~~~ykVv~v~~~------ 274 (468)
++..++.|++.++. ...++++|+.+++|..++++. .++......++ ..+ -+|+++|+.
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-------~~iyv~GG~~~~~~~ 100 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-------TKLYIFGGRDEKREF 100 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-------CEEEEECCCCCCCcc
Confidence 44556777665432 136899999999999988753 22221111222 222 489988874
Q ss_pred CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-----------CeEEEEECCCCeEEEeecCC
Q 012227 275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-----------EGIVSYNMVTGVWKQFIIPT 343 (468)
Q Consensus 275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-----------~~i~~fD~~~~~w~~i~~P~ 343 (468)
..+++||+.+++|+.++.++... .|. .+..+.++..+++||++++.. ..+.+||+.+++|..++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~-~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEG-GPE-ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCC-CCC-CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 24899999999999887652210 111 123455677899999998631 24889999999999864321
Q ss_pred --CCCCCCceEEEECCeEEEEEEEeeC-------CccEEEEEEEecCCCCeEEEEee---ChhhhhcccCcceEEEEEec
Q 012227 344 --PLHLNDHTLAECGGRIMLVGLLTKN-------AATCVCIWELQKMTLLWKEVDRM---PNIWCLDFYGKHVRMTCLGN 411 (468)
Q Consensus 344 --p~~~~~~~l~~~~G~L~lv~~~~~~-------~~~~i~Vw~ld~~~~~W~~v~~m---p~~~~~~~~~~~~~~~~~~~ 411 (468)
+..+....++.++|+||++++.... ....-+|+.+|..+++|+++..+ |.... ...++..
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~--------~~~~~~~ 250 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS--------VFAHAVV 250 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc--------eeeeEEE
Confidence 2344556678899999999875310 01123688889989999998753 32221 1234445
Q ss_pred CCEEEEEeeeC------------CCCeEEEEECCCCcEEEccC
Q 012227 412 KGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 412 ~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~ 442 (468)
++.||+..+.. ..+.+++||+++++|+.+..
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 68888754321 12368999999999999964
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.62 E-value=2e-14 Score=148.01 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=134.9
Q ss_pred cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC--CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCC
Q 012227 183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG--HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGN 260 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~ 260 (468)
...|||..++|..++ .++........+..+|.|++.++. ...+..|||.+++|..+|+++..+.... +...+
T Consensus 289 v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~--~~~~~-- 362 (480)
T PHA02790 289 AIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPA--VASIN-- 362 (480)
T ss_pred EEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccE--EEEEC--
Confidence 457999999998643 333332222256678888877653 2458899999999999999876554322 22333
Q ss_pred CCCCCeEEEEEEecC----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE
Q 012227 261 STSSGYKILWVGCDG----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW 336 (468)
Q Consensus 261 ~~~~~ykVv~v~~~~----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w 336 (468)
.+|+++||.. .+++||+.+++|+.++.|+... ....++.++|+||++++ ...+||+.+++|
T Consensus 363 -----g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 363 -----NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVFGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred -----CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEECCEEEEECC---ceEEecCCCCcE
Confidence 5899998743 3899999999999998877542 23456779999999985 478899999999
Q ss_pred EEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227 337 KQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV 388 (468)
Q Consensus 337 ~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v 388 (468)
+.+ .|++..+....+++.+|+||++|+..... ..-.|..+|+.+++|+..
T Consensus 428 ~~~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 428 TLI-DDPIYPRDNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred eEc-CCCCCCccccEEEEECCEEEEECCcCCCc-ccceEEEEECCCCeEEec
Confidence 987 56777777788999999999999865321 123466779889999753
No 13
>PLN02193 nitrile-specifier protein
Probab=99.61 E-value=2.2e-13 Score=140.01 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=147.8
Q ss_pred CcccCCCCC-CCCCCcEEEEeeecCceEEEEEcC-------CceEEEEcCCCCceEecCCCC-cCCcceeEEEE-EEcCC
Q 012227 191 KKWHHPTIS-SLPTKMIILPVASAGGLVCFLDIG-------HRNFYVCNPLTQSFKELPARS-VKVWSRVAVGM-TLNGN 260 (468)
Q Consensus 191 ~~w~~~~l~-~~p~~~~~~~~~s~~GLl~~~~~~-------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~-~~d~~ 260 (468)
.+|..++.. ..|..+....++..++.|++.++. ...++++|+.+++|..+|+.. .+...+...++ ..+
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-- 228 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-- 228 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--
Confidence 688865432 123222111134445555555332 135899999999999887641 22111111222 222
Q ss_pred CCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-----CeEEEE
Q 012227 261 STSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSY 329 (468)
Q Consensus 261 ~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~f 329 (468)
-+|+++++. ..+++||+.+++|+.++.+... |. .+..+.++.++++||++++.. ..+.+|
T Consensus 229 -----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~---P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 229 -----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG---PT-PRSFHSMAADEENVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred -----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC---CC-CccceEEEEECCEEEEECCCCCCCCcceEEEE
Confidence 478888874 2489999999999988765311 11 123455677899999998632 358899
Q ss_pred ECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEE
Q 012227 330 NMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT 407 (468)
Q Consensus 330 D~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~ 407 (468)
|+.+++|+.+..| ++..+....++..+|+||++++... ...-++|++|..+++|+++..++...... ....
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g--~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-----~~~~ 372 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG--CEVDDVHYYDPVQDKWTQVETFGVRPSER-----SVFA 372 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--CccCceEEEECCCCEEEEeccCCCCCCCc-----ceeE
Confidence 9999999987543 2334455677888999999987542 12347889999999999987663211110 0123
Q ss_pred EEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccCC
Q 012227 408 CLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPGC 443 (468)
Q Consensus 408 ~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~~ 443 (468)
++..++.||+..+.. ..+.+++||+.+++|++++..
T Consensus 373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence 344567887743321 113589999999999999754
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.58 E-value=1.1e-13 Score=145.18 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=141.8
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcc
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIK 298 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~ 298 (468)
.+..+|+.+++|..+++.+... .. .+...+ .+|+++||.. .+..||+.+++|..++.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-------~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-- 332 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY--CF-GSVVLN-------NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-- 332 (534)
T ss_pred eeeecchhhhhcccccCccccc--cc-eEEEEC-------CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--
Confidence 4566899999999887654221 11 122233 4788888742 388999999999998887643
Q ss_pred cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEE
Q 012227 299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCV 373 (468)
Q Consensus 299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i 373 (468)
+.....+.++|++|++|+.. ..+..||+.+++|+.+ .|+|..+.....+.++|+||++|+........-
T Consensus 333 -----R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 333 -----RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLK 406 (534)
T ss_pred -----cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEEECCEEEEECCcCCCCcccc
Confidence 22456778899999999732 3588999999999986 566666677778889999999998644322234
Q ss_pred EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC------CCeEEEEECCCCcEEEccCCccCC
Q 012227 374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ------MNRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~------~~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
.++++|..+++|+.+..||..... ..++..++.||+..+... ...+++||+++++|+.++.++.++
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 478 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYG--------GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR 478 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccC--------ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc
Confidence 678889888999999888755432 223445788887543211 235899999999999999887766
Q ss_pred C
Q 012227 448 G 448 (468)
Q Consensus 448 ~ 448 (468)
.
T Consensus 479 ~ 479 (534)
T PHA03098 479 I 479 (534)
T ss_pred c
Confidence 4
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.57 E-value=1.3e-12 Score=128.29 Aligned_cols=198 Identities=12% Similarity=0.116 Sum_probs=130.5
Q ss_pred eEEEE-cCCCC-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCc----cCCCCC
Q 012227 226 NFYVC-NPLTQ-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSW----TRPGSM 293 (468)
Q Consensus 226 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W----~~~~~~ 293 (468)
.++++ ++..+ +|..+++++.++.... +..++ -+|+++|+.. .++.||..++.| +.++.+
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~--~~~~~-------~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGA--SVSVE-------NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL 110 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceE--EEEEC-------CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC
Confidence 46666 45433 7999988765543222 22233 3788888742 488999999888 566666
Q ss_pred CCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEee
Q 012227 294 PSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTK 367 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~ 367 (468)
|... ....+++++|+||++++. ...+.+||+.+++|+.+. ++|. .+....++..+|+||++++...
T Consensus 111 p~~~-------~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iYv~GG~~~ 182 (323)
T TIGR03548 111 PFTF-------ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-DFPGEPRVQPVCVKLQNELYVFGGGSN 182 (323)
T ss_pred CcCc-------cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-CCCCCCCCcceEEEECCEEEEEcCCCC
Confidence 6442 235567789999999873 246899999999999873 3442 3445666789999999998542
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC------------------------
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ------------------------ 423 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~------------------------ 423 (468)
....+++++|..+++|+++..|+........ .....++..++.||+..+...
T Consensus 183 --~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (323)
T TIGR03548 183 --IAYTDGYKYSPKKNQWQKVADPTTDSEPISL--LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKE 258 (323)
T ss_pred --ccccceEEEecCCCeeEECCCCCCCCCceec--cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHH
Confidence 1234678899999999998876421110000 001123334678877432210
Q ss_pred -----------CCeEEEEECCCCcEEEccCCc
Q 012227 424 -----------MNRLVTYNVMSREWLKVPGCV 444 (468)
Q Consensus 424 -----------~~~l~~YD~~t~~w~~v~~~~ 444 (468)
...+++||+.+++|+.++.+|
T Consensus 259 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 259 YFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred HhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 246999999999999998776
No 16
>PLN02153 epithiospecifier protein
Probab=99.54 E-value=1.3e-12 Score=129.08 Aligned_cols=194 Identities=13% Similarity=0.192 Sum_probs=128.1
Q ss_pred cceecCCCCcccCCCC-CCCCCCc-EEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCC-----CcCCcce
Q 012227 183 GAMYDPSLKKWHHPTI-SSLPTKM-IILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPAR-----SVKVWSR 250 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l-~~~p~~~-~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~-----~~~~~~~ 250 (468)
...||+..++|...+. ...|... ....+++.++.|++.++. ...++++||.|++|..++++ +..+...
T Consensus 52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~ 131 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH 131 (341)
T ss_pred EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee
Confidence 5579999999986542 2233221 112255667777666542 13689999999999999875 2222211
Q ss_pred eEEEEEEcCCCCCCCeEEEEEEecC------------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEE
Q 012227 251 VAVGMTLNGNSTSSGYKILWVGCDG------------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYF 318 (468)
Q Consensus 251 ~~~~~~~d~~~~~~~ykVv~v~~~~------------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~ 318 (468)
.+...+ -+|+++|+.. .+++||+.+++|+.++.+.... ..+.....+.++|++|+
T Consensus 132 --~~~~~~-------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~----~~r~~~~~~~~~~~iyv 198 (341)
T PLN02153 132 --SMASDE-------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF----EKRGGAGFAVVQGKIWV 198 (341)
T ss_pred --EEEEEC-------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC----CCCCcceEEEECCeEEE
Confidence 112222 4788887731 3889999999999887653211 11223456778999999
Q ss_pred EEcC-------------CCeEEEEECCCCeEEEeec--CCCCCCCCceEEEECCeEEEEEEEeeC--------CccEEEE
Q 012227 319 MRSD-------------PEGIVSYNMVTGVWKQFII--PTPLHLNDHTLAECGGRIMLVGLLTKN--------AATCVCI 375 (468)
Q Consensus 319 ~~~~-------------~~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~~G~L~lv~~~~~~--------~~~~i~V 375 (468)
+++. ...+.+||+.+++|..+.. .+|..+.....+.++++||++++.... ....-+|
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v 278 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEG 278 (341)
T ss_pred EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccE
Confidence 8642 1458999999999998742 134444556678889999999986321 1122389
Q ss_pred EEEecCCCCeEEEE
Q 012227 376 WELQKMTLLWKEVD 389 (468)
Q Consensus 376 w~ld~~~~~W~~v~ 389 (468)
|+||..+++|+++.
T Consensus 279 ~~~d~~~~~W~~~~ 292 (341)
T PLN02153 279 YALDTETLVWEKLG 292 (341)
T ss_pred EEEEcCccEEEecc
Confidence 99999999999986
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.51 E-value=8.1e-12 Score=125.06 Aligned_cols=243 Identities=15% Similarity=0.137 Sum_probs=148.5
Q ss_pred EEEEEeeCCCCCcceecCC--CCcccCCC-CCCCCCCcEEEEeeecCceEEEEEcCC-----------ceEEEEcCCCCc
Q 012227 171 WFYTITHENVNSGAMYDPS--LKKWHHPT-ISSLPTKMIILPVASAGGLVCFLDIGH-----------RNFYVCNPLTQS 236 (468)
Q Consensus 171 ~l~~~~~~~~~~~~~~dp~--~~~w~~~~-l~~~p~~~~~~~~~s~~GLl~~~~~~~-----------~~~~V~NP~T~~ 236 (468)
.+|++..........||.. .++|..++ +|..+.. ...++..+|.|++.++.. ..+++|||.+++
T Consensus 40 ~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~--~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 40 TVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE--QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred EEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc--cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 3444433322334466764 46787543 2222222 222566778777765421 358899999999
Q ss_pred eEecCCC-CcCCcceeEEEEE-EcCCCCCCCeEEEEEEec----------------------------------------
Q 012227 237 FKELPAR-SVKVWSRVAVGMT-LNGNSTSSGYKILWVGCD---------------------------------------- 274 (468)
Q Consensus 237 ~~~LP~~-~~~~~~~~~~~~~-~d~~~~~~~ykVv~v~~~---------------------------------------- 274 (468)
|..++++ +...... .+.. .+ -+|+++|+.
T Consensus 118 W~~~~~~~p~~~~~~--~~~~~~~-------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (376)
T PRK14131 118 WQKLDTRSPVGLAGH--VAVSLHN-------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFN 188 (376)
T ss_pred EEeCCCCCCCcccce--EEEEeeC-------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcC
Confidence 9999863 2222111 2222 23 588988873
Q ss_pred CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------C--eEEEEECCCCeEEEeecCCCCC
Q 012227 275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------E--GIVSYNMVTGVWKQFIIPTPLH 346 (468)
Q Consensus 275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~--~i~~fD~~~~~w~~i~~P~p~~ 346 (468)
..+++||+.+++|+.++.+|... +.....+.++++||++++.. . ....||+++++|..+ .++|..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~p~~ 261 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-PDLPPA 261 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-CCCCCC
Confidence 24899999999999988776421 12345677899999998621 1 234568889999987 345432
Q ss_pred CC--------CceEEEECCeEEEEEEEeeCC----------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCc
Q 012227 347 LN--------DHTLAECGGRIMLVGLLTKNA----------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK 402 (468)
Q Consensus 347 ~~--------~~~l~~~~G~L~lv~~~~~~~----------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~ 402 (468)
+. ....+..+|+||++++..... .....+..++..+++|+.+..||..+..
T Consensus 262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~----- 336 (376)
T PRK14131 262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY----- 336 (376)
T ss_pred CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-----
Confidence 21 122467899999999864211 0011233456667899999988865432
Q ss_pred ceEEEEEecCCEEEEEeeeC----CCCeEEEEECCCCcEEE
Q 012227 403 HVRMTCLGNKGLLMLSLRSR----QMNRLVTYNVMSREWLK 439 (468)
Q Consensus 403 ~~~~~~~~~~~~I~~~~~~~----~~~~l~~YD~~t~~w~~ 439 (468)
..++..+|.||+..+.. ....+.+|+++.+.+..
T Consensus 337 ---~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 337 ---GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ---eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 23455678888854422 22478899999887764
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.51 E-value=4.1e-12 Score=125.96 Aligned_cols=211 Identities=17% Similarity=0.172 Sum_probs=132.4
Q ss_pred cceecC--CCCcccCCCCCCCCC-CcEEEEeeecCceEEEEEcCC-----------ceEEEEcCCCCceEecCCCCcCCc
Q 012227 183 GAMYDP--SLKKWHHPTISSLPT-KMIILPVASAGGLVCFLDIGH-----------RNFYVCNPLTQSFKELPARSVKVW 248 (468)
Q Consensus 183 ~~~~dp--~~~~w~~~~l~~~p~-~~~~~~~~s~~GLl~~~~~~~-----------~~~~V~NP~T~~~~~LP~~~~~~~ 248 (468)
...||+ ..++|..+ +.+|. .+....+++.+|-|++.++.. ..+++|||.+++|..++.+ .++.
T Consensus 31 ~~~~d~~~~~~~W~~l--~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~p~~ 107 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-SPVG 107 (346)
T ss_pred eEEEECCCCCCCceEC--CCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-CCCc
Confidence 445664 56788754 33331 222223667788887776431 3588999999999999742 2221
Q ss_pred ceeEEEE-EEcCCCCCCCeEEEEEEec----------------------------------------CcEEEEeCCCCCc
Q 012227 249 SRVAVGM-TLNGNSTSSGYKILWVGCD----------------------------------------GEYEIYDSLRNSW 287 (468)
Q Consensus 249 ~~~~~~~-~~d~~~~~~~ykVv~v~~~----------------------------------------~~v~vy~s~t~~W 287 (468)
.....++ ..+ .||+++|+. ..+++||+.+++|
T Consensus 108 ~~~~~~~~~~~-------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W 180 (346)
T TIGR03547 108 LLGASGFSLHN-------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW 180 (346)
T ss_pred ccceeEEEEeC-------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce
Confidence 1111222 223 588988763 3489999999999
Q ss_pred cCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------CeEEEEE--CCCCeEEEeecCCCCCC-------CCceE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYN--MVTGVWKQFIIPTPLHL-------NDHTL 352 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD--~~~~~w~~i~~P~p~~~-------~~~~l 352 (468)
+.++.||... +.....+.++|+||++++.. ..+..|| +.+++|..+ .+++..+ ....+
T Consensus 181 ~~~~~~p~~~------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 181 RNLGENPFLG------TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred eECccCCCCc------CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCCCCCCCccccccEEee
Confidence 9998876421 12345667899999998631 1244455 567799987 4554322 12336
Q ss_pred EEECCeEEEEEEEeeCC------------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCE
Q 012227 353 AECGGRIMLVGLLTKNA------------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGL 414 (468)
Q Consensus 353 ~~~~G~L~lv~~~~~~~------------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~ 414 (468)
++.+|+||++++..... ...+++| +..+++|+.+..||..+.. ..++..+|.
T Consensus 254 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~~~~W~~~~~lp~~~~~--------~~~~~~~~~ 323 (346)
T TIGR03547 254 GISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALDNGKWSKVGKLPQGLAY--------GVSVSWNNG 323 (346)
T ss_pred eEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--EecCCcccccCCCCCCcee--------eEEEEcCCE
Confidence 77899999999864210 1245566 5556899999999865421 234446888
Q ss_pred EEEEee
Q 012227 415 LMLSLR 420 (468)
Q Consensus 415 I~~~~~ 420 (468)
||+..+
T Consensus 324 iyv~GG 329 (346)
T TIGR03547 324 VLLIGG 329 (346)
T ss_pred EEEEec
Confidence 887543
No 19
>PLN02193 nitrile-specifier protein
Probab=99.42 E-value=5.3e-11 Score=122.45 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=131.3
Q ss_pred cceecCCCCcccCCCCC-CCCCC-cEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCC---CcCCcceeE
Q 012227 183 GAMYDPSLKKWHHPTIS-SLPTK-MIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPAR---SVKVWSRVA 252 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l~-~~p~~-~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~---~~~~~~~~~ 252 (468)
...||+..++|..++.. ..|.. .....++..++.|++.++. ...++++||.|++|..++++ +.++....
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~- 273 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS- 273 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE-
Confidence 45789999999865432 23321 1112245567777776542 24699999999999999876 23332222
Q ss_pred EEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC---
Q 012227 253 VGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP--- 323 (468)
Q Consensus 253 ~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~--- 323 (468)
....+ -+|+++|+.. .+++||+.+++|+.++... .. + ..+.....++++|++|++++..
T Consensus 274 -~~~~~-------~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~--~-~~R~~~~~~~~~gkiyviGG~~g~~ 341 (470)
T PLN02193 274 -MAADE-------ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPG-DS--F-SIRGGAGLEVVQGKVWVVYGFNGCE 341 (470)
T ss_pred -EEEEC-------CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCC-CC--C-CCCCCcEEEEECCcEEEEECCCCCc
Confidence 11222 4789888742 3899999999999875421 10 0 1123455677899999998632
Q ss_pred -CeEEEEECCCCeEEEeec--CCCCCCCCceEEEECCeEEEEEEEeeCC--------ccEEEEEEEecCCCCeEEEEeeC
Q 012227 324 -EGIVSYNMVTGVWKQFII--PTPLHLNDHTLAECGGRIMLVGLLTKNA--------ATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 324 -~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~~G~L~lv~~~~~~~--------~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
..+.+||+.+++|+.+.. +.|..+.....+.++++||++++..... ...-++|.||..+++|+++..++
T Consensus 342 ~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 469999999999998742 1244455567788999999999864311 11236999999999999987665
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.34 E-value=5e-11 Score=117.01 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=114.2
Q ss_pred cceecCCCCccc--CCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCCCc-CCcceeEEE
Q 012227 183 GAMYDPSLKKWH--HPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSV-KVWSRVAVG 254 (468)
Q Consensus 183 ~~~~dp~~~~w~--~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~ 254 (468)
...||+..++|. -..++.+|........+..+|.|++.++. ...++++||.|++|..+++++. .+... ..
T Consensus 90 v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~--~~ 167 (323)
T TIGR03548 90 VYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP--VC 167 (323)
T ss_pred EEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc--eE
Confidence 446788888872 12344555443222256678888777542 2469999999999999987643 22222 22
Q ss_pred EEEcCCCCCCCeEEEEEEecC-----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------
Q 012227 255 MTLNGNSTSSGYKILWVGCDG-----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------ 323 (468)
Q Consensus 255 ~~~d~~~~~~~ykVv~v~~~~-----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------ 323 (468)
...+ -+|+++|+.. .+++||+.+++|+.++.++.. ..|.........++.+++||++++..
T Consensus 168 ~~~~-------~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 168 VKLQ-------NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTD-SEPISLLGAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred EEEC-------CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCC-CCceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence 2233 4899998743 378999999999998776421 11211111122334579999998632
Q ss_pred -------------------------------CeEEEEECCCCeEEEeecCCC-CCCCCceEEEECCeEEEEEEEee
Q 012227 324 -------------------------------EGIVSYNMVTGVWKQFIIPTP-LHLNDHTLAECGGRIMLVGLLTK 367 (468)
Q Consensus 324 -------------------------------~~i~~fD~~~~~w~~i~~P~p-~~~~~~~l~~~~G~L~lv~~~~~ 367 (468)
+.+++||+.+++|+.+. ++| ..+....++..+|+||++++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG-NSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc-cccccccCchheEEECCEEEEEecccc
Confidence 46999999999999874 444 34556678999999999998654
No 21
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.18 E-value=9e-10 Score=92.73 Aligned_cols=110 Identities=18% Similarity=0.384 Sum_probs=76.6
Q ss_pred eEEECCEEEEEEcC----CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC-
Q 012227 309 AVSVDGILYFMRSD----PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM- 381 (468)
Q Consensus 309 ~v~~~G~lY~~~~~----~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~- 381 (468)
++++||.+||++.. ...|++||+.+|+|+.+++| .........|++++|+|+++..........++||.|++.
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 46799999999864 46899999999999999888 333345678999999999987654322457999999976
Q ss_pred CCCeEEEEe-eChhhhhcccCcceEEEEEecCCEEEEE
Q 012227 382 TLLWKEVDR-MPNIWCLDFYGKHVRMTCLGNKGLLMLS 418 (468)
Q Consensus 382 ~~~W~~v~~-mp~~~~~~~~~~~~~~~~~~~~~~I~~~ 418 (468)
+.+|.+... +|........+....+..+..+|.|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 579999865 4443322111122234444445665553
No 22
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.87 E-value=6.8e-08 Score=84.88 Aligned_cols=131 Identities=14% Similarity=0.211 Sum_probs=83.2
Q ss_pred eEEECCEEEEEEcCC---C--eEEEEECCCCeE-EEeecCCCCC--CCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEe
Q 012227 309 AVSVDGILYFMRSDP---E--GIVSYNMVTGVW-KQFIIPTPLH--LNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 309 ~v~~~G~lY~~~~~~---~--~i~~fD~~~~~w-~~i~~P~p~~--~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
+|++||.+||++... . .|++||+.+|+| ..+++|.... .....|.+ .+|+|+++... .....++||.++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--DETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--cCCccEEEEEEe
Confidence 578999999998632 1 699999999999 7765554433 12345544 37899988542 223469999999
Q ss_pred cC---CCCeEEEEeeChhhhhcccCc-ceEEEEEecCCEEEEEeeeCCC----CeEEEEECCCCcEEEccC
Q 012227 380 KM---TLLWKEVDRMPNIWCLDFYGK-HVRMTCLGNKGLLMLSLRSRQM----NRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 380 ~~---~~~W~~v~~mp~~~~~~~~~~-~~~~~~~~~~~~I~~~~~~~~~----~~l~~YD~~t~~w~~v~~ 442 (468)
+. ..+|++...++.......... ......+..++.++++...... ..++.|+ +++..+++..
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~ 148 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI 148 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence 53 579999988864332221110 0112233445566665443322 5688888 7788887754
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.86 E-value=1.2e-07 Score=85.71 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=129.9
Q ss_pred eEEEEcCCCCceEecCCCC--cC--------CcceeEE-EEEEcCCCCCCCeEEEEEEecCc-------EEEEeCCCCCc
Q 012227 226 NFYVCNPLTQSFKELPARS--VK--------VWSRVAV-GMTLNGNSTSSGYKILWVGCDGE-------YEIYDSLRNSW 287 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~--~~--------~~~~~~~-~~~~d~~~~~~~ykVv~v~~~~~-------v~vy~s~t~~W 287 (468)
.+.++|..+-+|..+|+-- .. .+.++.. .+.++ -|+++-|+.++ ...||++++.|
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-------d~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-------DKAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-------ceEEEEcCccCcccccceeeeeccccccc
Confidence 5899999999999999831 00 0111111 11222 37777776442 68899999999
Q ss_pred cCCCC---CCCCcccCcccccccceEEECCEEEEEEcC-------CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEE
Q 012227 288 TRPGS---MPSNIKLPVSLNFRSQAVSVDGILYFMRSD-------PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAEC 355 (468)
Q Consensus 288 ~~~~~---~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-------~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~ 355 (468)
..... +|.. +-.+.+++.+..+|..++. ...+.++|++|.+|+.+..- +|..+..+...++
T Consensus 118 ~~p~v~G~vPga-------RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~ 190 (392)
T KOG4693|consen 118 KKPEVEGFVPGA-------RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI 190 (392)
T ss_pred cccceeeecCCc-------cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence 87632 3322 2246678899999999862 13588899999999998542 2344556677788
Q ss_pred CCeEEEEEEEeeC--------CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-----
Q 012227 356 GGRIMLVGLLTKN--------AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR----- 422 (468)
Q Consensus 356 ~G~L~lv~~~~~~--------~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~----- 422 (468)
+|..|+.++..+. +..+-+|-.||..++.|.....-+.. . +.......+.-++++|+..+..
T Consensus 191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~--P---~GRRSHS~fvYng~~Y~FGGYng~ln~ 265 (392)
T KOG4693|consen 191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK--P---GGRRSHSTFVYNGKMYMFGGYNGTLNV 265 (392)
T ss_pred cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC--C---CcccccceEEEcceEEEecccchhhhh
Confidence 9999999986541 12334666778778999875322111 0 0001122334467777632211
Q ss_pred CCCeEEEEECCCCcEEEcc---CCccCCCC
Q 012227 423 QMNRLVTYNVMSREWLKVP---GCVVPRGR 449 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w~~v~---~~~~~~~~ 449 (468)
..+.+++||+.+..|..+. ..|.++.|
T Consensus 266 HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR 295 (392)
T KOG4693|consen 266 HFNDLYCFDPKTSMWSVISVRGKYPSARRR 295 (392)
T ss_pred hhcceeecccccchheeeeccCCCCCcccc
Confidence 2357999999999999994 34555544
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.80 E-value=3.6e-09 Score=71.94 Aligned_cols=43 Identities=16% Similarity=0.512 Sum_probs=37.1
Q ss_pred hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227 119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH 161 (468)
Q Consensus 119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~ 161 (468)
|..||+|++.+||..|+..|+.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988766553
No 25
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.80 E-value=2.3e-07 Score=83.85 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=117.2
Q ss_pred ecCceEEEEEcCC------ceEEEEcCCCCceEecCCC---CcCCcceeEEEEEEcCCCCCCCeEEEEEEec--------
Q 012227 212 SAGGLVCFLDIGH------RNFYVCNPLTQSFKELPAR---SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-------- 274 (468)
Q Consensus 212 s~~GLl~~~~~~~------~~~~V~NP~T~~~~~LP~~---~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-------- 274 (468)
.-.+-+++.++.. ..++.+||-|.+|...--. +-.+..+.++..+ -..+++|+.
T Consensus 86 ~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g---------n~MyiFGGye~~a~~FS 156 (392)
T KOG4693|consen 86 EYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG---------NQMYIFGGYEEDAQRFS 156 (392)
T ss_pred EEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC---------cEEEEecChHHHHHhhh
Confidence 3355555554332 3588999999999863221 1122222222221 134445542
Q ss_pred CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC--------------CCeEEEEECCCCeEEEee
Q 012227 275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD--------------PEGIVSYNMVTGVWKQFI 340 (468)
Q Consensus 275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~--------------~~~i~~fD~~~~~w~~i~ 340 (468)
.++.++|..|-+|+.+..... |...+-.+.++.++|.+|..++. .+.|+++|++|+.|...+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~----PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p 232 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGD----PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP 232 (392)
T ss_pred ccceeEeccceeeeehhccCC----CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence 238899999999998854221 11122235667789999999862 146999999999998641
Q ss_pred c-C-CCCCCCCceEEEECCeEEEEEEEee-CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEE
Q 012227 341 I-P-TPLHLNDHTLAECGGRIMLVGLLTK-NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLML 417 (468)
Q Consensus 341 ~-P-~p~~~~~~~l~~~~G~L~lv~~~~~-~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~ 417 (468)
. + .|..+..+..-+++|++|+.+++.. -+...-++|.+|+.+..|+++..-+..-+. ..+-.|+..++++|+
T Consensus 233 ~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-----RRRqC~~v~g~kv~L 307 (392)
T KOG4693|consen 233 ENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-----RRRQCSVVSGGKVYL 307 (392)
T ss_pred CCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-----ccceeEEEECCEEEE
Confidence 1 1 1445556777899999999998764 233455899999999999998644322111 012234445788877
Q ss_pred E
Q 012227 418 S 418 (468)
Q Consensus 418 ~ 418 (468)
.
T Consensus 308 F 308 (392)
T KOG4693|consen 308 F 308 (392)
T ss_pred e
Confidence 4
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.70 E-value=9.6e-07 Score=91.00 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=133.7
Q ss_pred eEEEEcCCCCceEecCCCC---cCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCC
Q 012227 226 NFYVCNPLTQSFKELPARS---VKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPS 295 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~---~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~ 295 (468)
.++++|--+..|....... ..+.....+.. + -+++++|+.. ++..||..+++|+.+.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~--~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~ 159 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV--G-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD 159 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE--C-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC
Confidence 4999999999998766542 12222221111 1 3778888754 59999999999997754322
Q ss_pred CcccCcccccccceEEECCEEEEEEcC------CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEee
Q 012227 296 NIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTK 367 (468)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~ 367 (468)
.| ..+..+.++.++.++|+.++. .+.+.+||+++.+|..+... .|..+.++.+++.+++++++++...
T Consensus 160 ---~P-~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 160 ---PP-PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred ---CC-CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence 11 113467788889999999862 24688999999999998554 3455677889999999999998764
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-----CCCeEEEEECCCCcEEEccC
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-----QMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-----~~~~l~~YD~~t~~w~~v~~ 442 (468)
.+...-++|.||-.+.+|.++...+......+. .... ..++.+++..+.. ....++.||++++.|.++..
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~---h~~~--~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG---HSLT--VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred CCceecceEeeecccceeeeccccCCCCCCcce---eeeE--EECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence 444556899999988899866444322111110 0122 2345555432221 24568999999999999976
Q ss_pred Cc
Q 012227 443 CV 444 (468)
Q Consensus 443 ~~ 444 (468)
..
T Consensus 311 ~~ 312 (482)
T KOG0379|consen 311 VG 312 (482)
T ss_pred cc
Confidence 55
No 27
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.64 E-value=1.7e-08 Score=68.96 Aligned_cols=44 Identities=18% Similarity=0.495 Sum_probs=37.4
Q ss_pred hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227 118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH 161 (468)
Q Consensus 118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~ 161 (468)
.|.+||+|++.+||.+|+..++.+++.|||+|++++.+..+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 47889999999999999999999999999999999999877653
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.54 E-value=1.9e-06 Score=82.59 Aligned_cols=199 Identities=14% Similarity=0.203 Sum_probs=123.3
Q ss_pred eEEEEcCCCCceEecCCC--CcCCcceeEEEEEEcCCCCCCCeEEEEEEec------------CcEEEEeCCCCCccCCC
Q 012227 226 NFYVCNPLTQSFKELPAR--SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD------------GEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~--~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~------------~~v~vy~s~t~~W~~~~ 291 (468)
.+|+||--+.+|+.+-.+ |.++..+.+++. ++ + .++++|+. .+.++|+..+++|+.+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~-----~s-~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAV-----PS-N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEe-----cc-C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 589999999999987554 444443333332 11 1 34444442 13899999999999885
Q ss_pred CCCCCcccCcccccccceEEECCEEEEEEcC---------CCeEEEEECCCCeEEEeecCC--CCCCCCceEEEE-CCeE
Q 012227 292 SMPSNIKLPVSLNFRSQAVSVDGILYFMRSD---------PEGIVSYNMVTGVWKQFIIPT--PLHLNDHTLAEC-GGRI 359 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~---------~~~i~~fD~~~~~w~~i~~P~--p~~~~~~~l~~~-~G~L 359 (468)
.-.. | +.+..+..|+....|...++- -+-+.+||+++=+|+.+..+- |..+.+.++.+. +|.|
T Consensus 171 ~~g~----P-S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 171 FGGG----P-SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred cCCC----C-CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 4211 1 113345666666666655541 135889999999999986654 556777888887 9999
Q ss_pred EEEEEEee--------CCccEEEEEEEecCC-----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-----
Q 012227 360 MLVGLLTK--------NAATCVCIWELQKMT-----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS----- 421 (468)
Q Consensus 360 ~lv~~~~~--------~~~~~i~Vw~ld~~~-----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~----- 421 (468)
++.++++. .+...-+.|.|++.. -.|+++...+..-... ....+.+..++-.++|..-.
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspR---sgfsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPR---SGFSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCC---CceeEEEecCCceEEecceeccccc
Confidence 99999865 123556899999865 4788876553321110 00112222233344441100
Q ss_pred ------CCCCeEEEEECCCCcEEEc
Q 012227 422 ------RQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 422 ------~~~~~l~~YD~~t~~w~~v 440 (468)
.-.+.|+.||+..++|.+.
T Consensus 323 eEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred chhhhhhhhhhhhheecccchhhHh
Confidence 0135789999999999876
No 29
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.53 E-value=6.8e-08 Score=63.44 Aligned_cols=39 Identities=33% Similarity=0.826 Sum_probs=36.3
Q ss_pred ChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 122 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 122 LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887654
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.37 E-value=1.4e-05 Score=82.52 Aligned_cols=167 Identities=17% Similarity=0.273 Sum_probs=114.6
Q ss_pred eEEEEEEecC--------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------CeEEEEEC
Q 012227 266 YKILWVGCDG--------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYNM 331 (468)
Q Consensus 266 ykVv~v~~~~--------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD~ 331 (468)
-+++++++.. ++.++|..+..|........ .| ..+..+..+.++..||.+++.. ..+..||+
T Consensus 71 ~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~---~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~ 146 (482)
T KOG0379|consen 71 NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD---EP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDL 146 (482)
T ss_pred CEEEEECCCCCCCccccceeEEeecCCcccccccccCC---CC-CcccceeEEEECCeEEEEccccCCCCChhheEeccC
Confidence 3677776532 28888999999986543211 11 1234566778899999998743 36999999
Q ss_pred CCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227 332 VTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL 409 (468)
Q Consensus 332 ~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~ 409 (468)
.|.+|..+..- +|..+.++.++..+.+|++.++........-++|.||..+.+|.++...+..-.... ...++
T Consensus 147 ~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~-----gH~~~ 221 (482)
T KOG0379|consen 147 STRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY-----GHAMV 221 (482)
T ss_pred CCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC-----CceEE
Confidence 99999987321 245566788889999999999876543356799999999899999976654332111 13344
Q ss_pred ecCCEEEEEeeeC----CCCeEEEEECCCCcEEEcc
Q 012227 410 GNKGLLMLSLRSR----QMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 410 ~~~~~I~~~~~~~----~~~~l~~YD~~t~~w~~v~ 441 (468)
..++.+++..+.. ....++.+|+.+.+|.++.
T Consensus 222 ~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 222 VVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred EECCeEEEEeccccCCceecceEeeecccceeeecc
Confidence 4456655533322 3457899999999999764
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.00 E-value=0.00024 Score=66.85 Aligned_cols=43 Identities=16% Similarity=0.452 Sum_probs=39.3
Q ss_pred hhccCh----HHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 118 IWKEFP----EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 118 ~w~~LP----~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
.+..|| +++.++||+.|...+|..+..|||+|+++++++-.-+
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 467899 9999999999999999999999999999999986655
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.87 E-value=0.0015 Score=63.27 Aligned_cols=159 Identities=16% Similarity=0.291 Sum_probs=102.2
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEEC-CEEEEEEcC---C--------CeEEEEECCCCeEEEeecCC
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVD-GILYFMRSD---P--------EGIVSYNMVTGVWKQFIIPT 343 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~-G~lY~~~~~---~--------~~i~~fD~~~~~w~~i~~P~ 343 (468)
++.+|+.++++|+.+.+.... .| +..+++|++- |.+|..++. + .-+..||+.+.+|..+..+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P--~p---Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAP--PP---RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeEEeccccceeEeccCCCc--CC---CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 478999999999987542111 11 2345566654 777777652 1 24778999999999997764
Q ss_pred -CCCCCCceEEEECCeEEEEEEEeeCCc---cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEe
Q 012227 344 -PLHLNDHTLAECGGRIMLVGLLTKNAA---TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL 419 (468)
Q Consensus 344 -p~~~~~~~l~~~~G~L~lv~~~~~~~~---~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~ 419 (468)
|..+.++.++.+..+|.+.++..+... ..-+||.++-.+-+|.++.. +..+-..-.| ..+.+.- .|.||++.
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSG--cq~~vtp-qg~i~vyG 249 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSG--CQFSVTP-QGGIVVYG 249 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCc--ceEEecC-CCcEEEEc
Confidence 566788999999999999999876332 23588999988899999866 2211111111 1222222 44555533
Q ss_pred eeC------------CCCeEEEEECCC-----CcEEEccCC
Q 012227 420 RSR------------QMNRLVTYNVMS-----REWLKVPGC 443 (468)
Q Consensus 420 ~~~------------~~~~l~~YD~~t-----~~w~~v~~~ 443 (468)
+.. ....++..++++ =+|.+|...
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~ 290 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS 290 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence 211 123577888877 467777654
No 33
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0021 Score=61.35 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=94.7
Q ss_pred eEEEEcC--CCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-----------cEEEEeCCCCCccCCCC
Q 012227 226 NFYVCNP--LTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-----------EYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 226 ~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-----------~v~vy~s~t~~W~~~~~ 292 (468)
.+++.|. ..+.|..+...+....... +....+ -|++++++.+ .+..||+.+++|..+..
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa-~~a~~~-------~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t 130 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQA-VAAVIG-------GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT 130 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccc-hheeeC-------CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc
Confidence 4566544 4578988877543322211 111222 4777766532 27889999999998865
Q ss_pred CCCCcccCcccccccceEEECC-EEEEEEcC---------------------------------------CCeEEEEECC
Q 012227 293 MPSNIKLPVSLNFRSQAVSVDG-ILYFMRSD---------------------------------------PEGIVSYNMV 332 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~---------------------------------------~~~i~~fD~~ 332 (468)
..+ .. .....++..++ .+|+.++. ...+++||+.
T Consensus 131 ~sP-----~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~ 204 (381)
T COG3055 131 RSP-----TG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS 204 (381)
T ss_pred ccc-----cc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc
Confidence 321 11 12334455566 88887631 0358999999
Q ss_pred CCeEEEeecCCCCCC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEec--CCCCeEEEEeeChhhhh
Q 012227 333 TGVWKQFIIPTPLHL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQK--MTLLWKEVDRMPNIWCL 397 (468)
Q Consensus 333 ~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~--~~~~W~~v~~mp~~~~~ 397 (468)
++.|+..-. .|... .+..++.-+++|.+|.+.-++..++-++++.+- ...+|.++..+|.....
T Consensus 205 ~n~W~~~G~-~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~ 271 (381)
T COG3055 205 TNQWRNLGE-NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGS 271 (381)
T ss_pred cchhhhcCc-CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCC
Confidence 999997631 22222 223334446669998887666666666666654 45799999888755443
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=6.3e-05 Score=69.97 Aligned_cols=42 Identities=19% Similarity=0.534 Sum_probs=38.8
Q ss_pred hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
|..|||||++.||+.|+.++|++...|||+|+++-++.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 999999999999999999999999999999999987765544
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.54 E-value=0.0027 Score=63.07 Aligned_cols=199 Identities=17% Similarity=0.241 Sum_probs=106.3
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCc-----EEEEeCCCCC--ccCCCCCCCCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGE-----YEIYDSLRNS--WTRPGSMPSNI 297 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~-----v~vy~s~t~~--W~~~~~~p~~~ 297 (468)
..+.|||-.|++|-.-.-...-.....++||..|+ -||+++|+.-+ -+.|...... |+.+..-+...
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG------trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG------TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcceEecC------ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence 47999999999996422111111134567888774 48998887533 2445554444 55554322222
Q ss_pred ccCcccccccceEEECCEEEEEEc--C----C--------CeEEEEECC--CC--eEEEee--cCCCCCCCCceEEEE--
Q 012227 298 KLPVSLNFRSQAVSVDGILYFMRS--D----P--------EGIVSYNMV--TG--VWKQFI--IPTPLHLNDHTLAEC-- 355 (468)
Q Consensus 298 ~~~~~~~~~~~~v~~~G~lY~~~~--~----~--------~~i~~fD~~--~~--~w~~i~--~P~p~~~~~~~l~~~-- 355 (468)
..+-.-+..+.-..++++.|.+++ + . +.+...++. .+ .|.... -+.|..+..+..+.+
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e 210 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE 210 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence 222222334555667899999875 1 0 123333333 22 354321 012223333444433
Q ss_pred -C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEE-----EeeChhhhhcccCcceEEEEEecCCEEEEEee------
Q 012227 356 -G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEV-----DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR------ 420 (468)
Q Consensus 356 -~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v-----~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~------ 420 (468)
| -++++.++... ..-=++|.||-++..|.+. ..||..+.. ....||+.|+..+
T Consensus 211 KDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs----------a~~IGnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 211 KDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS----------ATTIGNKMYVFGGWVPLVM 278 (830)
T ss_pred ccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCccccc----------ceeecceeEEecceeeeec
Confidence 2 35666665433 2334899999999999885 344444332 1112444444210
Q ss_pred -e-C---------CCCeEEEEECCCCcEEEcc
Q 012227 421 -S-R---------QMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 421 -~-~---------~~~~l~~YD~~t~~w~~v~ 441 (468)
. . =...+-+.|+++..|+.+-
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeee
Confidence 0 0 0235789999999999884
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.42 E-value=0.00089 Score=45.02 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 348 NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 348 ~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
....+++++++||++++........-.+|++|..+++|+++..||
T Consensus 3 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 3 SGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred ccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 345678899999999998775566778999999999999999986
No 37
>PF13964 Kelch_6: Kelch motif
Probab=97.03 E-value=0.00083 Score=45.93 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=36.8
Q ss_pred CceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeCh
Q 012227 349 DHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPN 393 (468)
Q Consensus 349 ~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~ 393 (468)
...++.++|+||++++........-+||++|..+++|+++..||.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 456788999999999876533445689999999999999998874
No 38
>PF13964 Kelch_6: Kelch motif
Probab=97.01 E-value=0.0019 Score=44.15 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=30.3
Q ss_pred EEecCCEEEEEeeeCC----CCeEEEEECCCCcEEEccCCccCC
Q 012227 408 CLGNKGLLMLSLRSRQ----MNRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 408 ~~~~~~~I~~~~~~~~----~~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
++..++.||+..+... ...+++||+++++|+.++.+|.+|
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4445788888543322 468999999999999999888764
No 39
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.024 Score=54.36 Aligned_cols=181 Identities=16% Similarity=0.234 Sum_probs=109.8
Q ss_pred EEEEEEecCc--EEEEeCC--CCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC----------CeEEEEECC
Q 012227 267 KILWVGCDGE--YEIYDSL--RNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP----------EGIVSYNMV 332 (468)
Q Consensus 267 kVv~v~~~~~--v~vy~s~--t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~----------~~i~~fD~~ 332 (468)
++++.-+... ..+.|.+ ...|+.++..|-.. +-....++++|+||+.++.. +.+..||+.
T Consensus 48 ~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~------rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~ 121 (381)
T COG3055 48 TVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGA------RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS 121 (381)
T ss_pred eEEEEeccCCccceehhhhcCCCCceEcccCCCcc------cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC
Confidence 4554333333 3444444 46799998765431 22345667999999987521 347789999
Q ss_pred CCeEEEeecCCCCCCCCceEEEECC-eEEEEEEEeeC--------------C-------------------ccEEEEEEE
Q 012227 333 TGVWKQFIIPTPLHLNDHTLAECGG-RIMLVGLLTKN--------------A-------------------ATCVCIWEL 378 (468)
Q Consensus 333 ~~~w~~i~~P~p~~~~~~~l~~~~G-~L~lv~~~~~~--------------~-------------------~~~i~Vw~l 378 (468)
+++|..+..-.|........+..++ ++++.++.... + ...-+||.+
T Consensus 122 ~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 122 TNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred CChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 9999998665566555556666666 99998876431 0 112467777
Q ss_pred ecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-C---CCCeEEEEECC--CCcEEEccCCccCCCCccc
Q 012227 379 QKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-R---QMNRLVTYNVM--SREWLKVPGCVVPRGRKRQ 452 (468)
Q Consensus 379 d~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-~---~~~~l~~YD~~--t~~w~~v~~~~~~~~~~~~ 452 (468)
++.++.|..+...|-.-. .+ ..++..+|.+.+..+. + ....+..+|.. .-+|.+++.+|.+.+.-.+
T Consensus 202 ~p~~n~W~~~G~~pf~~~---aG----sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~e 274 (381)
T COG3055 202 DPSTNQWRNLGENPFYGN---AG----SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKE 274 (381)
T ss_pred ccccchhhhcCcCcccCc---cC----cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcc
Confidence 887888887766653211 11 3344456755442211 1 12345566654 5589999888877765545
Q ss_pred eeeeeeee
Q 012227 453 WIACGTAF 460 (468)
Q Consensus 453 ~~~~g~~f 460 (468)
-++.+|..
T Consensus 275 GvAGaf~G 282 (381)
T COG3055 275 GVAGAFSG 282 (381)
T ss_pred ccceeccc
Confidence 66666643
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.79 E-value=0.0021 Score=43.67 Aligned_cols=44 Identities=20% Similarity=0.423 Sum_probs=35.5
Q ss_pred CceEEEECCeEEEEEEE--eeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 349 DHTLAECGGRIMLVGLL--TKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 349 ~~~l~~~~G~L~lv~~~--~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
.+..++.+++||++++. ........++|.+|..+.+|+++..||
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 45677899999999998 223456678999999999999987764
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.49 E-value=0.65 Score=48.59 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=39.7
Q ss_pred hhhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 116 QEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 116 ~~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
......||.++...||..|+.++++.+++||+.|+.++.+.....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 345688999999999999999999999999999999988765554
No 42
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.44 E-value=0.13 Score=50.82 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=77.5
Q ss_pred ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCcc------EEEEEEEec----
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAAT------CVCIWELQK---- 380 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~------~i~Vw~ld~---- 380 (468)
.+.+|..+... ..++.||.++...... |... .......+..+|+||++......... .+++..++.
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 37777777654 4588999999987743 4322 22234455679999999876432111 677775552
Q ss_pred --C--CCCeEEEEeeChhhhhcccCc----ceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccCC
Q 012227 381 --M--TLLWKEVDRMPNIWCLDFYGK----HVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 381 --~--~~~W~~v~~mp~~~~~~~~~~----~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
. ...|..+..-| +...... .....++ +|..|+++.... ....++||.++.+|+++....+|.
T Consensus 152 ~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred ccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCC-ceEEEEEEcCCcceeeccceecCc
Confidence 1 23566543322 2111110 1234444 578898865431 136899999999999998766665
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.15 E-value=0.01 Score=39.75 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=28.5
Q ss_pred ccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEe
Q 012227 306 RSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQF 339 (468)
Q Consensus 306 ~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i 339 (468)
...++.+++.||++++.. ..+..||+.+++|..+
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 456788999999998721 3699999999999987
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.09 E-value=0.016 Score=39.15 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=27.4
Q ss_pred CceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 349 DHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 349 ~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
.+.++.. +++|+++++........-++|.+|..+++|+++..+|
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 3445555 6999999998765455668999999999999997776
No 45
>smart00612 Kelch Kelch domain.
Probab=95.80 E-value=0.019 Score=38.05 Aligned_cols=29 Identities=41% Similarity=0.589 Sum_probs=22.1
Q ss_pred EEEEEecC------cEEEEeCCCCCccCCCCCCCC
Q 012227 268 ILWVGCDG------EYEIYDSLRNSWTRPGSMPSN 296 (468)
Q Consensus 268 Vv~v~~~~------~v~vy~s~t~~W~~~~~~p~~ 296 (468)
|+++|+.. .+++||+.+++|+.++.|+..
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCc
Confidence 55555532 389999999999999887754
No 46
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.79 E-value=0.005 Score=57.86 Aligned_cols=43 Identities=7% Similarity=0.206 Sum_probs=38.6
Q ss_pred hccChHHHHHHHHhcCCh-----hhHHHHhhcccchhhhccCcchhhh
Q 012227 119 WKEFPEDLYEAVIARLPI-----ATFFRFRSVCQKWNSLLKSHSFSQH 161 (468)
Q Consensus 119 w~~LP~DLl~~IL~RLp~-----~~l~r~r~VCK~Wr~li~s~~F~~~ 161 (468)
+..||||||..||.++=. .+|.++++|||.|+-...+|+|.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 568999999999998754 7899999999999999999998873
No 47
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.60 E-value=0.77 Score=42.84 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=105.9
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
...+|-|++.+....+++.++|.+++...+..+. ..++.++ . .+.++++ +......++|..+++++.+
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~--~--~~g~l~v-~~~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFD--R--PDGRLYV-ADSGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEE--C--TTSEEEE-EETTCEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEE--c--cCCEEEE-EEcCceEEEecCCCcEEEE
Confidence 3347778888877789999999999887654422 2444444 1 1245554 3445677789999988876
Q ss_pred CCCCCCcccCcccccccceEEECCEEEEEEcCC--------CeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe-EE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP--------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR-IM 360 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~--------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~-L~ 360 (468)
...+... .+. .....-.+--+|.+|+-.... ..+..+|+. ++...+...+. ....++.. +|+ ||
T Consensus 76 ~~~~~~~-~~~-~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 76 ADLPDGG-VPF-NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEETTC-SCT-EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEEEETTSSEEE
T ss_pred eeccCCC-ccc-CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceEECCcchhee
Confidence 5432110 000 011122233378988865421 358899998 65554421111 11234433 565 55
Q ss_pred EEEEEeeCCccEEEEEEEecC--CCCeEEEEe---eChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 361 LVGLLTKNAATCVCIWELQKM--TLLWKEVDR---MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~---mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
++.. ... .||+++.. ...+..... ++... + ...-.++..+|.||+... ..+.|.+||++.+
T Consensus 150 v~ds----~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g-~pDG~~vD~~G~l~va~~--~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 150 VADS----FNG--RIWRFDLDADGGELSNRRVFIDFPGGP-----G-YPDGLAVDSDGNLWVADW--GGGRIVVFDPDGK 215 (246)
T ss_dssp EEET----TTT--EEEEEEEETTTCCEEEEEEEEE-SSSS-----C-EEEEEEEBTTS-EEEEEE--TTTEEEEEETTSC
T ss_pred eccc----ccc--eeEEEeccccccceeeeeeEEEcCCCC-----c-CCCcceEcCCCCEEEEEc--CCCEEEEECCCcc
Confidence 4332 123 46665543 344543322 22111 0 011235556788887543 3579999999966
Q ss_pred cEEEcc
Q 012227 436 EWLKVP 441 (468)
Q Consensus 436 ~w~~v~ 441 (468)
....+.
T Consensus 216 ~~~~i~ 221 (246)
T PF08450_consen 216 LLREIE 221 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 666664
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.32 E-value=2 Score=39.61 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=64.4
Q ss_pred CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEEC---C--EEEEEEc-----CCCeEEEEECCCCeEEEeecCCC
Q 012227 275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVD---G--ILYFMRS-----DPEGIVSYNMVTGVWKQFIIPTP 344 (468)
Q Consensus 275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~---G--~lY~~~~-----~~~~i~~fD~~~~~w~~i~~P~p 344 (468)
..+.|+++.|+.|+.++..+.....+.. ...+.-.+ + ++-.+.. ....+.+|+..++.|+.+..+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~---~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKES---DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCccccccc---ceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence 4588999999999988653321000000 00111111 1 2222221 12467899999999999853322
Q ss_pred CCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChh
Q 012227 345 LHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNI 394 (468)
Q Consensus 345 ~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~ 394 (468)
.......-+..+|.||.+...... .....|-.+|-.+++|.+.-.+|..
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~ 139 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCG 139 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcc
Confidence 222222245679999998754321 1222577778778899863345543
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.24 E-value=0.31 Score=45.26 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=85.5
Q ss_pred EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC---CCeEEEEECCC----CeEEEeecCCCCCCCC
Q 012227 277 YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD---PEGIVSYNMVT----GVWKQFIIPTPLHLND 349 (468)
Q Consensus 277 v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~---~~~i~~fD~~~----~~w~~i~~P~p~~~~~ 349 (468)
..+||+.+++++.+... .. .......+.-||.+...++. ...+-.|++.+ ..|.+..-.+...+..
T Consensus 48 s~~yD~~tn~~rpl~v~-td------~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ-TD------TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCC-CC------CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 57899999999877532 11 11122333358888777653 24577888865 6787754345666666
Q ss_pred ceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEE
Q 012227 350 HTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLV 428 (468)
Q Consensus 350 ~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~ 428 (468)
+....+ +|++.+|++... .+.+.|--.........+.-+.. ..........++..+.-+|.||+... ..-.
T Consensus 121 pT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~-~~~~~~~nlYP~~~llPdG~lFi~an----~~s~ 192 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQ-TSDTLPNNLYPFVHLLPDGNLFIFAN----RGSI 192 (243)
T ss_pred ccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchh-hhccCccccCceEEEcCCCCEEEEEc----CCcE
Confidence 666665 999999998653 23343311000111111111110 00001111224555555677776432 2467
Q ss_pred EEECCCCcE-EEccCCcc
Q 012227 429 TYNVMSREW-LKVPGCVV 445 (468)
Q Consensus 429 ~YD~~t~~w-~~v~~~~~ 445 (468)
.||..++++ +.++.+|-
T Consensus 193 i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred EEeCCCCeEEeeCCCCCC
Confidence 889999977 78887663
No 50
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.02 E-value=0.072 Score=36.02 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=28.3
Q ss_pred ccceEEECCEEEEEEcC--------CCeEEEEECCCCeEEEe
Q 012227 306 RSQAVSVDGILYFMRSD--------PEGIVSYNMVTGVWKQF 339 (468)
Q Consensus 306 ~~~~v~~~G~lY~~~~~--------~~~i~~fD~~~~~w~~i 339 (468)
.+.+++++++||++++. ...+..||+++.+|+.+
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 45678899999999875 13588999999999987
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.71 E-value=5.4 Score=40.16 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=96.5
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE--ecCC-CCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK--ELPA-RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW 287 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~--~LP~-~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W 287 (468)
.+|.|++... ...++.+|+.|++.. .-.. +........ . +....-.|++...++.+..++..++ .|
T Consensus 159 ~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~-s-------P~v~~~~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 159 SDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGES-A-------PATAFGGAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred ECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCCC-C-------CEEECCEEEEEcCCCEEEEEEccCChhhh
Confidence 3677776543 347899999998843 2111 100000000 0 0000124554444555666776655 47
Q ss_pred cCCCCCCCCc-ccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEECCeEEEEEE
Q 012227 288 TRPGSMPSNI-KLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAECGGRIMLVGL 364 (468)
Q Consensus 288 ~~~~~~p~~~-~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~ 364 (468)
+.....+... ...........++..+|.+|+.+.+ ..+.++|+.++ .|+.- ... ...++..+|+||++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~-~~~-----~~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN-GNLVALDLRSGQIVWKRE-YGS-----VNDFAVDGGRIYLVDQ 302 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcC-CeEEEEECCCCCEEEeec-CCC-----ccCcEEECCEEEEEcC
Confidence 6422111110 0000001124566789999987754 58999999876 47642 211 1234667888888653
Q ss_pred EeeCCccEEEEEEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 365 LTKNAATCVCIWELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
.. .++.++..+ ..|+.-. +.... .. .. .+ .+|.||+.. ..+.++++|.++++..+
T Consensus 303 ~g-------~l~ald~~tG~~~W~~~~-~~~~~---~~----sp-~v-~~g~l~v~~---~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 303 ND-------RVYALDTRGGVELWSQSD-LLHRL---LT----AP-VL-YNGYLVVGD---SEGYLHWINREDGRFVA 359 (394)
T ss_pred CC-------eEEEEECCCCcEEEcccc-cCCCc---cc----CC-EE-ECCEEEEEe---CCCEEEEEECCCCCEEE
Confidence 21 466666543 3565321 11100 00 11 12 368887642 24678899999886443
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.35 E-value=1 Score=42.11 Aligned_cols=120 Identities=17% Similarity=0.289 Sum_probs=73.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE--ecCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG--CDGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~--~~~~v~vy~s~t~~W 287 (468)
++.-+|-|.+..-..+-+...||+++.-..+|.+.-...... ....| + ..++ ++. +...+..||+.+.+|
T Consensus 195 ~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR--riwsd--p---ig~~-wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 195 CATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR--RIWSD--P---IGRA-WITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred EECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc--ccccC--c---cCcE-EEeccCCceeeEeCcccccc
Confidence 667788887775555568899999998888887632111110 11222 1 1122 222 233589999999999
Q ss_pred cCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL 345 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~ 345 (468)
.+-.- |.... ....+++ .|.++.-....+.|..||+++.+|+++++|.+.
T Consensus 267 ~eypL-Pgs~a-------rpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 267 IEYPL-PGSKA-------RPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eeeeC-CCCCC-------CcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence 87632 22111 1223333 466665455667899999999999997666553
No 53
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.27 E-value=1.9 Score=40.43 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=88.6
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC 355 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~ 355 (468)
.+..||..+++=.....+|.. .|.-..+.+++++|.++...+..+.||..+-+-.. ..+.+ ..+-.|+.-
T Consensus 69 ~l~~~d~~tg~~~~~~~l~~~-------~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~-~~~y~--~EGWGLt~d 138 (264)
T PF05096_consen 69 SLRKVDLETGKVLQSVPLPPR-------YFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG-TFPYP--GEGWGLTSD 138 (264)
T ss_dssp EEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE-EEE-S--SS--EEEEC
T ss_pred EEEEEECCCCcEEEEEECCcc-------ccceeEEEECCEEEEEEecCCeEEEEccccceEEE-EEecC--CcceEEEcC
Confidence 388899988764333333332 23445567899999999988899999998643221 12222 233455544
Q ss_pred CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+..|++-.+. . .++.+|+. ..+.+.++....-..-......+.++ +|.||..+ .....|+.-|++++
T Consensus 139 g~~Li~SDGS-----~--~L~~~dP~--~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANV--W~td~I~~Idp~tG 205 (264)
T PF05096_consen 139 GKRLIMSDGS-----S--RLYFLDPE--TFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANV--WQTDRIVRIDPETG 205 (264)
T ss_dssp SSCEEEE-SS-----S--EEEEE-TT--T-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEE--TTSSEEEEEETTT-
T ss_pred CCEEEEECCc-----c--ceEEECCc--ccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEe--CCCCeEEEEeCCCC
Confidence 5555554331 2 67777874 34444444322111111111235565 68898754 34678999999999
Q ss_pred cEEEccCCc-------cCCC-Cccceeeeeeeeeee
Q 012227 436 EWLKVPGCV-------VPRG-RKRQWIACGTAFHPC 463 (468)
Q Consensus 436 ~w~~v~~~~-------~~~~-~~~~~~~~g~~f~P~ 463 (468)
+....=.+. .... .+...++-|.||.|.
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 877653221 0001 112468889999875
No 54
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.16 E-value=1.1 Score=45.21 Aligned_cols=115 Identities=18% Similarity=0.289 Sum_probs=76.6
Q ss_pred CCCeEEEEEEecC-----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC---------------
Q 012227 263 SSGYKILWVGCDG-----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD--------------- 322 (468)
Q Consensus 263 ~~~ykVv~v~~~~-----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~--------------- 322 (468)
++.-|.|+.|+.. +.+..|..+-+|.....-. -..+|. ..+.++.+++++|++++-
T Consensus 213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G-~~PlPR---SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hek 288 (830)
T KOG4152|consen 213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG-VAPLPR---SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288 (830)
T ss_pred CCcceEEEEcccccccccceeEEecceeecccccccC-CCCCCc---ccccceeecceeEEecceeeeeccccccccccc
Confidence 4456788777643 4788899999998764211 111222 235677899999998740
Q ss_pred ----CCeEEEEECCCCeEEEeecC------CCCCCCCceEEEECCeEEEEEEEee------CCccEEEEEEEecC
Q 012227 323 ----PEGIVSYNMVTGVWKQFIIP------TPLHLNDHTLAECGGRIMLVGLLTK------NAATCVCIWELQKM 381 (468)
Q Consensus 323 ----~~~i~~fD~~~~~w~~i~~P------~p~~~~~~~l~~~~G~L~lv~~~~~------~~~~~i~Vw~ld~~ 381 (468)
...+-+.|+++..|..+.+- .|..+.+++.+..+.+||+-.+... +...+-++|-||.+
T Consensus 289 EWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 289 EWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 13577889999999876332 2344556788899999999876543 22345577877754
No 55
>smart00612 Kelch Kelch domain.
Probab=94.08 E-value=0.13 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=28.5
Q ss_pred EEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECC
Q 012227 316 LYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGG 357 (468)
Q Consensus 316 lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G 357 (468)
||++++. ...+..||+.+++|..+ .+++..+....++.++|
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPL-PSMPTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccC-CCCCCccccceEEEeCC
Confidence 5666542 13588999999999987 46776666666666654
No 56
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.07 E-value=2.8 Score=39.26 Aligned_cols=127 Identities=15% Similarity=0.185 Sum_probs=78.4
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCCeEE-EeecCCCCCC----------CCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVWK-QFIIPTPLHL----------NDHTLAECGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~-~i~~P~p~~~----------~~~~l~~~~G~L~lv~~~~~~~~~~i~V 375 (468)
..-|+.||.+|+-......|+.||+.++.-. ...+|..... ....+++-+..|.+|-.... ....+.|
T Consensus 72 tG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~-~~g~ivv 150 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED-NNGNIVV 150 (250)
T ss_pred CCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC-CCCcEEE
Confidence 4566789999998887789999999999877 5555543221 12556777888888765443 2234777
Q ss_pred EEEecCC----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC--CCCeEEEEECCCCcEEEccCCccC
Q 012227 376 WELQKMT----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR--QMNRLVTYNVMSREWLKVPGCVVP 446 (468)
Q Consensus 376 w~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~--~~~~l~~YD~~t~~w~~v~~~~~~ 446 (468)
=++|+.+ ..|.. .++...... ++..-|.+|...... ....-++||+.+++-+.+ ..+++
T Consensus 151 skld~~tL~v~~tw~T--~~~k~~~~n---------aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~ 215 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNT--SYPKRSAGN---------AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFP 215 (250)
T ss_pred EeeCcccCceEEEEEe--ccCchhhcc---------eeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeec
Confidence 8888753 45653 233332221 222236787633222 133458999998877654 33443
No 57
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=93.43 E-value=0.19 Score=33.79 Aligned_cols=33 Identities=12% Similarity=0.347 Sum_probs=18.7
Q ss_pred CCEEEEEeeeC----CCCeEEEEECCCCcEEEccCCc
Q 012227 412 KGLLMLSLRSR----QMNRLVTYNVMSREWLKVPGCV 444 (468)
Q Consensus 412 ~~~I~~~~~~~----~~~~l~~YD~~t~~w~~v~~~~ 444 (468)
++.||+..+.. ....++.||+++++|++++.+|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 46666633221 2347899999999999997665
No 58
>smart00284 OLF Olfactomedin-like domains.
Probab=93.34 E-value=2.8 Score=39.18 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=76.4
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCCeEEEe-ecCCCC----------CCCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQF-IIPTPL----------HLNDHTLAECGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i-~~P~p~----------~~~~~~l~~~~G~L~lv~~~~~~~~~~i~V 375 (468)
..-|+.||.+|+-......|+.||+.+++-... .+|... ......+++-+..|.+|-.... ....|.|
T Consensus 77 tG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~-~~g~ivv 155 (255)
T smart00284 77 TGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ-NAGKIVI 155 (255)
T ss_pred ccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC-CCCCEEE
Confidence 456778999999876667899999999987533 245321 1123567787888888765432 3356777
Q ss_pred EEEecCC----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEee--eCCCCeEEEEECCCCcEEEccCCccC
Q 012227 376 WELQKMT----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR--SRQMNRLVTYNVMSREWLKVPGCVVP 446 (468)
Q Consensus 376 w~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~--~~~~~~l~~YD~~t~~w~~v~~~~~~ 446 (468)
=+|++.+ ..|.. ..+..-..+ ++..-|.+|+... .......++||..+++-+. ...+++
T Consensus 156 SkLnp~tL~ve~tW~T--~~~k~sa~n---------aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~ 220 (255)
T smart00284 156 SKLNPATLTIENTWIT--TYNKRSASN---------AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFE 220 (255)
T ss_pred EeeCcccceEEEEEEc--CCCcccccc---------cEEEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeec
Confidence 8888753 45544 233222111 1112267776432 1223346899999987443 444444
No 59
>PTZ00421 coronin; Provisional
Probab=93.23 E-value=12 Score=38.95 Aligned_cols=154 Identities=12% Similarity=0.168 Sum_probs=70.7
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCC
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP 344 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p 344 (468)
.++..+.++.+.+||..++.-. ..+..... .-..+. -+|.+.+.+.....|-.||+.+++-... +...
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~--~~l~~h~~-------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H 209 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAV--EVIKCHSD-------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAH 209 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEE--EEEcCCCC-------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecC
Confidence 3444455667999998875421 11110000 011122 2576666666667888999987653221 2111
Q ss_pred CCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeC
Q 012227 345 LHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSR 422 (468)
Q Consensus 345 ~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~ 422 (468)
.......+.. .++.+.+..+........+.+|.+.......... .+... . ...+..+. .++.+++. +.
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~-----~--~~~~~~~d~d~~~L~lg--gk 279 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQS-----S--ALFIPFFDEDTNLLYIG--SK 279 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCC-----C--ceEEEEEcCCCCEEEEE--Ee
Confidence 1111111221 2333434333322234678999765432221111 11100 0 01111222 34555543 22
Q ss_pred CCCeEEEEECCCCcEEEc
Q 012227 423 QMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w~~v 440 (468)
..+.+.+||+.+++....
T Consensus 280 gDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 280 GEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCeEEEEEeeCCceEEE
Confidence 346789999998876554
No 60
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.89 E-value=0.22 Score=49.86 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred ccccceEEECC--EEEEEEcCC-----CeEEEEECCCCeEEEeecC--CCCCCCCceEEE--ECCeEEEEEEEee-----
Q 012227 304 NFRSQAVSVDG--ILYFMRSDP-----EGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAE--CGGRIMLVGLLTK----- 367 (468)
Q Consensus 304 ~~~~~~v~~~G--~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~--~~G~L~lv~~~~~----- 367 (468)
+..++.|...| ++|..++-. .-...|....+.|..+..- .|..+..+.++. ...+||+++.+-.
T Consensus 261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~ 340 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRN 340 (723)
T ss_pred cCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccc
Confidence 34577888777 999988632 1245688999999998543 244445555553 4569999886532
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCc--ceEEEEEecCCEEEEEeeeC------CCCeEEEEECCCCcEEE
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK--HVRMTCLGNKGLLMLSLRSR------QMNRLVTYNVMSREWLK 439 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~--~~~~~~~~~~~~I~~~~~~~------~~~~l~~YD~~t~~w~~ 439 (468)
.....-++|++|-.++.|..+. +...--. -.+. .-.+.+.+..+.||+..+.. ..+.++.||.....|..
T Consensus 341 ~~s~RsDfW~FDi~~~~W~~ls-~dt~~dG-GP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 341 SKSLRSDFWRFDIDTNTWMLLS-EDTAADG-GPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred ccccccceEEEecCCceeEEec-ccccccC-CcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 1123458999999999998762 2111000 0000 11344445566677643221 34579999999999987
Q ss_pred cc
Q 012227 440 VP 441 (468)
Q Consensus 440 v~ 441 (468)
+.
T Consensus 419 l~ 420 (723)
T KOG2437|consen 419 LR 420 (723)
T ss_pred HH
Confidence 64
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.75 E-value=0.22 Score=33.64 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.3
Q ss_pred CeEEEEECCCCcEEEccCCccCC
Q 012227 425 NRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 425 ~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
+.+++||+++++|++++..|.+|
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 57899999999999998877765
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.62 E-value=8.1 Score=35.34 Aligned_cols=153 Identities=20% Similarity=0.273 Sum_probs=77.6
Q ss_pred EEEEEEecCcEEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecC
Q 012227 267 KILWVGCDGEYEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIP 342 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P 342 (468)
+|++....+.+..+|..+++ |+.-. +.. .....+..++.+|+...+ ..+.++|..++ .|+.....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~--------~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDL--PGP--------ISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEEC--SSC--------GGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-S
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeec--ccc--------ccceeeecccccccccce-eeeEecccCCcceeeeecccc
Confidence 55555556678999976654 76432 111 122357789999998854 48999997765 67732222
Q ss_pred CCC-CC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227 343 TPL-HL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLS 418 (468)
Q Consensus 343 ~p~-~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~ 418 (468)
.+. .. ........++.+++.. ... .|+.++.. +..|+.-...+................+..++.||+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGT-SSG------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEE-TCS------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred ccccccccccCceEecCEEEEEe-ccC------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence 111 11 1223333455555433 111 55666644 3466664433321110000000112333345677764
Q ss_pred eeeCCCCeEEEEECCCCc--EEEc
Q 012227 419 LRSRQMNRLVTYNVMSRE--WLKV 440 (468)
Q Consensus 419 ~~~~~~~~l~~YD~~t~~--w~~v 440 (468)
.. .+.++.+|..+++ |+..
T Consensus 180 ~~---~g~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 180 SG---DGRVVAVDLATGEKLWSKP 200 (238)
T ss_dssp CC---TSSEEEEETTTTEEEEEEC
T ss_pred cC---CCeEEEEECCCCCEEEEec
Confidence 32 2346777999997 6443
No 63
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.56 E-value=8.8 Score=37.84 Aligned_cols=123 Identities=13% Similarity=0.209 Sum_probs=68.2
Q ss_pred CEEEEEEcCCCeEEEEECCCCe--EEE---eecCCCCCCCCceEEEE-CC-eEEEEEEEeeCCccEEEEEEEecCCCCeE
Q 012227 314 GILYFMRSDPEGIVSYNMVTGV--WKQ---FIIPTPLHLNDHTLAEC-GG-RIMLVGLLTKNAATCVCIWELQKMTLLWK 386 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~--w~~---i~~P~p~~~~~~~l~~~-~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~ 386 (468)
..+|+.....+.|..|+...+. +.. +.+|. ...-+.++.. +| .+|++. +....+.++.++..+..++
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~----e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVN----ELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEE----TTTTEEEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEEEcCCcCEEEEec----CCCCcEEEEeecccCCcee
Confidence 3466666666789999987765 533 22332 2222344443 55 455554 3346889999996667777
Q ss_pred EEEeeChhhhhcccCc-ce-EEEEEecCCEEEEEeeeCCCCeEEEEEC--CCCcEEEccCCcc
Q 012227 387 EVDRMPNIWCLDFYGK-HV-RMTCLGNKGLLMLSLRSRQMNRLVTYNV--MSREWLKVPGCVV 445 (468)
Q Consensus 387 ~v~~mp~~~~~~~~~~-~~-~~~~~~~~~~I~~~~~~~~~~~l~~YD~--~t~~w~~v~~~~~ 445 (468)
.+..++..-. .+.+. .. .+....++..||+..+. .+.|.+|++ ++++.+.+...+.
T Consensus 230 ~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 230 EIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp EEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEE
T ss_pred EEEEeeeccc-cccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeC
Confidence 7665532211 11111 11 22222356778875543 578888887 5567877765554
No 64
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.44 E-value=0.12 Score=34.88 Aligned_cols=40 Identities=15% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCeEEEEEEEee-CCccEEEEEEEecCCCCeEEEEeeChhh
Q 012227 356 GGRIMLVGLLTK-NAATCVCIWELQKMTLLWKEVDRMPNIW 395 (468)
Q Consensus 356 ~G~L~lv~~~~~-~~~~~i~Vw~ld~~~~~W~~v~~mp~~~ 395 (468)
+++||++++... .....-++|+++..+.+|+++..+|..+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 578889888762 3445568999999999999997777654
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.44 E-value=11 Score=34.41 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=96.7
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE---ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK---ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW 287 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~---~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W 287 (468)
.+|.+++.. ....++.+|+.|++.. .++.. .... ....+ -+|++...++.+..+|..++ .|
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~-~~~~-----~~~~~-------~~v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP-ISGA-----PVVDG-------GRVYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC-GGSG-----EEEET-------TEEEEEETTSEEEEEETTTSCEEE
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccc-ccce-----eeecc-------cccccccceeeeEecccCCcceee
Confidence 677777764 3458999999999854 23221 1111 12222 35665555556888886654 48
Q ss_pred cC-CCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCC--------CceEEEEC
Q 012227 288 TR-PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLN--------DHTLAECG 356 (468)
Q Consensus 288 ~~-~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~--------~~~l~~~~ 356 (468)
+. ....+.. . ........+.++.+|+... ...|.++|+.+++ |..- ...+.... ...++..+
T Consensus 101 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 101 SIYLTSSPPA-G----VRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp EEEE-SSCTC-S----TB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCT
T ss_pred eecccccccc-c----cccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEEC
Confidence 73 3221111 0 0112223334777777664 4689999998764 5542 33322111 12333346
Q ss_pred CeEEEEEEEeeCCccEEEEEEEecCCC--CeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227 357 GRIMLVGLLTKNAATCVCIWELQKMTL--LWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 357 G~L~lv~~~~~~~~~~i~Vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t 434 (468)
|.+|+.... .. +..+|..++ .|+. . +... .......++.||+.. ..+.++++|+++
T Consensus 174 ~~v~~~~~~----g~---~~~~d~~tg~~~w~~-~-~~~~----------~~~~~~~~~~l~~~~---~~~~l~~~d~~t 231 (238)
T PF13360_consen 174 GRVYVSSGD----GR---VVAVDLATGEKLWSK-P-ISGI----------YSLPSVDGGTLYVTS---SDGRLYALDLKT 231 (238)
T ss_dssp TEEEEECCT----SS---EEEEETTTTEEEEEE-C-SS-E----------CECEECCCTEEEEEE---TTTEEEEEETTT
T ss_pred CEEEEEcCC----Ce---EEEEECCCCCEEEEe-c-CCCc----------cCCceeeCCEEEEEe---CCCEEEEEECCC
Confidence 766664421 12 333344433 3732 2 2210 011345678887743 357999999999
Q ss_pred CcEEE
Q 012227 435 REWLK 439 (468)
Q Consensus 435 ~~w~~ 439 (468)
++..+
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 97554
No 66
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.20 E-value=13 Score=34.91 Aligned_cols=216 Identities=13% Similarity=0.159 Sum_probs=114.9
Q ss_pred ecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCC
Q 012227 186 YDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSG 265 (468)
Q Consensus 186 ~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ 265 (468)
.||.++.....+|..-...+.++ ++-.++.-+. +... .+.-++|.|.+..+.|.+...-.. ..-..++|+ .
T Consensus 88 LdP~tGev~~ypLg~Ga~Phgiv-~gpdg~~Wit-d~~~-aI~R~dpkt~evt~f~lp~~~a~~-nlet~vfD~-----~ 158 (353)
T COG4257 88 LDPATGEVETYPLGSGASPHGIV-VGPDGSAWIT-DTGL-AIGRLDPKTLEVTRFPLPLEHADA-NLETAVFDP-----W 158 (353)
T ss_pred cCCCCCceEEEecCCCCCCceEE-ECCCCCeeEe-cCcc-eeEEecCcccceEEeecccccCCC-cccceeeCC-----C
Confidence 45655554444444332233333 5555543333 2222 688899999998887765211111 111123442 1
Q ss_pred eEEEEEEecC----------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe
Q 012227 266 YKILWVGCDG----------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 266 ykVv~v~~~~----------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
..+-..+..+ .++||..-.+. -| +.-++.-+|.+|+-....+.|.-.|+.+..
T Consensus 159 G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------gp-----------yGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 159 GNLWFTGQIGAYGRLDPARNVISVFPAPQGG------GP-----------YGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred ccEEEeeccccceecCcccCceeeeccCCCC------CC-----------cceEECCCCcEEEEeccccceEEcccccCC
Confidence 2232222211 14444322110 00 111333489998876555689999999987
Q ss_pred EEEeecCCCCCCCCceE-EEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCE
Q 012227 336 WKQFIIPTPLHLNDHTL-AECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGL 414 (468)
Q Consensus 336 w~~i~~P~p~~~~~~~l-~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~ 414 (468)
-..++.|.+.......+ +...|++.+..- ..-.+.++|+....|.+- .||..--.. .-..+.+-|.
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittw------g~g~l~rfdPs~~sW~ey-pLPgs~arp------ys~rVD~~gr 288 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFDPSVTSWIEY-PLPGSKARP------YSMRVDRHGR 288 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEecc------CCceeeEeCcccccceee-eCCCCCCCc------ceeeeccCCc
Confidence 77766665533333333 234577765421 122567778877778774 444321110 1234555678
Q ss_pred EEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 415 LMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 415 I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
|++. ....+.|..||+++.+.+.++.
T Consensus 289 VW~s--ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 289 VWLS--EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred EEee--ccccCceeecCcccceEEEecC
Confidence 8763 2345789999999999998865
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.15 E-value=18 Score=36.33 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=98.5
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCc--eEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC--
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQS--FKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-- 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~--~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-- 286 (468)
..+|.|++... ...++.+|+.|++ |+. ++.. . .. .-...+ -+|++...++.+..+|..+++
T Consensus 118 v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~-~--~s---sP~v~~-------~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 118 VAGGKVYIGSE-KGQVYALNAEDGEVAWQTKVAGE-A--LS---RPVVSD-------GLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred EECCEEEEEcC-CCEEEEEECCCCCCcccccCCCc-e--ec---CCEEEC-------CEEEEECCCCEEEEEEccCCCEe
Confidence 34677766543 3478999999987 432 2221 0 00 001112 356654455568888987665
Q ss_pred ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCC--------CCceEEEEC
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHL--------NDHTLAECG 356 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~--------~~~~l~~~~ 356 (468)
|+.-...+. ........++..+|.+|+... ...+.++|..++ .|+.- ...+... ....-+..+
T Consensus 184 W~~~~~~~~-----~~~~~~~sP~v~~~~v~~~~~-~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 184 WTVNLDVPS-----LTLRGESAPATAFGGAIVGGD-NGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred eeecCCCCc-----ccccCCCCCEEECCEEEEEcC-CCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEEC
Confidence 875432211 001112345667888887654 457899999876 46531 2111110 112334568
Q ss_pred CeEEEEEEEeeCCccEEEEEEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227 357 GRIMLVGLLTKNAATCVCIWELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 357 G~L~lv~~~~~~~~~~i~Vw~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t 434 (468)
|.||+.... . .++.+|..+ ..|+.- .+. . ...+..++.||+.. ..+.++++|.++
T Consensus 257 ~~vy~~~~~-g------~l~ald~~tG~~~W~~~--~~~-----~------~~~~~~~~~vy~~~---~~g~l~ald~~t 313 (394)
T PRK11138 257 GVVYALAYN-G------NLVALDLRSGQIVWKRE--YGS-----V------NDFAVDGGRIYLVD---QNDRVYALDTRG 313 (394)
T ss_pred CEEEEEEcC-C------eEEEEECCCCCEEEeec--CCC-----c------cCcEEECCEEEEEc---CCCeEEEEECCC
Confidence 888876531 1 456666543 467652 110 0 01123478888743 346899999998
Q ss_pred CcE
Q 012227 435 REW 437 (468)
Q Consensus 435 ~~w 437 (468)
++-
T Consensus 314 G~~ 316 (394)
T PRK11138 314 GVE 316 (394)
T ss_pred CcE
Confidence 853
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.60 E-value=7.2 Score=36.21 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
+|.|||.......|..+|+.+++...+..|.+ ..++.. +|+|++... ..+. .+|..+++++.+..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~------~~~~--~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADS------GGIA--VVDPDTGKVTVLAD 77 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEET------TCEE--EEETTTTEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEc------CceE--EEecCCCcEEEEee
Confidence 69999999877899999999999887766552 223333 678776542 2223 33767788888877
Q ss_pred eChhhhhcccCcceEEEEEecCCEEEEEeeeCC----C--CeEEEEECCCCcEEEc
Q 012227 391 MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ----M--NRLVTYNVMSREWLKV 440 (468)
Q Consensus 391 mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~----~--~~l~~YD~~t~~w~~v 440 (468)
.+..... +. ...-.++..+|.+|+...... . +.++.++.+ ++.+.+
T Consensus 78 ~~~~~~~-~~--~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 78 LPDGGVP-FN--RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTCSC-TE--EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ccCCCcc-cC--CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 7321100 00 011234445677887433221 1 568999998 666655
No 69
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.66 E-value=2.8 Score=39.05 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=76.9
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC----cEEEEeCCC----CCccCCCC-CCCC
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG----EYEIYDSLR----NSWTRPGS-MPSN 296 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~----~v~vy~s~t----~~W~~~~~-~p~~ 296 (468)
.-.+|||.|++++.+... .. ..++-+ ..-.+.+++.+|++. .+.+|++.+ ..|.+... |...
T Consensus 47 ~s~~yD~~tn~~rpl~v~-td--~FCSgg------~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ-TD--TFCSGG------AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccCC-CC--CcccCc------CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC
Confidence 357899999999988753 11 112111 112235777777753 388888764 67876643 3322
Q ss_pred cccCcccccccceE-EECCEEEEEEcCCCeEEEEECC-CCeEEEeecCCCC-------CCCCceEEE-ECCeEEEEEEEe
Q 012227 297 IKLPVSLNFRSQAV-SVDGILYFMRSDPEGIVSYNMV-TGVWKQFIIPTPL-------HLNDHTLAE-CGGRIMLVGLLT 366 (468)
Q Consensus 297 ~~~~~~~~~~~~~v-~~~G~lY~~~~~~~~i~~fD~~-~~~w~~i~~P~p~-------~~~~~~l~~-~~G~L~lv~~~~ 366 (468)
+++...+ .-||.+.++++.......|-+. ......+.++... ....+.+-. -+|+|++.+...
T Consensus 118 -------RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 118 -------RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred -------CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 3444343 3489999998754333333333 1111111122111 111233333 499999877432
Q ss_pred eCCccEEEEEEEecCCCCe-EEEEeeChh
Q 012227 367 KNAATCVCIWELQKMTLLW-KEVDRMPNI 394 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W-~~v~~mp~~ 394 (468)
. .|| |..++++ ..+..||..
T Consensus 191 s------~i~--d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 S------IIY--DYKTNTVVRTLPDLPGG 211 (243)
T ss_pred c------EEE--eCCCCeEEeeCCCCCCC
Confidence 1 344 6655655 455566643
No 70
>PLN02772 guanylate kinase
Probab=89.59 E-value=2.3 Score=42.33 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=50.8
Q ss_pred ccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEeec--CCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEE
Q 012227 306 RSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQFII--PTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 306 ~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw 376 (468)
...++.+++++|++++.. ..+.+||..+.+|..... +.|..+.++..+.+ +++|+++..... ..-++|
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---~~~~~w 103 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---PDDSIW 103 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC---CccceE
Confidence 456788999999998621 258899999999987432 23444555666666 789998875332 224788
Q ss_pred EEecC
Q 012227 377 ELQKM 381 (468)
Q Consensus 377 ~ld~~ 381 (468)
-|+-.
T Consensus 104 ~l~~~ 108 (398)
T PLN02772 104 FLEVD 108 (398)
T ss_pred EEEcC
Confidence 88754
No 71
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.50 E-value=23 Score=34.94 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=81.1
Q ss_pred CcceecCCCCcccCCCCCCCCC-CcEEEEeeecCceEEEEEcCC-----c-----eE--EEEcCC--------CCceEec
Q 012227 182 SGAMYDPSLKKWHHPTISSLPT-KMIILPVASAGGLVCFLDIGH-----R-----NF--YVCNPL--------TQSFKEL 240 (468)
Q Consensus 182 ~~~~~dp~~~~w~~~~l~~~p~-~~~~~~~~s~~GLl~~~~~~~-----~-----~~--~V~NP~--------T~~~~~L 240 (468)
....||..+.... ..|.+.. +..-+.++. +|-|++.+... . .+ +++++. +=.|..|
T Consensus 87 ~t~vyDt~t~av~--~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L 163 (342)
T PF07893_consen 87 RTLVYDTDTRAVA--TGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSL 163 (342)
T ss_pred CeEEEECCCCeEe--ccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcC
Confidence 3568998877554 3444332 111221333 44465554321 0 33 344532 2258889
Q ss_pred CCCCcCCcc------eeEEEEEEcCCCCCCCeEEEE-EEec-CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE
Q 012227 241 PARSVKVWS------RVAVGMTLNGNSTSSGYKILW-VGCD-GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV 312 (468)
Q Consensus 241 P~~~~~~~~------~~~~~~~~d~~~~~~~ykVv~-v~~~-~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~ 312 (468)
|++++.... ....++. |+ -.|++ +.+. .+...||..+.+|+..+.- .+|+ ...+.++
T Consensus 164 P~PPf~~~~~~~~~~i~sYavv-~g------~~I~vS~~~~~~GTysfDt~~~~W~~~GdW----~LPF----~G~a~y~ 228 (342)
T PF07893_consen 164 PPPPFVRDRRYSDYRITSYAVV-DG------RTIFVSVNGRRWGTYSFDTESHEWRKHGDW----MLPF----HGQAEYV 228 (342)
T ss_pred CCCCccccCCcccceEEEEEEe-cC------CeEEEEecCCceEEEEEEcCCcceeeccce----ecCc----CCccEEC
Confidence 988654432 2233333 32 23332 2211 2478899999999988641 1222 3344444
Q ss_pred CCEEEEEEc--CC--CeEEEEECCCC-----------eEEEeecCCCCCCCCceEEEE-CCeEEEEEEE
Q 012227 313 DGILYFMRS--DP--EGIVSYNMVTG-----------VWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLL 365 (468)
Q Consensus 313 ~G~lY~~~~--~~--~~i~~fD~~~~-----------~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~ 365 (468)
...=-|++- .. ..+-+.|+... .|..+..|.........|+.+ +|+.|++...
T Consensus 229 ~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~~~~~~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 229 PELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPEEWRHVGATLVYLGSGRFCIVEFF 297 (342)
T ss_pred CCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccccccccCceEEECCCCCEEEEEEe
Confidence 333344442 22 36778887652 233332232222334566655 5677766543
No 72
>PTZ00420 coronin; Provisional
Probab=88.64 E-value=36 Score=36.07 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=75.4
Q ss_pred eEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCC
Q 012227 266 YKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPT 343 (468)
Q Consensus 266 ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~ 343 (468)
+.++..+.++.+.+||..++. .+..+... . .-.++. -+|.+...+.....|..||+.+++-.. .+..
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~--~~~~i~~~----~----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~g 207 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEK--RAFQINMP----K----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHI 207 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCc--EEEEEecC----C----cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEec
Confidence 333444556779999988654 11000000 0 011222 367766666555679999998875432 1222
Q ss_pred CCCCCCceEE---E--ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEE-EE-ecCCEEE
Q 012227 344 PLHLNDHTLA---E--CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT-CL-GNKGLLM 416 (468)
Q Consensus 344 p~~~~~~~l~---~--~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~-~~-~~~~~I~ 416 (468)
.........+ . .++...+.++..+.....+.||.+.... .-.....+... .+ .+. .. ...+.+|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~-----~~---~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNA-----SA---PLIPHYDESTGLIY 278 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCC-----cc---ceEEeeeCCCCCEE
Confidence 1111111111 1 2445545444433233579999766421 11111111110 00 111 11 2346776
Q ss_pred EEeeeCCCCeEEEEECCCCcEEEccCC
Q 012227 417 LSLRSRQMNRLVTYNVMSREWLKVPGC 443 (468)
Q Consensus 417 ~~~~~~~~~~l~~YD~~t~~w~~v~~~ 443 (468)
+.. ...+.+.+|++..+....+..+
T Consensus 279 lsG--kGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 279 LIG--KGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred EEE--ECCCeEEEEEccCCcEEeeccc
Confidence 643 2357899999988877776544
No 73
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=87.95 E-value=1.2 Score=44.91 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=84.0
Q ss_pred EcCCCCceEecCCCCcC-------CcceeEEEEEEcCCCCCCCeEEEEEEecCc------EEEEeCCCCCccCCCCCCCC
Q 012227 230 CNPLTQSFKELPARSVK-------VWSRVAVGMTLNGNSTSSGYKILWVGCDGE------YEIYDSLRNSWTRPGSMPSN 296 (468)
Q Consensus 230 ~NP~T~~~~~LP~~~~~-------~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~------v~vy~s~t~~W~~~~~~p~~ 296 (468)
--|.+-.|..+|+...+ ...+...-|+++ . ++--|+.-|+-++ .+.|+-+.+.|..+..-..
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~--~--~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~- 308 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVID--V--QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE- 308 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEe--C--CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC-
Confidence 45677788888875321 111222335544 1 2234555565432 7889999999987743111
Q ss_pred cccCcccccccceEEE--CCEEEEEEcC-----------CCeEEEEECCCCeEEEeecCCC-----CCCCCceEEEECCe
Q 012227 297 IKLPVSLNFRSQAVSV--DGILYFMRSD-----------PEGIVSYNMVTGVWKQFIIPTP-----LHLNDHTLAECGGR 358 (468)
Q Consensus 297 ~~~~~~~~~~~~~v~~--~G~lY~~~~~-----------~~~i~~fD~~~~~w~~i~~P~p-----~~~~~~~l~~~~G~ 358 (468)
.|. .+..+..|.- ..++|.++.. ..-+..||..++.|..+..... .....+.+++.+.+
T Consensus 309 --~PG-~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k 385 (723)
T KOG2437|consen 309 --GPG-ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK 385 (723)
T ss_pred --CCc-chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence 111 1223344433 3478887641 1348899999999998744322 22234666666555
Q ss_pred --EEEEEEEee--CCccEEEEEEEecCCCCeEE
Q 012227 359 --IMLVGLLTK--NAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 359 --L~lv~~~~~--~~~~~i~Vw~ld~~~~~W~~ 387 (468)
||+.++..- +....-.+|.++.....|+.
T Consensus 386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 386 HMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred ceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 888887543 11223356667766667765
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.79 E-value=31 Score=34.29 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=57.5
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE---ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK---ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW 287 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~---~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W 287 (468)
.+|.|++.... ..++.+|+.|++-. .++.. .. .+...+ +-+|++...++.+..+|..++ .|
T Consensus 64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~-~~------~~p~v~------~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDER-LS------GGVGAD------GGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCC-cc------cceEEc------CCEEEEEcCCCEEEEEECCCCcEee
Confidence 36666665533 46888999988743 23331 10 111112 235665445566888887654 48
Q ss_pred cCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQ 338 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~ 338 (468)
+.-.. .. ....++..++.+|+... ...+.++|..++ .|+.
T Consensus 130 ~~~~~--~~--------~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 130 RAKLS--SE--------VLSPPLVANGLVVVRTN-DGRLTALDAATGERLWTY 171 (377)
T ss_pred eeccC--ce--------eecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEE
Confidence 64321 11 12345557888887653 457999999865 4654
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.82 E-value=37 Score=34.22 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=64.6
Q ss_pred EECCEEEEEEcC---CCeEEEEECCCCe---EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227 311 SVDGILYFMRSD---PEGIVSYNMVTGV---WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLL 384 (468)
Q Consensus 311 ~~~G~lY~~~~~---~~~i~~fD~~~~~---w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~ 384 (468)
..++.+|+++.. ...|+.+|+.+.. |..+-+|......-..+...++.|++.... +....+.|+ +.. ..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~--~~~~~l~v~--~~~-~~ 359 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE--NGSSRLRVY--DLD-DG 359 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE--TTEEEEEEE--ETT--T
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE--CCccEEEEE--ECC-CC
Confidence 458899988752 3579999998764 664424433222223445568888765542 334455555 442 24
Q ss_pred eEEE-EeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-CCCeEEEEECCCCcEEEcc
Q 012227 385 WKEV-DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-QMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 385 W~~v-~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-~~~~l~~YD~~t~~w~~v~ 441 (468)
|... ..+|.... . .....-..++.++|...+. ....++.||+.+++.+.+.
T Consensus 360 ~~~~~~~~p~~g~--v----~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 360 KESREIPLPEAGS--V----SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEESSSSSE--E----EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred cEEeeecCCcceE--E----eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 4443 23332110 0 0111112467787765544 4568999999999988763
No 76
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=86.49 E-value=8 Score=32.13 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=49.5
Q ss_pred eEEEEECCCC--eEEEeecCCCCCC------------CCceEEEECCeEEEEEEEeeC------CccEEEEEEEec---C
Q 012227 325 GIVSYNMVTG--VWKQFIIPTPLHL------------NDHTLAECGGRIMLVGLLTKN------AATCVCIWELQK---M 381 (468)
Q Consensus 325 ~i~~fD~~~~--~w~~i~~P~p~~~------------~~~~l~~~~G~L~lv~~~~~~------~~~~i~Vw~ld~---~ 381 (468)
+|+.+|+..+ ..+.|++|.+... ....++..+|+|-+|...... ....+..|.|.. .
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5777887754 6677777765321 135677889999999876542 356899999998 4
Q ss_pred CCCeEEEEeeCh
Q 012227 382 TLLWKEVDRMPN 393 (468)
Q Consensus 382 ~~~W~~v~~mp~ 393 (468)
..+|++-..+..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 689999876653
No 77
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=84.63 E-value=21 Score=34.54 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=59.8
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
.+.+||.......|..+|+.++.-+....|... ....+..-+|.|.... ..+.++.. +....|+.+....
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~g~Lv~~~-------~g~~~~~~-~~~~~~t~~~~~~ 105 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAGGRLIACE-------HGVRLLDP-DTGGKITLLAEPE 105 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECCCCc--ccceeecCCCeEEEEc-------cccEEEec-cCCceeEEecccc
Confidence 357899887777899999998877766555432 3333344455554332 11222322 2233444444332
Q ss_pred hhhhhcccCcceEEEEEecCCEEEEEeee---------CCCCeEEEEECCCCcEEEccC
Q 012227 393 NIWCLDFYGKHVRMTCLGNKGLLMLSLRS---------RQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~---------~~~~~l~~YD~~t~~w~~v~~ 442 (468)
...-.... --..+.-.|.+||.... ...+.++.||+....-+.+..
T Consensus 106 ~~~~~~r~----ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~ 160 (307)
T COG3386 106 DGLPLNRP----NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD 160 (307)
T ss_pred CCCCcCCC----CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC
Confidence 22111000 01233345667663333 234579999986555555554
No 78
>PF13854 Kelch_5: Kelch motif
Probab=84.38 E-value=2.1 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=26.7
Q ss_pred CCCCCceEEEECCeEEEEEEEee-CCccEEEEEEEec
Q 012227 345 LHLNDHTLAECGGRIMLVGLLTK-NAATCVCIWELQK 380 (468)
Q Consensus 345 ~~~~~~~l~~~~G~L~lv~~~~~-~~~~~i~Vw~ld~ 380 (468)
..+..+..+..+++||+.++... .....-++|+|+.
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 34566778889999999999873 3444558888875
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.28 E-value=21 Score=33.53 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=61.6
Q ss_pred ECCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227 312 VDGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 312 ~~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
-+|.+|--++. ...|..+|+.+++.... .++|....+-.++..+++||.+.-.++ ..+++|. ...+++.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~------~~f~yd~--~tl~~~~ 124 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG------TGFVYDP--NTLKKIG 124 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS------EEEEEET--TTTEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC------eEEEEcc--ccceEEE
Confidence 46888887752 34688999999876542 445555566678888999998874332 4566676 3466665
Q ss_pred eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+.+-.- ..++...++..++++.+ ..++...|+++=
T Consensus 125 ~~~y~~--------EGWGLt~dg~~Li~SDG---S~~L~~~dP~~f 159 (264)
T PF05096_consen 125 TFPYPG--------EGWGLTSDGKRLIMSDG---SSRLYFLDPETF 159 (264)
T ss_dssp EEE-SS--------S--EEEECSSCEEEE-S---SSEEEEE-TTT-
T ss_pred EEecCC--------cceEEEcCCCEEEEECC---ccceEEECCccc
Confidence 553210 01333345666665433 468888888764
No 80
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=83.57 E-value=18 Score=36.29 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=58.1
Q ss_pred ECCE-EEEEEcCCCeEEEEECCCCeEEEeecCCCCCC--CCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227 312 VDGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL--NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV 388 (468)
Q Consensus 312 ~~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~--~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v 388 (468)
-+|. .-+.++....+.+||+.+.+...+..|-.... ....-+.-++...++.+... .|..|...+++|---
T Consensus 267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITS 340 (514)
T ss_pred CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhe
Confidence 3665 44444455789999999999988765543321 11222333555544444322 455556555666544
Q ss_pred EeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
..|+.... .+....++..|+++ . ..+.|+++|+.++.
T Consensus 341 ~KieG~v~--------~~~fsSdsk~l~~~-~--~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 341 FKIEGVVS--------DFTFSSDSKELLAS-G--GTGEVYVWNLRQNS 377 (514)
T ss_pred eeeccEEe--------eEEEecCCcEEEEE-c--CCceEEEEecCCcc
Confidence 34432211 12222344444443 2 24589999998884
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.58 E-value=60 Score=31.18 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=45.2
Q ss_pred EecCcEEEEeCCCCC-ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc
Q 012227 272 GCDGEYEIYDSLRNS-WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH 350 (468)
Q Consensus 272 ~~~~~v~vy~s~t~~-W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~ 350 (468)
.....+.+|-+++-+ -+.+. +|.. .....+.++..-.++.+...|..+|.....--....-.+.+....
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~-~~~r---------~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIE-NPKR---------ILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred EeccEEEEEecccHhHhhhhh-cccc---------ceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 344568888776533 22221 1111 122333455555556666788888887632211101111111122
Q ss_pred eEEEECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 351 TLAECGGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 351 ~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
....-...-|++....+ ..|+||.++..
T Consensus 256 ~~~~~~~~~~lvTaSSD---G~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSD---GFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccC---ceEEEEEcccc
Confidence 22222233344444332 57899987754
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.15 E-value=48 Score=34.86 Aligned_cols=119 Identities=18% Similarity=0.318 Sum_probs=64.4
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEee-cCCCCC------CCCceEEEECCeEEEEEEEeeCCccEEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFI-IPTPLH------LNDHTLAECGGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~-~P~p~~------~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
+.+++.+|.+|+.+.. ..|.++|..++ .|+.-. .+.... .....++..+|++|+... .. .++.
T Consensus 63 stPvv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg------~l~A 134 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DA------RLVA 134 (527)
T ss_pred cCCEEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CC------EEEE
Confidence 4567789999996643 47999998874 676531 111110 112334566788876432 11 5777
Q ss_pred EecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEE
Q 012227 378 LQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLK 439 (468)
Q Consensus 378 ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~ 439 (468)
||..+ ..|+.-. .... . .+...... .+ .+|.||+..... ..+.++.||+++++..+
T Consensus 135 LDa~TGk~~W~~~~--~~~~-~-~~~~tssP-~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 135 LDAKTGKVVWSKKN--GDYK-A-GYTITAAP-LV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EECCCCCEEeeccc--cccc-c-cccccCCc-EE-ECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 77653 4676432 1000 0 00000111 12 267787743321 24689999999996444
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=78.99 E-value=77 Score=32.05 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=78.9
Q ss_pred Cce-EEEEEcCCceEEEEcCCCCceEecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 214 GGL-VCFLDIGHRNFYVCNPLTQSFKELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 214 ~GL-l~~~~~~~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+|- +++..+...-++.||-.|.+...+-++. ........+.+..| +. -|+..|..+.+.+....|+.|-..-
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-----~~-fia~~G~~G~I~lLhakT~eli~s~ 341 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-----SN-FIAIAGNNGHIHLLHAKTKELITSF 341 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC-----CC-eEEEcccCceEEeehhhhhhhhhee
Confidence 444 5555555556899999999999887762 22111122222222 11 2333344556899999999885332
Q ss_pred CCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCc
Q 012227 292 SMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAA 370 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~ 370 (468)
.++..+ ..-...-+|+.-|+.+....|.++|+........ .-......+..++. .+|.++.+|. +.
T Consensus 342 KieG~v--------~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r-f~D~G~v~gts~~~S~ng~ylA~GS----~~ 408 (514)
T KOG2055|consen 342 KIEGVV--------SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR-FVDDGSVHGTSLCISLNGSYLATGS----DS 408 (514)
T ss_pred eeccEE--------eeEEEecCCcEEEEEcCCceEEEEecCCcceEEE-EeecCccceeeeeecCCCceEEecc----Cc
Confidence 222110 1112224666666655556899999988743322 11112223334443 4777554442 23
Q ss_pred cEEEEEEEec
Q 012227 371 TCVCIWELQK 380 (468)
Q Consensus 371 ~~i~Vw~ld~ 380 (468)
..+.||..+.
T Consensus 409 GiVNIYd~~s 418 (514)
T KOG2055|consen 409 GIVNIYDGNS 418 (514)
T ss_pred ceEEEeccch
Confidence 5678886554
No 84
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.71 E-value=72 Score=31.60 Aligned_cols=185 Identities=18% Similarity=0.197 Sum_probs=93.7
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC--cc
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS--WT 288 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~--W~ 288 (468)
+..++.+++... ...++.+|+.|++-..--...... ....... +.+|++...++.+..+|..+++ |+
T Consensus 102 ~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~---~~~p~v~-------~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 102 GADGGLVFVGTE-KGEVIALDAEDGKELWRAKLSSEV---LSPPLVA-------NGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred EEcCCEEEEEcC-CCEEEEEECCCCcEeeeeccCcee---ecCCEEE-------CCEEEEECCCCeEEEEEcCCCceeeE
Confidence 344677776543 347899999888743211111000 0000111 1356655555668888887654 76
Q ss_pred CCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCC--------CCceEEEECCe
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHL--------NDHTLAECGGR 358 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~--------~~~~l~~~~G~ 358 (468)
.-...+. ........++..+|.+|+-. ....+.++|+.++ .|+.- ...+... .....+..+|.
T Consensus 171 ~~~~~~~-----~~~~~~~sp~~~~~~v~~~~-~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~~~~ 243 (377)
T TIGR03300 171 YSRVTPA-----LTLRGSASPVIADGGVLVGF-AGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVDGGQ 243 (377)
T ss_pred EccCCCc-----eeecCCCCCEEECCEEEEEC-CCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEECCE
Confidence 4322111 00011234566788776544 4457999999776 46531 2111100 11223445788
Q ss_pred EEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 359 IMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 359 L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
+|+.... . .++.++.. +..|..- .+. . ..+ +..++.||+.. ..+.++++|..+++
T Consensus 244 vy~~~~~-----g--~l~a~d~~tG~~~W~~~--~~~-----~----~~p--~~~~~~vyv~~---~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 244 VYAVSYQ-----G--RVAALDLRSGRVLWKRD--ASS-----Y----QGP--AVDDNRLYVTD---ADGVVVALDRRSGS 300 (377)
T ss_pred EEEEEcC-----C--EEEEEECCCCcEEEeec--cCC-----c----cCc--eEeCCEEEEEC---CCCeEEEEECCCCc
Confidence 7775431 1 34445543 3456542 110 0 011 12367887743 34689999998875
No 85
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.04 E-value=9.6 Score=39.08 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=61.4
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
..+|-+++.+.+..++.||||+.++-. -.+. .+......+-|+ +.+++-.|+.-.++..+.+||...-+=+..
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFv----P~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFV----PYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeee----ccCCCeEEEeccCcceEEEEeccccccccc
Confidence 357888888887789999999954433 2221 122222223333 445555555555677799998764221111
Q ss_pred CCCCCCcccCccc-----ccccc-eEEECC-EEEEEEcCCCeEEEEECCC
Q 012227 291 GSMPSNIKLPVSL-----NFRSQ-AVSVDG-ILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 291 ~~~p~~~~~~~~~-----~~~~~-~v~~~G-~lY~~~~~~~~i~~fD~~~ 333 (468)
......+... +.... ++.=+| ..+|.+.+.+.|..||+..
T Consensus 133 ---d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 133 ---DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ---ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 1111111000 00011 122244 7889888888899999865
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.40 E-value=76 Score=31.17 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=67.5
Q ss_pred CEEEEEEcCCCeEEEEECC--CCeEEEeec-C-CCCCC----CCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227 314 GILYFMRSDPEGIVSYNMV--TGVWKQFII-P-TPLHL----NDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLL 384 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~--~~~w~~i~~-P-~p~~~----~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~ 384 (468)
..+|++......|.+|+.. +..+..+.. + .|... ....+... +|+..+|.- .....|.++.++..++.
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn---r~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN---RGSNSISVFDLDPATGT 280 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE---CTTTEEEEEEECTTTTT
T ss_pred CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe---ccCCEEEEEEEecCCCc
Confidence 4678888766778888776 667766421 1 11111 12334444 666544443 23578999999877777
Q ss_pred eEEEEeeChhhhhcccCcceEEEEE-ecCCEEEEEeeeCCCCeEEEE--ECCCCcEEEcc
Q 012227 385 WKEVDRMPNIWCLDFYGKHVRMTCL-GNKGLLMLSLRSRQMNRLVTY--NVMSREWLKVP 441 (468)
Q Consensus 385 W~~v~~mp~~~~~~~~~~~~~~~~~-~~~~~I~~~~~~~~~~~l~~Y--D~~t~~w~~v~ 441 (468)
-+.+..++.. +..-+...+ ..++.||+.. ...+.+.+| |.+++.++.+.
T Consensus 281 l~~~~~~~~~------G~~Pr~~~~s~~g~~l~Va~--~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 281 LTLVQTVPTG------GKFPRHFAFSPDGRYLYVAN--QDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEEES------SSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCC------CCCccEEEEeCCCCEEEEEe--cCCCeEEEEEEeCCCCcEEEec
Confidence 7777666531 111112223 3566776643 334567666 56788888875
No 87
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=77.28 E-value=40 Score=31.29 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=69.5
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCCeE-EEeecCCCCC----------CCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVW-KQFIIPTPLH----------LNDHTLAECGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P~p~~----------~~~~~l~~~~G~L~lv~~~~~~~~~~i~V 375 (468)
..-|+.+|.+|+-......|+.||+.++.- ....+|.... ....-+++-+..|.++-... ++...+.|
T Consensus 71 Tg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~-~~~g~iv~ 149 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP-ENAGTIVL 149 (249)
T ss_pred cceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc-ccCCcEEe
Confidence 456778999999887777899999988432 1112343211 12356777777888776543 33345556
Q ss_pred EEEecC----CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC-CCeE-EEEECCCCcEEEcc
Q 012227 376 WELQKM----TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ-MNRL-VTYNVMSREWLKVP 441 (468)
Q Consensus 376 w~ld~~----~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~-~~~l-~~YD~~t~~w~~v~ 441 (468)
-+|++. ...|..- ++..... .++..-|.+|+...... ...+ ++||..+++-+.+.
T Consensus 150 skLdp~tl~~e~tW~T~--~~k~~~~---------~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ 210 (249)
T KOG3545|consen 150 SKLDPETLEVERTWNTT--LPKRSAG---------NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERID 210 (249)
T ss_pred eccCHHHhheeeeeccc--cCCCCcC---------ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccc
Confidence 788874 3456331 2222111 11111266766322222 2233 79999988876544
No 88
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.04 E-value=61 Score=29.89 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=59.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC----c
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS----W 287 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~----W 287 (468)
-.+|-.|+.-+..+.+-+|||+.+....-=.-. -....-++..+ ++-|+..-|++..+.+||..+++ |
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--G~EVlD~~~s~------Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--GHEVLDAALSS------DNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccccceeeeecCC--Cceeeeccccc------cccccccCCCCceEEEEEcccCeeeeec
Confidence 346666777666778999999988765432211 11111122233 34466655667779999998875 4
Q ss_pred cCCCCCCCCcccCcccccccceEEECCEE--EEEEcCCCeEEEEECCCCeEEEeec
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSVDGIL--YFMRSDPEGIVSYNMVTGVWKQFII 341 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~l--Y~~~~~~~~i~~fD~~~~~w~~i~~ 341 (468)
+-... .-..|.+|..- -+-++-...+-++|-....+..|++
T Consensus 98 rgH~a-------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 98 RGHLA-------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccccc-------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 32211 11233333222 2222233567778877777766543
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.80 E-value=1.7 Score=43.07 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=34.8
Q ss_pred ccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcc
Q 012227 120 KEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHS 157 (468)
Q Consensus 120 ~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~ 157 (468)
..||.|++..||+-|..+++.|++.+|+.|+-+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 57999999999999999999999999999998877653
No 90
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=75.10 E-value=30 Score=33.59 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=44.3
Q ss_pred ceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 308 QAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 308 ~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
..|-++.++-+-+++...|-+.|+.|.++-.+ ...+..+...+.++|+|.+-+. . ..+|.+|....
T Consensus 324 NvVdfd~kyIVsASgDRTikvW~~st~efvRt---l~gHkRGIAClQYr~rlvVSGS-S---DntIRlwdi~~ 389 (499)
T KOG0281|consen 324 NVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGS-S---DNTIRLWDIEC 389 (499)
T ss_pred eeeccccceEEEecCCceEEEEeccceeeehh---hhcccccceehhccCeEEEecC-C---CceEEEEeccc
Confidence 45557788444455667899999999888654 2333445566778999976553 2 26899996553
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=70.87 E-value=1.3e+02 Score=30.76 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=39.2
Q ss_pred CCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227 313 DGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 313 ~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
++.-.+++. +++.+..||..+.+-..+.-+.. .- ..+.+ -+|+-.+++- ..+++|..|-+++.=+.+.
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg--~I-~av~vs~dGK~~vvaN------dr~el~vididngnv~~id 439 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG--NI-EAVKVSPDGKKVVVAN------DRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCcc--ce-EEEEEcCCCcEEEEEc------CceEEEEEEecCCCeeEec
Confidence 333444554 44689999999998877643322 11 12222 3666555442 4568888887665544443
No 92
>PLN02772 guanylate kinase
Probab=70.11 E-value=24 Score=35.32 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=33.9
Q ss_pred CceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 349 DHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 349 ~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
....++.++++|++++..+....+..||.+|..+..|..-...
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~ 69 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVL 69 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEeccccc
Confidence 3567889999999998654333678999999999999886544
No 93
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.11 E-value=94 Score=30.80 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred eEEECCEEEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC--CCC
Q 012227 309 AVSVDGILYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM--TLL 384 (468)
Q Consensus 309 ~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~ 384 (468)
.++.+|++|+...+ ..|.++|+.+.. |+.-... ........+...+|+||+-.... .++.||+. +..
T Consensus 64 ~~~~dg~v~~~~~~-G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~ 134 (370)
T COG1520 64 PADGDGTVYVGTRD-GNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLV 134 (370)
T ss_pred cEeeCCeEEEecCC-CcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEE
Confidence 47889999997543 479999999876 8753221 01122233344489987643221 78888884 457
Q ss_pred eEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 385 WKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 385 W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
|..-... . ... .-.++..++.||+.. ..+.+++.|.++++-.+.
T Consensus 135 W~~~~~~--~--~~~-----~~~~v~~~~~v~~~s---~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 135 WSRNVGG--S--PYY-----ASPPVVGDGTVYVGT---DDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEEecCC--C--eEE-----ecCcEEcCcEEEEec---CCCeEEEEEccCCcEEEE
Confidence 7765333 0 001 112344577887643 346899999987765443
No 94
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.32 E-value=1.5e+02 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=24.6
Q ss_pred ccceEEECCEEEEEEcCCCeEEEEECCCC--eEEE
Q 012227 306 RSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQ 338 (468)
Q Consensus 306 ~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~ 338 (468)
...++.++|++|+.+.. ..+.++|.+|+ .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~-~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH-NKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCC-CeEEEEECCCCcEEEEE
Confidence 45678899999997643 57999998864 6775
No 95
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=68.02 E-value=1.3e+02 Score=29.83 Aligned_cols=151 Identities=12% Similarity=0.080 Sum_probs=70.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~ 292 (468)
.|-.++.+.....+-+||+.|..-... ......-...+... .+.|.++-|. ++.+.+||++++.=. ...
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t----~KgH~~WVlcvaws-----PDgk~iASG~~dg~I~lwdpktg~~~-g~~ 195 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFT----CKGHKNWVLCVAWS-----PDGKKIASGSKDGSIRLWDPKTGQQI-GRA 195 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCccee----ecCCccEEEEEEEC-----CCcchhhccccCCeEEEecCCCCCcc-ccc
Confidence 344455555566789999998753322 21111112222222 2345555554 456999998876521 011
Q ss_pred CCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccE
Q 012227 293 MPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATC 372 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~ 372 (468)
++.+.+--..+.+...-..-......-++..+.+...|+..++-... +..+......+..+|.=++..+.. ..+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~---lsgHT~~VTCvrwGG~gliySgS~---Drt 269 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT---LSGHTASVTCVRWGGEGLIYSGSQ---DRT 269 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---eccCccceEEEEEcCCceEEecCC---Cce
Confidence 11110000000000000000112122222345677777776654432 222233345556676666555433 378
Q ss_pred EEEEEEec
Q 012227 373 VCIWELQK 380 (468)
Q Consensus 373 i~Vw~ld~ 380 (468)
|+||+-.+
T Consensus 270 Ikvw~a~d 277 (480)
T KOG0271|consen 270 IKVWRALD 277 (480)
T ss_pred EEEEEccc
Confidence 99998765
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=67.25 E-value=1.1e+02 Score=28.56 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=69.7
Q ss_pred cCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 222 IGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 222 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
...+.+-+||-.|+....--..+.+... + ..+.+.+++.+.....+..+|..+=.=-..-.||..+
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtS-----l-----Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV---- 227 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTS-----L-----EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNV---- 227 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcc-----e-----eeccCCCEEEEecCceeEEeccccccceeeccCcccc----
Confidence 3345789999999876531111111111 1 1223345666655556777766542111111223211
Q ss_pred ccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE--CCeEEEEEEEeeCCccEEEEEEE
Q 012227 302 SLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC--GGRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 302 ~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~--~G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
.+.+..=+--+|+-+++...+..||..|+.=... ......++ ..+.. +|.+|..+.. ..++.+|..
T Consensus 228 ----~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSE----DGTirlWQt 296 (334)
T KOG0278|consen 228 ----ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSE----DGTIRLWQT 296 (334)
T ss_pred ----ccccccCCCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCC----CceEEEEEe
Confidence 1222222345566565556778888887652221 01111112 22222 8999987643 258999998
Q ss_pred ecCC--CCeEE
Q 012227 379 QKMT--LLWKE 387 (468)
Q Consensus 379 d~~~--~~W~~ 387 (468)
.+.+ +.|.-
T Consensus 297 ~~~~~~~~~~~ 307 (334)
T KOG0278|consen 297 TPGKTYGLWKC 307 (334)
T ss_pred cCCCchhhccc
Confidence 8752 35543
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.21 E-value=1.2e+02 Score=29.20 Aligned_cols=120 Identities=8% Similarity=0.062 Sum_probs=64.1
Q ss_pred EEEEEEcCCCeEEEEECC--CCeEEEee-cC-CCCC----CCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCe
Q 012227 315 ILYFMRSDPEGIVSYNMV--TGVWKQFI-IP-TPLH----LNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLW 385 (468)
Q Consensus 315 ~lY~~~~~~~~i~~fD~~--~~~w~~i~-~P-~p~~----~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W 385 (468)
.+|+.....+.|.+||+. ++++..+. +. .|.. .....+.. -+|+..++.. .....+.||.++.....+
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~---~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD---RTASLISVFSVSEDGSVL 264 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec---CCCCeEEEEEEeCCCCeE
Confidence 567766556788889886 34554331 11 1111 11111221 2565444432 224688999998766677
Q ss_pred EEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC--CCCcEEEccCCcc
Q 012227 386 KEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV--MSREWLKVPGCVV 445 (468)
Q Consensus 386 ~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~--~t~~w~~v~~~~~ 445 (468)
+.+...+..... ..+..-.++..||+... ..+.+.+|+. +++.++.+.....
T Consensus 265 ~~~~~~~~~~~p------~~~~~~~dg~~l~va~~--~~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 265 SFEGHQPTETQP------RGFNIDHSGKYLIAAGQ--KSHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred EEeEEEeccccC------CceEECCCCCEEEEEEc--cCCcEEEEEEcCCCCcEEEcccccc
Confidence 777666533111 01222235667776432 2456777754 6778888766544
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.70 E-value=1.2e+02 Score=28.19 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=38.4
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCC-CCccC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLR-NSWTR 289 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t-~~W~~ 289 (468)
|-++.....++++.||+--.++|..+-...........+... +..-.+-+.+...++.+.|++..+ +.|..
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wa----pheygl~LacasSDG~vsvl~~~~~g~w~t 141 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWA----PHEYGLLLACASSDGKVSVLTYDSSGGWTT 141 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccc----ccccceEEEEeeCCCcEEEEEEcCCCCccc
Confidence 333344344567899999999998776543222222222221 222223444455567777766654 47764
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.42 E-value=1.6e+02 Score=29.60 Aligned_cols=111 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred eEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEE--cCCCeEEEEECCCC-eEEEeec
Q 012227 266 YKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMR--SDPEGIVSYNMVTG-VWKQFII 341 (468)
Q Consensus 266 ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~--~~~~~i~~fD~~~~-~w~~i~~ 341 (468)
.-|+..|. ++.+.+||..++. .++..|.+.. .-..+.+...=||+. .+...|..+|+... .+..+.+
T Consensus 359 gLifgtgt~d~~vkiwdlks~~--~~a~Fpght~-------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTG-------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred ceEEeccCCCceEEEEEcCCcc--ccccCCCCCC-------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 34554443 3458999988776 4444443211 122344433336654 35556999999764 4444434
Q ss_pred CCCCCCCCceEEE--ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChh
Q 012227 342 PTPLHLNDHTLAE--CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNI 394 (468)
Q Consensus 342 P~p~~~~~~~l~~--~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~ 394 (468)
+... ...-+. ..|....+++ ..+.||.++..+..|.++...++.
T Consensus 430 ~~~~---~v~s~~fD~SGt~L~~~g------~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 430 DEKK---EVNSLSFDQSGTYLGIAG------SDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred cccc---cceeEEEcCCCCeEEeec------ceeEEEEEecccccceeeehhhhc
Confidence 3221 111222 2466655552 567899999889999998777543
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=63.55 E-value=2.8e+02 Score=32.04 Aligned_cols=220 Identities=10% Similarity=0.088 Sum_probs=104.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC-C--------cceeEEEEEEcCCCCCCCeEEEEEEec-CcEEE
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK-V--------WSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEI 279 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~--------~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~v 279 (468)
++..+|-|++.+..+.++.++|+..+.-..+...... . ......|+.+++ ....|++.... ..+.+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~----~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA----KKNLLYVADTENHALRE 650 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC----CCCEEEEEeCCCceEEE
Confidence 6667898999988888999999865544444431000 0 001123444441 12345554433 23677
Q ss_pred EeCCCCCccCCCCC-------CCCcc-cCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCC---C-
Q 012227 280 YDSLRNSWTRPGSM-------PSNIK-LPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPT---P- 344 (468)
Q Consensus 280 y~s~t~~W~~~~~~-------p~~~~-~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~---p- 344 (468)
+|..++.=+.+..- ..... .....+. ...+.+ +|.+|+.....+.|..||..+.....+.-.. .
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~-P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS-PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCC-CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 77655432211100 00000 0000011 112333 6889998777778999999887665431100 0
Q ss_pred -------CCCCC-ceEEEE-CC-eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe----eChhh--hhcccC------c
Q 012227 345 -------LHLND-HTLAEC-GG-RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR----MPNIW--CLDFYG------K 402 (468)
Q Consensus 345 -------~~~~~-~~l~~~-~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~----mp~~~--~~~~~~------~ 402 (468)
..... ..++.. +| .||++... ...|.+|.++ ++.-..+.. .+... +...-+ .
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~--tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLK--TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECC--CCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 00011 123333 44 48876532 2345555443 232221110 00000 000000 0
Q ss_pred ceEE-EEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 403 HVRM-TCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 403 ~~~~-~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
..+. .++..+|.||+.. ...++|.+||++++....+.+
T Consensus 804 ~~P~Gvavd~dG~LYVAD--s~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVAD--SYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred cCCceeeEeCCCcEEEEE--CCCCEEEEEECCCCeEEEEec
Confidence 0112 2233456677753 335789999999998887754
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=63.17 E-value=1.2e+02 Score=31.54 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=60.3
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCC-----CCCCceEEEEC-CeEEEEEEEeeCCccEEEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPL-----HLNDHTLAECG-GRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~-----~~~~~~l~~~~-G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
..+++.+|.+|+...+ ..+.++|..++ .|+.- ...+. ......++..+ |++|+... .. .|+.|
T Consensus 55 ~sPvv~~g~vy~~~~~-g~l~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g------~v~Al 125 (488)
T cd00216 55 GTPLVVDGDMYFTTSH-SALFALDAATGKVLWRYD-PKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DG------RLVAL 125 (488)
T ss_pred cCCEEECCEEEEeCCC-CcEEEEECCCChhhceeC-CCCCccccccccccCCcEEccCCeEEEecC-CC------eEEEE
Confidence 4567789999997644 57999999865 57652 22110 00112234445 77776432 11 45566
Q ss_pred ecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee------CCCCeEEEEECCCCcEEE
Q 012227 379 QKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS------RQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 379 d~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~------~~~~~l~~YD~~t~~w~~ 439 (468)
|.. +..|+.-..-......... ... .+ .++.+|+.... ...+.++++|.++++-.+
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~---ssP-~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMT---GAP-TI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEec---CCC-EE-ECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 654 3466643111100000000 011 12 24677663221 124679999999886444
No 102
>PRK04792 tolB translocation protein TolB; Provisional
Probab=62.85 E-value=1.9e+02 Score=29.70 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=71.6
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCE-EEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGI-LYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~-lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l 352 (468)
.+.++|..++.-+.+...+... ......-+|. |++.... ...|..+|+.+++...+.. .........
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~--------~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~- 312 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGIN--------GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPS- 312 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCc--------CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceE-
Confidence 3677787776554443322110 0111112443 4444322 2358889999888766521 111111111
Q ss_pred EEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 353 AECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 353 ~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
..-+|+-.++.... ....+||.++..+++++++..-. ... .......+++.|++.........++.+|+
T Consensus 313 wSpDG~~I~f~s~~---~g~~~Iy~~dl~~g~~~~Lt~~g-~~~-------~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 313 WHPDGKSLIFTSER---GGKPQIYRVNLASGKVSRLTFEG-EQN-------LGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred ECCCCCEEEEEECC---CCCceEEEEECCCCCEEEEecCC-CCC-------cCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 12255433332211 12358888887777777653111 000 01122235667766433333457889999
Q ss_pred CCCcEEEccC
Q 012227 433 MSREWLKVPG 442 (468)
Q Consensus 433 ~t~~w~~v~~ 442 (468)
++++.+.+..
T Consensus 382 ~~g~~~~lt~ 391 (448)
T PRK04792 382 ETGAMQVLTS 391 (448)
T ss_pred CCCCeEEccC
Confidence 9998877643
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=62.81 E-value=1.4e+02 Score=28.28 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=78.7
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL 303 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~ 303 (468)
.+.+-+||-++..-..+..-..+.+ ...+ .+. +...+..|+-.+-+..+.++|+++.+=+.. .+.. ..
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~~~W-Vscv--rfs--P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--~~gh-----~~ 193 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSHREW-VSCV--RFS--PNESNPIIVSASWDKTVKVWNLRNCQLRTT--FIGH-----SG 193 (315)
T ss_pred cceeeeeeecccEEEEEecCCCcCc-EEEE--EEc--CCCCCcEEEEccCCceEEEEccCCcchhhc--cccc-----cc
Confidence 4568899999888777766322222 1223 333 444456666666677899999987653321 1111 00
Q ss_pred ccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 304 NFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 304 ~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
......|..+|.+...++....++-.|+...+--.- ++. ...-..++..-.++.+.... ...|+||.++..
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l~a--~~~v~sl~fspnrywL~~at----~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-LEA--FDIVNSLCFSPNRYWLCAAT----ATSIKIWDLESK 264 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-ccC--CCeEeeEEecCCceeEeecc----CCceEEEeccch
Confidence 112234445888888777666777788876553221 211 11113445555665555443 257999988864
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=62.53 E-value=1.3e+02 Score=27.87 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=48.0
Q ss_pred EEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCC
Q 012227 218 CFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSN 296 (468)
Q Consensus 218 ~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~ 296 (468)
++.......+.+||+.|++....-..... . .++.+++ . .-.+++.+. ++.+.+||..++..... ++..
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~--~~l~~~~--d--g~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~ 72 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQR---P--RGITLSK--D--GKLLYVCASDSDTIQVIDLATGEVIGT--LPSG 72 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCC---C--CceEECC--C--CCEEEEEECCCCeEEEEECCCCcEEEe--ccCC
Confidence 33334445788888888765432211111 1 1223331 1 123444433 45689999887765321 1111
Q ss_pred cccCcccccccceEEECC-EEEEEEcCCCeEEEEECCCCe
Q 012227 297 IKLPVSLNFRSQAVSVDG-ILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 297 ~~~~~~~~~~~~~v~~~G-~lY~~~~~~~~i~~fD~~~~~ 335 (468)
.. + ....+.-+| .+|..+.....+..+|+.+.+
T Consensus 73 ~~-~-----~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 73 PD-P-----ELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CC-c-----cEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 00 0 011111244 455554445678999998764
No 105
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.22 E-value=1.3e+02 Score=28.76 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=57.4
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCC--ccEEEEEEEecCCCCeEEEEeeChhhhhccc
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNA--ATCVCIWELQKMTLLWKEVDRMPNIWCLDFY 400 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~--~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~ 400 (468)
..|-.||..+.+|...--. ....-..+.- .+.+|++.+...-.+ ...+..| +..+.+|+.+..-.. ....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~y--d~~~~~w~~~~~~~s---~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATY--DFKNQTWSSLGGGSS---NSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEE--ecCCCeeeecCCccc---ccCC
Confidence 4688899999999864211 1111123332 378888887665433 4455555 555689987654210 0111
Q ss_pred CcceEEEEEe-cCCEEEEEeee-CCCCeEEEEECCCCcEEEccC
Q 012227 401 GKHVRMTCLG-NKGLLMLSLRS-RQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 401 ~~~~~~~~~~-~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~v~~ 442 (468)
+....+.... +++.+++.... .....+..| +..+|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 1111122222 34456553322 122345566 5678888866
No 106
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.63 E-value=1.6e+02 Score=28.49 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCcccCCCCC-CCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEE
Q 012227 190 LKKWHHPTIS-SLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKI 268 (468)
Q Consensus 190 ~~~w~~~~l~-~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykV 268 (468)
.+.|..++++ .+|...+.+ .+...+.+.+... ...++.-.=-=+.|..+...... ..... ....+.++
T Consensus 90 G~tW~~v~l~~~lpgs~~~i-~~l~~~~~~l~~~-~G~iy~T~DgG~tW~~~~~~~~g----s~~~~-----~r~~dG~~ 158 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGI-TALGDGSAELAGD-RGAIYRTTDGGKTWQAVVSETSG----SINDI-----TRSSDGRY 158 (302)
T ss_dssp TSS-EE----TT-SS-EEEE-EEEETTEEEEEET-T--EEEESSTTSSEEEEE-S--------EEEE-----EE-TTS-E
T ss_pred CCCcEEeecCCCCCCCeeEE-EEcCCCcEEEEcC-CCcEEEeCCCCCCeeEcccCCcc----eeEeE-----EECCCCcE
Confidence 3467766654 345443333 3333443333332 23455555555678876553221 11111 11234567
Q ss_pred EEEEecCc-EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEE--CCCCeEEEeecCCCC
Q 012227 269 LWVGCDGE-YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYN--MVTGVWKQFIIPTPL 345 (468)
Q Consensus 269 v~v~~~~~-v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD--~~~~~w~~i~~P~p~ 345 (468)
++++..+. +...+++...|......... +...-+..-+|.++.++.. ..|..=| -..++|..-..|...
T Consensus 159 vavs~~G~~~~s~~~G~~~w~~~~r~~~~-------riq~~gf~~~~~lw~~~~G-g~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTWQPHNRNSSR-------RIQSMGFSPDGNLWMLARG-GQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS-EEEE--SSS--------EEEEEE-TTS-EEEEETT-TEEEEEE-TTEEEEE---B-TTSS
T ss_pred EEEECcccEEEEecCCCccceEEccCccc-------eehhceecCCCCEEEEeCC-cEEEEccCCCCccccccccCCccc
Confidence 77776666 45567888889866432111 1112222236788777743 3333333 356788874444433
Q ss_pred CCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 346 HLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 346 ~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
......-+.+ ++.++++++.. .+++=.+....|++...
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGGSG-------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp --S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GG
T ss_pred CceeeEEEEecCCCCEEEEeCCc-------cEEEeCCCCccceECcc
Confidence 2222221222 57888776422 45555666789999743
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=61.22 E-value=1.2e+02 Score=28.05 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=46.6
Q ss_pred EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCe-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 315 ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 315 ~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
.+|+.+.....+..+|+.+++.... +..... ...+.. -+|+ |++++. ....+.+|.++. .+... .++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~~--~~~l~~~~dg~~l~~~~~----~~~~v~~~d~~~--~~~~~--~~~ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQR--PRGITLSKDGKLLYVCAS----DSDTIQVIDLAT--GEVIG--TLP 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEE-EECCCC--CCceEECCCCCEEEEEEC----CCCeEEEEECCC--CcEEE--ecc
Confidence 4555555556788888877654332 221111 112322 2555 444432 124566775443 33322 222
Q ss_pred hhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 393 NIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
... .. ..+.+...++.+|+.. ...+.+.+||+++.+
T Consensus 71 ~~~-----~~-~~~~~~~~g~~l~~~~--~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 71 SGP-----DP-ELFALHPNGKILYIAN--EDDNLVTVIDIETRK 106 (300)
T ss_pred CCC-----Cc-cEEEECCCCCEEEEEc--CCCCeEEEEECCCCe
Confidence 110 00 0122222445565432 234578888888764
No 108
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=61.20 E-value=4.1 Score=39.35 Aligned_cols=39 Identities=26% Similarity=0.620 Sum_probs=33.5
Q ss_pred hhhccChHHHHHHHHhcCCh--------hhHHHHhhcccchhhhccC
Q 012227 117 EIWKEFPEDLYEAVIARLPI--------ATFFRFRSVCQKWNSLLKS 155 (468)
Q Consensus 117 ~~w~~LP~DLl~~IL~RLp~--------~~l~r~r~VCK~Wr~li~s 155 (468)
..|+.||.++|.+|+.|+.. ++.+.+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 67999999999999999964 3678999999999987544
No 109
>PF13013 F-box-like_2: F-box-like domain
Probab=60.58 E-value=7.5 Score=31.24 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.0
Q ss_pred hccChHHHHHHHHhcCChhhHHHHhhccc
Q 012227 119 WKEFPEDLYEAVIARLPIATFFRFRSVCQ 147 (468)
Q Consensus 119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK 147 (468)
..+||+||+..|+..-..+++......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 36799999999999999988877777777
No 110
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.36 E-value=2e+02 Score=29.12 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=35.4
Q ss_pred ECCEEEEEEcCCCeEEEEECCCC-----eEEEeecCCCCCCCC-ceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTG-----VWKQFIIPTPLHLND-HTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLL 384 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~-----~w~~i~~P~p~~~~~-~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~ 384 (468)
-+|.++..+... .++.-+-... +|..+..+ ..... ..+.. -++.+++++... -+++..+....
T Consensus 290 ~dg~l~l~g~~G-~l~~S~d~G~~~~~~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G-------~v~~s~D~G~t 359 (398)
T PLN00033 290 ADGGLWLLTRGG-GLYVSKGTGLTEEDFDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSG-------ILLRSTDGGKS 359 (398)
T ss_pred CCCCEEEEeCCc-eEEEecCCCCcccccceeecccC--CCCcceEEEEEcCCCcEEEEECCC-------cEEEeCCCCcc
Confidence 467777776543 3433333333 45554332 11111 12222 367888776432 35555666789
Q ss_pred eEEEE
Q 012227 385 WKEVD 389 (468)
Q Consensus 385 W~~v~ 389 (468)
|+++.
T Consensus 360 W~~~~ 364 (398)
T PLN00033 360 WKRDK 364 (398)
T ss_pred eeEcc
Confidence 99975
No 111
>PRK10115 protease 2; Provisional
Probab=59.79 E-value=2.7e+02 Score=30.48 Aligned_cols=120 Identities=8% Similarity=0.076 Sum_probs=62.4
Q ss_pred EECCEEEEEEcC---CCeEEEEECC-CCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeE
Q 012227 311 SVDGILYFMRSD---PEGIVSYNMV-TGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWK 386 (468)
Q Consensus 311 ~~~G~lY~~~~~---~~~i~~fD~~-~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~ 386 (468)
..++.+|+.... ...|+..++. ++.|..+ +|......-..+...++.|++..... ..-.++.++..+....
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~~~~~~~l~~~~~~~----g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEEL-IPPRENIMLEGFTLFTDWLVVEERQR----GLTSLRQINRKTREVI 351 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEE-ECCCCCCEEEEEEEECCEEEEEEEeC----CEEEEEEEcCCCCceE
Confidence 346788887642 2468888887 6789887 44422211123344577776655432 2335666664333333
Q ss_pred EEEeeChhhhhcccCcceEEEEE--ecCCEEEEEeee-CCCCeEEEEECCCCcEEEccC
Q 012227 387 EVDRMPNIWCLDFYGKHVRMTCL--GNKGLLMLSLRS-RQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 387 ~v~~mp~~~~~~~~~~~~~~~~~--~~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~v~~ 442 (468)
.+. ++..... ..+... ..++.+++...+ .....++.||+++++++.+..
T Consensus 352 ~l~-~~~~~~~------~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 352 GIA-FDDPAYV------TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred Eec-CCCCceE------eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 221 0100000 000011 123556654433 256789999999998887754
No 112
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=58.72 E-value=2.3e+02 Score=29.41 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=55.7
Q ss_pred EEEEEEecCcEEEEeCCCC--CccCCCCCCCCcccCcccccccceEEEC-CEEEEEEcCCCeEEEEECCCC--eEEEeec
Q 012227 267 KILWVGCDGEYEIYDSLRN--SWTRPGSMPSNIKLPVSLNFRSQAVSVD-GILYFMRSDPEGIVSYNMVTG--VWKQFII 341 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~--~W~~~~~~p~~~~~~~~~~~~~~~v~~~-G~lY~~~~~~~~i~~fD~~~~--~w~~i~~ 341 (468)
+|++...++.+..+|..++ .|+.-...+.....+. ......++.+ +++|+-.. ...+.++|..++ .|+.- .
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~--~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG~~~W~~~-~ 138 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCD--VVNRGVAYWDPRKVFFGTF-DGRLVALDAETGKQVWKFG-N 138 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccc--cccCCcEEccCCeEEEecC-CCeEEEEECCCCCEeeeec-C
Confidence 5565544556777787654 4875322110000000 0111223446 88887653 468999999865 57653 2
Q ss_pred CCCC--CC-CCceEEEECCeEEEEEEEeeC--CccEEEEEEEecC--CCCeEEE
Q 012227 342 PTPL--HL-NDHTLAECGGRIMLVGLLTKN--AATCVCIWELQKM--TLLWKEV 388 (468)
Q Consensus 342 P~p~--~~-~~~~l~~~~G~L~lv~~~~~~--~~~~i~Vw~ld~~--~~~W~~v 388 (468)
.... .. .....+..+|.+++....... ....-.++.||.. +..|+.-
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 2211 00 112234456666543211100 0011256777765 3578654
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.26 E-value=2.1e+02 Score=28.76 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=87.3
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCC---CCCccCCCCCCCCcccCcc
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSL---RNSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~---t~~W~~~~~~p~~~~~~~~ 302 (468)
.+.+||-.|+..+.+=+..... ....++-..| .+++++-+.+..+..+|.. .+.|+-+.. |.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~-S~~sc~W~pD------g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~-~~------- 356 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGF-SVSSCAWCPD------GFRFVTGSPDRTIIMWDLDGNILGNWEGVRD-PK------- 356 (519)
T ss_pred heeeccCCcchhhhhcccCcCC-CcceeEEccC------CceeEecCCCCcEEEecCCcchhhccccccc-ce-------
Confidence 3667888888766543322111 1111222222 2444432334456666665 467876532 11
Q ss_pred cccccceEEECCE-EEEEEcCCCeEEEEECCCCeEE-EeecCCCCCCCCceE-EEECCeEEEEEEEeeCCccEEEEEEEe
Q 012227 303 LNFRSQAVSVDGI-LYFMRSDPEGIVSYNMVTGVWK-QFIIPTPLHLNDHTL-AECGGRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 303 ~~~~~~~v~~~G~-lY~~~~~~~~i~~fD~~~~~w~-~i~~P~p~~~~~~~l-~~~~G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
...-++..+|+ ++.++. ...|.-|+.++..=. .+...-| ...+ ..-+|++.+|.... ..+.+|.++
T Consensus 357 --v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~~dr~lise~~~----its~~iS~d~k~~LvnL~~----qei~LWDl~ 425 (519)
T KOG0293|consen 357 --VHDLAITYDGKYVLLVTV-DKKIRLYNREARVDRGLISEEQP----ITSFSISKDGKLALVNLQD----QEIHLWDLE 425 (519)
T ss_pred --eEEEEEcCCCcEEEEEec-ccceeeechhhhhhhccccccCc----eeEEEEcCCCcEEEEEccc----CeeEEeecc
Confidence 11223444665 344443 345666776654332 2211111 1122 23488999888754 578999776
Q ss_pred cCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 380 KMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 380 ~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
+ |+.+ ...+.---+....-.|+|.++.-|+..++ ...+++.+|..+++.-.+
T Consensus 426 e----~~lv----~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 426 E----NKLV----RKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLLAV 477 (519)
T ss_pred h----hhHH----HHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCceeEe
Confidence 3 3322 11111111112234577755544444333 467888888888765443
No 114
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=57.43 E-value=30 Score=27.67 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=28.9
Q ss_pred eEEEEcCCCC-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe
Q 012227 226 NFYVCNPLTQ-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC 273 (468)
Q Consensus 226 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~ 273 (468)
.++++||.|+ .|....+ ....+.+.+| +..+.|+|+.+.+
T Consensus 12 ~V~~yd~~tKk~WvPs~~------~~~~V~~y~~--~~~ntfRIi~~~~ 52 (111)
T cd01206 12 HVFQIDPKTKKNWIPASK------HAVTVSYFYD--STRNVYRIISVGG 52 (111)
T ss_pred EEEEECCCCcceeEeCCC------CceeEEEEec--CCCcEEEEEEecC
Confidence 5899999986 8985543 1234666677 7788899997654
No 115
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.00 E-value=3.6e+02 Score=31.19 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=103.2
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC------------CcceeEEEEEEcCCCCCCCeEEEEEE-ecCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK------------VWSRVAVGMTLNGNSTSSGYKILWVG-CDGE 276 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~------------~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~ 276 (468)
+...++.|++.+...+.+.++|+.++.-..+...... .......++.+++ .+-.+++.. +...
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp----~~g~LyVad~~~~~ 706 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP----VNEKVYIAMAGQHQ 706 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec----CCCeEEEEECCCCe
Confidence 5556778888887777899999988877665431000 0000112334441 122444433 2344
Q ss_pred EEEEeCCCCCccCCCC------CCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeec--C---
Q 012227 277 YEIYDSLRNSWTRPGS------MPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFII--P--- 342 (468)
Q Consensus 277 v~vy~s~t~~W~~~~~------~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~--P--- 342 (468)
+.+|+..++....... ............ ...++.+ +| .+|+.....+.|..||+.++....+.- |
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~-~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFA-QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCcccccccc-CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 7777776554332110 000000000001 1223433 34 599888777899999998765432210 0
Q ss_pred CCC-------------CCCC-ceEE-EECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhc---ccC-cc
Q 012227 343 TPL-------------HLND-HTLA-ECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLD---FYG-KH 403 (468)
Q Consensus 343 ~p~-------------~~~~-~~l~-~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~---~~~-~~ 403 (468)
... .... ..++ .-+|.||++.... ..|.+| +..++....+...+..-+.+ ..+ ..
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----~rIrvi--D~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----HKIKKL--DPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----CEEEEE--ECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 000 0011 1222 3478888776432 455655 54444444443322110100 000 00
Q ss_pred eEE-EEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 404 VRM-TCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 404 ~~~-~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
.+. .++..+|.||+.. ...+.|.++|+++++.
T Consensus 860 ~P~GIavd~dG~lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 860 EPAGLALGENGRLFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CceEEEEeCCCCEEEEE--CCCCEEEEEECCCCcc
Confidence 111 2344466777743 3356899999998865
No 116
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=56.38 E-value=1.9e+02 Score=27.69 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=61.7
Q ss_pred ceEEEEcCCC-CceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcc
Q 012227 225 RNFYVCNPLT-QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 225 ~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~ 302 (468)
.++.|||-.| ++...+|.+.. | .+...+.| + ...|+-|+ ++.+.||+..+..=+....+ ...++..
T Consensus 77 GklIvWDs~TtnK~haipl~s~--W---VMtCA~sP--S---g~~VAcGGLdN~Csiy~ls~~d~~g~~~v--~r~l~gH 144 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSS--W---VMTCAYSP--S---GNFVACGGLDNKCSIYPLSTRDAEGNVRV--SRELAGH 144 (343)
T ss_pred CeEEEEEcccccceeEEecCce--e---EEEEEECC--C---CCeEEecCcCceeEEEeccccccccccee--eeeecCc
Confidence 3567777766 45555665321 1 12333432 1 23343344 56689999875422211111 1112211
Q ss_pred cccccceEEECCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCC---CceEEEECCeEEEEEEEeeCCccEEEEEEE
Q 012227 303 LNFRSQAVSVDGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLN---DHTLAECGGRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 303 ~~~~~~~v~~~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~---~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
..|.+..-++++. +.++++ .....-.|+++++-... . ..+.. ...+...+++.|+-+... ....+|.+
T Consensus 145 tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~-f--~GH~gDV~slsl~p~~~ntFvSg~cD----~~aklWD~ 216 (343)
T KOG0286|consen 145 TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQV-F--HGHTGDVMSLSLSPSDGNTFVSGGCD----KSAKLWDV 216 (343)
T ss_pred cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEE-e--cCCcccEEEEecCCCCCCeEEecccc----cceeeeec
Confidence 1223334445533 344432 22344468777665432 1 11111 122333477888776543 35577754
Q ss_pred ec
Q 012227 379 QK 380 (468)
Q Consensus 379 d~ 380 (468)
..
T Consensus 217 R~ 218 (343)
T KOG0286|consen 217 RS 218 (343)
T ss_pred cC
Confidence 43
No 117
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.29 E-value=1.9e+02 Score=27.77 Aligned_cols=104 Identities=12% Similarity=0.238 Sum_probs=55.2
Q ss_pred eEEEEECCCCeEEEe---ecCCCCCC----CCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhh
Q 012227 325 GIVSYNMVTGVWKQF---IIPTPLHL----NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 397 (468)
Q Consensus 325 ~i~~fD~~~~~w~~i---~~P~p~~~----~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~ 397 (468)
.|-.||.++++-+.+ .+-.+... +..----.+++|++.-. +....+-||.++..++.=+++..-|..--.
T Consensus 79 HVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~---DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~ 155 (339)
T PF09910_consen 79 HVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARA---DGHANLGVYSLDRRTGKAEKLSSNPSLKGT 155 (339)
T ss_pred eEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEec---CCcceeeeEEEcccCCceeeccCCCCcCce
Confidence 578899998876554 11111111 11111234788887653 345788999999766655554333321000
Q ss_pred cccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE--EEcc
Q 012227 398 DFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW--LKVP 441 (468)
Q Consensus 398 ~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w--~~v~ 441 (468)
. .....|++.++ . ......+.+||+.+++| +..+
T Consensus 156 -~---~~D~a~F~i~~-~-----~~g~~~i~~~Dli~~~~~~e~f~ 191 (339)
T PF09910_consen 156 -L---VHDYACFGINN-F-----HKGVSGIHCLDLISGKWVIESFD 191 (339)
T ss_pred -E---eeeeEEEeccc-c-----ccCCceEEEEEccCCeEEEEecc
Confidence 0 00123333211 0 11245799999999999 4443
No 118
>PRK04043 tolB translocation protein TolB; Provisional
Probab=56.00 E-value=1.9e+02 Score=29.32 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=58.4
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceEEEECC-eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCc
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGG-RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK 402 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~ 402 (468)
..|..+|+.+++-..+. ..+....... ..-+| +|.+.. ... ..-+||.++..++.++.+..-+....
T Consensus 213 ~~Iyv~dl~tg~~~~lt-~~~g~~~~~~-~SPDG~~la~~~-~~~---g~~~Iy~~dl~~g~~~~LT~~~~~d~------ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIA-SSQGMLVVSD-VSKDGSKLLLTM-APK---GQPDIYLYDTNTKTLTQITNYPGIDV------ 280 (419)
T ss_pred CEEEEEECCCCcEEEEe-cCCCcEEeeE-ECCCCCEEEEEE-ccC---CCcEEEEEECCCCcEEEcccCCCccC------
Confidence 46889999988776652 1111111111 12256 444433 222 23488988876677777654432100
Q ss_pred ceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 403 HVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 403 ~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
......+|..|+|.........|+.+|+++++.+++.
T Consensus 281 --~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 281 --NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred --ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 1112235667777544334458999999999987774
No 119
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=55.33 E-value=2.1e+02 Score=27.98 Aligned_cols=218 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred EEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC--ccCCCCCCCCcccCcccc-
Q 012227 228 YVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS--WTRPGSMPSNIKLPVSLN- 304 (468)
Q Consensus 228 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~- 304 (468)
+-+||..++...+-.....-...+.+.+ ...+.|.+.+-...+.+.||-..++. |..+...-..-..|. -+
T Consensus 69 y~iD~~~G~Lt~ln~~~~~g~~p~yvsv-----d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ 142 (346)
T COG2706 69 YRIDPDDGRLTFLNRQTLPGSPPCYVSV-----DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH-ERQ 142 (346)
T ss_pred EEEcCCCCeEEEeeccccCCCCCeEEEE-----CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC-ccc
Q ss_pred ----cccceEEECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEE
Q 012227 305 ----FRSQAVSVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 305 ----~~~~~v~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
.....+.-+|.+-+... ..+.|..||++.+.......-.-....+++=.+. +|++.++...=. .++.||.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~---stV~v~~ 219 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN---STVDVLE 219 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC---CEEEEEE
Q ss_pred EecCCCCeEEEEeeChhhhhcccCcce--EEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccCCCCccceee
Q 012227 378 LQKMTLLWKEVDRMPNIWCLDFYGKHV--RMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIA 455 (468)
Q Consensus 378 ld~~~~~W~~v~~mp~~~~~~~~~~~~--~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~~~~~~~~~~ 455 (468)
++...++.+++..+ ..+-.+|.+... .+....+|..+|++.+..+.-.++.-|..+++.+-+...+...--+|.+..
T Consensus 220 y~~~~g~~~~lQ~i-~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i 298 (346)
T COG2706 220 YNPAVGKFEELQTI-DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI 298 (346)
T ss_pred EcCCCceEEEeeee-ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee
No 120
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=54.14 E-value=2.6e+02 Score=28.66 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=14.6
Q ss_pred CCCCeEEEEECCCCcEEEcc
Q 012227 422 RQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 422 ~~~~~l~~YD~~t~~w~~v~ 441 (468)
.+...+.+||.++++.+++.
T Consensus 379 ~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 379 NDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred cCCceEEEEecCCceEEEee
Confidence 34557888888888877764
No 121
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=53.86 E-value=2.5e+02 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=25.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEec
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKEL 240 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~L 240 (468)
..|++|-.++.++....+.||++-|.+-+..
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhc
Confidence 6788998888887777899999999887654
No 122
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.36 E-value=91 Score=29.78 Aligned_cols=102 Identities=15% Similarity=0.296 Sum_probs=54.9
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEc------CCCeEEEEECCCCeEEEeecCC----C
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRS------DPEGIVSYNMVTGVWKQFIIPT----P 344 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~------~~~~i~~fD~~~~~w~~i~~P~----p 344 (468)
.+++||..+.+|.....--.. . -....+. +..+|+.+. ....+..||..+.+|..+..-. |
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G-------~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISG-------T-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred EEEEEECCCCEeecCCCCceE-------E-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCC
Confidence 489999999999877541100 0 0111122 445555442 3457899999999998763311 1
Q ss_pred CCCCCceEEEEC-CeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 345 LHLNDHTLAECG-GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 345 ~~~~~~~l~~~~-G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
.......+...+ .++++.+.. ......+..| | ..+|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--d--Gs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS-ANGSTFLMKY--D--GSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEecee-cCCCceEEEE--c--CCceEeccc
Confidence 111111112223 356665544 3333445555 4 478988755
No 123
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.44 E-value=26 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.7
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCC
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~ 333 (468)
..+++.+|.+|+.+.+ ..+.++|.+|
T Consensus 15 ~~~~v~~g~vyv~~~d-g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD-GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT-SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC-CEEEEEeCCC
Confidence 4456689999998754 6899999865
No 124
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=50.99 E-value=1.2e+02 Score=31.18 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=37.0
Q ss_pred CCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCC
Q 012227 262 TSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 262 ~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~ 333 (468)
.+++--++.||.+.++.+||.++.+=.. .+... .| ...|.+ +|.+-+++...+.|+.||+..
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~--~l~y~--~P------lstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTD--RLTYS--HP------LSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CCccceEEEecccceEEEeecccccccc--eeeec--CC------cceeeecCCceEEEeecCCceEEEEeccc
Confidence 3455667778888899999998654321 11111 11 112222 566666666667788888854
No 125
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=50.92 E-value=1.9e+02 Score=27.86 Aligned_cols=77 Identities=9% Similarity=0.186 Sum_probs=43.5
Q ss_pred ceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEE
Q 012227 350 HTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVT 429 (468)
Q Consensus 350 ~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~ 429 (468)
..+..++|+|.+.. ...+.||.++..+ ++..+..+...... ......++.|++. .....-.++.
T Consensus 92 ~ai~~~~~~lv~~~------g~~l~v~~l~~~~-~l~~~~~~~~~~~i--------~sl~~~~~~I~vg-D~~~sv~~~~ 155 (321)
T PF03178_consen 92 TAICSFNGRLVVAV------GNKLYVYDLDNSK-TLLKKAFYDSPFYI--------TSLSVFKNYILVG-DAMKSVSLLR 155 (321)
T ss_dssp EEEEEETTEEEEEE------TTEEEEEEEETTS-SEEEEEEE-BSSSE--------EEEEEETTEEEEE-ESSSSEEEEE
T ss_pred eEhhhhCCEEEEee------cCEEEEEEccCcc-cchhhheecceEEE--------EEEeccccEEEEE-EcccCEEEEE
Confidence 45677889855433 2578899888754 58887776443211 1122236677653 2222335567
Q ss_pred EECCCCcEEEccC
Q 012227 430 YNVMSREWLKVPG 442 (468)
Q Consensus 430 YD~~t~~w~~v~~ 442 (468)
||.+.++...+..
T Consensus 156 ~~~~~~~l~~va~ 168 (321)
T PF03178_consen 156 YDEENNKLILVAR 168 (321)
T ss_dssp EETTTE-EEEEEE
T ss_pred EEccCCEEEEEEe
Confidence 7776666776654
No 126
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=49.94 E-value=2.8e+02 Score=27.73 Aligned_cols=152 Identities=9% Similarity=0.095 Sum_probs=73.6
Q ss_pred EEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc
Q 012227 271 VGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH 350 (468)
Q Consensus 271 v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~ 350 (468)
.+++..+.+++.+++.=-..-..|. ...+.....||.+.+-+..+..|-++|+.+++-..- .+...+....
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd--------~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e-~~~heG~k~~ 220 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPD--------MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE-GVAHEGAKPA 220 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCC--------eEEEEEeccCCceeeeecccceeEEEcCCCCcEeee-cccccCCCcc
Confidence 3445567888888765211000111 112223345788777766667899999999886553 2222222222
Q ss_pred e-EEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEE
Q 012227 351 T-LAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVT 429 (468)
Q Consensus 351 ~-l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~ 429 (468)
. +-.-+|.|+ ..+...-....+.+|.-+.-..- .-...|. ...|...++.- .+.+.||++..+ ...|-.
T Consensus 221 Raifl~~g~i~-tTGfsr~seRq~aLwdp~nl~eP-~~~~elD-----tSnGvl~PFyD-~dt~ivYl~GKG--D~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGKIF-TTGFSRMSERQIALWDPNNLEEP-IALQELD-----TSNGVLLPFYD-PDTSIVYLCGKG--DSSIRY 290 (472)
T ss_pred eeEEeccCcee-eeccccccccceeccCcccccCc-ceeEEec-----cCCceEEeeec-CCCCEEEEEecC--CcceEE
Confidence 3 333466644 44444444567788844322111 0011111 01111111111 135677776433 456777
Q ss_pred EECCCCc--EEEcc
Q 012227 430 YNVMSRE--WLKVP 441 (468)
Q Consensus 430 YD~~t~~--w~~v~ 441 (468)
|....+. ...+.
T Consensus 291 yEit~d~P~~hyln 304 (472)
T KOG0303|consen 291 FEITNEPPFVHYLN 304 (472)
T ss_pred EEecCCCceeEEec
Confidence 7776665 44443
No 127
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.76 E-value=3.1e+02 Score=27.99 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=34.3
Q ss_pred ECCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
.++.+.+-++.++.|-.||..+. .|.. .+-....... -+..-.|.+.+.++ ...++||.+-.
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~-elnhg~pVe~-vl~lpsgs~iasAg-----Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVV-ELNHGCPVES-VLALPSGSLIASAG-----GNSVKVWDLTT 226 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeE-EecCCCceee-EEEcCCCCEEEEcC-----CCeEEEEEecC
Confidence 46667777777778889998877 4332 2322221111 12222445544332 36789997764
No 128
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.53 E-value=3.7e+02 Score=28.73 Aligned_cols=157 Identities=11% Similarity=0.086 Sum_probs=70.8
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+++|--++.......+.+||+..+-..-+.- ++...-+.-.+.+ ...+.+.|+..|-+..+.+||..++.=+.+.
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st--ir~H~DYVkcla~---~ak~~~lvaSgGLD~~IflWDin~~~~~l~~ 156 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMST--IRTHKDYVKCLAY---IAKNNELVASGGLDRKIFLWDINTGTATLVA 156 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhh--hhcccchheeeee---cccCceeEEecCCCccEEEEEccCcchhhhh
Confidence 3444344444444579999998664111111 1111112122222 1233455555555667888887765322221
Q ss_pred CCCC--CcccCcccccccceEEEC--CEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCce-EEE-ECCeEEEEEEE
Q 012227 292 SMPS--NIKLPVSLNFRSQAVSVD--GILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHT-LAE-CGGRIMLVGLL 365 (468)
Q Consensus 292 ~~p~--~~~~~~~~~~~~~~v~~~--G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~-l~~-~~G~L~lv~~~ 365 (468)
.... ...++.+..-.-.+...| |.+.+-++-+..|..||+.+..=. +.+- .+..+.. |.. -+|.-++-+.
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-mkLr--GHTdNVr~ll~~dDGt~~ls~s- 232 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-MKLR--GHTDNVRVLLVNDDGTRLLSAS- 232 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-eeee--ccccceEEEEEcCCCCeEeecC-
Confidence 1110 000100000011122233 445555555567888999887633 2232 3333333 333 3555444332
Q ss_pred eeCCccEEEEEEEec
Q 012227 366 TKNAATCVCIWELQK 380 (468)
Q Consensus 366 ~~~~~~~i~Vw~ld~ 380 (468)
. ..+|++|.|..
T Consensus 233 S---DgtIrlWdLgq 244 (735)
T KOG0308|consen 233 S---DGTIRLWDLGQ 244 (735)
T ss_pred C---CceEEeeeccc
Confidence 2 25788887754
No 129
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=47.17 E-value=3e+02 Score=27.39 Aligned_cols=146 Identities=11% Similarity=-0.003 Sum_probs=69.7
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECC-EEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDG-ILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l 352 (468)
.+.+|+..++.-..+....... ......-+| .|++.... ...|..+|+.++....+.. ..........
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~~--------~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~ 285 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGMN--------GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSW 285 (417)
T ss_pred EEEEEECCCCCEEEeecCCCCc--------cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEE
Confidence 4788888777554433221110 011122245 45554332 2358888998887665421 1111111111
Q ss_pred EEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 353 AECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 353 ~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
.-+|+..++.... .....||.++..+..+..+..-.... .......++..|++.........++.||+
T Consensus 286 -s~dg~~l~~~s~~---~g~~~iy~~d~~~~~~~~l~~~~~~~--------~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 286 -SPDGKSIAFTSDR---GGSPQIYMMDADGGEVRRLTFRGGYN--------ASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred -CCCCCEEEEEECC---CCCceEEEEECCCCCEEEeecCCCCc--------cCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 1255433332211 12237888776666665543211110 01222224556655433222347999999
Q ss_pred CCCcEEEccC
Q 012227 433 MSREWLKVPG 442 (468)
Q Consensus 433 ~t~~w~~v~~ 442 (468)
.++.++.+..
T Consensus 354 ~~~~~~~l~~ 363 (417)
T TIGR02800 354 DGGGERVLTD 363 (417)
T ss_pred CCCCeEEccC
Confidence 9988887753
No 130
>PRK00178 tolB translocation protein TolB; Provisional
Probab=47.13 E-value=3.2e+02 Score=27.59 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=71.4
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECC-EEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDG-ILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l 352 (468)
.+.+++..++.-+.+...+... ......-+| .+++... +...|..+|+.++....+. ..........
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~~--------~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~- 293 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGLN--------GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT-NHPAIDTEPF- 293 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCc--------CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc-cCCCCcCCeE-
Confidence 3777888877655543322110 011111244 4544432 2236888999988876642 1111111111
Q ss_pred EEECCe-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEE
Q 012227 353 AECGGR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYN 431 (468)
Q Consensus 353 ~~~~G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD 431 (468)
..-+|+ |++... . .....||.++..++++.++..... .. .......+++.|++.........++.+|
T Consensus 294 ~spDg~~i~f~s~--~--~g~~~iy~~d~~~g~~~~lt~~~~-----~~---~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 294 WGKDGRTLYFTSD--R--GGKPQIYKVNVNGGRAERVTFVGN-----YN---ARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ECCCCCEEEEEEC--C--CCCceEEEEECCCCCEEEeecCCC-----Cc---cceEECCCCCEEEEEEccCCceEEEEEE
Confidence 122454 544421 1 123467877766666666532110 00 0111223566666543322234689999
Q ss_pred CCCCcEEEccC
Q 012227 432 VMSREWLKVPG 442 (468)
Q Consensus 432 ~~t~~w~~v~~ 442 (468)
+.+++.+.+..
T Consensus 362 l~tg~~~~lt~ 372 (430)
T PRK00178 362 LQRGSVRILTD 372 (430)
T ss_pred CCCCCEEEccC
Confidence 99998887754
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.80 E-value=2.5e+02 Score=26.25 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEc-CCCe--EEEEECCCCeEEEe
Q 012227 263 SSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS-DPEG--IVSYNMVTGVWKQF 339 (468)
Q Consensus 263 ~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~-~~~~--i~~fD~~~~~w~~i 339 (468)
...+|++.-|++..+.|+....++|..-..+..+...-....+ . +..-..+.|.... .+.. |..-|-+.++|..-
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw-a-P~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t 250 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW-A-PSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT 250 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh-c-cccCCCceeeEEecCCCcEEEEEecCccCccccc
Confidence 3457777777788899998888899754332221110000000 0 0000122222221 1122 23335556788754
Q ss_pred ecC-CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 340 IIP-TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 340 ~~P-~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
.+- .|...... --..-|.++.|.+- ...+.+|+=+ ..++|+++...
T Consensus 251 ll~~f~~~~w~v-SWS~sGn~LaVs~G----dNkvtlwke~-~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 251 LLEEFPDVVWRV-SWSLSGNILAVSGG----DNKVTLWKEN-VDGKWEEVGEV 297 (299)
T ss_pred ccccCCcceEEE-EEeccccEEEEecC----CcEEEEEEeC-CCCcEEEcccc
Confidence 221 11111110 11235777666542 2577888644 35799987543
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=46.74 E-value=3.3e+02 Score=27.69 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCeEEEEEEecCcEEEEeCCCCC
Q 012227 264 SGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 264 ~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
..-+|+.++.|..+.+||...+.
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred ccceEEEecCCceEEEEEeccce
Confidence 45678888878889999987774
No 133
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=45.96 E-value=2.8e+02 Score=26.66 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=56.9
Q ss_pred CC-EEEEEEcCCCeEEEEECCCC-eEEE-----eecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227 313 DG-ILYFMRSDPEGIVSYNMVTG-VWKQ-----FIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLL 384 (468)
Q Consensus 313 ~G-~lY~~~~~~~~i~~fD~~~~-~w~~-----i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~ 384 (468)
+| .+|+.....+.|..||+.+. .... +..+.. ..-..++. -+|+..++.. .....+.+|.++..+++
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g--~~p~~~~~~pdg~~lyv~~---~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG--AGPRHMVFHPNQQYAYCVN---ELNSSVDVWQLKDPHGE 210 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC--CCCceEEECCCCCEEEEEe---cCCCEEEEEEEeCCCCC
Confidence 44 56666656678999999763 3321 112221 11122332 2555443332 12368899999865556
Q ss_pred eEEEEee---ChhhhhcccCcceEEEE-E-ecCCEEEEEeeeCCCCeEEEEECCC--CcEEEcc
Q 012227 385 WKEVDRM---PNIWCLDFYGKHVRMTC-L-GNKGLLMLSLRSRQMNRLVTYNVMS--REWLKVP 441 (468)
Q Consensus 385 W~~v~~m---p~~~~~~~~~~~~~~~~-~-~~~~~I~~~~~~~~~~~l~~YD~~t--~~w~~v~ 441 (468)
.+.+..+ |.... +......+ + .++..+|+.. ...+.+.+||.++ ..++.+.
T Consensus 211 ~~~~~~~~~~p~~~~----~~~~~~~i~~~pdg~~lyv~~--~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 211 IECVQTLDMMPADFS----DTRWAADIHITPDGRHLYACD--RTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEEEEecCCCcCC----CCccceeEEECCCCCEEEEec--CCCCeEEEEEEeCCCCeEEEeE
Confidence 6555443 22111 11111111 1 2455676642 2345677777744 3444443
No 134
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=44.54 E-value=44 Score=25.75 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=23.5
Q ss_pred cCCEEEEEeeeC---------------CCCeEEEEECCCCcEEEc-cCCccCCC
Q 012227 411 NKGLLMLSLRSR---------------QMNRLVTYNVMSREWLKV-PGCVVPRG 448 (468)
Q Consensus 411 ~~~~I~~~~~~~---------------~~~~l~~YD~~t~~w~~v-~~~~~~~~ 448 (468)
++|.|||...+. ..++++.||+.+++.+.+ .++.+|.|
T Consensus 8 ~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNG 61 (89)
T PF03088_consen 8 DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNG 61 (89)
T ss_dssp TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEE
T ss_pred CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCe
Confidence 348888854322 246899999999999776 44555543
No 135
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=43.82 E-value=3.3e+02 Score=26.81 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-------CC---CCceEEEE---CCeEEEEEEEee---CCccEEEEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-------HL---NDHTLAEC---GGRIMLVGLLTK---NAATCVCIW 376 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-------~~---~~~~l~~~---~G~L~lv~~~~~---~~~~~i~Vw 376 (468)
+|.+||+..+ +.|...|+..+.-... .|... .. .+..+..+ .|+||++-.... .....-+||
T Consensus 195 ~~~~~F~Sy~-G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 195 GGRLYFVSYE-GNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTEEEEEBTT-SEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCeEEEEecC-CEEEEEeccCCccccc-CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 3577777644 4677777776543222 11110 00 12334443 678987643222 123456999
Q ss_pred EEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCE-EEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 377 ELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGL-LMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 377 ~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~-I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
++|..+. +++.+++.+.-. ..+. +..++. +++.. ....+.+++||..+++...
T Consensus 273 v~D~~t~--krv~Ri~l~~~~------~Si~-Vsqd~~P~L~~~-~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 273 VYDLKTH--KRVARIPLEHPI------DSIA-VSQDDKPLLYAL-SAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEETTTT--EEEEEEEEEEEE------SEEE-EESSSS-EEEEE-ETTTTEEEEEETTT--EEE
T ss_pred EEECCCC--eEEEEEeCCCcc------ceEE-EccCCCcEEEEE-cCCCCeEEEEeCcCCcEEe
Confidence 9998644 455555432100 0133 333332 33222 2234689999999986443
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.53 E-value=3.7e+02 Score=27.35 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceE
Q 012227 201 LPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFK 238 (468)
Q Consensus 201 ~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~ 238 (468)
+|+....+ .++-.|.+++.+....++|+|--.||.-.
T Consensus 80 ~Pg~v~al-~s~n~G~~l~ag~i~g~lYlWelssG~LL 116 (476)
T KOG0646|consen 80 LPGPVHAL-ASSNLGYFLLAGTISGNLYLWELSSGILL 116 (476)
T ss_pred cccceeee-ecCCCceEEEeecccCcEEEEEeccccHH
Confidence 34443344 66778888888877789999999988754
No 137
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=43.38 E-value=63 Score=31.35 Aligned_cols=87 Identities=20% Similarity=0.399 Sum_probs=47.0
Q ss_pred cceEEE-CCEEEEEEc----C-C--CeEEEEECC-CCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEE
Q 012227 307 SQAVSV-DGILYFMRS----D-P--EGIVSYNMV-TGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 307 ~~~v~~-~G~lY~~~~----~-~--~~i~~fD~~-~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw 376 (468)
..+|.+ ||.|-+--. . . -.++.|-.. ...|..-.--.+.....+.+++. +|+|.|+..+.. ..-+||
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~---g~rrVY 200 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDD---GRRRVY 200 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TT---S---EE
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEeccc---ceEEEE
Confidence 344555 777766432 1 2 356778776 67887532212344557899999 899999987653 234788
Q ss_pred EEecCCCCeEE-EEeeChhhh
Q 012227 377 ELQKMTLLWKE-VDRMPNIWC 396 (468)
Q Consensus 377 ~ld~~~~~W~~-v~~mp~~~~ 396 (468)
+=.+...+|++ +..++.-|.
T Consensus 201 eS~DmG~tWtea~gtlsrVw~ 221 (310)
T PF13859_consen 201 ESGDMGTTWTEALGTLSRVWG 221 (310)
T ss_dssp EESSTTSS-EE-TTTTTT---
T ss_pred EEcccceehhhccCccceeec
Confidence 77777889999 456665443
No 138
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=42.13 E-value=25 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=22.7
Q ss_pred hhhccChHHHHHHHHhcCChhhHHH
Q 012227 117 EIWKEFPEDLYEAVIARLPIATFFR 141 (468)
Q Consensus 117 ~~w~~LP~DLl~~IL~RLp~~~l~r 141 (468)
..|..||.|+-..||..|+-.+|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999998864
No 139
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.09 E-value=3.9e+02 Score=27.12 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=65.0
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
-+||++..+.....+-|||-..+.-. ..|. +......+.|. .+.|-+++...++.+.+||.+... ...
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpg---ht~~vk~i~Fs------ENGY~Lat~add~~V~lwDLRKl~--n~k 425 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG---HTGPVKAISFS------ENGYWLATAADDGSVKLWDLRKLK--NFK 425 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCCC---CCCceeEEEec------cCceEEEEEecCCeEEEEEehhhc--ccc
Confidence 47888888777778899998877632 2333 22233344443 345777766666679999998654 121
Q ss_pred CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFI 340 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~ 340 (468)
..+.. -.+....+.+ -|..-.++++.-.|.-|+-.+..|+.+.
T Consensus 426 t~~l~------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 426 TIQLD------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred eeecc------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 11111 0111223333 3555555554445777788899999873
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.56 E-value=4.2e+02 Score=27.16 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=74.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCC-ce-EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQ-SF-KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~-~~-~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W 287 (468)
.-+.+|.+++....+..+.+|+...+ .. +.+..... ....+.| + + ..-.|+..+.++.+.++|.++++=
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~---~v~~~~f--~--p--~g~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST---YVTSVAF--S--P--DGNLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC---ceEEEEe--c--C--CCCEEEEecCCCcEEEEeccCCeE
Confidence 33456766666666678999998333 22 33433211 1222333 3 1 123444444566799999988432
Q ss_pred cCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEE--EeecCCCCCC-CCceEEEECCeEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWK--QFIIPTPLHL-NDHTLAECGGRIMLV 362 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~--~i~~P~p~~~-~~~~l~~~~G~L~lv 362 (468)
... +..+. -...++.+ +|.+.+.+.....|..||+.++... .. +...... ....+....+..|++
T Consensus 281 ~~~--l~~hs-------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 281 VRK--LKGHS-------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL-LSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEe--eeccC-------CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec-ccCCCCCCceeEEEECCCCcEEE
Confidence 111 11110 01112223 5666666655678999999999864 11 1111111 111222223334444
Q ss_pred EEEeeCCccEEEEEEEecC
Q 012227 363 GLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~ 381 (468)
.... ...+.+|.+...
T Consensus 351 ~~~~---d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 351 SASL---DRTLKLWDLRSG 366 (456)
T ss_pred EecC---CCeEEEEEccCC
Confidence 4332 257899988753
No 141
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=5.7e+02 Score=28.65 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=52.8
Q ss_pred ceEEECC--EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCC
Q 012227 308 QAVSVDG--ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTL 383 (468)
Q Consensus 308 ~~v~~~G--~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~ 383 (468)
.++.+++ -+-.-.++...|-++|+...+--.. .........+... .+.|+.++.. ..+.|++|+-+.
T Consensus 254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t---frrendRFW~laahP~lNLfAAgHD-----sGm~VFkleREr- 324 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT---FRRENDRFWILAAHPELNLFAAGHD-----SGMIVFKLERER- 324 (1202)
T ss_pred ceEEecCccceeEecCCCccEEEEecccccceee---eeccCCeEEEEEecCCcceeeeecC-----CceEEEEEcccC-
Confidence 3454554 3333344567899999987653322 0011122344444 4777766532 457888777421
Q ss_pred CeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 384 LWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 384 ~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
+..|+. +|.+|.. . ...+..||+.+.+=..+
T Consensus 325 ---------------------pa~~v~-~n~LfYv-k---d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 325 ---------------------PAYAVN-GNGLFYV-K---DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred ---------------------ceEEEc-CCEEEEE-c---cceEEeeecccccccee
Confidence 234554 4555432 2 35789999988544333
No 142
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.78 E-value=4.4e+02 Score=26.78 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=100.0
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
...++++|..|++-+.|...+.. .....+..| +...++.... ...+.+++..++.++.+...+.. .
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~---~~~~~~SPD-----G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~-d--- 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM---LVVSDVSKD-----GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI-D--- 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc---EEeeEECCC-----CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc-c---
Confidence 45799999999998887642111 111122111 1222232222 23488889888888877543321 0
Q ss_pred ccccccceEEECC-EEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC---ccEEEE
Q 012227 302 SLNFRSQAVSVDG-ILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA---ATCVCI 375 (468)
Q Consensus 302 ~~~~~~~~v~~~G-~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~---~~~i~V 375 (468)
......-+| .||+.... ...|..+|+.+++...+.. ... ... ...-+|+..+......+. ....+|
T Consensus 280 ----~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 280 ----VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNS-SVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ----CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCc-eECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 011122244 67777642 2368899999888866522 111 112 222255544333322111 123688
Q ss_pred EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 376 WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 376 w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
|.++..++.+..+..-+ .. ......-+|..|++.........+..+|++.+.=..++.
T Consensus 352 ~v~d~~~g~~~~LT~~~---~~------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 352 YLISTNSDYIRRLTANG---VN------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEEECCCCCeEECCCCC---Cc------CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 88887777776654321 00 012222356667665443344568999998887766653
No 143
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=38.72 E-value=1.3e+02 Score=29.15 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=39.9
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEe
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLT 366 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~ 366 (468)
..+-..+|++|+.....+.+..+|++++++..+ .-.|... ..|+-. |.+.+|+...
T Consensus 206 hSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~--rGL~f~-G~llvVgmSk 261 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFT--RGLAFA-GDFAFVGLSK 261 (335)
T ss_pred cCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCC--ccccee-CCEEEEEecc
Confidence 445568999999998888999999999998877 3333222 233333 8888887653
No 144
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=37.85 E-value=3.6e+02 Score=25.57 Aligned_cols=159 Identities=9% Similarity=0.074 Sum_probs=81.3
Q ss_pred ceEEEEEcCCceEEEEcCC-CCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPL-TQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~-T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~~ 291 (468)
|.++...+..+.+.+|+-. .+.|.-..-. .........++.. ...+.++.+ .+..+.+|.-..+.|..++
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 3366666666778888877 4555433221 1111111112221 112333333 3455777877778887665
Q ss_pred CCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEEC-CCCeEEEeecCCCCCCCCceEEEECC--eEEEEEEEe
Q 012227 292 SMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNM-VTGVWKQFIIPTPLHLNDHTLAECGG--RIMLVGLLT 366 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~-~~~~w~~i~~P~p~~~~~~~l~~~~G--~L~lv~~~~ 366 (468)
.+..+ ...-.+|. .+|.+-..++....+-.... +.+++..+.. ...+......+...+ .|.+-+.+.
T Consensus 100 ~lEGH-------EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV-L~~HtqDVK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 100 TLEGH-------ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV-LQEHTQDVKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred eeecc-------ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee-eccccccccEEEEcCCcceeEEeccC
Confidence 44321 00122332 35665555655555544433 3456665422 333444456666655 555444433
Q ss_pred eCCccEEEEEEEecCCCCeEEEEeeCh
Q 012227 367 KNAATCVCIWELQKMTLLWKEVDRMPN 393 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~ 393 (468)
.+|++|.-++ .+.|+.+..+..
T Consensus 172 ----nTIk~~~~~~-dddW~c~~tl~g 193 (312)
T KOG0645|consen 172 ----NTIKVYRDED-DDDWECVQTLDG 193 (312)
T ss_pred ----CeEEEEeecC-CCCeeEEEEecC
Confidence 5788887665 578888877753
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.68 E-value=3.8e+02 Score=25.82 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=21.1
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPAR 243 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~ 243 (468)
+.+|-..+.+..+..+-+||..+++-..+...
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 34554444444456788999999988776653
No 146
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.65 E-value=5.8e+02 Score=27.91 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=85.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC-Ccc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN-SWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~-~W~ 288 (468)
-.|.+|-+...+...+++-|||-.++-+..--. .+.....++.+..+ .+.++...-++.|..+|..-. ..+
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~~~------g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFTAR------GNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEEec------CCEEEEeecCCeEEeeeecccceee
Confidence 455677777777667789999998776653222 11222223333322 244555555677888887532 233
Q ss_pred CCCCCCCCcccCcccccccceEEEC--CEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSVD--GILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLL 365 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~~--G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~ 365 (468)
.... |... ....+.++ |-+-+.+. +...|.+.++.|++.-.+ +....+--........|.+.+-+.+
T Consensus 429 Tft~-P~p~--------QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 429 TFTS-PEPI--------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eecC-CCce--------eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEeccc
Confidence 3221 2111 23455666 88777765 334688889999887665 3211111011112346665544433
Q ss_pred eeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 366 TKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 366 ~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
. .++++|..= .+|..+..+.
T Consensus 499 D----kTVRiW~if---~s~~~vEtl~ 518 (893)
T KOG0291|consen 499 D----KTVRIWDIF---SSSGTVETLE 518 (893)
T ss_pred c----ceEEEEEee---ccCceeeeEe
Confidence 2 689999654 4555555553
No 147
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=37.26 E-value=4.3e+02 Score=26.29 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=89.6
Q ss_pred eEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227 216 LVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 216 Ll~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p 294 (468)
|+++......++.|.|..|++-. .++... . ...+..+. .+.-.+++.+.++.+.++|..+++ .+..+.
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~----~-~h~~~~~s----~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGG----A-PHAGLKFS----PDGRYLYVANRDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-ST----T-EEEEEE-T----T-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCC----C-ceeEEEec----CCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence 44555555668999999987744 555421 1 11222222 212346666667779999998876 232222
Q ss_pred CCcccCcccccccceEEECCEE-EEEEcCCCeEEEEECCCCeE-EEeecCC-CCCCCC---ceEEEE-CCeEEEEEEEee
Q 012227 295 SNIKLPVSLNFRSQAVSVDGIL-YFMRSDPEGIVSYNMVTGVW-KQFIIPT-PLHLND---HTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~G~l-Y~~~~~~~~i~~fD~~~~~w-~~i~~P~-p~~~~~---~~l~~~-~G~L~lv~~~~~ 367 (468)
... ....-++.-+|+. |+-+..+..+..+|.++.+- ..++... +..... ..++.. .+..+++...+
T Consensus 76 ~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd- 148 (369)
T PF02239_consen 76 VGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD- 148 (369)
T ss_dssp -SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-
T ss_pred cCC------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-
Confidence 111 1112233347764 44444567899999987654 3332211 110011 233333 44446655432
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.=+||.+|.....=..+..+....+. .-..+..++.-|+. .....+.+.+.|.++++...+
T Consensus 149 ----~~~I~vVdy~d~~~~~~~~i~~g~~~-------~D~~~dpdgry~~v-a~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 149 ----TGEIWVVDYSDPKNLKVTTIKVGRFP-------HDGGFDPDGRYFLV-AANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp ----TTEEEEEETTTSSCEEEEEEE--TTE-------EEEEE-TTSSEEEE-EEGGGTEEEEEETTTTEEEEE
T ss_pred ----CCeEEEEEeccccccceeeecccccc-------cccccCcccceeee-cccccceeEEEeeccceEEEE
Confidence 12789888543221122233222111 01223333333322 223346788888888866543
No 148
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.52 E-value=90 Score=18.20 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=17.9
Q ss_pred CCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 412 KGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 412 ~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
++.+|+.. ..+.++++|.++++..+
T Consensus 6 ~~~v~~~~---~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGS---TDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEc---CCCEEEEEEcccCcEEE
Confidence 56777642 34789999999887554
No 149
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.38 E-value=4.3e+02 Score=26.04 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=77.6
Q ss_pred eEEEEEEecCcEEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECC--CCeEEEeec
Q 012227 266 YKILWVGCDGEYEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMV--TGVWKQFII 341 (468)
Q Consensus 266 ykVv~v~~~~~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~--~~~w~~i~~ 341 (468)
-+|++...++.+..+|+.++. |+....- .. .......+.-+|++|+-.... .+.+||.. +..|..- .
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~------~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~-~ 139 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AV------AQLSGPILGSDGKIYVGSWDG-KLYALDASTGTLVWSRN-V 139 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcC-cc------eeccCceEEeCCeEEEecccc-eEEEEECCCCcEEEEEe-c
Confidence 466665455567788888766 8654221 00 011233444589988866543 79999995 4467653 3
Q ss_pred CCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeC--hhhhhcccCcceEEEEEecCCEEEE
Q 012227 342 PTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMP--NIWCLDFYGKHVRMTCLGNKGLLML 417 (468)
Q Consensus 342 P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp--~~~~~~~~~~~~~~~~~~~~~~I~~ 417 (468)
+.. .......+..+|.+++... .. .++.++.. +..|+.-...+ ..... ... ..++.+|+
T Consensus 140 ~~~-~~~~~~~v~~~~~v~~~s~-~g------~~~al~~~tG~~~W~~~~~~~~~~~~~~-------~~~--~~~~~vy~ 202 (370)
T COG1520 140 GGS-PYYASPPVVGDGTVYVGTD-DG------HLYALNADTGTLKWTYETPAPLSLSIYG-------SPA--IASGTVYV 202 (370)
T ss_pred CCC-eEEecCcEEcCcEEEEecC-CC------eEEEEEccCCcEEEEEecCCcccccccc-------Cce--eecceEEE
Confidence 331 1111223444666665431 11 45555554 34666543321 11111 111 44778877
Q ss_pred EeeeCCCCeEEEEECCCCcEEEc
Q 012227 418 SLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 418 ~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
..... ...++.+|+++++..+-
T Consensus 203 ~~~~~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 203 GSDGY-DGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCCC-cceEEEEEccCCcEeee
Confidence 43321 34799999988854443
No 150
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.99 E-value=4.8e+02 Score=26.44 Aligned_cols=146 Identities=10% Similarity=-0.022 Sum_probs=70.9
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECC-EEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDG-ILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l 352 (468)
.+.+++..++.-+.+...+... ......-+| .+++... +...|..+|+.+++...+. ...........
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g~~--------~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~ 299 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRGIN--------GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT-NHFGIDTEPTW 299 (433)
T ss_pred EEEEEECCCCCEEEeccCCCCc--------cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc-cCCCCccceEE
Confidence 3777888777655544322110 011122245 4554432 2236888999888765541 11111111111
Q ss_pred EEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 353 AECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 353 ~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
.-+|+-.++.... .....||.++..+++.+++..-+ .. . .......++..|++.........+..+|+
T Consensus 300 -spDG~~l~f~sd~---~g~~~iy~~dl~~g~~~~lt~~g-~~----~---~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 300 -APDGKSIYFTSDR---GGRPQIYRVAASGGSAERLTFQG-NY----N---ARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred -CCCCCEEEEEECC---CCCceEEEEECCCCCeEEeecCC-CC----c---cCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 1255533333211 12347888876666666553211 00 0 01222235666665433222347999999
Q ss_pred CCCcEEEccC
Q 012227 433 MSREWLKVPG 442 (468)
Q Consensus 433 ~t~~w~~v~~ 442 (468)
.+++.+.+..
T Consensus 368 ~~g~~~~Lt~ 377 (433)
T PRK04922 368 STGSVRTLTP 377 (433)
T ss_pred CCCCeEECCC
Confidence 9998887753
No 151
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.69 E-value=3.7e+02 Score=25.05 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=58.9
Q ss_pred CEEEEEEcCCCeEEEEE--CCCCeEEE----eec----CCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCC
Q 012227 314 GILYFMRSDPEGIVSYN--MVTGVWKQ----FII----PTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTL 383 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD--~~~~~w~~----i~~----P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~ 383 (468)
-++|++.+-...|.+|| ..++..+. +.+ |.....-......-+|.||+...... .|.++|+.++
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~------~V~~~dp~tG 243 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG------TVQKVDPTTG 243 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc------EEEEECCCCC
Confidence 46788876556676666 44443321 111 11000001112244899999876443 7888898877
Q ss_pred CeEEEEeeChhhhhcccCcceEEEEEecC--CEEEEEeeeC-CCCeEEEEECCCCcEEEccCCc
Q 012227 384 LWKEVDRMPNIWCLDFYGKHVRMTCLGNK--GLLMLSLRSR-QMNRLVTYNVMSREWLKVPGCV 444 (468)
Q Consensus 384 ~W~~v~~mp~~~~~~~~~~~~~~~~~~~~--~~I~~~~~~~-~~~~l~~YD~~t~~w~~v~~~~ 444 (468)
+=-+.-.+|.... .-.|++.. +.+|+..... ++..-.-=|++.+..-+++++-
T Consensus 244 K~L~eiklPt~qi--------tsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~aG~iykitgl~ 299 (310)
T KOG4499|consen 244 KILLEIKLPTPQI--------TSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNAGTIYKITGLN 299 (310)
T ss_pred cEEEEEEcCCCce--------EEEEecCCCccEEEEEehhcccCchhcccCCCCccEEEecCcc
Confidence 6555555663321 23455534 4455432221 1111123355566666776643
No 152
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=35.68 E-value=51 Score=22.50 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=13.5
Q ss_pred cCCEEEEEee--eCCCCeEEEEEC
Q 012227 411 NKGLLMLSLR--SRQMNRLVTYNV 432 (468)
Q Consensus 411 ~~~~I~~~~~--~~~~~~l~~YD~ 432 (468)
.+|.||+... ......+.+||+
T Consensus 31 ~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 31 KGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred cCCEEEEecCCCCCCCCCEEEEeC
Confidence 4788888543 123456778875
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.89 E-value=4.4e+02 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.9
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQS 236 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~ 236 (468)
+=|.+|..++.......+.+||-+.+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCC
Confidence 556788888887777778888888776
No 154
>PRK13684 Ycf48-like protein; Provisional
Probab=34.40 E-value=4.5e+02 Score=25.67 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=35.8
Q ss_pred ECCEEEEEEcCCCeEEEE--ECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227 312 VDGILYFMRSDPEGIVSY--NMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~f--D~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~ 387 (468)
-+|.++.++.. ..+.+ +-.-++|..+..|....... ..++.. ++.+++++... .|+.-.+....|+.
T Consensus 224 ~~g~~~~vg~~--G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-------~v~~S~d~G~tW~~ 294 (334)
T PRK13684 224 PDGNLWMLARG--GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-------TLLVSKDGGKTWEK 294 (334)
T ss_pred CCCCEEEEecC--CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-------eEEEeCCCCCCCeE
Confidence 36777777643 34445 23346899765543221111 222222 67888776421 23333444579998
Q ss_pred EE
Q 012227 388 VD 389 (468)
Q Consensus 388 v~ 389 (468)
+.
T Consensus 295 ~~ 296 (334)
T PRK13684 295 DP 296 (334)
T ss_pred CC
Confidence 64
No 155
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=34.36 E-value=3.9e+02 Score=25.96 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=47.3
Q ss_pred eEEE-CCEEEEEEc--CC-----CeEEEEECCCCeEEEeecCCC-CCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEE
Q 012227 309 AVSV-DGILYFMRS--DP-----EGIVSYNMVTGVWKQFIIPTP-LHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 309 ~v~~-~G~lY~~~~--~~-----~~i~~fD~~~~~w~~i~~P~p-~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
++.+ +|.+.+... .. ..++..|-...+|+....+.+ .......+++. +|+|+++..... .....++.-
T Consensus 151 gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~--~~~~~~~~S 228 (351)
T cd00260 151 GIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNS--GGRRPVYES 228 (351)
T ss_pred eEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCC--CCcEEEEEE
Confidence 4555 488766542 11 123334445678986433332 33345788888 999998766542 234455555
Q ss_pred ecCCCCeEEEEee
Q 012227 379 QKMTLLWKEVDRM 391 (468)
Q Consensus 379 d~~~~~W~~v~~m 391 (468)
++...+|.+....
T Consensus 229 ~D~G~tWs~~~~~ 241 (351)
T cd00260 229 RDMGTTWTEALGT 241 (351)
T ss_pred cCCCcCcccCcCC
Confidence 5566899987554
No 156
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=34.27 E-value=4.9e+02 Score=26.02 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=64.0
Q ss_pred EEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEE-EEecCcEEEEeCCCCCccCCCCCCCC
Q 012227 218 CFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILW-VGCDGEYEIYDSLRNSWTRPGSMPSN 296 (468)
Q Consensus 218 ~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~-v~~~~~v~vy~s~t~~W~~~~~~p~~ 296 (468)
++...+...+++|||.-.+ +.+..+..+......+.|.-| .+.++ ...+..+..++-.+++.-. ....+
T Consensus 339 lVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd-------~r~IASaSFDkSVkLW~g~tGk~la--sfRGH 408 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPD-------GRYIASASFDKSVKLWDGRTGKFLA--SFRGH 408 (480)
T ss_pred eEEecCCceEEEecccccc-cchhhhhchhhheeeEEECCC-------ccEEEEeecccceeeeeCCCcchhh--hhhhc
Confidence 3344444579999997433 222222222111112222212 33333 3345568888877776521 11111
Q ss_pred cccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEE
Q 012227 297 IKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVC 374 (468)
Q Consensus 297 ~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~ 374 (468)
+. ..+.-+-..+..+-+-++....+-+||+.+.+...- +| .+....+.+.+ +|...+-++. ...+.
T Consensus 409 v~-----~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D-Lp--Gh~DEVf~vDwspDG~rV~sggk----dkv~~ 476 (480)
T KOG0271|consen 409 VA-----AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD-LP--GHADEVFAVDWSPDGQRVASGGK----DKVLR 476 (480)
T ss_pred cc-----eeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc-CC--CCCceEEEEEecCCCceeecCCC----ceEEE
Confidence 00 001111123455666665556788899988876642 44 23233333332 5555443332 23556
Q ss_pred EEE
Q 012227 375 IWE 377 (468)
Q Consensus 375 Vw~ 377 (468)
+|.
T Consensus 477 lw~ 479 (480)
T KOG0271|consen 477 LWR 479 (480)
T ss_pred eec
Confidence 663
No 157
>PRK04792 tolB translocation protein TolB; Provisional
Probab=34.09 E-value=5.3e+02 Score=26.37 Aligned_cols=187 Identities=16% Similarity=0.063 Sum_probs=90.7
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cC--cEEEEeCCCCCccCCCCCCCCcccC
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DG--EYEIYDSLRNSWTRPGSMPSNIKLP 300 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~--~v~vy~s~t~~W~~~~~~p~~~~~~ 300 (468)
...++++|..+++...+...+... ....+ . + .+. +|+.... ++ .+.++|..++..+.+..-....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~---~~~~w--S--P-DG~-~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~--- 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN---GAPRF--S--P-DGK-KLALVLSKDGQPEIYVVDIATKALTRITRHRAID--- 308 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc---CCeeE--C--C-CCC-EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCc---
Confidence 347999999998877765432111 11122 2 1 122 3333322 23 3677788888776554311100
Q ss_pred cccccccceEEECC-EEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEE
Q 012227 301 VSLNFRSQAVSVDG-ILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 301 ~~~~~~~~~v~~~G-~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
......-+| .+++... ....|..+|+.++++..+.... ...... ...-+|+..++.... ....+||.
T Consensus 309 -----~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~-~~SpDG~~l~~~~~~---~g~~~I~~ 378 (448)
T PRK04792 309 -----TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGG-SITPDGRSMIMVNRT---NGKFNIAR 378 (448)
T ss_pred -----cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCe-eECCCCCEEEEEEec---CCceEEEE
Confidence 011111244 3444442 2246888899888887653211 111111 122256544333222 23468888
Q ss_pred EecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 378 LQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 378 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
++..++....+..-. .. . ......++..|++.........++++|.+.+.-+.++
T Consensus 379 ~dl~~g~~~~lt~~~---~d-~-----~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 379 QDLETGAMQVLTSTR---LD-E-----SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred EECCCCCeEEccCCC---CC-C-----CceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 887666655442211 00 0 1122235666665433333345888898766555554
No 158
>PTZ00334 trans-sialidase; Provisional
Probab=33.83 E-value=1.4e+02 Score=32.81 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=53.3
Q ss_pred ceEEE-CCEEEEEEc----CC--CeEEEEECCCCeEEEeecCCCCCCCCceEEEEC-CeEEEEEEEeeCCccEEEEEEEe
Q 012227 308 QAVSV-DGILYFMRS----DP--EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECG-GRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 308 ~~v~~-~G~lY~~~~----~~--~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~-G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
.+|.+ ||.|-+--. +. -.++.|-.+++.|..-.--.+.....+.+++++ |+|.|+..+.+ ..-.||+-.
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~d---G~RrVYES~ 340 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDD---GRRRVYESG 340 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCC---CCEEEEEEC
Confidence 44444 777765421 11 246778777777964221123445678999996 99999987653 123788777
Q ss_pred cCCCCeEEE-EeeChhh
Q 012227 380 KMTLLWKEV-DRMPNIW 395 (468)
Q Consensus 380 ~~~~~W~~v-~~mp~~~ 395 (468)
+....|++. ..++.-|
T Consensus 341 DmG~tWtEAlGTLsrVW 357 (780)
T PTZ00334 341 DKGDSWTEALGTLSRVW 357 (780)
T ss_pred CCCCChhhCCCccceee
Confidence 777899884 4555444
No 159
>PF13919 ASXH: Asx homology domain
Probab=31.44 E-value=28 Score=29.28 Aligned_cols=47 Identities=26% Similarity=0.510 Sum_probs=33.9
Q ss_pred hhchhhhccChHHHHHHHHhcCChhhHH--------------------HHhhcccchhhhccCcchh
Q 012227 113 AMEQEIWKEFPEDLYEAVIARLPIATFF--------------------RFRSVCQKWNSLLKSHSFS 159 (468)
Q Consensus 113 ~~~~~~w~~LP~DLl~~IL~RLp~~~l~--------------------r~r~VCK~Wr~li~s~~F~ 159 (468)
-.++..|..||.+--.+||+-||..+.. -|+..|..|+..+.+-.|.
T Consensus 38 L~N~~tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~ 104 (138)
T PF13919_consen 38 LLNPETWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFD 104 (138)
T ss_pred HhCHHHHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCC
Confidence 3568889999999999999999986542 2555566666665554443
No 160
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=30.75 E-value=6.6e+02 Score=26.44 Aligned_cols=116 Identities=18% Similarity=0.327 Sum_probs=62.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCc--eEecCCCCcCCcceeE-----EEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQS--FKELPARSVKVWSRVA-----VGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~~~~~-----~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
+|.|++.... ..++-+|..|++ |+.-+..+........ -+..+. +-+|++...++.+..+|..+++
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~------~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY------DGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEE------CCEEEEEcCCCEEEEEECCCCC
Confidence 6777776543 357778888876 4432221111000000 011111 1366665556668888887665
Q ss_pred --ccCCCC-CCCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCC--eEEEeecC
Q 012227 287 --WTRPGS-MPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTG--VWKQFIIP 342 (468)
Q Consensus 287 --W~~~~~-~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~--~w~~i~~P 342 (468)
|+.-.. ... .......+++.+|++|+-... ...|.+||.+++ .|+.-..|
T Consensus 142 ~~W~~~~~~~~~------~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 142 VVWSKKNGDYKA------GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEeecccccccc------cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 764321 110 011235577789999886431 357999999886 56654343
No 161
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=30.66 E-value=1.4e+02 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=17.2
Q ss_pred CEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 413 GLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 413 ~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
|.||+. ...+.++.+|.++++..+-
T Consensus 1 ~~v~~~---~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVG---TPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEE---TTTSEEEEEETTTTSEEEE
T ss_pred CEEEEe---CCCCEEEEEECCCCCEEEe
Confidence 456653 3457899999999975543
No 162
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=30.63 E-value=2.1e+02 Score=26.84 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=36.2
Q ss_pred EECCEEEEEEcC------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEE
Q 012227 311 SVDGILYFMRSD------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLL 365 (468)
Q Consensus 311 ~~~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~ 365 (468)
+.+|+||..+.+ +..+..-+...+.|+.+..|...+......+..++.|++.+..
T Consensus 198 yY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 198 YYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred hhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 579999998752 1245666777889999988877777777888999999999864
No 163
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.40 E-value=5.9e+02 Score=25.78 Aligned_cols=187 Identities=8% Similarity=0.026 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe---cCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC---DGEYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~---~~~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
.+++++|.-++.-+.+..... . ....... + +.-+|+.+.. ...+.++|..++..+.+...+...
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~---~--v~~p~wS--p--DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~---- 248 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSS---L--VLTPRFS--P--NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT---- 248 (435)
T ss_pred eEEEEECCCCCCcEEEecCCC---C--eEeeEEC--C--CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc----
Confidence 478999987666555543211 1 1111122 1 1124443332 234888898888766554322110
Q ss_pred ccccccceEEECC-EEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEE
Q 012227 302 SLNFRSQAVSVDG-ILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 302 ~~~~~~~~v~~~G-~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
......-+| .+++... ....|..+|+.+.....+ ...+....... ..-+|+-.++.... . ...+||.+
T Consensus 249 ----~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~-~spDG~~i~f~s~~-~--g~~~Iy~~ 319 (435)
T PRK05137 249 ----FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL-TDSPAIDTSPS-YSPDGSQIVFESDR-S--GSPQLYVM 319 (435)
T ss_pred ----cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc-cCCCCccCcee-EcCCCCEEEEEECC-C--CCCeEEEE
Confidence 111222345 3443332 224588889988876654 11111111111 11245433322211 1 12367777
Q ss_pred ecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 379 QKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 379 d~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
+......+.+..-+... .......+++.|++.........+..+|++++..+.+.
T Consensus 320 d~~g~~~~~lt~~~~~~--------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 320 NADGSNPRRISFGGGRY--------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred ECCCCCeEEeecCCCcc--------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 76555555443211100 01122235666655432222357889999877766653
No 164
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=30.39 E-value=4.6e+02 Score=24.53 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=70.7
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE---ecCCCCcCC------cceeEEEEEEcCCC-------CCCCeEEEEEEecC-
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK---ELPARSVKV------WSRVAVGMTLNGNS-------TSSGYKILWVGCDG- 275 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~---~LP~~~~~~------~~~~~~~~~~d~~~-------~~~~ykVv~v~~~~- 275 (468)
-||-++........++-+|-.|+... .||...... .....+-|.+|.+. ..+..++++.--+.
T Consensus 77 YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~ 156 (250)
T PF02191_consen 77 YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPE 156 (250)
T ss_pred ECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcc
Confidence 46767776666678999999998755 576642220 11122334444210 01111122111110
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC----CCeEEEEECCCCeEEEeecCCCCCCCCce
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD----PEGIVSYNMVTGVWKQFIIPTPLHLNDHT 351 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~ 351 (468)
..+| ..+|... .+. .....+..+-|+||++... .....+||+.+++-..+.+|.+.......
T Consensus 157 tL~v----~~tw~T~--~~k--------~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~ 222 (250)
T PF02191_consen 157 TLSV----EQTWNTS--YPK--------RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNIS 222 (250)
T ss_pred cCce----EEEEEec--cCc--------hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceE
Confidence 0111 3456432 111 1123455678999999763 23457899999888777777665444333
Q ss_pred EEEE---CCeEEEE
Q 012227 352 LAEC---GGRIMLV 362 (468)
Q Consensus 352 l~~~---~G~L~lv 362 (468)
.+.+ +.+||+-
T Consensus 223 ~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 223 MLSYNPRDKKLYAW 236 (250)
T ss_pred eeeECCCCCeEEEE
Confidence 3333 4566654
No 165
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.33 E-value=7.6e+02 Score=27.07 Aligned_cols=97 Identities=18% Similarity=0.365 Sum_probs=50.8
Q ss_pred eEEEEEEe-cCcEEEEeCCCCCc----cCCCCCCCCcccCcccccccceE--EECCEEEEEEcCCCeEEEEECCC-CeEE
Q 012227 266 YKILWVGC-DGEYEIYDSLRNSW----TRPGSMPSNIKLPVSLNFRSQAV--SVDGILYFMRSDPEGIVSYNMVT-GVWK 337 (468)
Q Consensus 266 ykVv~v~~-~~~v~vy~s~t~~W----~~~~~~p~~~~~~~~~~~~~~~v--~~~G~lY~~~~~~~~i~~fD~~~-~~w~ 337 (468)
..+++.|+ ++++.|||..++-- ++..+ ...++ ..+|..-+-..=.+.+-++|+.. ..++
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-------------~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-------------GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCCC-------------ceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 34555554 56799998776421 11110 01122 23444333332235788899876 3566
Q ss_pred EeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 338 QFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 338 ~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
....|.|... ..+++ -.|.|.+++... .-.|.||.++.
T Consensus 429 Tft~P~p~Qf--scvavD~sGelV~AG~~d---~F~IfvWS~qT 467 (893)
T KOG0291|consen 429 TFTSPEPIQF--SCVAVDPSGELVCAGAQD---SFEIFVWSVQT 467 (893)
T ss_pred eecCCCceee--eEEEEcCCCCEEEeeccc---eEEEEEEEeec
Confidence 6656666433 22322 248887777543 35567776654
No 166
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=29.22 E-value=2.7e+02 Score=22.45 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=27.5
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG 272 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~ 272 (468)
.+.++||.|+.|...-+.+. ....+.+..+ +..+.|+|+...
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~---~ls~V~~~~~--~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQ---GFSRVQIYHH--PRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCC---CcceEEEEEc--CCCCEEEEEEee
Confidence 58899999999876544111 1223555566 667789988654
No 167
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.29 E-value=6.9e+02 Score=25.95 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~~~ 290 (468)
++.+.|.+..+. .+|+||-.+++-..|-... ......+. .. .++..+++|.. +.+++||..+..= +
T Consensus 186 ss~n~laValg~--~vylW~~~s~~v~~l~~~~--~~~vtSv~--ws-----~~G~~LavG~~~g~v~iwD~~~~k~--~ 252 (484)
T KOG0305|consen 186 SSANVLAVALGQ--SVYLWSASSGSVTELCSFG--EELVTSVK--WS-----PDGSHLAVGTSDGTVQIWDVKEQKK--T 252 (484)
T ss_pred ccCCeEEEEecc--eEEEEecCCCceEEeEecC--CCceEEEE--EC-----CCCCEEEEeecCCeEEEEehhhccc--c
Confidence 355566665543 6999999999987776643 22222222 22 23556667754 4599999876542 1
Q ss_pred CCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG 334 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~ 334 (468)
..+... ...+-.++.-++.+.-.+.....|+.+|+...
T Consensus 253 ~~~~~~------h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 253 RTLRGS------HASRVGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred ccccCC------cCceeEEEeccCceEEEecCCCcEEEEEEecc
Confidence 111110 01122334445555555555567888887654
No 168
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.46 E-value=5.5e+02 Score=24.49 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=33.7
Q ss_pred EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe--cC----CEEEEEeeeCCCCeEEEEECCCCcEEEc-cCCc
Q 012227 374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG--NK----GLLMLSLRSRQMNRLVTYNVMSREWLKV-PGCV 444 (468)
Q Consensus 374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~--~~----~~I~~~~~~~~~~~l~~YD~~t~~w~~v-~~~~ 444 (468)
+++.+|..+++=.+...+|...... .....-..+. .+ +.+|+.- .....+++||+.+++..++ ....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~--~s~lndl~VD~~~~~~~~~~aYItD--~~~~glIV~dl~~~~s~Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPP--DSFLNDLVVDVRDGNCDDGFAYITD--SGGPGLIVYDLATGKSWRVLHNSF 108 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-T--CGGEEEEEEECTTTTS-SEEEEEEE--TTTCEEEEEETTTTEEEEEETCGC
T ss_pred EEEEEECCCCcEEEEEECChHHccc--ccccceEEEEccCCCCcceEEEEeC--CCcCcEEEEEccCCcEEEEecCCc
Confidence 5555566666655556666554321 1111112222 11 4566643 3346899999999764444 4433
No 169
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=27.35 E-value=5.3e+02 Score=24.25 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=88.5
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
++|--...++.+..+-||+-...+..++=....+ . -.++.+ .+.-.+++-...+.+.|+|.+++.-... .
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp---V--n~vvlh----pnQteLis~dqsg~irvWDl~~~~c~~~-l 162 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP---V--NTVVLH----PNQTELISGDQSGNIRVWDLGENSCTHE-L 162 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhccCCCC---c--ceEEec----CCcceEEeecCCCcEEEEEccCCccccc-c
Confidence 4554444444556788887765333222111111 0 112222 2334555433445699999998865432 2
Q ss_pred CCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCC-CCCce----EEEECCeEEEEEEEee
Q 012227 293 MPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH-LNDHT----LAECGGRIMLVGLLTK 367 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~-~~~~~----l~~~~G~L~lv~~~~~ 367 (468)
+|... .+ ..+..|.-+|+.-.-..+.+...+.++-+.....--.|.... ....+ +..-+++..+.+..
T Consensus 163 iPe~~-~~----i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-- 235 (311)
T KOG0315|consen 163 IPEDD-TS----IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-- 235 (311)
T ss_pred CCCCC-cc----eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC--
Confidence 23221 11 123334445665444444455666666554332211232111 11112 22236665544432
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
..++.||..+.. -+=+++-.-...| .+.|+...+--|+...+. ...+-.+|++.++-.+
T Consensus 236 --dktv~iwn~~~~-~kle~~l~gh~rW---------vWdc~FS~dg~YlvTass-d~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 236 --DKTVKIWNTDDF-FKLELVLTGHQRW---------VWDCAFSADGEYLVTASS-DHTARLWDLSAGKEVR 294 (311)
T ss_pred --CceEEEEecCCc-eeeEEEeecCCce---------EEeeeeccCccEEEecCC-CCceeecccccCceee
Confidence 368899987753 1111111111112 244554333233333332 3566778888776443
No 170
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.16 E-value=5.2e+02 Score=24.10 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~ 302 (468)
.+.+.+||-.|++..+==. .+.....++. ++. +--|++-++ +..+.+||.++++-+.+..+.....
T Consensus 80 Dk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~--fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D---- 146 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFR--GHLAQVNTVR--FNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD---- 146 (307)
T ss_pred CceEEEEEcccCeeeeecc--cccceeeEEE--ecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcC----
Confidence 4579999999988653211 1111112222 331 123443333 5569999999998877765433211
Q ss_pred cccccceEEECCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 303 LNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 303 ~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
.-.++.+++..-+-+.-...+-.||+..++...
T Consensus 147 ---~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 147 ---GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred ---ceeEEEecccEEEeeccCCcEEEEEeecceeeh
Confidence 123555666666666555678899998877543
No 171
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=26.17 E-value=6.7e+02 Score=25.07 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=20.3
Q ss_pred CCeEEEeecCCCCCCCCceEEEECCeEEEEEE
Q 012227 333 TGVWKQFIIPTPLHLNDHTLAECGGRIMLVGL 364 (468)
Q Consensus 333 ~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~ 364 (468)
.+.|+.++. .....-.++.++|++|++..
T Consensus 189 ~~~Wt~l~~---~~~~~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 189 GNVLKALKQ---MGYHFSDIIVHKGQTYALDS 217 (373)
T ss_pred CCeeeEccC---CCceeeEEEEECCEEEEEcC
Confidence 489998742 22234568899999999854
No 172
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=25.94 E-value=1.2e+02 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCEEEEEeee--CCCCeEEEEECCCCcEEEccC
Q 012227 412 KGLLMLSLRS--RQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 412 ~~~I~~~~~~--~~~~~l~~YD~~t~~w~~v~~ 442 (468)
+|.+|..... .....+++||+++.+|+.++.
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~ 37 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL 37 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe
Confidence 5777663332 345689999999999998864
No 173
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.69 E-value=1.5e+02 Score=18.22 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=18.1
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWK 337 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~ 337 (468)
++.+|+.....+.|..+|+.+.+..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEE
Confidence 3467877766678999999776543
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=25.03 E-value=4.6e+02 Score=28.07 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=34.1
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceE-EEECCeEEEEEEEeeCCccEEEEEE
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTL-AECGGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l-~~~~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
..|.+|++...+=....-+.|....+..+ -+|+|++.++.+..+.....+.+|.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 46888888765433333444544444444 5799999999887765555566663
No 175
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.77 E-value=3.6e+02 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=23.8
Q ss_pred EEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCC
Q 012227 408 CLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGC 443 (468)
Q Consensus 408 ~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~ 443 (468)
.+..+|..++.+.. +..+.||.+-+.|.+|..-
T Consensus 73 ~lt~~G~PiV~lsn---g~~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 73 SLTSNGVPIVTLSN---GDSYSYSPDLGCWIRVSDS 105 (219)
T ss_pred EEcCCCCEEEEEeC---CCEEEeccccceeEEeccc
Confidence 34456666555443 4689999999999999664
No 176
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=24.75 E-value=4.9e+02 Score=26.39 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=67.7
Q ss_pred eeecCceEEEEEc----CCceEEEEcCCCCceEecCCCCcCCcc-eeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCC
Q 012227 210 VASAGGLVCFLDI----GHRNFYVCNPLTQSFKELPARSVKVWS-RVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLR 284 (468)
Q Consensus 210 ~~s~~GLl~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t 284 (468)
.+-.+.||++.-. ..-+++|+|..|++-.++..+...... .---|+.+ ++.|-+ ..++..+||-..
T Consensus 234 yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIF-----pgGYyL----qtGe~K~Fd~~~ 304 (448)
T PF12458_consen 234 YARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIF-----PGGYYL----QTGEYKTFDTDM 304 (448)
T ss_pred eeecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEc-----cCceEe----ccCCceeecccC
Confidence 4445666666532 224799999999999988775221100 00011111 011111 123355565433
Q ss_pred CCccCCCCCCCCcccCcccccccceEEEC--CEEEEEEc---CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeE
Q 012227 285 NSWTRPGSMPSNIKLPVSLNFRSQAVSVD--GILYFMRS---DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRI 359 (468)
Q Consensus 285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~~--G~lY~~~~---~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L 359 (468)
..-+ +......-| ..+|+.-. +...++.||+-.++.. .|+.++. ...--+|+|
T Consensus 305 ~~l~----------------F~r~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v~---tPi~chG---~alf~DG~l 362 (448)
T PF12458_consen 305 DGLE----------------FERKVRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEVA---TPIICHG---YALFEDGRL 362 (448)
T ss_pred CCce----------------EEEEecCCCCceEEEEEEECCCCcEEEEechhhhhhhc---CCeeccc---eeEecCCEE
Confidence 3110 000001112 46777653 2346889998776654 4555433 223348999
Q ss_pred EEEEEEeeC--CccEEEEEE
Q 012227 360 MLVGLLTKN--AATCVCIWE 377 (468)
Q Consensus 360 ~lv~~~~~~--~~~~i~Vw~ 377 (468)
++......+ ...-++||.
T Consensus 363 ~~fra~~~EptrvHp~QiWq 382 (448)
T PF12458_consen 363 VYFRAEGDEPTRVHPMQIWQ 382 (448)
T ss_pred EEEecCCCCcceeccceeec
Confidence 887653221 124578885
No 177
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=24.35 E-value=2.8e+02 Score=27.50 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=35.5
Q ss_pred EEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227 219 FLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN 285 (468)
Q Consensus 219 ~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~ 285 (468)
+.+...+.+.+|||.++.-...-..-...... .-++-. ..++.|.++....++.+.++|.++.
T Consensus 316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw-Vssvkw---sp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-VSSVKW---SPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eecCCCCceeecCCCCCCCceeEEeeecchhh-hhheec---CCCCceEEEEEecCCeEEEEEeccC
Confidence 33444567999999988544322211111110 011111 4567788887777888888887753
No 178
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.06 E-value=6.6e+02 Score=24.27 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=36.2
Q ss_pred ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
.++..|+++. ...|+.-.-...+|..++++.+.......+... ++...+++.. =.||+-.+....|+.+..
T Consensus 70 ~~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 70 DGNEGWIVGE-PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp ETTEEEEEEE-TTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-
T ss_pred cCCceEEEcC-CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc
Confidence 4566666654 345555555678999986654333222333333 5555554421 268887877889998743
No 179
>PRK03629 tolB translocation protein TolB; Provisional
Probab=23.91 E-value=7.7e+02 Score=24.96 Aligned_cols=144 Identities=9% Similarity=0.040 Sum_probs=69.5
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECC-EEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceE
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDG-ILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l 352 (468)
.+.+++..++.-+.+...+... ......-+| .|++.... ...|..+|+.+++...+ ...... ....
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~--------~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~--~~~~ 292 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHN--------GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSN--NTEP 292 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCc--------CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCC--cCce
Confidence 3777787766544443322111 011112245 45555332 23588899988877654 211111 1111
Q ss_pred E-EECCe-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEE
Q 012227 353 A-ECGGR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTY 430 (468)
Q Consensus 353 ~-~~~G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~Y 430 (468)
. .-+|+ |+++.. . ....+||.++..++.-.++..-.... .......+|..|++.........++.+
T Consensus 293 ~wSPDG~~I~f~s~-~---~g~~~Iy~~d~~~g~~~~lt~~~~~~--------~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 293 TWFPDSQNLAYTSD-Q---AGRPQVYKVNINGGAPQRITWEGSQN--------QDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred EECCCCCEEEEEeC-C---CCCceEEEEECCCCCeEEeecCCCCc--------cCEEECCCCCEEEEEEccCCCceEEEE
Confidence 1 12555 443331 1 12358888887655444432111000 011122245566553322233568899
Q ss_pred ECCCCcEEEccC
Q 012227 431 NVMSREWLKVPG 442 (468)
Q Consensus 431 D~~t~~w~~v~~ 442 (468)
|+++++++.+..
T Consensus 361 dl~~g~~~~Lt~ 372 (429)
T PRK03629 361 DLATGGVQVLTD 372 (429)
T ss_pred ECCCCCeEEeCC
Confidence 999999887753
No 180
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.66 E-value=8.1e+02 Score=25.16 Aligned_cols=138 Identities=15% Similarity=0.223 Sum_probs=66.5
Q ss_pred eEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-cEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227 226 NFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-EYEIYDSLRNSWTRPGSMPSNIKLPVSL 303 (468)
Q Consensus 226 ~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-~v~vy~s~t~~W~~~~~~p~~~~~~~~~ 303 (468)
++.+|+-.|.+-+. +.. +.. ..+.+.|- .+.+++++|... .+.|||-.+.. .+-.+..+ ..|.
T Consensus 49 rvqly~~~~~~~~k~~sr--Fk~-~v~s~~fR-------~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah-~apv-- 113 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSR--FKD-VVYSVDFR-------SDGRLLAAGDESGHVKVFDMKSRV--ILRQLYAH-QAPV-- 113 (487)
T ss_pred EEEEEecchhhhhhhHHh--hcc-ceeEEEee-------cCCeEEEccCCcCcEEEeccccHH--HHHHHhhc-cCce--
Confidence 56667766665443 222 111 12223333 347888887654 49999944411 01011000 0010
Q ss_pred ccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc---eEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 304 NFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH---TLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 304 ~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~---~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
+. ..-...++.+...+.++..+.-+|..+..- .+.+ ..+.... .+.-.++.+.+.|++. ..+++|....
T Consensus 114 ~~-~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l--~~htDYVR~g~~~~~~~hivvtGsYD----g~vrl~DtR~ 185 (487)
T KOG0310|consen 114 HV-TKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAEL--SGHTDYVRCGDISPANDHIVVTGSYD----GKVRLWDTRS 185 (487)
T ss_pred eE-EEecccCCeEEEecCCCceEEEEEcCCcEE-EEEe--cCCcceeEeeccccCCCeEEEecCCC----ceEEEEEecc
Confidence 00 001114677777776665666677777663 3222 2222221 2223366777766654 4788886654
Q ss_pred CCCCeEE
Q 012227 381 MTLLWKE 387 (468)
Q Consensus 381 ~~~~W~~ 387 (468)
.+ .|..
T Consensus 186 ~~-~~v~ 191 (487)
T KOG0310|consen 186 LT-SRVV 191 (487)
T ss_pred CC-ceeE
Confidence 43 4543
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.30 E-value=9.5e+02 Score=25.84 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=61.8
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCc-eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQS-FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W 287 (468)
+..++-|+++......+++-.+|.-.. -+.+-..+........+.+..|. -|++.+. ....+++++..+.+-
T Consensus 390 iSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~------~k~~~~s~~~~~le~~el~~ps~ 463 (691)
T KOG2048|consen 390 ISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDK------NKLFLVSKNIFSLEEFELETPSF 463 (691)
T ss_pred cCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecC------ceEEEEecccceeEEEEecCcch
Confidence 444566777776555567777774321 11222222222233344455552 3666555 344578888777776
Q ss_pred cCCCCCCCCcccCcccccccceEEECCE-EEEEEcCCCeEEEEECCCCeEEEe
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSVDGI-LYFMRSDPEGIVSYNMVTGVWKQF 339 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~-lY~~~~~~~~i~~fD~~~~~w~~i 339 (468)
+++.........+.- ..-.+.-+|. |-+++ ....|.+||+++.+-..+
T Consensus 464 kel~~~~~~~~~~~I---~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 464 KELKSIQSQAKCPSI---SRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLL 512 (691)
T ss_pred hhhhccccccCCCcc---eeEEEcCCCCEEEEEe-ccceEEEEEcccceeecc
Confidence 665443222111110 1112222444 44444 446799999999887765
No 182
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=23.21 E-value=21 Score=29.59 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.3
Q ss_pred hhccChHHHHHHHHhcCChhhH
Q 012227 118 IWKEFPEDLYEAVIARLPIATF 139 (468)
Q Consensus 118 ~w~~LP~DLl~~IL~RLp~~~l 139 (468)
.|..+|+.|-.-||+|+|+.++
T Consensus 118 pw~~rPe~Lk~~ilArIPp~~~ 139 (143)
T COG5469 118 PWRKRPEPLKRGILARIPPGDL 139 (143)
T ss_pred ccccCChhHhcceeeecCCccc
Confidence 4899999999999999997553
No 183
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.96 E-value=6.6e+02 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=14.0
Q ss_pred CCEEEEEeeeCCCCeEEEEECCCC
Q 012227 412 KGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 412 ~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
++.|++..+ ++.+.+.|+++.
T Consensus 333 ~grl~igcR---DdYv~cldl~~~ 353 (354)
T KOG4649|consen 333 DGRLLIGCR---DDYVRCLDLDTW 353 (354)
T ss_pred ccEEEEEEc---cCeEEEEecccc
Confidence 477776433 457888888763
No 184
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=22.81 E-value=1.1e+03 Score=26.27 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=48.1
Q ss_pred eEEEEEEe-cCcEEEEeCCCCC--------ccCCCCCCCCcccCcccccccceEEECCEEEE-EEcCCCeEEEEECCCCe
Q 012227 266 YKILWVGC-DGEYEIYDSLRNS--------WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYF-MRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 266 ykVv~v~~-~~~v~vy~s~t~~--------W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~-~~~~~~~i~~fD~~~~~ 335 (468)
--|+++|. ++++.+|+.+.++ |..+.++. .--+|.-.. .+...+.+..+|++...
T Consensus 214 LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS---------------FrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 214 LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS---------------FRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE---------------eccCCCeeEEeccCCceEEEEEcCCCe
Confidence 34666665 4457888777654 54443211 111343222 22233457788988776
Q ss_pred EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 336 WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 336 w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
...+ +-......-..+..+.|+=.+++...+ ..+++|.+|.
T Consensus 279 l~~v-~~nah~~sv~~~~fl~~epVl~ta~~D---nSlk~~vfD~ 319 (910)
T KOG1539|consen 279 LINV-TRNAHYGSVTGATFLPGEPVLVTAGAD---NSLKVWVFDS 319 (910)
T ss_pred eeee-eeccccCCcccceecCCCceEeeccCC---CceeEEEeeC
Confidence 5443 111111122344455666555554322 5678888873
No 185
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=22.76 E-value=7.4e+02 Score=26.22 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=35.7
Q ss_pred EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCC
Q 012227 277 YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPT 343 (468)
Q Consensus 277 v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~ 343 (468)
+.+-.+...+|+.+...+.-......-...--+|.-||++++-. +|-.+++..+.|..|+.|.
T Consensus 210 vs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~----GVsRqNp~GdsWkdI~tP~ 272 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYRE----GVSRQNPEGDSWKDIVTPR 272 (705)
T ss_pred ccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEe----cccccCCCCchhhhccCcc
Confidence 56666778899988654411111000000011334577666533 4778899999999875553
No 186
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.70 E-value=8.4e+02 Score=24.97 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=38.2
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
..|-+++.+.....+.|||.-|++....=.. +......+.+..| ...++....++.+.+||..++.
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~--hs~~is~~~f~~d------~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLKG--HSDGISGLAFSPD------GNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCeEEEeeec--cCCceEEEEECCC------CCEEEEcCCCccEEEEECCCCc
Confidence 3455555555567899999999776543221 1112233333222 2344444456679999998776
No 187
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=22.46 E-value=7.8e+02 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=18.9
Q ss_pred CCCeEEEEECCCCcEEEc-cCCccCCC
Q 012227 423 QMNRLVTYNVMSREWLKV-PGCVVPRG 448 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w~~v-~~~~~~~~ 448 (468)
..++++.||+.|++-+.+ ..+-++.|
T Consensus 197 ~~GRl~~YD~~tK~~~VLld~L~F~NG 223 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLLDGLYFPNG 223 (376)
T ss_pred CccceEEecCcccchhhhhhccccccc
Confidence 467899999999988665 45555544
No 188
>PTZ00420 coronin; Provisional
Probab=22.07 E-value=9.8e+02 Score=25.51 Aligned_cols=114 Identities=13% Similarity=0.188 Sum_probs=56.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC----cEEEEeCCCCCc
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG----EYEIYDSLRNSW 287 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~----~v~vy~s~t~~W 287 (468)
.+|-+++.....+.+.+||+.+++-. .+..... ......+..+. -......|+..+.+. .+.+||.+...
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g---~~~s~~v~~~~-fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~- 251 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG---GKNTKNIWIDG-LGGDDNYILSTGFSKNNMREMKLWDLKNTT- 251 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccC---CceeEEEEeee-EcCCCCEEEEEEcCCCCccEEEEEECCCCC-
Confidence 35655555544568999999987654 2322111 11111111110 011223455555443 48999987421
Q ss_pred cCCCCCCCCcccCcccccccce---EE--ECCEEEEEEcCCCeEEEEECCCCeEEEe
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQA---VS--VDGILYFMRSDPEGIVSYNMVTGVWKQF 339 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~---v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i 339 (468)
..+..+. + ...... .+ -.|.+|+.+.+...|-.||+.++....+
T Consensus 252 ~pl~~~~----l----d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 252 SALVTMS----I----DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CceEEEE----e----cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 0111000 0 000111 11 1488888887777899999987755443
No 189
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=6.2e+02 Score=23.21 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=31.6
Q ss_pred cEEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCC
Q 012227 276 EYEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 276 ~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~ 333 (468)
.+.++|..+++ |+. .++.. -.|....+..+..+|.++..+.....||..+
T Consensus 69 ~ir~~~L~~gq~~~s~--~l~~~------~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 69 KIRVSDLTTGQEIFSE--KLAPD------TVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred eeEEEeccCceEEEEe--ecCCc------cccccceeeccceEEEEEeccceeEEEChHH
Confidence 47788877554 432 22211 1233445667899999998777778888765
No 190
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.39 E-value=4.3e+02 Score=27.34 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=34.2
Q ss_pred CEEEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCCC--ceEEEECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 314 GILYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLND--HTLAECGGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~~--~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
-.-|+.++...+|-+.|+.... .-.-.++.-..... .+..--+|+-.+|++. ..++.||.|...
T Consensus 430 ~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe----astlsiWDLAap 497 (705)
T KOG0639|consen 430 PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE----ASTLSIWDLAAP 497 (705)
T ss_pred CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc----cceeeeeeccCC
Confidence 3345555556778888876431 11111111111111 1223348888888865 468999988753
No 191
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=20.82 E-value=1.9e+02 Score=17.69 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.3
Q ss_pred ECCEEEEEEcCCCeEEEEECCC
Q 012227 312 VDGILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~ 333 (468)
.++.+||.......|.++++..
T Consensus 19 ~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 19 IEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred cCCEEEEEeCCCCEEEEEeCCC
Confidence 5789999987767788887754
No 192
>PLN00181 protein SPA1-RELATED; Provisional
Probab=20.76 E-value=1.2e+03 Score=25.92 Aligned_cols=196 Identities=7% Similarity=-0.053 Sum_probs=0.0
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
.+.++-.++.......+.+||..+++....-. .+......+.+ ...+...++..+.++.+.+||..++.-...
T Consensus 541 ~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~-----~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDY-----SSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred ccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEE-----cCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Q ss_pred CCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~ 367 (468)
.........+.+ +|...+.+...+.|..||+.+..-... .-......-..+.-.++..++.+....
T Consensus 614 ----------~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~-~~~~h~~~V~~v~f~~~~~lvs~s~D~ 682 (793)
T PLN00181 614 ----------IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC-TMIGHSKTVSYVRFVDSSTLVSSSTDN 682 (793)
T ss_pred ----------EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce-EecCCCCCEEEEEEeCCCEEEEEECCC
Q ss_pred CCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 368 NAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
.+.||.+... ...|..+..+...... ....++...+.++++.... +.+.+||.....
T Consensus 683 ----~ikiWd~~~~~~~~~~~~l~~~~gh~~~------i~~v~~s~~~~~lasgs~D--~~v~iw~~~~~~ 741 (793)
T PLN00181 683 ----TLKLWDLSMSISGINETPLHSFMGHTNV------KNFVGLSVSDGYIATGSET--NEVFVYHKAFPM 741 (793)
T ss_pred ----EEEEEeCCCCccccCCcceEEEcCCCCC------eeEEEEcCCCCEEEEEeCC--CEEEEEECCCCC
No 193
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.41 E-value=1.1e+03 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEe
Q 012227 202 PTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYD 281 (468)
Q Consensus 202 p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~ 281 (468)
|.....+ +|+-+|...+.......+. +...+.+-.-...... -..|+-+. +...+ +|++...|..+.+||
T Consensus 461 PdGk~av-IGt~~G~C~fY~t~~lk~~-----~~~~I~~~~~Kk~~~~-rITG~Q~~--p~~~~-~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 461 PDGKGAV-IGTFNGYCRFYDTEGLKLV-----SDFHIRLHNKKKKQGK-RITGLQFF--PGDPD-EVLVTSNDSRIRIYD 530 (712)
T ss_pred cCCceEE-EEEeccEEEEEEccCCeEE-----EeeeEeeccCccccCc-eeeeeEec--CCCCC-eEEEecCCCceEEEe
Confidence 4443455 8888888777765433222 1111112111111111 23566555 22222 888888888999999
Q ss_pred CCCC
Q 012227 282 SLRN 285 (468)
Q Consensus 282 s~t~ 285 (468)
..+.
T Consensus 531 ~~~~ 534 (712)
T KOG0283|consen 531 GRDK 534 (712)
T ss_pred ccch
Confidence 8643
No 194
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.07 E-value=8.6e+02 Score=24.09 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=54.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceEEEECC-eEEEEEEEee-----CCccEEEEEEEecCCCCeEEEEeeChhhhh
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGG-RIMLVGLLTK-----NAATCVCIWELQKMTLLWKEVDRMPNIWCL 397 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G-~L~lv~~~~~-----~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~ 397 (468)
+.|.++|..+.+.... +|....- ..+..-+| .||+...+.. .....+.|| |. .+.+.+..++..-..
T Consensus 27 ~~v~ViD~~~~~v~g~-i~~G~~P--~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~--D~--~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM-TDGGFLP--NPVVASDGSFFAHASTVYSRIARGKRTDYVEVI--DP--QTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEE-EEccCCC--ceeECCCCCEEEEEeccccccccCCCCCEEEEE--EC--ccCcEEeEEccCCCc
Confidence 4688899888775443 3332221 12333344 5555544211 234667777 44 344555555432110
Q ss_pred cc-cCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 398 DF-YGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 398 ~~-~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
++ .+.......+. +|..+|+... .....+-+.|+.+++...
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEE
Confidence 10 11112233444 4556776432 225689999999997655
Done!